prokMSA_id: 155795
prokMSAname: Porphyra yezoensis
GenBank ACCESSION: AP006715.1
GenBank GI: 90818941
Pubmed/Medline:
RDP_id: S000674561
NCBI_tax_id: 2788
Study_id: 27571
Chimera Test Result
bellerophon=checked, not chimeric
bel3_div_ratio=
warning=duplicate sequence
G2_chip_tax_string=Unclassified
Hugenholtz_tax_string=Unclassified
Ludwig_tax_string=Unclassified
Pace_tax_string=Unclassified
RDP_tax_string=Bacteria; Cyanobacteria; Cyanobacteria; Chloroplast; Cryptomonadaceae
ncbi_tax_string=Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra
authors(alphabetically)=Fukuda,S., Kobayashi,M., Kobayashi,T., Kunimoto,M., Morishima,K., Nakayama,I., Ohara,I., Okazaki,T., Yoshikawa,M.
blast_perc_ident_to_template=96.6
chi_checked=1
contact_info=National Research Institute of Fishery Science, Aquatic genomics research center, Kanazawa-ku Fukuura 2-12-4, Yokohama, Kanagawa 236-8648, Japan
create_date=30-MAR-2006
decision=named_isolate
description=Porphyra yezoensis chloroplast DNA, complete genome
longest_insertion=1
ncbi_acc=AP006715
non_ACGT_percent=0.0000
organism=Porphyra yezoensis
perc_ident_to_invariant_core=99.2
prokMSA_id=155795
prokMSAname=Porphyra yezoensis
replaced_by=154530
small_gap_intrusions=14
source=chloroplast Porphyra yezoensis
span_aligned=148544..150059
submit_date=20-NOV-2003
template=19992
timestamp=20060405094747
title=Whole genome sequence of Porphyra yezoensis chloroplast
unaligned_length=1516
update_date=30-MAR-2006
>Porphyra yezoensis prokMSA_id:155795 AP006715.1
TTTAATATACTGGATACCACGGAGAGTTTGATCCTGGCTCAGGATGAACG
CTGGCGGTATGCTTAACACATGCAAGTCGAACGGAAGTTTGTAAAAACTT
TAGTGGCGGACGGGTGAGTAACACGTGAGAATCTACCTTTAGGAGAGGCA
TAACAGTTGGAAACGATTGCTAAAGCCTCATATGCTGCAAAGTGAAAAGA
GAAATCTGCCTGAAGATGAGCTCGCGCCTGATTAGCTAGTTGGTAAAGTA
ATGGCTTACCAAGGCGACGATCAGTAGCTGGTTTGAGAGGACGACCAGCC
ACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGG
AATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGAT
GAAGGCTCGTGGGTTGTAAACCTCTTTTCTTAGGGAAGAAGTTCTGACGG
TACCTAAGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATA
CGGAGGATGCAAGCGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGG
TTGCTCAGTAAGTCTGCTGTTAAAGATTGGGGCTCAACCCCAAAGCAGCA
GTGGAAACTGCTAGGCTAGAGTATGGTAAGGGTAAAGGGAATTCCCAGTG
TAGCGGTGAAATGCGTAGATATTGGGAAGAACACCAGAGGCGAAAGCGCT
TTACTAGACCATTGCTGACACTCAGAGACGAAAGCTAGGGGAGCGAATGG
GATTAGATACCCCAGTAGTCCTAGCTGTAAACGATGGATACTAGATGTTG
CGCGTATTGACCCGTGCAGTATCGTAGCTAACGCGTTAAGTATCCCGCCT
GGGGAGTACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGC
ACAAGCCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTA
CCAGGACTTGACATGTCATAAATTTTCTTAAAAAAGAAAAGTGCCTTCGG
GAATATGAACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGAT
GTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTTAGTTGCCATCA
TTTAGTTGGGCACTCTAAAAAGACTGCCGGTGACAAACCGGAGGAAGGTG
AGGATGACGTCAAGTCAGCATGCCCCTTATGTCCTGGGCTACACACGTGC
TACAATGGTCGTGACAAAGAGTTGCAAACTTGCAAAAGCTAGCTAATCTC
ATAAACACGACCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAG
GTGGAATCGCTAGTAATCGCCGGTCAGCTACACGGCGGTGAATCCGTTCC
CGGGCCTTGTACACACCGCCCGTCACACCATGGGAGCTGGCTACGCCCGA
AGTCGTTACCCTAACCTTTTGGAGGGGGGCGCCTAAGGCAGAGCTAGTGA
CTGGGGTGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATC
ACCTCCTTTTAGGGAA
>Porphyra yezoensis prokMSA_id:155795 AP006715.1
..................................................
.........................................TATACTGGA
TACCACGGAGAGTTT-GA--T-CC-T-G-GCTC-AG-GA-TGAA-C-GC-
-TGG-C--G-GT-A-TG--C----T-T--AACACA-T-GC-A-AGT-CGA
-A-CGG---------A-A--------------------------------
----------GT--------------------------------------
--------------TTGTA-------------------------------
-------------------------------------------------A
AAAC------------------------------TT--T--AG-T-GG-C
-GG-A--C-------------GGG-TGAGT-A--AC-AC-G-T-G-AG--
-A-A--T-CT-A--C-C-TTT--AG-G-----------------------
-------------------------------------------A-GA---
-GGC-AT-AA-CAG-------------------------T-T-G------
-----------------GAA-A---CGA-TTG-CTAA--A---GC-C-TC
-AT-A----------T----------------------------------
------------------------GC-T----------------------
--------------------------------------------------
-----------------------------------------------G-C
A-A-----------------------------------------------
--------------------------------------------------
-------------------------------------A-G-T--------
--------------------------------------------------
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---------------------------GAAA---AG-A------------
--------------------------------------------------
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----------------------GAA-A-----------------------
--------------------------------------------------
--------------------------------------------------
----T--C----TG--------------C----C-T-----GA-A--GAT
---G-A-----G-CTC-GCG--C-CTG--A------TT--A--G-CT-A-
---G---TTGG-T-A-AA-G-T----AAT-GG-C-T-T-ACCA--A-GG-
C-G--A-CG-A------------TCA-G-T------AG-CT-G-G-TTT-
G-AG----A--GG-AC--G-AC-C-AG-CCAC-A-CTGGG--A-C-TG-A
-GA-C-AC-G-G-CCCAGA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TG---GG-G-A-ATT-TTCCG-C-AA-T-GG--GC-GA-A----A-G-
-CCT-GA-CG-GA-GCAA-TACC-G-CG-T---G-A-G--G--GA-T-G-
-A--A-G-GCTC------G-TG---------G-G-T-T-G-T--A---AA
-C-CTC--------TT-TT-C-T--T-AGG----GA-A--G---A-----
---------------A--G---T-T-------------------------
--CT-GA-CG-GT-A-C-CT-A-AG-G---------AA-----------T
AAGC-ATC-GG-C-TAA---C--T-CCGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GG-AG-GAT-GCA-A-G-CG-TTAT-C-C
GG-AA-TC-A--C-T--GGGC-GTA----AA-GCGT-CT--G-TA-G-G-
T-T------------G--C-TC---AGT-AA----G-T-C-T---G-CTG
-TT-A-AA-GA--TT-GGG-G-----------------------------
---------------------------------------CT-C-AA----
--------------------------------------------------
-------------------CC-C-C-AA-A--G---CA-G-C-A-G-T--
------G--GA-A-A-C-T-G-CTA--G-G-C------------------
--------------------------------------------------
--------------------------------------------------
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---------------------T-A-G-A-G-T-A-----T-GG--TA-A-
G------------G-GT-A-AA-G----GG--AATT-CCC-A-GT--GT-
A-GCG-GTGAAA-TG-CGT-AGAT-A-TT-G-GGA--AG-A-AC-A-CC-
AG--A--G--GC-GAA-A---GC---G----C--T-T-TACTA------G
-AC-CA--------------------------------------------
------------------TT-G-C-T--GA--CA-----CT-CA-GA--G
-A-CGA--AA-G-C--------------T-AGGG-GAG-C-G-AATG--G
G-ATTA-G-ATA-C-----CC-C-A-GTA-G-T----C-CT--A-G-CTG
-T-AAA--C-GATG-GA--TA-CT---------A-GA--T--G-T-TG-C
-GC-G---------------------------------------------
--------------------------------------------TATTGA
CC------------------------------------------------
--------------------------------------------------
------------------------------------------------C-
G-TG--C-A-G-T-AT-C------GT--A----GC-TAA--CG-C-G-T-
-T--AA-GT--A----T-CCC-GCC-T-G-GG-GAG-TA---CGC-----
T-C--G-C-A-A-GAG-T--GAA-ACTC-AAA---------GGAA-TTG-
ACGGG-G-G-CCCG----C-A--C-A-AGCC-GGT-G--G--AG-CA-T-
-GT-GGT-TT-AATT-C-G-ATG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CC-AGGAC-TT-G-AC-A-T-G--------------TCA-T-A------
-------A-AT-T-T-T--C---T-TA-A-A-A--A-A-G-AA-A-A-G-
-T-G-----C--------------------------------------C-
-TTCG------------------------------------------GG-
---A----A---TA-TGA---A--CA------------------------
---------------------------C-A-G-G-T-GGTG-CA-TGG-C
T--GTC-GTC-A-GC-TC---G-TG--T-C-GTGA-GA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TG--T
---TTTTAG--T-T-G-C-C---AT-C-A--T------------------
--------------------------------------------------
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----------------TTAG------------------------------
--------------------------------------------------
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--------------------------------------------------
----------------------------------T----T-G--------
----G----G---C-A--CT---------------C-T-A-AAA-A--G-
-AC-T-G-CCG--G-T----------------------------------
--G-A---CAA----------------------------------A-C-C
-G--G-A-GG-A--AGG-T--GAGG-A-TGAC-GTC--AAGT-C---AGC
-A-T-G-C-C-C-CTT----AT-G--TC-C-T-GG-GC-TA-CAC-ACGT
G-C--TA--CAATG---G-TCGT-G-A--C-AAA-GA-GT----------
--------------------------------------------------
--------------------------------------T-G-C-A-A--A
-CTTG-C-AA---------------------------------------A
-AG-C-T--------------A-G-CT---A----------A--TCT-C-
-----A-T-AAACACGA-C-C---T-CAG-TTC--------GGA-T-TGC
AG-GC--T-GCAA-CT-C--------------------------------
--------------------------------------------------
---------------G-CCTGC-A-T-G-AA-G-GT-GGAAT-CG-C-TA
--G-TA-AT-C-G-C----CGG-TC-A-G-CT------AC--ACG-GC-G
-GT-G-AAT-CCGT-T-CCCGGGCCT-TGTA----CACACCG-CCC-GTC
-----A---CA--CCA-TG-GG-A--G---CTG-G-CT-AC-GCC--C-G
AA------G--T-CGT-TA-C-C-C-TAAC-C-T----------------
---------------------------------------------T-TTG
G-------------------------------------------------
--------------------------------------------------
---AG----GG----G---GG-CGC--CT--AAG-G----C-AGA-GC-T
AG------------------------TG--ACT-GGGG-TG-AAG-TCGT
AACAA-GGTAG-CCGT-ACTGGAA-GGTG-CGGC-TGGATCACCTCCTTT
T.................................................
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