The following table
was created as part of our research on the use of microsatellite DNA primer
in other taxa (species, genera, families, and orders). A summary of this
table, as well as additional information about microsatellite DNA loci,
appears in:
Scribner, K. T.,
and J. M. Pearce. 2000. Microsatellites: evolutionary and methodological
background and empirical applications at individual, population, and phylogenetic
levels. Pages 235-271, in A. Baker, editor. Molecular Methods in
Ecology. Blackwell Science Limited, London, England.
Table 1. Taxonomic
affiliation, publication reference, and use as heterologous primers as
conducted by the referenced author(s).
Taxonomic
group, species name |
Family |
Reference |
Cross-species
comparisons (S, G, F, O) 1 |
FUNGI |
|
|
|
Microbotyrum
violaceum |
Microbotryaceae |
Bucheli
et al. (1998) |
0000 |
Mycosphaerella
graminicola |
Docideaceae |
Owen
et al. (1998) |
0000 |
|
|
|
|
RED
ALGAE |
|
|
|
Gracilaria
gracilis |
Gracilariaceae |
Wattier
et al. (1997) |
2200 |
|
|
|
|
PLANTS |
|
|
|
Arabidopsis |
Brassicacaceae |
Bell,
Ecker (1994) |
0000 |
Symphonia
globulifera |
Clusiacaea |
Aldrich
et al. (1998) |
0000 |
Rhododendron
metternichii |
Ericaceae |
Naito
et al. (1998) |
0000 |
Quercus
macrocarpa |
Fagaceae |
Dow et
al. (1995) |
0000 |
Q.
myrsinifolia |
Fagaceae |
Isagi,
Suhandono (1997) |
3330 |
Q.
petraea |
Fagaceae |
Steinkellner
et al. (1997) |
3200 |
Gliricidia
sepium |
Leguminosae |
Dawson
et al. (1997) |
0000 |
Musa
acuminata |
Musaceae |
Lagoda
et al. (1998) |
3300 |
Swietenia
humilis |
Meliaceae |
White,
Powell (1997a,b) |
2200 |
Pinus
leucodermis |
Pinaceae |
Vendramin
et al. (1996) |
3220 |
P.
radiata |
Pinaceae |
Smith,
Devey (1994) |
0000 |
P.
sylvestris |
Pinaceae |
Soranzo
et al. (1998) |
0000 |
Aesulus
turbinata |
Rosidae |
Minami
et al. (1998) |
0000 |
Hemideina
maori |
Stenopelmatidae |
King
et al. (1998) |
3000 |
|
|
|
|
FLATWORMS |
|
|
|
Dugesia
polychroa |
Dugesiidae |
Ramachandran
et al. (1997) |
0000 |
|
|
|
|
ROTIFERS |
|
|
|
Brachionus
plicatilis |
Brachionidae |
Gómez
et al. (1998) |
0000 |
|
|
|
|
INSECTS |
|
|
|
Andrena
jacobi |
Andrenidae |
Paxton
et al. (1996) |
0000 |
Apis mellifera
and Bombus terrestris |
Apidae |
Estoup
et al. (1995) |
0000 |
Sitobion
avenae |
Aphididae |
Sunnucks
et al. (1997) |
3000 |
Phyllodecta vulgatissima
and P. vitellinae |
Chrysomelidae |
Batley
et al. (1998) |
0000 |
Anopheles
gambiae |
Culicidae |
Lehman
et al. (1996b) |
0000 |
Culex
pipiens quinquefasciatus |
Culicidae |
Fonseca
et al. (1998) |
0000 |
Drosophila
melanogaster |
Drosophilidae |
England
et al. (1996) |
0000 |
D.
melanogaster |
Drosophilidae |
Schug
et al. (1998) |
3000 |
Pseudomyrmex
pallidus |
Formicidae |
Peters
(1997) |
3000 |
Formica
lugubris |
Formicidae |
Chapuisat
(1996) |
3100 |
Solenopsis
invicta |
Formicidae |
Krieger,
Keller (1997) |
0000 |
Camponotus
ligniperda |
Formicidae |
Gertsch
et al. (1995) |
3000 |
Myrmica
tahoensis |
Formicidae |
Evans
(1993) |
0000 |
Ixodes
ricinus |
Ixodidae |
Delaye
et al. (1998) |
3000 |
Melitaea
cihxia |
Nymphalidae |
Palo
et al. (1995) |
0000 |
Bactrocera
tryoni |
Tephritidae |
Kinnear
et al. (1998) |
0000 |
Megastigmus
wachtli |
Torymidae |
Carcreff
et al. (1998) |
3000 |
Polistesbellicosus
and P. annularis |
Vespidae |
Strassmann
et al. (1997c) |
3000 |
Parachartergus
colobopterus |
Vespidae |
Strassman
et al. (1996a) |
3300 |
P.
colobopterus |
Vespidae |
Choudhary
et al. (1993) |
3000 |
|
|
|
|
CRUSTACEANS |
|
|
|
Chionoecetes
opilio |
Majidae |
Urbani
et al. (1998) |
3330 |
Penaeus
vannamei |
Penaeidae |
Garcia
et al. (1996) |
----
2 |
Penaeus
setiferus |
Penaeidae |
Ball
et al. (1998) |
3000 |
|
|
|
|
MOLLUSKS |
|
|
|
Loligo
forbesi |
Loliginidae |
Shaw
(1997) |
0000 |
Littorina
striata |
Littorinidae |
Winnepenninckx,
Backeljau (1998) |
1100 |
Melanoides
tuberculata |
Thiaridae |
Samadi
et al. (1998) |
0000 |
|
|
|
|
FISH |
|
|
|
Anguilla
anguilla |
Anguillidae |
Daemen
et al. (1997) |
0000 |
Acipenser and
Scaphirhynchus |
Acipenseridae |
May et
al. (1997a) |
3300 |
Pseudotropheus
zebra |
Chichlidae |
van Oppen
et al. (1997) |
0000 |
Clarias
gariepinus |
Clariidae |
Galbusera
et al. (1996) |
3300 |
Clupea
harengus pallasi |
Clupeidae |
O’Connell
et al. (1998) |
3110 |
Barbus spp. |
Cyprinidae |
Chenuil
et al. (1997) |
3000 |
Carassius
auratus |
Cyprinidae |
Zheng
et al. (1995) |
3310 |
Cyprinus
carpio |
Cyprinidae |
Crooijmans
et al. (1997) |
----
2 |
Esox
lucius |
Esocidae |
Miller,
Kapuscinski (1996) |
1000 |
Gasterosteus
aculeatus |
Gasterosteidae |
Rico
et al. (1993) |
0000 |
G. aculeatus |
Gasterosteidae |
Taylor
(1998) |
3330 |
Thalassoma
bifasciatum |
Labridae |
Wooninck
et al. (1998) |
0000 |
Rhomboplites
aurorubens |
Lutjanidae |
Bagley,
Geller (1998) |
2220 |
Dicentrarchus
labrax |
Moronidae |
García
de Léon et al. (1995) |
----
2 |
Poeciliopsis
occidentalis |
Poeciliidae |
Parker
et al. (1998) |
0300 |
Salmo
trutta |
Salmonidae |
Estoup
et al. (1993) |
0300 |
S.
marmonatus |
Salmonidae |
Snoj
et al. (1997) |
0000 |
S.
salar |
Salmonidae |
O’Reilly
et al. (1996) |
0000 |
S.
salar |
Salmonidae |
Slettan
et al. (1993) |
0000 |
S.
salar |
Salmonidae |
McConnell
et al. (1995) |
3300 |
Salvelinus
fontinalis |
Salmonidae |
Angers
et al. (1996) |
3000 |
Oncorhynchus
mykiss |
Salmonidae |
Morris
et al. (1996) |
3300 |
O.
nerka |
Salmonidae |
Scribner
et al. (1996) |
2200 |
O. mykiss and
O. clarki |
Salmonidae |
Wenburg
et al. (1996) |
3300 |
O.
gorbuscha |
Salmonidae |
Olsen
et al. (1998) |
2200 |
O.
kisutch |
Salmonidae |
Smith
et al. (1998) |
3300 |
Scophthalmus
maximus |
Scophthalmidae |
Coughlan
et al. (1996) |
0020 |
Pagrus
major |
Sparidae |
Takagi
et al. (1997) |
3000 |
Syngnathus
scovelli |
Sygnathidae |
Jones
and Avise (1997) |
2210 |
|
|
|
|
REPTILES |
|
|
|
Tilqua
rugosa |
Scincoidea |
Cooper
et al. (1997) |
0300 |
Sistrurus
catenatus |
Viperidae |
Gibbs
et al. (1997b) |
0000 |
Crotalus
horridus |
Viperidae |
Villarreal
et al. (1996) |
0000 |
Varanus
komodoensis |
Varanidae |
Ciofi,
Bruford (1998) |
0000 |
|
|
|
|
AMPHIBIANS |
|
|
|
Hyla
regilla |
Hylidae |
Call,
Hallett (1998) |
2220 |
Rana
luteiventris |
Ranidae |
Call,
Hallett (1998) |
2220 |
Bufo
calamita |
Bufonidae |
Rowe
et al. (1997) |
2100 |
|
|
|
|
BIRDS |
|
|
|
Somateria fischeri
and Anser albifrons |
Anatidae |
Fields,
Scribner (1997) |
3300 |
Branta canadensis
and Histrionicus histrionicus |
Anatidae |
Buchholtz
et al (1998) |
3300 |
Anas
platyrhynchos |
Anatidae |
Cathey
et al. (1996) |
3300 |
B.
canadensis |
Anatidae |
Cathey
et al. (1998) |
0200 |
Aphelocoma
ultramarina |
Corvidae |
Li et
al. (1997) |
3330 |
Corvus
kubaryi |
Corvidae |
Tarr
et al. (1998) |
3000 |
Clamator
glandarius |
Cuculidae |
Martinez
et al. (1998) |
0000 |
Cuculus
canorus |
Cuculidae |
Gibbs
et al. (1998) |
0000 |
Emberiza
schoeniclus |
Emberizidae |
Hannotte
et al. (1994) |
2220 |
Loxia
scotia |
Fringillidae |
Piertney
et al. (1998a) |
3330 |
Hirundo
rustica |
Hirundinidae |
Primmer
et al. (1995) |
3333
- see Primmer et al. (1996a) |
H.
rustica |
Hirundinidae |
Primmer
et al. (1996b) |
3000 |
Molothrus
ater |
Icteridae |
Gibbs
et al. (1997a) |
0000 |
Lanius
ludovicianus |
Laniidae |
Mundy,
Woodruff (1996) |
3330 |
Malurus
cyaneus |
Maluridae |
Double
et al. (1997) |
3330 |
Manorina
melanophrys |
Meliphagidae |
Painter
et al. (1997) |
3300 |
Minus
polyglottos |
Mimidae |
Hughes,
Moralez Deloach (1997) |
0000 |
Ficedula
hypoleuca |
Muscicapidae |
Primmer
et al. (1996b) |
3332 |
F.
hypoleuca |
Muscicapidae |
Ellegren
(1992b) |
3300 |
Dendroica
petechia |
Parulidae |
Dawson
et al. (1997) |
3330 |
Passer
domesticus |
Passeridae |
Neumann,
Wetton (1996) |
3020 |
Phalacrocorax
carbo |
Phalacrocoracidae |
Piertney
et al. (1998b) |
2000 |
Gallus
domesticus |
Phasianidae |
Moran
(1993) |
0000 |
G.
domesticus |
Phasianidae |
Gibbs
et al. (1997) |
----
2 |
Chiroxiphia
linearis |
Pipridae |
McDonald
and Potts (1994) |
0000 |
Forpus
passerinus |
Psittacidae |
Hughes
et al. (1998) |
2200 |
Struthio
camelus |
Struthionidae |
Kumari,
Kemp (1998) |
0000 |
S.
camelus |
Struthionidae |
Kimwele
et al. (1998) |
0002 |
Phylloscopus spp. |
Sylviidae |
Bensch
et al. (1997) |
3300 |
Lagopus
lagopus scoticus |
Tetraonidae |
Piertney,
Dallas (1997) |
3300 |
|
|
|
|
CROCODILIANS |
|
|
|
Alligator
mississippiensis |
Alligatoridae |
Glenn
et al. (1996) |
2220 |
|
|
|
|
PLACENTAL
MAMMALS |
|
|
|
Bubalus
bubalis |
Bovidae |
Moore
et al. (1995) |
0000 |
Ovis
aries |
Bovidae |
Bancroft
et al. (1995a) |
0000 |
Rangifer
tarandus |
Cervidae |
Wilson
et al. (1997) |
3330 |
Odocoileus
virginianus |
Cervidae |
DeWoody
et al. (1995) |
2210 |
Equus
cabalus |
Equidae |
Ellegren
et al. (1993) |
0000 |
Loxodonta
africana |
Elephantidae |
Nyakaana,
Arctander (1998) |
0200 |
Canis
spp. |
Canidae |
Mariat
et al. (1996) |
0000 |
Thalarctos
maritimus |
Ursidae |
Paetkau
et al. (1995) |
3000 |
Felis
catus |
Felidae |
Menotti-Raymond,
O’Brien (1995) |
3300 |
Lutra
lutra |
Mustelidae |
Dallas,
Piertney (1998) |
3311 |
Mustela
vison |
Mustelidae |
O’Connell
et al. (1996) |
3330 |
Delphinapterus
leucas |
Monodontidae |
Buchanan
et al. (1996) |
3330 |
Tursiops
truncatus |
Delphinidae |
Shinohara
et al. (1997) |
3330 |
Odobenus
rosmarus |
Odobenidae |
Buchanan
et al. (1998) |
0000 |
Halichoerus
grypus |
Phocidae |
Allen
et al. (1995) |
0000 |
H.
grypus |
Phocidae |
Gemmell
et al. (1997) |
3330 |
Phoca
vitulina |
Phocidea |
Coltman
et al. (1996) |
3300 |
P.
vitulina and Arctocephalus australis |
Phocidea
and Otariidae |
Gemmell
et al. (1997) |
3330 |
Megaptera
novaeangliae |
Balaenopteridae |
Palsbøll
et al. (1997) |
0300 |
M.
novaengliae and Physeter macrocephalus |
Balaenopteridae
and Physteridae |
Valsecchi,
Amos (1996) |
3330 |
P.
macrocephalus |
Physteridae |
Richard
et al. (1996) |
0000 |
Plecotus
auritus |
Vespertilionidae |
Burland
et al. (1998) |
3300 |
Erinaceus
europaeus |
Erinaceidae |
Becher,
Griffiths (1998) |
0000 |
Crocidura
russula |
Soricidae |
Favre,
Balloux (1997) |
3100 |
Sorex
araneus |
Soricidae |
Wyttenbach
et al. (1997) |
3100 |
Oryctolagus
cuniculus |
Leporidae |
Rico
et al. (1994) |
0000 |
Macaca
sinica |
Cercopithecidae |
Keane
et al. (1997) |
0000 |
M.
fuscata |
Cercopithecidae |
Inoue,
Teneaka (1993) |
3300 |
Alouatta
palliata |
Cibidae |
Ellsworth,
Hoelzer (1998) |
3300 |
Callithrix
jacchus |
Callitrichidae |
Nievergelt
et al. (1998) |
3300 |
Pan
paniscus |
Hominidae |
Gerloff
et al. (1995) |
0000 |
Homo
sapiens |
Homonidae |
Weber,
May (1989) |
0000 |
H.
sapiens |
Hominadae |
Coote
et al. (1996) |
3330 |
Mus
spp. |
Muridae |
Murine
Screening Set, 410 Mouse MapPairsTM |
----
2 |
Mus
spp. |
Muridae |
Hearne
et al. (1991) |
----
2 |
Mus
spp. |
Muridae |
Dietrich
et al. (1994; 1996) |
0000 |
Apodemus
spp. |
Muridae |
Markova
et al. (1998) |
3200 |
A.
argenteus |
Muridae |
Ohnishi
et al. (1998) |
0000 |
A.
flavicollis and Cllehrionomys glareolus |
Muridae |
Gockel
et al. (1997) |
3000 |
Microtus
pennsylvanicus |
Muridae |
Moncrief
et al. (1997) |
3300 |
Clethrionomys
rufocanus |
Muridae |
Ishibashi
et al. (1995) |
0000 |
Arvicola
terrestris |
Muridae |
Stewart
et al. (1998) |
2300 |
Spermophilus
brunneus |
Scuridae |
May et
al. (1997b) |
3000 |
S.
columbinanus |
Scuridae |
Stevens
et al. (1997) |
3300 |
|
|
|
|
MARSUPIALS |
|
|
|
Phascolarctos
cinereus |
Phascolarctidae |
Houlden
et al. (1996) |
0000 |
Magropus
eugenii |
Macropodidae |
Taylor,
Cooper (1998) |
3300 |
Potorous
longipes |
Macropodidae |
Luikart
et al. (1997) |
2200 |
Petrogale
assimilis |
Macropodidae |
Spencer
et al. (1995) |
3300 |
Lasiorhinus
kefftii |
Vombatidae |
Taylor
et al. (1994) |
0000 |
|
|
|
|
1 - Use as heterologous
primers when tested in the following: other species (S) or genera (G)
of the same taxonomic family; other families (F) of the same order or
other taxonomic order (O). Numeric code represents the following: 0 =
primers not tested; 1 = tested primers yielded no PCR product; 2 = primers
yielded PCR product of expected size, but were not tested for variability
or were found to be monomorphic when tested for variability; 3 = tested
primers yielded variable product of ≥ 2 alleles).
2 - Reference
not available. |