Please help us to improve our services and obtain funding for the
BCM Search Launcher
-- take a minute to complete our User Survey

BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 






processing output:
cycle 1
cycle 2
cycle 3
cycle 4

Repeat sequence:
   SW  perc perc perc  query               position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence            begin  end (left)    repeat   class/family  begin  end (left)  ID

  324   7.0  0.0  0.0  SSH8G07.SEQ(1>289)    217  259    (6) +  (A)n     Simple_repeat     1   43    (0)      



Alignments:
324  6.98  0.00  0.00  SSH8G07.SEQ(1>289)  217  259  (6)  (A)n#Simple_repeat  1  43  (137)  5

  SSH8G07.SEQ(1>2    217 AAAAAAAGGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 259    
                                ii     i                            
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 43

Transitions / transversions = 1.00 (3 / 0)
Gap_init rate = 0.00 (0 / 43), avg. gap size = 0.00 (0 / 0)  



Masked Sequence:
>SSH8G07.SEQ(1>289)
RHSACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGAT
GGTCCCTGCGGATGTTGACGCAATGTGATTTCCGCCCAGTGCTCTGAATG
TCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTCAAATT
TTATGTCATTTTAAATTATGCTCCTTTGGTCAAGAGTGTTTAATAATCTT
TATTGTTTATGTGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGCTTGT



Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       265 bp
GC level:         35.98 %
bases masked:        43 bp ( 16.23 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           43 bp    16.23 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000




Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  SSH8G07.SEQ(1>289)
        (265 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 4 Sequences     : less than 4 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1219 225 |========================================================
   6310  994 152 |======================================
   3980  842 203 |==================================================
   2510  639 171 |==========================================
   1580  468 104 |==========================
   1000  364 107 |==========================
    631  257  59 |==============
    398  198  38 |=========
    251  160  52 |=============
    158  108  31 |=======
    100   77  21 |=====
   63.1   56  23 |=====
   39.8   33   7 |=
   25.1   26   6 |=
   15.8   20   6 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 14  <<<<<<<<<<<<<<<<<
   10.0   14   3 |:
   6.31   11   3 |:
   3.98    8   1 |:
   2.51    7   2 |:
   1.58    5   1 |:
   1.00    4   0 |
   0.63    4   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|7489212|pir||T02995unspecific monooxygenase (EC 1.... -2   178  7.1e-12   1
gi|7489812|pir||T02955probable cytochrome P450 monoox... -2   144  7.3e-09   1
gi|4433625|gb|AAD20817.1|(AF107589) putative alternat... -2    65  0.00023   2
gi|6580331|emb|CAB63401.1|(Z98877) cDNA EST yk385a5.3... +3    64  0.45      2
gi|100747|pir||S13931alpha-amylase inhibitor, 5K - so... +3    42  0.64      2
gi|1173436|sp|P21923|SIA1_SORBISMALL PROTEIN INHIBITO... +3    40  0.80      2
gi|544000|sp|P36910|CHIE_BETVUACIDIC ENDOCHITINASE SE... +3    53  0.90      2
gi|2501197|sp|P81009|THZ2_MAIZEGAMMA-ZEATHIONIN 2 >gi... +3    37  0.96      2
gi|4099289|gb|AAD00569.1|(U85586) attractin [Aplysia ... +3    58  0.99      1
gi|7511717|pir||A59060attractin - California sea hare    +3    58  0.99      1
gi|1350686|sp|P49165|RL4_URECA60S RIBOSOMAL PROTEIN L... -2    66  0.995     1
gi|7506159|pir||T16642hypothetical protein R01H2.3 - ... +3    55  0.9995    2
gi|7511716|pir||B59060attractin - sooty sea hare         +3    55  0.9999    1
gi|7305525ref|NP_038465.1| potential tumor suppressor... +3    55  0.99995   2



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|6580331             | __________________________                       
gi|100747              |   ______________________                         
gi|1173436             |   ______________________                         
gi|544000              |______________________        ________            
gi|2501197             |   ______________________                         
gi|4099289             |_________________________                         
gi|7511717             |_________________________                         
gi|7506159             | ___________________                              
gi|7511716             |_________________________                         
gi|7305525             | ____________________           ____              
                        __________________________________________________
Query sequence:        |          |          |           |          |     | 89
                       0         20         40          60         80


Locus_ID                Frame 1 Hits
gi|6580331             |                              _____               
gi|100747              |                            _______               
gi|1173436             |                            _______               
gi|2501197             |                            _______               
gi|7506159             |                        ____________              
                        __________________________________________________
Query sequence:        |          |          |           |          |     | 89
                       0         20         40          60         80


Locus_ID                Frame -1 Hits
gi|4433625             |         _______                                  
                        __________________________________________________
Query sequence:        |          |          |           |          |     | 89
                       0         20         40          60         80


Locus_ID                Frame -2 Hits
gi|7489212             |_________________________                         
gi|7489812             |_________________________                         
gi|4433625             |_________                                         
gi|1350686             |       _____________________                      
                        __________________________________________________
Query sequence:        |          |          |           |          |     | 89
                       0         20         40          60         80




Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.



to_Entrezto_Relatedto_Related >gi|7489212|pir||T02995  unspecific monooxygenase (EC 1.14.14.1) - common
            tobacco >gi|1545805|dbj|BAA10929.1| (D64052) cytochrome P450
            like_TBP [Nicotiana tabacum]
            Length = 530

Frame -2 hits (HSPs):              _____                                  
                        __________________________________________________
Database sequence:     |              |             |             |       | 530
                       0            150           300           450

  Minus Strand HSPs:

 Score = 178 (62.7 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 38/44 (86%), Positives = 39/44 (88%), Frame = -2

Query:   135 VYPRLVEFLHFDIQSTGRKSHCVNIRRDHRNALF*LNSRIPLVR 4
             VYPRLVEFLHFDIQSTGR +   NIRRDHRNALF LNSRIPLVR
Sbjct:   127 VYPRLVEFLHFDIQSTGRIT-LRNIRRDHRNALFKLNSRIPLVR 169


to_Entrezto_Relatedto_Related >gi|7489812|pir||T02955  probable cytochrome P450 monooxygenase - maize
            (fragment) >gi|2995384|emb|CAA06156.1| (AJ004810) cytochrome P450
            monooxygenase [Zea mays]
            Length = 270

Frame -2 hits (HSPs):                          _________                  
                        __________________________________________________
Database sequence:     |         |        |        |        |         |   | 270
                       0        50      100      150      200       250

  Minus Strand HSPs:

 Score = 144 (50.7 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 34/44 (77%), Positives = 36/44 (81%), Frame = -2

Query:   135 VYPRLVEFLHFDIQSTGRKSHCVNIR---RDHRNALF*LNSRIPLVR 4
             VYPRLVEFLHFDIQST R    + +R   RD RNALF LNSRIPLVR
Sbjct:   128 VYPRLVEFLHFDIQSTKR----ITLRQHPRDRRNALFKLNSRIPLVR 170


to_Entrezto_Relatedto_Related >gi|4433625|gb|AAD20817.1|  (AF107589) putative alternative oxidase [Dendrobium
            grex Madame Thong-In]
            Length = 63

Frame -1 hits (HSPs):         ________                                    
Frame -2 hits (HSPs):                 _____________                       
                        __________________________________________________
Database sequence:     |               |              |               |   | 63
                       0              20             40              60

  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 14/16 (87%), Positives = 14/16 (87%), Frame = -2

Query:    51 HRNALF*LNSRIPLVR 4
             HRNALF LNSRIPL R
Sbjct:    19 HRNALFSLNSRIPLDR 34

 Score = 44 (15.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 8/10 (80%), Positives = 9/10 (90%), Frame = -1

Query:    82 EITLRQHPQG 53
             EITLR+HP G
Sbjct:     9 EITLREHPLG 18


to_Entrezto_Relatedto_Related >gi|6580331|emb|CAB63401.1|  (Z98877) cDNA EST yk385a5.3 comes from this
            gene~cDNA EST yk385a5.5 comes from this gene [Caenorhabditis
            elegans]
            Length = 453

Frame  3 hits (HSPs):                            ______                   
Frame  1 hits (HSPs):                                         __          
                        __________________________________________________
Database sequence:     |                |                |               || 453
                       0              150              300             450

  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 0.59, Sum P(2) = 0.45
 Identities = 13/45 (28%), Positives = 21/45 (46%), Frame = +3

Query:    12 GESDCLIKTKHCDGPCGC*RNVISAQCSEC-QSEEIQPSAGKRRE 143
             G S  ++ TKHC   C C    + +   EC + ++  P  G+  E
Sbjct:   235 GMSKSMMCTKHCGQGCACASGYLRSSDGECYKPKDCPPECGQNEE 279

 Score = 31 (10.9 bits), Expect = 0.59, Sum P(2) = 0.45
 Identities = 5/9 (55%), Positives = 7/9 (77%), Frame = +1

Query:   163 KLCSFGQEC 189
             +LCS  Q+C
Sbjct:   352 QLCSGAQQC 360


to_Entrezto_Relatedto_Related >gi|100747|pir||S13931  alpha-amylase inhibitor, 5K - sorghum
            Length = 47

Frame  3 hits (HSPs):     ___________________________________             
Frame  1 hits (HSPs):                                        _____________
Annotated Domains:      _________________________                         
                        __________________________________________________
Database sequence:     |                    |                    |        | 47
                       0                   20                   40
__________________

Annotated Domains:
   PROSITE              GAMMA_THIONIN: Gamma-thionins family sig 1..24
__________________


  Plus Strand HSPs:

 Score = 42 (14.8 bits), Expect = 1.0, Sum P(2) = 0.64
 Identities = 13/37 (35%), Positives = 19/37 (51%), Frame = +3

Query:    24 CLIKTKHCDGPCGC*RNVISAQCS-ECQSEEIQPSAGK 134
             C+ K++H   PC     +    CS EC  EE   +AG+
Sbjct:     3 CMGKSQHHSFPC-----ISDRLCSNECVKEEGGWTAGR 35

 Score = 31 (10.9 bits), Expect = 1.0, Sum P(2) = 0.64
 Identities = 4/12 (33%), Positives = 6/12 (50%), Frame = +1

Query:   154 CHFKLCSFGQEC 189
             CH + C   + C
Sbjct:    36 CHLRYCRCQKAC 47


to_Entrezto_Relatedto_Related >gi|1173436|sp|P21923|SIA1_SORBI  SMALL PROTEIN INHIBITOR OF INSECT
            ALPHA-AMYLASES 1 (SI ALPHA-1)
            Length = 47

Frame  3 hits (HSPs):     __________________________________              
Frame  1 hits (HSPs):                                        _____________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                    |        | 47
                       0                   20                   40
__________________

Annotated Domains:
   BLOCKS               BL00940A: Gamma-thionins family proteins 1..24
   BLOCKS               BL00940B: Gamma-thionins family proteins 36..47
   DOMO                 DM00833: GAMMA-THIONINSFAMILY            1..46
   PFAM                 Gamma-thionin: Gamma-thionins family     1..47
   PRODOM               PD002594: THG1(3) AFP1(2) THG(2)         1..46
   PROSITE              GAMMA_THIONIN: Gamma-thionins family sig 1..24
__________________


  Plus Strand HSPs:

 Score = 40 (14.1 bits), Expect = 1.6, Sum P(2) = 0.80
 Identities = 13/36 (36%), Positives = 18/36 (50%), Frame = +3

Query:    24 CLIKTKHCDGPCGC*RNVISAQCS-ECQSEEIQPSAG 131
             C+ K++H   PC     +    CS EC  EE   +AG
Sbjct:     3 CMGKSQHHSFPC-----ISDRLCSNECVKEEGGWTAG 34

 Score = 31 (10.9 bits), Expect = 1.6, Sum P(2) = 0.80
 Identities = 4/12 (33%), Positives = 6/12 (50%), Frame = +1

Query:   154 CHFKLCSFGQEC 189
             CH + C   + C
Sbjct:    36 CHLRYCRCQKAC 47


to_Entrezto_Relatedto_Relatedto_ec >gi|544000|sp|P36910|CHIE_BETVU  ACIDIC ENDOCHITINASE SE2 PRECURSOR
            >gi|432580|gb|AAB28479.1| (S66038) acidic class III chitinase
            SE2=pathogenesis-related protein [Beta vulgaris=sugar beets,
            Monova, leaves, Peptide, 293 aa]
            Length = 293

Frame  3 hits (HSPs):             _______                             ___ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 293
                       0       50     100      150     200      250
__________________

Annotated Domains:
   BLOCKS               BL01095A: Chitinases family 18 proteins. 107..117
   BLOCKS               BL01095B: Chitinases family 18 proteins. 143..154
   BLOCKS               BL01095C: Chitinases family 18 proteins. 271..282
   DOMO                 DM00746: CHITINASESFAMILY18              26..292
   Entrez               active site: PROTON DONOR (BY SIMILARITY 151
   PFAM                 chitinase_2: Chitinases, family 2        1..293
   PRODOM               PD001237: CHIA(6) CHI1(3) CHI2(3)        22..292
   PROSITE              CHITINASE_18: Chitinases family 18 activ 143..151
__________________


  Plus Strand HSPs:

 Score = 53 (18.7 bits), Expect = 2.3, Sum P(2) = 0.90
 Identities = 12/38 (31%), Positives = 17/38 (44%), Frame = +3

Query:     6 GQGESDCLIKTKHCDGPCGC*RNVISAQCSECQSEEIQ 119
             G G++  L    HCD    C  N +S+    CQ   I+
Sbjct:    62 GNGQTPALNLAGHCDPATNC--NSLSSDIKTCQQAGIK 97

 Score = 32 (11.3 bits), Expect = 2.3, Sum P(2) = 0.90
 Identities = 4/12 (33%), Positives = 10/12 (83%), Frame = +3

Query:   168 MLLWSRVFNNLY 203
             ++LWS+ +++ Y
Sbjct:   274 VMLWSKAYDSGY 285


to_Entrezto_Relatedto_Related >gi|2501197|sp|P81009|THZ2_MAIZE  GAMMA-ZEATHIONIN 2 >gi|7451435|pir||B58319
            gamma-zeathionin 2 - maize
            Length = 47

Frame  3 hits (HSPs):     __________________________________              
Frame  1 hits (HSPs):                                        _____________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                    |        | 47
                       0                   20                   40
__________________

Annotated Domains:
   BLOCKS               BL00940A: Gamma-thionins family proteins 1..24
   BLOCKS               BL00940B: Gamma-thionins family proteins 36..47
   PFAM                 Gamma-thionin: Gamma-thionins family     1..47
   PRODOM               PD002594: THG1(3) AFP1(2) THG(2)         1..46
   PROSITE              GAMMA_THIONIN: Gamma-thionins family sig 1..24
__________________


  Plus Strand HSPs:

 Score = 37 (13.0 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 12/36 (33%), Positives = 18/36 (50%), Frame = +3

Query:    24 CLIKTKHCDGPCGC*RNVISAQCS-ECQSEEIQPSAG 131
             C+ K++H   PC     +    CS EC  E+   +AG
Sbjct:     3 CMGKSQHHSFPC-----ISDRLCSNECVKEDGGWTAG 34

 Score = 31 (10.9 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 4/12 (33%), Positives = 6/12 (50%), Frame = +1

Query:   154 CHFKLCSFGQEC 189
             CH + C   + C
Sbjct:    36 CHLRYCRCQKAC 47


to_Entrezto_Relatedto_Related >gi|4099289|gb|AAD00569.1|  (U85586) attractin [Aplysia californica]
            Length = 76

Frame  3 hits (HSPs):                  ______________________________     
                        __________________________________________________
Database sequence:     |            |            |            |           | 76
                       0           20           40           60

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
 Identities = 14/45 (31%), Positives = 24/45 (53%), Frame = +3

Query:     6 GQGESDCLIKTKHCDGPCGC*RNVISAQCS-----ECQSEEIQPSAG 131
             G   S C ++ K+C+   GC  + I  +C       CQ++E + +AG
Sbjct:    25 GNITSQCQMQHKNCEDANGC--DTIIEECKTSMVERCQNQEFESAAG 69


to_Entrezto_Relatedto_Related >gi|7511717|pir||A59060  attractin - California sea hare
            Length = 58

Frame  3 hits (HSPs):        _______________________________________      
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
 Identities = 14/45 (31%), Positives = 24/45 (53%), Frame = +3

Query:     6 GQGESDCLIKTKHCDGPCGC*RNVISAQCS-----ECQSEEIQPSAG 131
             G   S C ++ K+C+   GC  + I  +C       CQ++E + +AG
Sbjct:     7 GNITSQCQMQHKNCEDANGC--DTIIEECKTSMVERCQNQEFESAAG 51


to_Entrezto_Relatedto_Related >gi|1350686|sp|P49165|RL4_URECA  60S RIBOSOMAL PROTEIN L4 (L1)
            >gi|7440596|pir||T12048 ribosomal protein L4 - spoonworm (Urechis
            caupo) >gi|929961|gb|AAA74021.1| (U30495) ribosomal protein
            [Urechis caupo]
            Length = 386

Frame -2 hits (HSPs):     ______                                          
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 386
                       0                 150                300
__________________

Annotated Domains:
   DOMO                 DM01673: RIBOSOMALPROTEINL1E             5..260
   DOMO                 DM02240: RIBOSOMALPROTEINL1E             262..352
   PFAM                 Ribosomal_L4: Ribosomal protein L4/L1 fa 19..262
   PRODOM               PD107422: RL4(13) RL4A(2) O94253(1)      7..259
   PRODOM               PD006293: RL4(7) RL4A(2) O94253(1)       262..339
   PRODOM               PD107440: RL4_URECA                      341..385
   PROSITE              RIBOSOMAL_L1E: Ribosomal protein L1e sig 115..141
__________________


  Minus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 5.4, P = 1.0
 Identities = 14/43 (32%), Positives = 27/43 (62%), Frame = -2

Query:   150 NLT-PAVY-----PRLVEFLHFDIQSTGRKSHCVNIRRDHRNA 40
             N+T PAV+     P +V F+HF+++  GR+ + V+ +  H+ +
Sbjct:    20 NVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTS 62


to_Entrezto_Relatedto_Related >gi|7506159|pir||T16642  hypothetical protein R01H2.3 - Caenorhabditis elegans
            >gi|458992|gb|AAA50645.1| (U00035) similar to cysteine-rich repeat
            regions of LDL receptors and mouse AM2 receptor [Caenorhabditis
            elegans]
            Length = 548

Frame  3 hits (HSPs):              ____                                   
Frame  1 hits (HSPs):                            ___                      
                        __________________________________________________
Database sequence:     |             |             |            |         | 548
                       0           150           300          450

  Plus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 7.6, Sum P(2) = 1.0
 Identities = 13/33 (39%), Positives = 15/33 (45%), Frame = +3

Query:    12 GESDCLI-KTKHCDGPCGC*RNVISAQCSECQS 107
             G  D +I  +K CDG   C        C ECQS
Sbjct:   132 GSIDMIIPSSKRCDGLKDCSDGSDEENCKECQS 164

 Score = 31 (10.9 bits), Expect = 7.6, Sum P(2) = 1.0
 Identities = 6/20 (30%), Positives = 10/20 (50%), Frame = +1

Query:   133 NGGSQILCHFKLCSFGQECL 192
             +G  +  C  K CS  ++ L
Sbjct:   280 DGSDEHQCDCKTCSGSEKAL 299


to_Entrezto_Relatedto_Related >gi|7511716|pir||B59060  attractin - sooty sea hare
            Length = 58

Frame  3 hits (HSPs):        _______________________________________      
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40

  Plus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 8.9, P = 1.0
 Identities = 13/45 (28%), Positives = 24/45 (53%), Frame = +3

Query:     6 GQGESDCLIKTKHCDGPCGC*RNVISAQCS-----ECQSEEIQPSAG 131
             G   S C ++ ++CD   GC  + I  +C       CQ++E + ++G
Sbjct:     7 GNITSQCQMQHQNCDDANGC--DTIIEECKTSMVERCQNQEFESASG 51


to_Entrezto_Related >gi|7305525  ref|NP_038465.1| potential tumor suppressor
            >gi|5524734|gb|AAD44360.1|AF166350_1 (AF166350) ST7 protein [Homo
            sapiens]
            Length = 859

Frame  3 hits (HSPs):                         ___         __              
                        __________________________________________________
Database sequence:     |        |        |        |       |        |      | 859
                       0      150      300      450     600      750

  Plus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 9.9, Sum P(2) = 1.0
 Identities = 11/34 (32%), Positives = 14/34 (41%), Frame = +3

Query:    12 GESDCLIKTKHCDGPCGC*RNVISAQCSECQSEE 113
             G   C  + + CDG   C        C+ CQ EE
Sbjct:   384 GNWGCYTEQQRCDGYWHCPNGRDETNCTMCQKEE 417

 Score = 34 (12.0 bits), Expect = 9.9, Sum P(2) = 1.0
 Identities = 4/7 (57%), Positives = 7/7 (100%), Frame = +3

Query:   174 LWSRVFN 194
             +W+R+FN
Sbjct:   602 IWNRIFN 608


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.92

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.339   0.146   0.520  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.376   0.168   0.629  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.341   0.150   0.479  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.350   0.153   0.529  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.357   0.160   0.538  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.363   0.162   0.602  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       87        71       10.  57 3  12 22  0.091   31
                                                    27  0.12    31
   +2      0       88        72       10.  57 3  12 22  0.093   31
                                                    27  0.12    31
   +1      0       88        72       10.  57 3  12 22  0.093   31
                                                    27  0.12    31
   -1      0       88        72       10.  57 3  12 22  0.093   31
                                                    27  0.12    31
   -2      0       88        73       10.  57 3  12 22  0.095   31
                                                    27  0.12    31
   -3      0       87        72       10.  57 3  12 22  0.093   31
                                                    27  0.12    31


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  14
  No. of states in DFA:  579 (57 KB)
  Total size of DFA:  121 KB (128 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  108.84u 1.14s 109.98t  Elapsed: 00:00:37
  Total cpu time:  108.87u 1.17s 110.04t  Elapsed: 00:00:38
  Start:  Thu Feb 15 02:36:28 2001   End:  Thu Feb 15 02:37:06 2001



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000