Reference SNP(refSNP) Cluster Report: rs1318646

Reference SNP(refSNP) Cluster Report: rs1318646

refSNP ID: rs1318646
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	88/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss2086469 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1318646 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss2086469	TSC-CSHL\|TSC0255997		fwd/T	A/G	ttattgcaactgcagaccgttacctggtac	ctggctgctacctccctcactcttgtcaga	10/19/00	10/10/03	88	Genomic			95 %
ss3940811	SC_JCM\|AL356110.1_91362		rev/B	C/T	tctgacaagagtgagggaggtagcagccag	gtaccaggtaacggtctgcagttgcaataa	09/25/01	10/10/03	100	Genomic			unknown

Fasta sequence (Legend)

 GAGACCAGGG GGCCTAGTGT TTCAGCACAG CCTGGGCAAT TGGAATGCAG GGTTTCTAAG
 ATTCCATGAC ACCCCCACCT TCTAATTCTG TTATTGCAAC TGCAGACCGT TACCTGGTAC
 R
 CTGGCTGCTA CCTCCCTCAC TCTTGTCAGA GTCGGAGCTA CAGGCAGTGC CTTCAGCTCT
 GAGCTCAGGC ATCCCGGTCC CTGTTTTTGC GGTTAAGGAC TCTAAAGTGT TGTGTCGTGT
 TCATCAACTT TTTCTCAACT GTAAGTTAAC AATTCCAGTA ATTGTCATCT CTCAGTCCTG
 ATTAAACCTA ATTGATTTCA CTATTTTTTG ACCCATCATG TGTCTGGGTT TCTTCTCCCC
 AGTCCCTGGC TCTACCTCTT CTGCCACAAA CGTCAGCATG GTGGTATCTG CCGACCCTTT
 GTCCAGCGAG AGGGCAGAGA TGAACATCCT AGAAATCAAC CAGGAATTGC GCTCGCA

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs1318646 was not linked to the human genome 36.3 because it aligned to more than 2 locations on the genome.

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NT_019273.18	4694346	108588184	minus	C	ref_assembly	reference	reference	view	120
1	NT_019273.18	4826148	108719986	plus	G	ref_assembly	reference	reference	view	120
1	NT_019273.18	4900631	108794469	plus	A	ref_assembly	reference	reference	view	120
5	NW_001838951.1	14862237	80780346	plus	G	alt_assembly_8	HuRef	HuRef	view	120
Un	NW_921412.1	6694	unplaced	plus	G	alt_assembly_1	Celera	Celera	view	120

NCBI Resource Links

Submitter-Referenced
GenBank
AL356110 AC013627 AL359258 AL390038

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AL359258.23 AL390038.18 BX323851.7 NC_000001.9	AC013627.3 AC208867.2 AL356110.1 AL672086.13 BX537151.1

UniGene Cluster ID
511849 512038

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .