R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7304097|gb|AAF59135.1| (AE003838) CG8711 gene product [Drosophila
melanogaster]
Length = 773
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | 773
0 150 300 450 600 750
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 50/152 (32%), Positives = 77/152 (50%), Frame = +3
Query: 192 PHPPKKLLIKFHKGIPTLPPNFEEDTWAKLKSAIGAIFLKQPVSCDLXNLYQAVNDLCLY 371
P KK++IK K PTLP N+ +DT+ KL+ A+ AI L +P+ L LYQAV ++C +
Sbjct: 87 PGDVKKIVIKNFKDKPTLPDNYSKDTYVKLEEAVIAIQLSKPIKYSLEELYQAVVNMCSH 146
Query: 372 KMGGNLYQRIEKEC*STYILQHCS--PLXGQSPRFDCFSIR*LKNVWQDLC*PNV**FXG 545
KM LY ++ KE ++ ++ L G S + + + W C +
Sbjct: 147 KMDAQLYAKL-KELTEQHVKRNIKLKELTGGSMD-KLILLEKINHWWLSFCQQMIM-IRS 203
Query: 546 YTLFLDXTYVXTNNKCSVXMGHGFLQLFLQISFS 647
L++D TYV N+ G L LF +I F+
Sbjct: 204 IFLYMDRTYVLQNSTVHSIWDMG-LDLF-RIHFA 235
>gi|3327204|dbj|BAA31670.1| (AB014595) KIAA0695 protein [Homo sapiens]
Length = 717
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 717
0 150 300 450 600
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 44/131 (33%), Positives = 64/131 (48%), Frame = +3
Query: 237 PTLPPNFEEDTWAKLKSAIGAIFLKQPVSCDLXNLYQAVNDLCLYKMGGNLYQRIEKEC* 416
P LP N+ ++TW KLK A+ AI + +L LYQAV +LC YK+ NLY+++ + C
Sbjct: 10 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQIC- 68
Query: 417 STYILQHCSPLXGQSPRFDCFSIR*LKNVWQDLC*PNV**FXGYTLFLDXTYVXTNNKCS 596
+I S F ++ + WQ+ C + LFLD TYV N+
Sbjct: 69 EDHIKAQIHQFREDSLDSVLF-LKKIDRCWQNHCRQMIM-IRSIFLFLDRTYVLQNSMLP 126
Query: 597 VXMGHGFLQLF 629
G L+LF
Sbjct: 127 SIWDMG-LELF 136
>gi|7487763|pir||T12957 hypothetical protein T6H20.60 - Arabidopsis thaliana
>gi|5541668|emb|CAB51174.1| (AL096859) putative protein
[Arabidopsis thaliana]
Length = 247
Frame 3 hits (HSPs): _____________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 247
0 50 100 150 200
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.0018, Sum P(2) = 0.0018
Identities = 34/97 (35%), Positives = 42/97 (43%), Frame = +3
Query: 234 IPTLP-PN---FEEDTWAKLKSAIGAIFLKQPVSCDLXNLYQAVN-DLCLYKMGGNLYQR 398
IP P P+ + ED W LK AI AIFL +P L+ AVN C G LY+
Sbjct: 14 IPHTPKPDSRIYVEDAWTMLKPAIRAIFLDEPQDFACSGLFNAVNKSWCEKSSGEALYKL 73
Query: 399 IEKEC*STYILQHCSPLXGQSPRFDCFSIR*LKNVWQD 512
I +EC YI L Q + L+ W D
Sbjct: 74 ILEEC-EIYISAAIQSLESQCDTDPSLFLSLLEKCWLD 110
Score = 40 (14.1 bits), Expect = 0.0018, Sum P(2) = 0.0018
Identities = 9/21 (42%), Positives = 12/21 (57%), Frame = +1
Query: 580 QTTNVQSLWDMGFCNFSCKYL 642
QT S+WD+G S K+L
Sbjct: 127 QTVGPHSVWDLG-SELSPKHL 146
>gi|10944741|emb|CAC14090.1| (AJ299418) hypothetical protein [Arabidopsis
thaliana]
Length = 164
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 164
0 50 100 150
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.33, P = 0.28
Identities = 16/38 (42%), Positives = 24/38 (63%), Frame = +1
Query: 94 TTTPF*NPPPPLPMTPM-RPLSSPPICLAKKPLLPIPP 204
T P PPP+PMTP P++ PP+ +A P++P+ P
Sbjct: 61 TPPPMPMTPPPMPMTPPPMPMAPPPMPMASPPMMPMTP 98
>gi|2134214|pir||C58213 protamine II - American alligator
Length = 56
Frame -2 hits (HSPs): ____________________
Annotated Domains: __________
__________________________________________________
Database sequence: | | | | 56
0 20 40
__________________
Annotated Domains:
PROSITE PROTAMINE_P1: Protamine P1 signature. 1..12
__________________
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.36, P = 0.30
Identities = 13/23 (56%), Positives = 17/23 (73%), Frame = -2
Query: 162 RRRERAHWGHRKRRRGISKRRRR 94
RRR R +GHR+ RG S+RRR+
Sbjct: 28 RRRRRGRYGHRRHHRGHSRRRRK 50
>gi|5456980|dbj|BAA82400.1| (AB024370) ORF1 [TT virus]
Length = 51
Frame -2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 1.0, P = 0.63
Identities = 14/25 (56%), Positives = 16/25 (64%), Frame = -2
Query: 165 WRRRERAHWGHRKRRRGISKRRRRS 91
WRRR RA W R+R R RRRR+
Sbjct: 6 WRRRRRAPWRRRRRWRTRRTRRRRA 30
Score = 63 (22.2 bits), Expect = 6.0, P = 1.0
Identities = 18/43 (41%), Positives = 20/43 (46%), Frame = -2
Query: 210 ASWGDGEEWLFCETDWRRRERAHWGHRKRRRGISKRRRRSWSR 82
A W W T RR RA + R RRR + KRR R W R
Sbjct: 12 APWRRRRRW---RTRRTRRRRAAFRRRGRRRRVRKRRGR-WRR 50
>gi|12738252 ref|XP_012312.1| cullin 4A [Homo sapiens]
Length = 704
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 704
0 150 300 450 600
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 1.2, P = 0.69
Identities = 29/98 (29%), Positives = 46/98 (46%), Frame = +3
Query: 336 NLYQAVNDLCLYKMGGNLYQRIEKEC*STYILQHCSPLXGQSPRFDCFSIR*LKNVWQDL 515
+L+QAV +LC +K+ LY+++ + C ++ P S F ++ + WQD
Sbjct: 30 HLHQAVENLCSHKVSPMLYKQLRQAC-EDHVQAQILPFREDSLDSVLF-LKKINTCWQDH 87
Query: 516 C*PNV**FXGYTLFLDXTYVXTNNKCSVXMGHGFLQLF 629
C + LFLD TYV N+ G L+LF
Sbjct: 88 CRQMIM-IRSIFLFLDRTYVLQNSTLPSIWDMG-LELF 123
>gi|7940276|gb|AAF70835.1|AC003113_2 (AC003113) F24O1.6 [Arabidopsis thaliana]
Length = 70
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 1.3, P = 0.72
Identities = 18/39 (46%), Positives = 20/39 (51%), Frame = +1
Query: 91 RTTTPF*NPPPPLPMTPM-RPLSSPPICLAKKPLLPIPPR 207
R PF +PPPP P P RP PP +P P PPR
Sbjct: 8 RHPPPFHHPPPPRPPPPEPRPPPPPP---GPQPPPPPPPR 44
>gi|4760573|dbj|BAA77347.1| (AB019588) endo-beta-1,4-glucanase [Nasutitermes
takasagoensis]
Length = 89
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 89
0 20 40 60 80
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.6, P = 0.81
Identities = 24/61 (39%), Positives = 29/61 (47%), Frame = -1
Query: 208 FLGGWGGVAFLRDRLAAT-RAGALGSSEAAAGDF-KTASSFLESIDFAFFIGGDSFVLDI 35
FLG WG + + T +A LG S A+ F KT ID+A GG SFV
Sbjct: 24 FLGEWGSLRSAANAALITLQAADLGLSPASYRQFAKT------QIDYALGDGGRSFVCGF 77
Query: 34 NNN 26
NN
Sbjct: 78 GNN 80
>gi|5456971|dbj|BAA82399.1| (AB024366) ORF1 [TT virus]
Length = 51
Frame -2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.7, P = 0.81
Identities = 14/25 (56%), Positives = 16/25 (64%), Frame = -2
Query: 165 WRRRERAHWGHRKRRRGISKRRRRS 91
WRRR RA W R+R R RRRR+
Sbjct: 6 WRRRRRAPWRRRRRWRIRRPRRRRA 30
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Frame = -2
Query: 165 WRRRERAHWGHRKR-------RRGISKRRRRSWSR 82
WRRR RA W R+R RR + RRRR+ R
Sbjct: 6 WRRRRRAPWRRRRRWRIRRPRRRRAAYRRRRTRRR 40
>gi|100216|pir||S14975 extensin class II (clone uJ-2) - tomato
>gi|1345538|emb|CAA39216.1| (X55686) extensin (class II)
[Lycopersicon esculentum]
Length = 82
Frame 1 hits (HSPs): __________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
__________________
Annotated Domains:
DOMO DM05291: 12..82
__________________
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 2.2, P = 0.88
Identities = 16/41 (39%), Positives = 20/41 (48%), Frame = +1
Query: 82 STPRTTTPF*NPPPPLPMTPMRPLSSPPICLAKKPLLPIPP 204
S P T + +PPPP P P SSPP +P+PP
Sbjct: 25 SPPPPTYYYSSPPPPSPSPPPPTYSSPPPPPPFYENIPLPP 65
>gi|2147979|pir||S66275 proline-rich protein - Solanum brevidens (fragment)
>gi|927294|gb|AAC49600.1| (U30304) proline-rich protein [Solanum
brevidens]
Length = 240
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 2.6, P = 0.93
Identities = 23/41 (56%), Positives = 26/41 (63%), Frame = +1
Query: 82 STPR--TTTPF*NPPPPLPMTPMRPLSSPPICLAKKPLLPIPP 204
STP+ TT PF P PP P TP P+ SPPI P+ PIPP
Sbjct: 23 STPKPPTTPPF-TPKPPSP-TP--PIVSPPIVYP--PITPIPP 59
>gi|5456996|dbj|BAA82402.1| (AB024380) ORF1 [TT virus]
Length = 52
Frame -2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.6, P = 0.97
Identities = 12/21 (57%), Positives = 14/21 (66%), Frame = -2
Query: 144 HWGHRKRRRGISKRRRRSWSR 82
+W R+RRRG K RRR W R
Sbjct: 4 YWWRRRRRRGWWKPRRRRWRR 24
Score = 62 (21.8 bits), Expect = 7.7, P = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Frame = -2
Query: 165 WRRRERAHWGHRKRRRGISKRRRRSWSR 82
WR R R G R+ RR + +RR R W R
Sbjct: 25 WRARRRRPAGRRRARRRVRRRRGR-WRR 51
>gi|5457005|dbj|BAA82403.1| (AB024383) ORF1 [TT virus]
Length = 52
Frame -2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.6, P = 0.97
Identities = 12/21 (57%), Positives = 13/21 (61%), Frame = -2
Query: 144 HWGHRKRRRGISKRRRRSWSR 82
HW R+RR G K RRR W R
Sbjct: 4 HWWRRRRRTGWWKPRRRRWRR 24
>gi|8571115|gb|AAF76750.1|AF216972_1 (AF216972) p8 protein [Homo sapiens]
Length = 77
Frame 1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.6, P = 0.97
Identities = 17/47 (36%), Positives = 20/47 (42%), Frame = +1
Query: 70 RRNLSTPRTTTPF*NPPPPLPMTPM--RPLSSPPICLAKKPLLPIPP 204
R TP + P P PP P P RP +PP A +P P P
Sbjct: 27 RSQAQTPPRSVPRLRPAPPPPSRPPQPRPGPAPPTPPAARPARPASP 73
>gi|11055119|gb|AAG27964.1| (AF187547) protamine P1 [Aepyprymnus rufescens]
Length = 61
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 4.6, P = 0.99
Identities = 14/28 (50%), Positives = 19/28 (67%), Frame = -2
Query: 165 WRRRERAHWGHRKRRRGISKRRRRSWSR 82
+R R R + G R+RRR +RRRR +SR
Sbjct: 25 YRSRRRRYRGSRRRRRS-RRRRRRGYSR 51
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 16/27 (59%), Positives = 20/27 (74%), Frame = -2
Query: 162 RRRERAHWGHRKRR-RGISKRRRRSWSR 82
RRR R+ + R+RR RG S+RRRRS R
Sbjct: 18 RRRRRSRYRSRRRRYRG-SRRRRRSRRR 44
>gi|7486298|pir||T04552 hypothetical protein F28J12.220 - Arabidopsis thaliana
>gi|2832661|emb|CAA16736.1| (AL021710) pherophorin - like protein
[Arabidopsis thaliana] >gi|7268650|emb|CAB78858.1| (AL161549)
pherophorin-like protein [Arabidopsis thaliana]
Length = 637
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 637
0 150 300 450 600
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 5.0, P = 0.99
Identities = 22/61 (36%), Positives = 34/61 (55%), Frame = +1
Query: 88 PRTTTPF*NPPPPLPMTPMRPLSSPPICLAKKPLLPIPP---RSFSLSSTKVYQHCPQIL 258
P+ + P PPPP P P+ PP ++K P P PP +S S++S KV + P+++
Sbjct: 288 PQKSIP---PPPPPPPPPLLQQPPPPPSVSKAPPPPPPPPPPKSLSIASAKV-RRVPEVV 343
Query: 259 RRIH 270
H
Sbjct: 344 EFYH 347
>gi|11994522|dbj|BAB02586.1| (AP001309) gene_id:MUO10.13~unknown protein
[Arabidopsis thaliana]
Length = 129
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 129
0 50 100
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 5.4, P = 1.0
Identities = 21/52 (40%), Positives = 30/52 (57%), Frame = +1
Query: 67 RRRNLSTPRTTTPF*NPPPPLPMTPMRPLS-SPPICLAKKPLLPIPPRSFSLS 222
R R+ +PR+ P PPPP + P + SPP + K +LP PPRS ++S
Sbjct: 19 RVRSPPSPRSVMP---PPPPKTIAPPPSKTMSPP---SSKSMLPPPPRSKTMS 65
>gi|7488174|pir||A71438 probable resistance protein - Arabidopsis thaliana
Length = 906
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | || 906
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 5.9, P = 1.0
Identities = 16/38 (42%), Positives = 24/38 (63%), Frame = +1
Query: 94 TTTPF*NPPPPLPMTPM-RPLSSPPICLAKKPLLPIPP 204
T P PPP+PMTP P++ PP+ +A P++P+ P
Sbjct: 61 TPPPMPMTPPPMPMTPPPMPMAPPPMPMASPPMMPMTP 98
>gi|5456964|dbj|BAA82398.1| (AB024362) ORF1 [TT virus]
Length = 52
Frame -2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.0, P = 1.0
Identities = 12/24 (50%), Positives = 15/24 (62%), Frame = -2
Query: 165 WRRRERAHWGHRKRRRGISKRRRR 94
WRRR R W +RRR ++R RR
Sbjct: 6 WRRRRRRGWWKPRRRRWRTRRTRR 29
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 11/19 (57%), Positives = 13/19 (68%), Frame = -2
Query: 144 HWGHRKRRRGISKRRRRSW 88
+W R+RRRG K RRR W
Sbjct: 4 YWWRRRRRRGWWKPRRRRW 22
>gi|213591|gb|AAA49470.1| (M62415) HPLC6 [Pseudopleuronectes americanus]
Length = 83
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.0, P = 1.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Frame = +1
Query: 100 TPF*NPP----PPLPMTPMRPLSSPPICLAKKPLLPIP-PRSFSLSSTKVYQHCPQILRR 264
TP PP PPLP P P +PP+ P P P P S + Q P++ R
Sbjct: 24 TPQPKPPQQQLPPLPQPPQTPPLTPPLQPPLPPPTPKPLPNSLPPTPPPPQQPPPEVKDR 83
>gi|2134215|pir||D58213 protamine III - American alligator
Length = 43
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 43
0 20 40
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.0, P = 1.0
Identities = 11/24 (45%), Positives = 16/24 (66%), Frame = -2
Query: 165 WRRRERAHWGHRKRRRGISKRRRR 94
+RRR ++G R+ RG +RRRR
Sbjct: 14 YRRRRGGYYGRRRHHRGSQRRRRR 37
>gi|9630894 ref|NP_047491.1| AcMNPV orf91 [Bombyx mori nuclear polyhedrosis
virus] >gi|7460746|pir||T41831 AcMNPV orf91 - Bombyx mori nuclear
polyhedrosis virus (isolate T3) >gi|3745913|gb|AAC63760.1|
(L33180) AcMNPV orf91 [Bombyx mori nuclear polyhedrosis virus]
Length = 154
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 6.2, P = 1.0
Identities = 19/35 (54%), Positives = 20/35 (57%), Frame = +1
Query: 85 TPRTTTPF*NPPPPLPMTPMRPLSSPPICLAKKPL 189
TP T TP PPPP P TP P S PP + KPL
Sbjct: 39 TPPTPTP--TPPPPPPPTPTPPPSPPP---SPKPL 68
>gi|465764|sp|P34309|YKR3_CAEEL HYPOTHETICAL 11.3 KD PROTEIN C06G4.3 IN
CHROMOSOME III >gi|630526|pir||S44750 C06G4.3 protein -
Caenorhabditis elegans >gi|409294|gb|AAA27941.1| (L25598) putative
[Caenorhabditis elegans]
Length = 113
Frame -3 hits (HSPs): ___________________
Annotated Domains: _____________________ _______________
__________________________________________________
Database sequence: | | | | 113
0 50 100
__________________
Annotated Domains:
PRODOM PD050162: YKR3_CAEEL 1..47
PRODOM PD047026: YKR3_CAEEL 81..112
__________________
Minus Strand HSPs:
Score = 73 (25.7 bits), Expect = 6.4, P = 1.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Frame = -3
Query: 209 LLGGMGRSGFFARQIGGDESGRIGVIGSGGGGFQNGVVVLGVDR 78
+LGG+ S FF GG G G G G GGF G+ + + R
Sbjct: 42 ILGGLA-SNFFGGGGGGGGGGGGGGFGGGNGGFGGGIFIFKIVR 84
>gi|1044963|gb|AAB35063.1| protamine [Monodonta turbinata, gonads, Peptide, 106
aa]
Length = 106
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 6.9, P = 1.0
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = -2
Query: 162 RRRERAHWGHRKRRRGISKRRRRSWSR 82
RRR R+ G R+RRR S+RRRRS SR
Sbjct: 31 RRRSRSA-GRRRRRRTASRRRRRSASR 56
>gi|7508786|pir||T15122 hypothetical protein W01H2.2 - Caenorhabditis elegans
>gi|1946983|gb|AAB52886.1| (AF000192) W01H2.2 gene product
[Caenorhabditis elegans]
Length = 59
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 59
0 20 40
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 7.7, P = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Frame = +2
Query: 68 EGEIYRLQERRRRFEIPRRRFR*PQCARSRRRQSVSQKSHSSPSP 202
EGE + RR +E ++ FR P A + R Q + HS+P+P
Sbjct: 3 EGEACQPNPRRLVWECEKKNFR-PPAAVAARCQLRTTSGHSTPAP 46
>gi|11055113|gb|AAG27961.1| (AF187544) protamine P1 [Lagorchestes hirsutus]
Length = 65
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 65
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 7.7, P = 1.0
Identities = 19/39 (48%), Positives = 25/39 (64%), Frame = +2
Query: 80 YRLQERRR-RFEIPRRRFR*PQCARSRR--RQSVSQKSHS 190
YR Q RRR R+ RRR+R Q RSRR R+ S++ +S
Sbjct: 15 YRRQRRRRSRYRSRRRRYRRRQ-RRSRRGRRRGYSRRRYS 53
>gi|11055121|gb|AAG27965.1| (AF187548) protamine P1 [Potorous longipes]
Length = 61
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 7.7, P = 1.0
Identities = 15/29 (51%), Positives = 20/29 (68%), Frame = +2
Query: 80 YRLQERRR-RFEIPRRRFR*PQCARSRRR 163
YR + RRR R+ RRR+R + +RSRRR
Sbjct: 15 YRRRRRRRSRYRSRRRRYRGSRRSRSRRR 43
>gi|7290578|gb|AAF46028.1| (AE003434) CG12732 gene product [Drosophila
melanogaster]
Length = 153
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 8.0, P = 1.0
Identities = 17/38 (44%), Positives = 23/38 (60%), Frame = +1
Query: 115 PPPPLPMTPMRPLSSPPICLAKKPLLPIPPRSFSLSST 228
PPPP+P P+ P PP+ + P+ P+PP S SST
Sbjct: 25 PPPPMPPMPVIP-PLPPMPVIP-PIPPLPPMVVSTSST 60
>gi|2462823|gb|AAB72158.1| (AF000657) unknown protein [Arabidopsis thaliana]
>gi|2829907|gb|AAC00615.1| (AC002311) Unknown protein [Arabidopsis
thaliana]
Length = 144
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 144
0 50 100
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 8.6, P = 1.0
Identities = 20/46 (43%), Positives = 21/46 (45%), Frame = +1
Query: 112 NPPPPLPMTPMRPLSSPPICLAKKPLLPIPPRSFSLSSTKVYQHCP 249
NPPPP P P P PP C P LP PP KV +CP
Sbjct: 58 NPPPPSPPPPSPP---PPAC-PPPPALPPPPPK------KVSSYCP 93
>gi|123699|sp|P15342|HSP2_HORSE SPERM HISTONE P2A (ST2A) >gi|108203|pir||S10754
protamine St2a - horse
Length = 62
Frame 2 hits (HSPs): ______________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
__________________
Annotated Domains:
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 9..61
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 16/30 (53%), Positives = 19/30 (63%), Frame = +2
Query: 77 IYRLQERRRRFEIPRRRFR*PQCARSRRRQ 166
+YRL RRRR+ RRR R P C R R R+
Sbjct: 21 LYRL--RRRRYRSSRRRRRRP-CRRRRHRR 47
>gi|123704|sp|P15343|HSP3_HORSE SPERM HISTONE P2B (ST2B) >gi|108204|pir||S10755
protamine St2b - horse
Length = 58
Frame 2 hits (HSPs): ________________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | 58
0 20 40
__________________
Annotated Domains:
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 3..52
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 16/30 (53%), Positives = 19/30 (63%), Frame = +2
Query: 77 IYRLQERRRRFEIPRRRFR*PQCARSRRRQ 166
+YRL RRRR+ RRR R P C R R R+
Sbjct: 17 LYRL--RRRRYRSSRRRRRRP-CRRRRHRR 43
>gi|1170399|sp|P42142|HSP1_MACRU SPERM PROTAMINE P1 >gi|598427|gb|AAA74616.1|
(L35447) protamine P1 [Macropus rufus] >gi|1582114|prf||2117429G
protamine P1 [Macropus rufus]
Length = 60
Frame 2 hits (HSPs): __________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 60
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..58
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..58
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 17/40 (42%), Positives = 25/40 (62%), Frame = +2
Query: 80 YRLQERRR-RFEIPRRRFR*PQCARSRR--RQSVSQKSHS 190
YR + RRR R+ RRR+R + RSRR R+ S++ +S
Sbjct: 15 YRRRRRRRSRYRSQRRRYRGRRRRRSRRGRRRGYSRRRYS 54
>gi|5441235|dbj|BAA82345.1| (AB024360) ORF1 [TT virus]
>gi|5456955|dbj|BAA82397.1| (AB024361) ORF1 [TT virus]
Length = 53
Frame -2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 53
0 20 40
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = -2
Query: 165 WRRRERAHWGHRKRRRGISKRRRRSWSR 82
WR R R +RRR + +RRR W R
Sbjct: 25 WRTRRRRPRRRYRRRRHVRRRRRGRWRR 52
>gi|11055091|gb|AAG27950.1| (AF187533) protamine P1 [Macropus parryi]
Length = 61
Frame 2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.9, P = 1.0
Identities = 17/40 (42%), Positives = 25/40 (62%), Frame = +2
Query: 80 YRLQERRR-RFEIPRRRFR*PQCARSRR--RQSVSQKSHS 190
YR + RRR R+ RRR+R + RSRR R+ S++ +S
Sbjct: 15 YRRRRRRRSRYRSRRRRYRGRRRXRSRRGRRRGYSRRRYS 54
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.336 0.147 0.480
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.151 0.520
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.151 0.541
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.152 0.519
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.151 0.560
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.338 0.150 0.474
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 216 210 10. 77 3 12 22 0.099 35
31 0.11 38
+2 0 217 212 10. 77 3 12 22 0.10 35
31 0.11 38
+1 0 217 212 10. 77 3 12 22 0.10 35
31 0.11 38
-1 0 217 211 10. 77 3 12 22 0.10 35
31 0.11 38
-2 0 217 212 10. 77 3 12 22 0.10 35
31 0.11 38
-3 0 216 210 10. 77 3 12 22 0.099 35
31 0.11 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 35
No. of states in DFA: 595 (59 KB)
Total size of DFA: 237 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 229.40u 1.34s 230.74t Elapsed: 00:00:39
Total cpu time: 229.44u 1.39s 230.83t Elapsed: 00:00:39
Start: Wed Oct 3 11:43:17 2001 End: Wed Oct 3 11:43:56 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000