1 Archaea 1290 seqs 1.1 Crenarchaeota 289 seqs 1.1.1 C1 100 seqs 1.1.1.1 C1a 61 seqs 1.1.1.1.1 Unclassified 61 seqs 1.1.1.1.1.1 sf_1 61 seqs 1.1.1.1.1.1.2583 OTU 2 seqs prokMSA_id:1128 U71111.1 Prof Marti cruise North Atlantic at depth 500m clone PM23 prokMSA_id:108945 AB193980.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-captured fraction clone SSM263-aEB02 1.1.1.1.1.1.2585 OTU 20 seqs prokMSA_id:1050 AF119126.1 deep-sea sediment clone CRA7-11cm prokMSA_id:1056 AF119138.1 deep-sea sediment clone APA4-0cm prokMSA_id:1099 AB019723.1 hydrothermal vent clone pMC2A1 prokMSA_id:1100 AB019724.1 hydrothermal vent clone pMC1A11 prokMSA_id:1101 AB019725.1 hydrothermal vent clone pMC1A103 prokMSA_id:1129 U71112.1 marine clone C6 prokMSA_id:1130 U71113.1 marine clone C11 prokMSA_id:1131 U71114.1 marine clone C20 prokMSA_id:1133 U71116.1 Prof Marti cruise North Atlantic at depth 500m clone C35 prokMSA_id:1134 U71117.1 marine clone C46 prokMSA_id:1135 U71118.1 marine clone C48 prokMSA_id:28779 AJ347775.1 brine-seawater interface clone ST-12K13A archaeal prokMSA_id:28911 AJ347774.1 brine-seawater interface clone ST-3K4A archaeal prokMSA_id:33041 AF393305.1 crenarchaeote clone 19H08 prokMSA_id:38520 AF393304.1 crenarchaeote and glutamate semialdehyde aminotransferase cds clone 15G10 15G10 prokMSA_id:39914 AB050232.1 deep subsurface clone SAGMA-1 prokMSA_id:70288 AF419646.1 hydrothermal sediment clone AF419646 prokMSA_id:70553 AF393466.1 crenarchaeote genomic clone 74A4 prokMSA_id:73495 AF419636.1 hydrothermal sediment clone AF419636 prokMSA_id:75293 AJ535118.1 uranium mill tailings clone Gitt-GR-27 1.1.1.1.1.1.2586 OTU 1 seq prokMSA_id:1132 U71115.1 marine clone C33 1.1.1.1.1.1.2587 OTU 25 seqs prokMSA_id:1093 U78199.1 marine planktonic clone SB95-57 prokMSA_id:1102 AB019726.1 hydrothermal vent clone pIVWA108 prokMSA_id:1103 AB019727.1 hydrothermal vent clone pIVWA1 prokMSA_id:1105 AB019729.1 hydrothermal vent clone pIVWA11 prokMSA_id:1106 AB019730.1 hydrothermal vent clone pIVWA2 prokMSA_id:1107 AB019731.1 hydrothermal vent clone pIVWA3 prokMSA_id:1108 U68604.1 Amazon clone M17 prokMSA_id:34469 AJ347777.2 brine-seawater interface clone ST-12K2A archaeal prokMSA_id:63634 AF526983.1 East-Pacific Rise deep-sea hydrothermal vent clone pEPR853 prokMSA_id:100051 AY522863.1 mesophilic soil turf field West Madison Agricultural Research Station clone MWS22 prokMSA_id:100621 AB113625.1 subsurface geothermal water clone HAuD-MA13 prokMSA_id:100938 AY522881.1 mesophilic soil prairie Curtis Prairie UW Arboretum clone MCS34 prokMSA_id:100998 AY522869.1 mesophilic soil agricultural field Hancock Agricultural Research Station clone MHS12 prokMSA_id:104962 AY522872.1 mesophilic soil agricultural field Hancock Agricultural Research Station clone MHS1 prokMSA_id:108927 AB193963.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT793-aNB08 prokMSA_id:108929 AB193965.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM263-aNB02 prokMSA_id:108932 AB193968.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM263-aNB05 prokMSA_id:108934 AB193970.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM263-aNB07 prokMSA_id:108938 AB193973.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM264-aNB02 prokMSA_id:108940 AB193975.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM264-aNB04 prokMSA_id:108947 AB193982.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-captured fraction clone SSM263-aEB04 prokMSA_id:108948 AB193983.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-captured fraction clone SSM263-aEB05 prokMSA_id:108961 AB193996.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-captured fraction clone SSM264-aEB05 prokMSA_id:109255 AB193972.2 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM264-NA01 prokMSA_id:109256 AB193974.2 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM264-NA03 1.1.1.1.1.1.2588 OTU 1 seq prokMSA_id:46043 U40238.2 marine group I crenarchaeote 4B7 clone 1.1.1.1.1.1.2594 OTU 2 seqs prokMSA_id:1051 AF119127.1 deep-sea sediment clone CRA8-11cm prokMSA_id:1055 AF119136.1 deep-sea sediment clone APA3-0cm 1.1.1.1.1.1.2612 OTU 1 seq prokMSA_id:31165 AB050238.1 deep subsurface clone SAGMA-8 1.1.1.1.1.1.2621 OTU 8 seqs prokMSA_id:16793 AB050231.1 deep subsurface clone SAGMA-Z prokMSA_id:46479 AB050241.1 deep subsurface clone SAGMA-11 prokMSA_id:49412 AB050240.1 deep subsurface clone SAGMA-10 prokMSA_id:96490 AY186065.1 ferromanganese deposit clone EA1G9 prokMSA_id:97287 AY186062.1 ferromanganese deposit clone EA1F4 prokMSA_id:99896 AY522862.1 mesophilic soil turf field West Madison Agricultural Research Station clone MWS31 prokMSA_id:104677 AY522870.1 mesophilic soil agricultural field Hancock Agricultural Research Station clone MHS6 prokMSA_id:105735 AY522877.1 mesophilic soil turf field Walnut St. Research Fields UW Campus clone MGS1 1.1.1.1.1.1.2646 OTU 1 seq prokMSA_id:50748 AB050205.1 deep subsurface clone SAGMA-A 1.1.1.2 C1b 32 seqs 1.1.1.2.1 Unclassified 32 seqs 1.1.1.2.1.1 sf_1 31 seqs 1.1.1.2.1.1.2589 OTU 6 seqs prokMSA_id:1140 U62812.1 soil clone SCA1150 prokMSA_id:1146 U62818.1 soil clone SCA1173 prokMSA_id:25116 AB050233.1 deep subsurface clone SAGMA-2 prokMSA_id:47778 AB050228.1 deep subsurface clone SAGMA-W prokMSA_id:75056 AJ535120.1 uranium mill tailings clone Gitt-GR-39 prokMSA_id:76611 AJ535119.1 uranium mill tailings clone Gitt-GR-31 1.1.1.2.1.1.2591 OTU 10 seqs prokMSA_id:1111 U59968.1 freshwater sediment clone pGrfA4 prokMSA_id:1142 U62814.1 soil clone SCA1154 prokMSA_id:1143 U62815.1 soil clone SCA1158 prokMSA_id:1145 U62817.1 soil clone SCA1170 prokMSA_id:41594 AF227640.1 terrestrial plant root clone TRC23-10 prokMSA_id:45484 AF227635.1 terrestrial plant root clone TRC132-3 prokMSA_id:74966 AJ535117.1 uranium mill tailings clone Gitt-GR-5 prokMSA_id:75314 AJ535122.1 uranium mill tailings clone Gitt-GR-74 prokMSA_id:76642 AJ535121.1 uranium mill tailings clone Gitt-GR-47 prokMSA_id:83832 AY278106.1 group 1.1b clone 54D9 1.1.1.2.1.1.2625 OTU 15 seqs prokMSA_id:1139 U62811.1 soil clone SCA1145 prokMSA_id:1141 U62813.1 soil clone SCA1151 prokMSA_id:1144 U62816.1 soil clone SCA1166 prokMSA_id:1147 U62819.1 soil clone SCA1175 prokMSA_id:24479 AF227644.1 terrestrial plant root clone TRC23-38 prokMSA_id:26266 AF227637.1 terrestrial plant root clone TRC132-7 prokMSA_id:30247 AF227638.1 terrestrial plant root clone TRC132-8 prokMSA_id:32035 AB050221.1 deep subsurface clone SAGMA-P prokMSA_id:32329 AF227642.1 terrestrial plant root clone TRC23-30 prokMSA_id:39571 AF227643.1 terrestrial plant root clone TRC23-31 prokMSA_id:43271 AF227641.1 terrestrial plant root clone TRC23-28 prokMSA_id:46609 AF227639.1 terrestrial plant root clone TRC132-9 prokMSA_id:51909 AF227636.1 terrestrial plant root clone TRC132-6 prokMSA_id:71074 AJ496176.1 soil clone cren34kb prokMSA_id:76092 AJ535123.1 uranium mill tailings clone Gitt-GR-78 1.1.1.2.1.2 sf_3 1 seq 1.1.1.2.1.2.2645 OTU 1 seq prokMSA_id:1148 U62820.1 soil clone SCA11 1.1.1.3 C1d 3 seqs 1.1.1.3.1 Unclassified 3 seqs 1.1.1.3.1.1 sf_1 3 seqs 1.1.1.3.1.1.2577 OTU 2 seqs prokMSA_id:849 AB007307.1 hot water habitat clone pUWA2 prokMSA_id:53714 AF325186.1 hot spring clone A14 1.1.1.3.1.1.2635 OTU 1 seq prokMSA_id:43314 AF325181.1 hot spring clone A1 1.1.1.4 Unclassified 4 seqs 1.1.1.4.1 Unclassified 4 seqs 1.1.1.4.1.1 sf_1 4 seqs 1.1.1.4.1.1.2584 OTU 2 seqs prokMSA_id:39230 AF361211.1 hot spring clone SUBT-14 prokMSA_id:58501 AB072728.1 subsurface 1.1.1.4.1.1.2600 OTU 1 seq prokMSA_id:888 AB019732.1 hydrothermal vent clone pISA9 1.1.1.4.1.1.2631 OTU 1 seq prokMSA_id:17296 AF361212.1 hot spring clone SUBT-13 1.1.2 C2 13 seqs 1.1.2.1 C2 11 seqs 1.1.2.1.1 Unclassified 11 seqs 1.1.2.1.1.1 sf_1 11 seqs 1.1.2.1.1.1.2580 OTU 11 seqs prokMSA_id:829 U81774.2 anaerobic digestor clone vadinDC69 prokMSA_id:835 U59986.1 freshwater sediment clone pGrfC26 prokMSA_id:42699 AB055993.1 WSB-11 clone prokMSA_id:43667 AF424775.1 sludge clone 62-2 prokMSA_id:45742 AF424768.1 sludge clone 72-1 prokMSA_id:56717 AY082455.1 neutral pH mine biofilm clone 44a-A1-4 prokMSA_id:81841 AJ548933.1 oligotrophic fen clone FenO1- prokMSA_id:82394 AJ548934.1 oligotrophic fen clone FenO- prokMSA_id:83224 AY092146.1 clone AF87 prokMSA_id:83474 AY092147.1 clone AF9 prokMSA_id:107678 AJ576215.1 landfill leachate clone GZK15 1.1.2.2 OPA1 2 seqs 1.1.2.2.1 Unclassified 2 seqs 1.1.2.2.1.1 sf_1 2 seqs 1.1.2.2.1.1.2598 OTU 1 seq prokMSA_id:880 U63345.1 hot spring clone pSL123 1.1.2.2.1.1.2603 OTU 1 seq prokMSA_id:1171 L25305.1 hot spring clone pJP89 1.1.3 Thermoprotei 176 seqs 1.1.3.1 Cenarchaeales 6 seqs 1.1.3.1.1 Cenarchaeaceae 6 seqs 1.1.3.1.1.1 sf_1 6 seqs 1.1.3.1.1.1.2593 OTU 5 seqs prokMSA_id:19543 AF420236.1 Axinella damicornis symbiont prokMSA_id:31020 AF421159.1 Axinella sp. symbiont prokMSA_id:36985 AF420237.1 Axinella verrucosa symbiont prokMSA_id:69323 AF083071.1 Cenarchaeum symbiosum prokMSA_id:69639 AF083072.1 "Cenarchaeum symbiosum" 1.1.3.1.1.1.2616 OTU 1 seq prokMSA_id:1029 U51469.1 Cenarchaeum symbiosum 1.1.3.2 Desulfurococcales 30 seqs 1.1.3.2.1 Desulfurococcaceae 28 seqs 1.1.3.2.1.1 sf_1 11 seqs 1.1.3.2.1.1.2595 OTU 1 seq prokMSA_id:28917 AF268636.1 clone 73D 1.1.3.2.1.1.2607 OTU 8 seqs prokMSA_id:901 AJ131312.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL11 prokMSA_id:902 AJ131315.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL81 prokMSA_id:903 AJ131317.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL20 prokMSA_id:904 AJ131318.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL42 prokMSA_id:905 AJ131319.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL48 prokMSA_id:906 AJ131320.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL29 prokMSA_id:907 AJ131321.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL18 prokMSA_id:908 AJ131322.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL76 1.1.3.2.1.1.2613 OTU 1 seq prokMSA_id:900 AB015273.2 deepest cold-seep area Japan Trench clone JTB173 1.1.3.2.1.1.2633 OTU 1 seq prokMSA_id:899 AF005758.1 clone Arc.43 1.1.3.2.1.2 sf_2 17 seqs 1.1.3.2.1.2.2560 OTU 7 seqs prokMSA_id:916 X99560.1 Staphylothermus marinus prokMSA_id:920 AJ012645.2 Staphylothermus achaiicus prokMSA_id:56004 AJ299156.1 prokMSA_id:59040 AJ299158.1 prokMSA_id:59042 AJ299157.1 prokMSA_id:59090 AJ299150.1 prokMSA_id:59091 AJ299149.1 1.1.3.2.1.2.2576 OTU 2 seqs prokMSA_id:921 X99562.1 "Ignicoccus islandicus" prokMSA_id:16514 AJ271794.1 Ignicoccus pacificus 1.1.3.2.1.2.2590 OTU 1 seq prokMSA_id:894 D83259.1 Aeropyrum pernix 1.1.3.2.1.2.2605 OTU 5 seqs prokMSA_id:930 M36474.1 Desulfurococcus mobilis prokMSA_id:932 X99561.1 Desulfurococcus sp. str.OC11 prokMSA_id:936 X98064.1 Sulfophobococcus zilligii prokMSA_id:22921 AF255606.1 Desulfurococcaceae str. SRI-465 prokMSA_id:23984 AF411230.1 Desulfurococcus sp. str. SEA 1.1.3.2.1.2.2611 OTU 1 seq prokMSA_id:66762 AJ318042.1 Ignicoccus sp. str. Kin4-I 1.1.3.2.1.2.2641 OTU 1 seq prokMSA_id:72647 AF361213.1 hot spring clone SUBT-9 1.1.3.2.2 Pyrodictiaceae 2 seqs 1.1.3.2.2.1 sf_1 2 seqs 1.1.3.2.2.1.2578 OTU 2 seqs prokMSA_id:879 M21087.1 Pyrodictium occultum prokMSA_id:63641 AF526974.1 East-Pacific Rise deep-sea hydrothermal vent clone pEPR263 1.1.3.3 Sulfolobales 52 seqs 1.1.3.3.1 Sulfolobaceae 52 seqs 1.1.3.3.1.1 sf_1 51 seqs 1.1.3.3.1.1.2561 OTU 21 seqs prokMSA_id:938 X90483.1 Sulfolobus solfataricus prokMSA_id:940 M32504.1 Sulfolobus shibatae prokMSA_id:941 X90478.1 Sulfolobus solfataricus prokMSA_id:942 D26490.1 Sulfolobus solfataricus prokMSA_id:54467 NC_002754.1 Sulfolobus solfataricus P2 prokMSA_id:69935 AF425660.1 Sulfolobus sp. str. NGB23/00 prokMSA_id:70345 AF425656.1 Sulfolobus sp. str. FF5/00 prokMSA_id:71652 AF425659.1 Sulfolobus sp. str. NL8/00 prokMSA_id:71769 AF425657.1 Sulfolobus sp. str. MV2/99 prokMSA_id:73229 AF425653.1 Sulfolobus sp. str. RC6/00 prokMSA_id:74206 AF425654.1 Sulfolobus sp. str. NGB6/00 prokMSA_id:74215 AF425652.1 Sulfolobus sp. str. AMP12/99 prokMSA_id:92332 AY247901.1 Sulfolobus islandicus str. C51 prokMSA_id:92401 AY247897.1 Sulfolobus islandicus str. B6A prokMSA_id:92457 AY247895.1 Sulfolobus islandicus str. M14A prokMSA_id:92579 AY247900.1 Sulfolobus islandicus str. N15B prokMSA_id:92813 AY247893.1 Sulfolobus islandicus str. I2 prokMSA_id:92884 AY247894.1 Sulfolobus islandicus str. I7 prokMSA_id:93061 AY247899.1 Sulfolobus islandicus str. N15A prokMSA_id:113323 AY907889.1 Sulfolobus sp. str. JP2 prokMSA_id:114036 AY907890.1 Sulfolobus sp. str. JP3 1.1.3.3.1.1.2567 OTU 6 seqs prokMSA_id:977 U38361.1 Metallosphaera sedula prokMSA_id:978 D26491.1 Metallosphaera sedula prokMSA_id:979 X90481.1 Metallosphaera sedula prokMSA_id:980 X90482.1 Metallosphaera prunae prokMSA_id:981 AF167083.1 Metallosphaera sp. J1 prokMSA_id:41957 D85508.1 Metallosphaera sp.TA2 1.1.3.3.1.1.2570 OTU 6 seqs prokMSA_id:950 X90485.1 "Sulfolobus thuringiensis" prokMSA_id:951 D14876.1 Sulfolobus acidocaldarius prokMSA_id:952 U05018.2 Sulfolobus acidocaldarius prokMSA_id:953 X03235.1 Sulfolobus solfataricus prokMSA_id:18034 AF425662.1 Sulfolobus sp. str. MVSoil6/SC1 prokMSA_id:71832 AF425661.1 Sulfolobus sp. str. MVSoil3/SC2 1.1.3.3.1.1.2572 OTU 3 seqs prokMSA_id:945 U40813.1 Sulfolobus sp. LM prokMSA_id:946 X90479.1 Sulfolobus metallicus prokMSA_id:947 D85519.1 Sulfolobus metallicus 1.1.3.3.1.1.2604 OTU 1 seq prokMSA_id:963 AF169011.1 hot spring clone MS1 1.1.3.3.1.1.2610 OTU 3 seqs prokMSA_id:954 U38360.1 Sulfolobus sp. B6/2 prokMSA_id:955 D85520.1 Stygiolobus azoricus prokMSA_id:956 X90480.1 Stygiolobus azoricus 1.1.3.3.1.1.2614 OTU 4 seqs prokMSA_id:958 D85507.1 Sulfurisphaera ohwakuensis prokMSA_id:964 AB010957.1 "Sulfolobus yangmingensis" prokMSA_id:46167 NC_003106.2 Sulfolobus tokodaii str. 7 prokMSA_id:54912 AB022438.1 Sulfolobus tokodaii str. strain 7 1.1.3.3.1.1.2615 OTU 3 seqs prokMSA_id:29928 AF391995.1 thermal soil clone YNPFFA30 prokMSA_id:30893 AF391996.1 thermal soil clone YNPFFA52 prokMSA_id:35548 AF391994.1 thermal soil clone YNPFFA2 1.1.3.3.1.1.2647 OTU 4 seqs prokMSA_id:973 U38359.1 Acidianus brierleyi prokMSA_id:974 X90477.1 Acidianus brierleyi prokMSA_id:975 D26489.1 Acidianus brierleyi prokMSA_id:19329 AF226987.1 Acidianus tengchongenses 1.1.3.3.1.2 sf_2 1 seq 1.1.3.3.1.2.2599 OTU 1 seq prokMSA_id:959 X96692.1 humus layer Finnish forest soil clone FFSB5 1.1.3.4 Thermoproteales 35 seqs 1.1.3.4.1 Thermofilaceae 3 seqs 1.1.3.4.1.1 sf_1 3 seqs 1.1.3.4.1.1.2566 OTU 3 seqs prokMSA_id:826 X14835.1 Thermofilum pendens str. Hvv3 DSM 2475 prokMSA_id:49927 AF255605.1 hot spring clone SRI-370 prokMSA_id:70948 AF176345.1 hot spring clone pBA1 1.1.3.4.2 Thermoproteaceae 31 seqs 1.1.3.4.2.1 sf_1 31 seqs 1.1.3.4.2.1.2596 OTU 1 seq prokMSA_id:872 M35966.1 Thermoproteus tenax 1.1.3.4.2.1.2597 OTU 1 seq prokMSA_id:877 AB005296.1 Thermocladium modestius 1.1.3.4.2.1.2608 OTU 17 seqs prokMSA_id:16312 AB063636.1 Vulcanisaeta str. IC-052 prokMSA_id:18315 AB063630.1 Vulcanisaeta str. IC-017 prokMSA_id:19003 AB063639.1 Vulcanisaeta str. IC-065 prokMSA_id:23083 AB063646.1 Vulcanisaeta souniana str. IC-060 prokMSA_id:23289 AB063645.1 Vulcanisaeta souniana str. IC-059 prokMSA_id:23618 AB063641.1 Vulcanisaeta str. IC-135 prokMSA_id:27751 AB063632.1 Vulcanisaeta str. IC-029 prokMSA_id:30926 AB063634.1 Vulcanisaeta str. IC-032 prokMSA_id:38823 AB063635.1 Vulcanisaeta str. IC-051 prokMSA_id:40703 AB063640.1 Vulcanisaeta str. IC-124 prokMSA_id:41394 AB063631.1 Vulcanisaeta str. IC-019 prokMSA_id:42441 AB063637.1 Vulcanisaeta str. IC-058 prokMSA_id:45499 AB063633.1 Vulcanisaeta str. IC-030 prokMSA_id:47601 AB063643.1 Vulcanisaeta str. IC-140 prokMSA_id:71811 AB063644.1 Vulcanisaeta str. IC-141 prokMSA_id:72845 AB063638.1 Vulcanisaeta str. IC-064 prokMSA_id:73455 AB063642.1 Vulcanisaeta str. IC-136 1.1.3.4.2.1.2609 OTU 11 seqs prokMSA_id:868 L07511.1 Pyrobaculum islandicum prokMSA_id:869 L07510.1 Pyrobaculum aerophilum IM2 str. im2 prokMSA_id:870 X81886.1 Pyrobaculum neutrophilum prokMSA_id:873 AB009618.1 Thermoproteus neutrophilus str. JCM9278 prokMSA_id:20435 AJ277124.1 Pyrobaculum arsenaticum str. PZ6 prokMSA_id:26139 AF176346.1 hot spring clone pBA2 prokMSA_id:34186 AB063647.1 Pyrobaculum organotrophum str. JCM 9190 prokMSA_id:44220 AB029339.1 Pyrobaculum oguniense prokMSA_id:52477 AJ277125.1 Pyrobaculum sp. str. WIJ3 prokMSA_id:63979 AB087402.1 Pyrobaculum oguniense str. TE7 prokMSA_id:78804 AB078332.1 Pyrobaculum calidifontis str. VA1 1.1.3.4.2.1.2650 OTU 1 seq prokMSA_id:16428 AB013926.1 Caldivirga maquilingensis str. IC-167 1.1.3.4.3 Unclassified 1 seq 1.1.3.4.3.1 sf_1 1 seq 1.1.3.4.3.1.2652 OTU 1 seq prokMSA_id:73046 AF419633.1 hydrothermal sediment clone AF419633 1.1.3.5 Unclassified 53 seqs 1.1.3.5.1 Unclassified 53 seqs 1.1.3.5.1.1 sf_11 2 seqs 1.1.3.5.1.1.2564 OTU 2 seqs prokMSA_id:23461 AB052979.1 pPACMA-I clone prokMSA_id:23664 AB052991.1 pPACMA-X clone 1.1.3.5.1.2 sf_12 1 seq 1.1.3.5.1.2.2624 OTU 1 seq prokMSA_id:919 U63340.1 hot spring clone pSL22 1.1.3.5.1.3 sf_13 35 seqs 1.1.3.5.1.3.2565 OTU 2 seqs prokMSA_id:934 AF005754.1 clone Arc.3 prokMSA_id:935 AF005759.1 clone Arc.75 1.1.3.5.1.3.2571 OTU 3 seqs prokMSA_id:922 AF005755.1 clone Arc.4 prokMSA_id:27534 AF005767.1 clone Arc.212 prokMSA_id:35833 AF005763.2 clone Arc.148 1.1.3.5.1.3.2573 OTU 2 seqs prokMSA_id:852 AF005753.1 clone Arc.2 prokMSA_id:47871 AF005764.1 clone Arc.168 1.1.3.5.1.3.2574 OTU 3 seqs prokMSA_id:1017 X96693.1 humus layer Finnish forest soil clone FFSB6 prokMSA_id:19586 Y08985.1 was humus layer Finnish forest soil clone FFSA2 prokMSA_id:41469 Y08984.1 was humus layer Finnish forest soil clone FFSA1 1.1.3.5.1.3.2579 OTU 2 seqs prokMSA_id:1007 AF119135.1 deep-sea sediments NW Atlantic Ocean Abyssal Plain depth 4500 m clone prokMSA_id:1008 AF119143.1 deep-sea sediments Atlantis Canyon depth 1500 m clone 1.1.3.5.1.3.2581 OTU 4 seqs prokMSA_id:832 AF005752.1 clone Arc.1 prokMSA_id:834 AF005762.2 clone Arc.119 prokMSA_id:30652 AF005761.1 clone Arc.118 prokMSA_id:42364 AF005760.1 clone Arc.98 1.1.3.5.1.3.2606 OTU 12 seqs prokMSA_id:1011 X96688.1 humus layer Finnish forest soil clone FFSB1 prokMSA_id:1014 X96689.1 humus layer Finnish forest soil clone FFSB2 prokMSA_id:19206 AY016504.1 Alpine tundra soil isolate clone prokMSA_id:19287 AJ419926.1 boreal forest humus layer clone PSSBEM10-6 prokMSA_id:30300 AY016490.1 Subalpine forest soil isolate clone prokMSA_id:32046 AY016493.1 Subalpine forest soil isolate clone prokMSA_id:35162 AJ419921.1 boreal forest humus layer clone PSPIHH28-2 prokMSA_id:76043 AJ535136.1 uranium mill tailings clone JG36-GR-140 prokMSA_id:84196 AY278095.1 freshwater lake clone GRU11 prokMSA_id:84510 AY278081.1 freshwater lake clone GRU10 prokMSA_id:84669 AY278086.1 freshwater lake clone GRU19 prokMSA_id:85692 AY278100.1 forest soil clone S248-7 1.1.3.5.1.3.2627 OTU 1 seq prokMSA_id:847 AF118662.1 anoxic sediment clone pBRKC88 1.1.3.5.1.3.2628 OTU 1 seq prokMSA_id:848 AF119129.1 deep-sea sediments NW Atlantic Ocean Continental Rise depth 2600 m clone 1.1.3.5.1.3.2638 OTU 1 seq prokMSA_id:22234 AY016471.1 Ponderosa pine forest soil isolate clone 1.1.3.5.1.3.2639 OTU 1 seq prokMSA_id:931 AF005756.1 clone Arc.9 1.1.3.5.1.3.2644 OTU 1 seq prokMSA_id:38903 AF005766.1 clone Arc.201 1.1.3.5.1.3.2653 OTU 1 seq prokMSA_id:44205 AF328199.1 clone KS60 1.1.3.5.1.3.2655 OTU 1 seq prokMSA_id:833 AF005757.1 clone Arc.22 1.1.3.5.1.4 sf_2 1 seq 1.1.3.5.1.4.2649 OTU 1 seq prokMSA_id:828 AF118656.1 anoxic sediment clone pBRKC86 1.1.3.5.1.5 sf_3 1 seq 1.1.3.5.1.5.2618 OTU 1 seq prokMSA_id:839 U63342.1 hot spring clone pSL50 1.1.3.5.1.6 sf_4 5 seqs 1.1.3.5.1.6.2575 OTU 3 seqs prokMSA_id:831 AF004345.1 Buzzards Bay sediments NW Atlantic Ocean depth 12 m clone BBA6 prokMSA_id:23119 AF424519.1 crenarchaeote clone MERTZ_2CM_269 prokMSA_id:31024 AF424527.1 crenarchaeote clone MERTZ_21CM_232 1.1.3.5.1.6.2623 OTU 1 seq prokMSA_id:918 AF004343.1 Buzzards Bay sediments NW Atlantic Ocean depth 12 m clone BBA2 1.1.3.5.1.6.2634 OTU 1 seq prokMSA_id:854 U59984.1 Lake Griffy sediment Bloomington clone pGrfB286 1.1.3.5.1.7 sf_5 1 seq 1.1.3.5.1.7.2637 OTU 1 seq prokMSA_id:72965 AF419648.1 2.5 -5 cm layer core T clone 1.1.3.5.1.8 sf_6 1 seq 1.1.3.5.1.8.2620 OTU 1 seq prokMSA_id:1009 AF142788.1 clone ACE-6 1.1.3.5.1.9 sf_7 6 seqs 1.1.3.5.1.9.2563 OTU 1 seq prokMSA_id:50209 AB049030.1 pPCA4.4 clone 1.1.3.5.1.9.2582 OTU 1 seq prokMSA_id:1127 U71110.1 Prof Marti cruise North Atlantic at depth 500m clone PM8 1.1.3.5.1.9.2601 OTU 1 seq prokMSA_id:1052 AF119130.1 deep-sea sediments NW Atlantic Ocean Continental Rise depth 2600 m clone 1.1.3.5.1.9.2602 OTU 1 seq prokMSA_id:70916 AF201357.1 1.1.3.5.1.9.2640 OTU 1 seq prokMSA_id:989 Z11573.1 clone NH49-9 1.1.3.5.1.9.2643 OTU 1 seq prokMSA_id:20712 AF355855.1 clone 33-P38A00 1.2 Euryarchaeota 984 seqs 1.2.1 Archaeoglobi 20 seqs 1.2.1.1 Archaeoglobales 19 seqs 1.2.1.1.1 Archaeoglobaceae 19 seqs 1.2.1.1.1.1 sf_1 19 seqs 1.2.1.1.1.1.2138 OTU 12 seqs prokMSA_id:740 Y10011.2 Archaeoglobus veneficus prokMSA_id:743 X05567.1 Archaeoglobus fulgidus prokMSA_id:750 AF068814.2 hydrothermal vent clone VC2.1 Arc2 prokMSA_id:751 AF068815.2 hydrothermal vent clone VC2.1 Arc4 prokMSA_id:755 Y00275.1 Archaeoglobus fulgidus prokMSA_id:50705 NC_000917.1 Archaeoglobus fulgidus DSM 4304 prokMSA_id:71588 AJ299218.1 Archaeoglobus lithotrophicus str. TF2 prokMSA_id:71722 AF418181.1 Archaeoglobus veneficus str. DSM 11195 prokMSA_id:73240 AF220165.1 hyperthermophile isolate str. 234 prokMSA_id:74691 AE000965.1 Archaeoglobus fulgidus prokMSA_id:104760 AB111029.1 hydrothermal fluid clone AB111029 prokMSA_id:104936 AB111488.1 hydrothermal fluid clone AB111488 1.2.1.1.1.1.2152 OTU 7 seqs prokMSA_id:752 AF068819.2 hydrothermal vent clone VC2.1 Arc8 prokMSA_id:753 AF068824.2 hydrothermal vent clone VC2.1 Arc36 prokMSA_id:754 AB019735.1 hydrothermal vent clone pMC2A228 prokMSA_id:33400 AF297529.1 Archaeoglobus profundus prokMSA_id:47919 AF322392.1 Archaeoglobus profundus prokMSA_id:71597 AJ299219.1 Archaeoglobus profundus str. AV18 prokMSA_id:71750 AF419628.1 hydrothermal sediment clone AF419628 1.2.1.2 Unclassified 1 seq 1.2.1.2.1 Unclassified 1 seq 1.2.1.2.1.1 sf_1 1 seq 1.2.1.2.1.1.2083 OTU 1 seq prokMSA_id:25153 AY053468.1 physically with gas hydrate clone AT425_ArB9 1.2.10 pMC2 4 seqs 1.2.10.1 Unclassified 4 seqs 1.2.10.1.1 Unclassified 4 seqs 1.2.10.1.1.1 sf_1 1 seq 1.2.10.1.1.1.2231 OTU 1 seq prokMSA_id:21 AB019743.1 hydrothermal vent clone pMC2A5 1.2.10.1.1.2 sf_2 3 seqs 1.2.10.1.1.2.2304 OTU 3 seqs prokMSA_id:51 AJ133623.1 hypersaline brine sediment clone KTK18A prokMSA_id:33564 AJ347789.1 brine-seawater interface Shaban Deep Red Sea clone ST-12K22A prokMSA_id:39923 AF199377.1 anoxic hypolimnion at 4.75m isolate str. J4.75-24 1.2.11 SAGMEG-1 5 seqs 1.2.11.1 Unclassified 5 seqs 1.2.11.1.1 Unclassified 5 seqs 1.2.11.1.1.1 sf_1 5 seqs 1.2.11.1.1.1.2098 OTU 1 seq prokMSA_id:16893 AB050214.1 deep subsurface clone SAGMA-J 1.2.11.1.1.1.2195 OTU 1 seq prokMSA_id:24840 AB050211.1 deep subsurface clone SAGMA-G 1.2.11.1.1.1.2216 OTU 1 seq prokMSA_id:73906 AB050210.1 deep subsurface clone SAGMA-F 1.2.11.1.1.1.2277 OTU 1 seq prokMSA_id:26100 AB050209.1 deep subsurface clone SAGMA-E 1.2.11.1.1.1.2630 OTU 1 seq prokMSA_id:68897 AB050212.1 deep subsurface clone SAGMA-H 1.2.12 Sediment Archaea-1 1 seq 1.2.12.1 group 1 1 seq 1.2.12.1.1 Unclassified 1 seq 1.2.12.1.1.1 sf_1 1 seq 1.2.12.1.1.1.2282 OTU 1 seq prokMSA_id:4 AB019749.1 hydrothermal vent clone pISA18 1.2.13 Spirotrichea 1 seq 1.2.13.1 Armophorida 1 seq 1.2.13.1.1 Metopidae 1 seq 1.2.13.1.1.1 sf_1 1 seq 1.2.13.1.1.1.2088 OTU 1 seq prokMSA_id:24205 AJ132639.1 Nyctotherus ovalis symbiont 1.2.14 Thermococci 92 seqs 1.2.14.1 Thermococcales 90 seqs 1.2.14.1.1 Thermococcaceae 90 seqs 1.2.14.1.1.1 sf_1 89 seqs 1.2.14.1.1.1.2076 OTU 1 seq prokMSA_id:763 D45214.1 Pyrococcus horikoshii 1.2.14.1.1.1.2182 OTU 33 seqs prokMSA_id:758 Z54172.1 Pyrococcus sp.GE23 prokMSA_id:759 Z70246.1 "Pyrococcus abyssi" prokMSA_id:760 AJ225071.1 "Pyrococcus abyssi" prokMSA_id:761 L19921.1 Pyrococcus abyssi prokMSA_id:762 AP000001.1 Pyrococcus horikoshii str. OT3 prokMSA_id:765 D87344.1 Pyrococcus horikoshii prokMSA_id:766 U20163.1 Pyrococcus furiosus prokMSA_id:768 X99570.1 Thermococcus chitonophagus prokMSA_id:769 Z70247.1 Pyrococcus sp.AL585 prokMSA_id:49491 AB050246.1 clone SAGMA-16 prokMSA_id:84011 AB095114.1 Central Indian Ridge (CIR) deep-sea hydrothermal vent site clone pCIRA-C prokMSA_id:84479 AB095146.1 Pyrococcus sp. str. Tc-2-70 prokMSA_id:86433 AB095143.1 Thermococcus sp. str. Tc-1-70 prokMSA_id:99378 AJ419868.1 Pyrococcus sp. str. MV1019 prokMSA_id:100032 AJ585956.1 enrichment hydrothermal black smoker clone T17a-60 prokMSA_id:100193 AJ585957.1 enrichment hydrothermal black smoker clone T17a-44 prokMSA_id:100501 AJ585959.1 enrichment hydrothermal black smoker clone T30a-17 prokMSA_id:100556 AY559125.1 Pyrococcus sp. str. Ax99-7 prokMSA_id:100822 AY099164.1 Pyrococcus sp. str. 32-4 prokMSA_id:101149 AY099166.1 Pyrococcus abyssi str. GE23 prokMSA_id:101303 AY099167.1 Pyrococcus abyssi str. GE5 prokMSA_id:101482 AY099168.1 Pyrococcus glycovorans str. AL585 prokMSA_id:101648 AY099169.1 Pyrococcus horikoshii str. DSM 12428 prokMSA_id:106028 AY099175.1 Thermococcus chitonophagus str. DSM 10152 prokMSA_id:107337 AY519654.1 Pyrococcus woesei prokMSA_id:108031 NC_003413.1 Pyrococcus furiosus prokMSA_id:108924 AB193962.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT793-aNB07 prokMSA_id:111537 AE010139.1 Pyrococcus furiosus str. DSM 3638 prokMSA_id:111702 AY017182.1 Pyrococcus sp. str. MZ14 prokMSA_id:111779 AY017173.1 Pyrococcus sp. str. MZ4 prokMSA_id:111955 AF411292.1 Pyrococcus sp. str. JT1 prokMSA_id:112119 AJ248283.1 Pyrococcus abyssi prokMSA_id:112417 NC_000868.1 Pyrococcus abyssi str. GE5 1.2.14.1.1.1.2199 OTU 1 seq prokMSA_id:757 Y08384.1 Thermococcus aggregans str. DSM 10597 1.2.14.1.1.1.2224 OTU 2 seqs prokMSA_id:58788 AY134472.1 Palaeococcus helgesonii str. PI1 prokMSA_id:100398 AY559124.1 Palaeococcus sp. str. Ax00-33 1.2.14.1.1.1.2237 OTU 22 seqs prokMSA_id:777 Z70244.1 Thermococcus hydrothermalis prokMSA_id:784 M21529.1 Thermococcus celer prokMSA_id:789 U76535.1 "Thermococcus barossii" prokMSA_id:791 AJ012644.3 "Aphrodite sulfophila" prokMSA_id:800 AF068816.2 hydrothermal vent clone VC2.1 Arc5 prokMSA_id:802 AF068821.2 hydrothermal vent clone VC2.1 Arc16 prokMSA_id:803 AF068823.2 hydrothermal vent clone VC2.1 Arc35 prokMSA_id:814 Z75240.1 Thermococcus stetteri prokMSA_id:30578 AB055120.1 Thermococcus acidaminovorans str. DSM 11906 prokMSA_id:30964 AB055123.1 Thermococcus gorgonarius str. JCM 10552 prokMSA_id:31437 AJ291809.1 Thermococcus gorgonarius str. DSM 10395 Type prokMSA_id:34911 AB017920.1 Desulfurococcus sp. str. SY prokMSA_id:38459 AJ291807.1 Thermococcus acidaminovorans str. DSM 11906 prokMSA_id:43730 AF479014.2 Thermococcus tolerans str. EJ3 prokMSA_id:54119 AY017171.1 Thermococcus sp. str. MZ2 prokMSA_id:54189 AY017170.1 Thermococcus sp. str. MZ1 prokMSA_id:54583 AY017180.1 Thermococcus sp. str. MZ12 prokMSA_id:54651 AY017174.1 Thermococcus sp. str. MZ5 prokMSA_id:54665 AY017181.1 Thermococcus sp. str. MZ13 prokMSA_id:55014 AY017175.1 Thermococcus sp. str. MZ6 prokMSA_id:68329 AF356631.1 Guaymas Basin clone G26_C48 prokMSA_id:112080 AY017176.1 Thermococcus sp. str. MZ8 1.2.14.1.1.1.2240 OTU 6 seqs prokMSA_id:790 U76534.1 Thermococcus zilligii prokMSA_id:807 AB019239.1 "Palaeococcus ferriphilus" prokMSA_id:810 AF098975.1 "Thermococcus waimanguensis" prokMSA_id:811 AF017455.1 Thermococcus sp. Rt3 prokMSA_id:812 AF134982.1 "Thermococcus waiotapuense" prokMSA_id:19786 AB055127.1 Thermococcus waiotapuensis str. JCM 10985 1.2.14.1.1.1.2242 OTU 5 seqs prokMSA_id:786 Z75218.1 "Thermococcus mexicalis" prokMSA_id:787 AB016298.1 Thermococcus sp.B1001 prokMSA_id:792 AJ012643.2 "Thermococcus aegeaicus" prokMSA_id:46577 AJ238992.1 Thermococcus sibiricus str. MM739 prokMSA_id:48696 AB055121.1 Thermococcus alcaliphilus str. DSM 10322 1.2.14.1.1.1.2264 OTU 19 seqs prokMSA_id:770 U82237.1 Thermococcus barophilus prokMSA_id:799 AF068813.2 hydrothermal vent clone VC2.1 Arc1 prokMSA_id:809 Z75233.1 Thermococcus profundus prokMSA_id:818 D38650.2 Thermococcus kodakaraensis KODI prokMSA_id:819 Y08385.1 Thermococcus guaymasensis str. DSM 11113 prokMSA_id:18391 AF479013.1 Thermococcus radiotolerans str. EJ2 prokMSA_id:21914 AB055124.1 Thermococcus pacificus str. JCM 10553 prokMSA_id:32059 AJ298871.1 Thermococcus peptonophilus str. DSM 10343 prokMSA_id:32192 AJ291810.1 Thermococcus peptonophilus str. DSM 10343 Type prokMSA_id:33045 AB055126.1 Thermococcus siculi str. DSM 12349 prokMSA_id:34206 AJ291811.1 Thermococcus pacificus str. DSM 10394 Type prokMSA_id:48271 AJ298870.1 Thermococcus siculi str. DSM 12349 prokMSA_id:48581 AJ291808.1 Thermococcus siculi str. DSM 12349 Type prokMSA_id:58650 AJ419869.1 Thermococcus sp. str. MV1099 prokMSA_id:69804 AF419641.1 hydrothermal sediment clone AF419641 prokMSA_id:73209 AF479012.1 Thermococcus marinus str. EJ1 prokMSA_id:99167 AJ583507.1 Thermococcus sp. str. AM4 prokMSA_id:103714 AJ419873.1 Thermococcus sp. str. MV1031 prokMSA_id:111565 U47109.1 Thermococcus sp. str. 9oN-7 1.2.14.1.1.2 sf_2 1 seq 1.2.14.1.1.2.2238 OTU 1 seq prokMSA_id:34194 AB050213.1 deep subsurface clone SAGMA-I 1.2.14.2 Unclassified 2 seqs 1.2.14.2.1 Unclassified 2 seqs 1.2.14.2.1.1 sf_1 1 seq 1.2.14.2.1.1.2075 OTU 1 seq prokMSA_id:46965 AF355813.1 clone 33-P44A00 1.2.14.2.1.2 sf_2 1 seq 1.2.14.2.1.2.2220 OTU 1 seq prokMSA_id:774 AB019747.1 hydrothermal vent clone pMC2A17 1.2.15 Thermoplasmata 86 seqs 1.2.15.1 E2 32 seqs 1.2.15.1.1 aquatic group (III) 9 seqs 1.2.15.1.1.1 sf_1 9 seqs 1.2.15.1.1.1.2080 OTU 4 seqs prokMSA_id:58 AF134390.1 anaerobic methane rich marine sediments clone TA1f2 prokMSA_id:37573 AF142981.1 clone BURTON2_A prokMSA_id:45897 AF142982.1 clone BURTON20_A prokMSA_id:101667 AY592524.1 deep-sea mud volcano clone BC07-3A-13 1.2.15.1.1.1.2113 OTU 1 seq prokMSA_id:73685 AF419643.1 hydrothermal sediment clone AF419643 1.2.15.1.1.1.2134 OTU 1 seq prokMSA_id:428 AB019737.1 hydrothermal vent clone pMC2A203 1.2.15.1.1.1.2139 OTU 1 seq prokMSA_id:429 AB019738.1 hydrothermal vent clone pMC2A33 1.2.15.1.1.1.2280 OTU 1 seq prokMSA_id:54 AB019736.1 hydrothermal vent clone pMC2A24 1.2.15.1.1.1.2294 OTU 1 seq prokMSA_id:526 AF119123.1 deep-sea sediment clone CRA12-27cm 1.2.15.1.2 terrestrial group 23 seqs 1.2.15.1.2.1 sf_1 22 seqs 1.2.15.1.2.1.2118 OTU 9 seqs prokMSA_id:20250 AF268663.1 clone 112D prokMSA_id:24419 AF268660.1 clone 113C prokMSA_id:29379 AF268637.1 clone 73A prokMSA_id:31891 AF268638.1 clone 66D prokMSA_id:34934 AF268657.1 clone 101B prokMSA_id:38604 AF268634.1 clone 71A prokMSA_id:41358 AF157521.1 swine waste pit clone prokMSA_id:54629 AF268639.1 clone 60B prokMSA_id:99897 AJ576235.1 landfill leachate clone GZK61 1.2.15.1.2.1.2192 OTU 2 seqs prokMSA_id:34273 AB034186.1 rumen clone M2 prokMSA_id:52339 AB034184.1 rumen clone M7 1.2.15.1.2.1.2249 OTU 1 seq prokMSA_id:724 U81778.2 anaerobic digestor clone vadinCA11 1.2.15.1.2.1.2253 OTU 8 seqs prokMSA_id:16713 AF293504.1 termite gut homogenate proctodeal segment P4b clone P4b-Ar-7 prokMSA_id:30521 AF293482.1 termite gut homogenate proctodeal segment P4b clone P4b-Ar-10 prokMSA_id:45098 AF293491.1 termite gut homogenate proctodeal segment P4b clone P4b-Ar-19 prokMSA_id:74993 AB062308.1 isolate xylophagous cockroach clone PA201 prokMSA_id:76146 AB062311.1 isolate xylophagous cockroach clone PA204 prokMSA_id:76154 AB062320.1 isolate xylophagous cockroach clone PA203 prokMSA_id:76707 AB062309.1 isolate xylophagous cockroach clone PA202 prokMSA_id:102838 AY351437.1 rumen fluid sheep grazing on forage clone CSIRO1.04 1.2.15.1.2.1.2270 OTU 2 seqs prokMSA_id:723 U81773.2 anaerobic digestor clone vadinDC79 prokMSA_id:44971 AB034187.1 rumen clone M1 1.2.15.1.2.2 sf_2 1 seq 1.2.15.1.2.2.2204 OTU 1 seq prokMSA_id:63282 AF523939.1 coal effluent wetland clone ARCP130 1.2.15.2 E3 2 seqs 1.2.15.2.1 marine group II 2 seqs 1.2.15.2.1.1 sf_1 2 seqs 1.2.15.2.1.1.2190 OTU 2 seqs prokMSA_id:48775 AF223149.1 Anvers Island coast (Antarctica) at 20m clone AM-20A_123 prokMSA_id:112246 AF257277.1 marine clone DH148-W1 1.2.15.3 Thermoplasmatales 38 seqs 1.2.15.3.1 Cplasma 1 seq 1.2.15.3.1.1 sf_1 1 seq 1.2.15.3.1.1.2198 OTU 1 seq prokMSA_id:58156 AF544219.1 acid mine drainage clone AS1 1.2.15.3.2 Eplasma 2 seqs 1.2.15.3.2.1 sf_1 2 seqs 1.2.15.3.2.1.2186 OTU 2 seqs prokMSA_id:16489 AF225458.1 clone SC38 prokMSA_id:71237 AF523941.1 coal effluent wetland clone ARCP160 1.2.15.3.3 Ferroplasmaceae 6 seqs 1.2.15.3.3.1 sf_1 6 seqs 1.2.15.3.3.1.2227 OTU 6 seqs prokMSA_id:720 AJ224936.1 Ferroplasma acidophilum prokMSA_id:29649 AF232925.1 hot spring clone MS14 prokMSA_id:65352 AF513710.1 Ferroplasma sp. MT17 prokMSA_id:85217 AY222042.1 Ferroplasma sp. DR1 prokMSA_id:111333 AY830840.1 Ferroplasma sp. str. JTC3 prokMSA_id:113856 AY907888.1 Ferroplasma cyprexacervatum str. BH2 1.2.15.3.4 Picrophilaceae 1 seq 1.2.15.3.4.1 sf_1 1 seq 1.2.15.3.4.1.2166 OTU 1 seq prokMSA_id:710 X84901.1 Picrophilus oshimae 1.2.15.3.5 Thermoplasmataceae 8 seqs 1.2.15.3.5.1 sf_1 7 seqs 1.2.15.3.5.1.2178 OTU 7 seqs prokMSA_id:721 M38637.1 Thermoplasma acidophilum prokMSA_id:27173 AF339746.1 Thermoplasma volcanium str. GSS1; DSM 4299 prokMSA_id:46145 NC_002689.2 Thermoplasma volcanium GSS1 prokMSA_id:47351 AJ299215.1 Thermoplasma volcanium prokMSA_id:47977 NC_002578.1 Thermoplasma acidophilum str. DSM 1728 prokMSA_id:68998 AP000996.2 Thermoplasma volcanium str. GSS1 prokMSA_id:112073 BA000011.4 Thermoplasma volcanium str. GSS1 1.2.15.3.5.2 sf_2 1 seq 1.2.15.3.5.2.2179 OTU 1 seq prokMSA_id:36228 AF402985.1 New Zealand: Rotorua Kuirau Park clone archaeap1 1.2.15.3.6 Unclassified 20 seqs 1.2.15.3.6.1 sf_1 14 seqs 1.2.15.3.6.1.2239 OTU 1 seq prokMSA_id:32461 AF325184.1 hot spring clone A10 1.2.15.3.6.1.2265 OTU 13 seqs prokMSA_id:14 AF068820.2 hydrothermal vent clone VC2.1 Arc13 prokMSA_id:15 AB019739.1 hydrothermal vent clone pMC2A10 prokMSA_id:719 AB019740.1 hydrothermal vent clone pSSMCA108 prokMSA_id:732 AB019742.1 hydrothermal vent clone pISA42 prokMSA_id:30970 AB052990.1 pPACMA-W clone prokMSA_id:35429 AB052983.1 pPACMA-M clone prokMSA_id:41367 AB052985.1 pPACMA-P clone prokMSA_id:55306 AF526962.1 East-Pacific Rise deep-sea hydrothermal vent clone pEPR719 prokMSA_id:56356 AF356635.1 Guaymas Basin clone G26_C56 prokMSA_id:63649 AF526964.1 East-Pacific Rise deep-sea hydrothermal vent clone pEPR159 prokMSA_id:63650 AF526965.1 East-Pacific Rise deep-sea hydrothermal vent clone pEPR193 prokMSA_id:63654 AF526961.1 East-Pacific Rise deep-sea hydrothermal vent clone pEPR707 prokMSA_id:68328 AF356637.1 Guaymas Basin clone G26_C73 1.2.15.3.6.2 sf_2 6 seqs 1.2.15.3.6.2.2144 OTU 6 seqs prokMSA_id:56630 AF544223.1 acid mine drainage clone AS4 prokMSA_id:58151 AF544221.1 acid mine drainage clone AS10 prokMSA_id:58154 AF544224.1 acid mine drainage clone ASL1 prokMSA_id:63279 AF523940.1 coal effluent wetland clone ARCP128 prokMSA_id:63280 AF523936.1 coal effluent wetland clone ARCP121 prokMSA_id:63281 AF523937.1 coal effluent wetland clone ARCP127 1.2.15.4 Unclassified 14 seqs 1.2.15.4.1 Unclassified 14 seqs 1.2.15.4.1.1 sf_1 11 seqs 1.2.15.4.1.1.2087 OTU 1 seq prokMSA_id:86464 AB108847.1 obtained deep-sea hydrothermal 1.2.15.4.1.1.2109 OTU 2 seqs prokMSA_id:733 M88077.1 Archaeal sp. (clone SBAR16) clone SBAR16 prokMSA_id:36345 AF223144.1 Santa Barbara Channel at 0m clone SB95-35 1.2.15.4.1.1.2208 OTU 2 seqs prokMSA_id:736 M88074.1 Archaeal sp. (clone SBAR1A) clone SBAR1A prokMSA_id:21548 AF290528.1 southern Aegean Sea at 10m depth clone AEGEAN_58 1.2.15.4.1.1.2303 OTU 6 seqs prokMSA_id:734 U11042.1 Archaebacterium clone OARB prokMSA_id:27739 AF424533.1 euryarchaeote clone MERTZ_21CM_5 prokMSA_id:88553 AY288386.1 Arctic Ocean; collected during SCICEX 96 (latitude 86.92N; longitude 38.28E) at depth 131 clone 96C-131-17 prokMSA_id:90085 AY288390.1 Arctic Ocean; collected during SCICEX 96 (latitude 86.92N; longitude 38.28E) at depth 55 clone 96C-55-10 prokMSA_id:90329 AY288393.1 Arctic Ocean; collected during SCICEX 96 (latitude 86.92N; longitude 38.28E) at depth 55 clone 96C-55-08 prokMSA_id:93343 AY360483.1 clone BSA4-89m 1.2.15.4.1.2 sf_2 2 seqs 1.2.15.4.1.2.2194 OTU 1 seq prokMSA_id:52811 AF226268.1 maize root clone ZmrA19 1.2.15.4.1.2.2251 OTU 1 seq prokMSA_id:725 AF146257.1 clone SCALE-3 1.2.15.4.1.3 sf_3 1 seq 1.2.15.4.1.3.2258 OTU 1 seq prokMSA_id:30004 AF268643.1 clone 61D 1.2.16 Unclassified 20 seqs 1.2.16.1 Unclassified 20 seqs 1.2.16.1.1 Unclassified 20 seqs 1.2.16.1.1.1 sf_1 2 seqs 1.2.16.1.1.1.2071 OTU 1 seq prokMSA_id:716 AF121989.1 sub-tropical Atlantic Ocean clone DCM3921 1.2.16.1.1.1.2283 OTU 1 seq prokMSA_id:6 Y18092.1 archeobacteria Clone clone Rot20 1.2.16.1.1.2 sf_2 2 seqs 1.2.16.1.1.2.2123 OTU 1 seq prokMSA_id:53752 AF223141.1 Mediterranean Sea at 450m clone ME-450_30 1.2.16.1.1.2.2169 OTU 1 seq prokMSA_id:713 U78206.1 marine planktonic clone SB95-72 1.2.16.1.1.3 sf_3 1 seq 1.2.16.1.1.3.2279 OTU 1 seq prokMSA_id:52 AJ133624.1 hypersaline brine sediment clone KTK28A 1.2.16.1.1.4 sf_4 13 seqs 1.2.16.1.1.4.2096 OTU 1 seq prokMSA_id:43890 AF418940.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HTA-H9 1.2.16.1.1.4.2132 OTU 7 seqs prokMSA_id:727 AJ227959.1 prokMSA_id:23326 AY063637.1 clone RS300-12 prokMSA_id:26892 AJ227932.1 prokMSA_id:45554 AJ227929.1 prokMSA_id:48711 AF225649.1 clone AS08-17 prokMSA_id:49712 AF225688.1 clone AS17-30 prokMSA_id:74688 AF225643.1 clone AS08-11 1.2.16.1.1.4.2164 OTU 5 seqs prokMSA_id:712 AF050619.1 contaminated aquifer clone WCHD3-33 prokMSA_id:722 AF050616.1 contaminated aquifer clone WCHD3-02 prokMSA_id:33637 AF418931.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HTA-C7 prokMSA_id:45960 AF424770.1 municipal wastewater sludge clone 33-1 prokMSA_id:62881 AB077226.1 oil-contaminated groundwater clone KuA16 1.2.16.1.1.5 sf_6 1 seq 1.2.16.1.1.5.2122 OTU 1 seq prokMSA_id:23572 AF223150.1 Mediterranean Sea at 450m clone ME-450_P9 1.2.16.1.1.6 sf_7 1 seq 1.2.16.1.1.6.2170 OTU 1 seq prokMSA_id:714 AJ133621.1 hypersaline brine sediment clone KTK4A 1.2.17 WSA2 8 seqs 1.2.17.1 Unclassified 8 seqs 1.2.17.1.1 Unclassified 8 seqs 1.2.17.1.1.1 sf_1 2 seqs 1.2.17.1.1.1.2181 OTU 2 seqs prokMSA_id:39716 AF419656.1 hydrothermal sediment clone AF419656 prokMSA_id:105401 AF419651.1 hydrothermal sediment clone AF419651 1.2.17.1.1.2 sf_2 6 seqs 1.2.17.1.1.2.2119 OTU 6 seqs prokMSA_id:201 AF050614.1 contaminated aquifer clone WCHA1-57 prokMSA_id:27098 AF424769.1 municipal wastewater sludge clone 39-2 prokMSA_id:32110 AF424763.1 municipal wastewater sludge clone 69-1 prokMSA_id:51118 AF424764.1 municipal wastewater sludge clone 46-1 prokMSA_id:52425 AF424765.1 municipal wastewater sludge clone 44A-1 prokMSA_id:62886 AB077223.1 oil-contaminated groundwater clone KuA13 1.2.2 FCG1 10 seqs 1.2.2.1 Unclassified 10 seqs 1.2.2.1.1 Unclassified 10 seqs 1.2.2.1.1.1 sf_1 1 seq 1.2.2.1.1.1.2219 OTU 1 seq prokMSA_id:772 AB019719.1 hydrothermal vent clone pMC2A209 1.2.2.1.1.2 sf_2 9 seqs 1.2.2.1.1.2.2073 OTU 4 seqs prokMSA_id:237 AF119128.1 deep-sea sediment clone CRA8-27cm prokMSA_id:58504 AB072723.1 subsurface prokMSA_id:78558 AB094532.1 subseafloor sediments Sea Okhotsk clone OHKA2.33 prokMSA_id:102536 AY592241.1 deep-sea mud volcano clone BC20-1A-12 1.2.2.1.1.2.2622 OTU 1 seq prokMSA_id:917 AF119137.1 deep-sea sediment clone APA3-11cm 1.2.2.1.1.2.2626 OTU 1 seq prokMSA_id:1010 AF068822.3 hydrothermal vent clone VC2.1 Arc31 1.2.2.1.1.2.2629 OTU 1 seq prokMSA_id:1019 AB019720.1 hydrothermal vent clone pMC2A36 1.2.2.1.1.2.2651 OTU 1 seq prokMSA_id:16284 AF419642.1 hydrothermal sediment clone AF419642 1.2.2.1.1.2.2654 OTU 1 seq prokMSA_id:830 AB019721.1 hydrothermal vent clone pMC2A308 1.2.3 FCG2 4 seqs 1.2.3.1 Unclassified 4 seqs 1.2.3.1.1 Unclassified 4 seqs 1.2.3.1.1.1 sf_1 3 seqs 1.2.3.1.1.1.2226 OTU 3 seqs prokMSA_id:778 AB019714.1 hydrothermal vent clone pMC2A249 prokMSA_id:779 AB019715.1 hydrothermal vent clone pMC2A14 prokMSA_id:780 AB019716.1 hydrothermal vent clone pSSMCA1 1.2.3.1.1.2 sf_2 1 seq 1.2.3.1.1.2.2212 OTU 1 seq prokMSA_id:771 AB019717.1 hydrothermal vent clone pMCA256 1.2.4 Halobacteria 179 seqs 1.2.4.1 Halobacteriales 157 seqs 1.2.4.1.1 Halobacteriaceae 157 seqs 1.2.4.1.1.1 sf_1 154 seqs 1.2.4.1.1.1.2064 OTU 1 seq prokMSA_id:690 D50850.1 Haloarcula mukohataei 1.2.4.1.1.1.2069 OTU 1 seq prokMSA_id:696 AF071880.1 "Halobacter utahensis" 1.2.4.1.1.1.2086 OTU 1 seq prokMSA_id:37730 AF333759.2 Halobacteriaceae gen. sp. str. 56 1.2.4.1.1.1.2100 OTU 1 seq prokMSA_id:615 D63572.1 Halorubrum distributum 1.2.4.1.1.1.2106 OTU 3 seqs prokMSA_id:23696 AJ344306.1 Austria clone HW107 prokMSA_id:53794 AJ278935.1 prokMSA_id:72249 AJ278937.1 1.2.4.1.1.1.2108 OTU 2 seqs prokMSA_id:21201 AJ344311.1 Austria clone HW88 prokMSA_id:29270 AJ344309.1 Austria clone HW8 1.2.4.1.1.1.2111 OTU 6 seqs prokMSA_id:20446 AF320478.1 Halosimplex carlsbadense str. 2-9-1; ATCC BAA-75; JCM 11222 prokMSA_id:21614 AF320479.1 Halosimplex carlsbadense str. 2-9-1; ATCC BAA-75; JCM 11222 prokMSA_id:84278 AB108677.1 Halosimplex carlsbadense str. 2-9-1 prokMSA_id:85089 AB072814.1 Halosimplex carlsbadense str. 2-9-1 prokMSA_id:85668 AB072815.1 Halosimplex carlsbadense str. 2-9-1 prokMSA_id:106645 AJ586108.1 Halosimplex carlsbadense str. 2-9-1(T) 1.2.4.1.1.1.2115 OTU 3 seqs prokMSA_id:18167 AF257283.1 marine euryarchaeote clone DH148-Y19 prokMSA_id:34968 AF257282.1 marine euryarchaeote clone DH148-Y15 prokMSA_id:51102 AF257279.1 marine euryarchaeote clone DH148-Y16 1.2.4.1.1.1.2135 OTU 4 seqs prokMSA_id:47411 AF320480.1 Halosimplex carlsbadense str. 2-9-1; ATCC BAA-75; JCM 11222 prokMSA_id:83805 AB108676.1 Halosimplex carlsbadense str. 2-9-1 prokMSA_id:86270 AB072816.1 Halosimplex carlsbadense str. 2-9-1 prokMSA_id:106491 AJ586107.1 Halosimplex carlsbadense str. 2-9-1(T) 1.2.4.1.1.1.2137 OTU 2 seqs prokMSA_id:647 AF027738.1 Halorubrum trapanicum prokMSA_id:45943 AF367370.1 Natrinema sp. str. R-fish 1.2.4.1.1.1.2142 OTU 2 seqs prokMSA_id:27020 AF435112.1 Halococcus tibetense str. ZB28 prokMSA_id:66381 AF505680.1 China: Tibet Zabuye Lake clone ZB-A22 1.2.4.1.1.1.2148 OTU 11 seqs prokMSA_id:618 X82169.1 Halorubrum sodomense prokMSA_id:624 X82167.1 Halorubrum saccharovorum prokMSA_id:625 U17364.1 Halorubrum saccharovorum prokMSA_id:626 D87972.1 Halorubrum vacuolatum prokMSA_id:627 X82170.1 Halorubrum lacusprofundi prokMSA_id:632 U17365.1 Halorubrum lacusprofundi prokMSA_id:23129 AJ270251.1 haloarchaeon str. 54R prokMSA_id:35867 AJ270246.1 haloarchaeon str. MAlk006.3 prokMSA_id:45762 AF435111.1 Halorubrum tibetense str. ZB49 prokMSA_id:57545 AY149598.1 Halorubrum tibetense str. 8W8 prokMSA_id:109406 AY826412.1 Halobacterium sp. str. XH3 1.2.4.1.1.1.2163 OTU 1 seq prokMSA_id:645 AB009624.1 Halobacterium sp. arg-4 1.2.4.1.1.1.2167 OTU 11 seqs prokMSA_id:600 D11107.1 Haloferax mediterranei prokMSA_id:604 K00421.1 Haloferax volcanii prokMSA_id:606 AF015976.2 salt marsh sediment clone 2C82 prokMSA_id:608 AF069950.1 Haloferax sp. D1227 prokMSA_id:25672 AB074566.1 Haloferax volcanii str. NCIMB 2287 prokMSA_id:29381 AF015988.2 salt marsh sediment clone 2MT310 prokMSA_id:41199 AF015982.2 salt marsh sediment clone 2MT103 prokMSA_id:47309 AB037474.2 Haloferax alexandrinus prokMSA_id:89487 AY292395.1 haloarchaeon 8AHG prokMSA_id:101058 AB081732.1 Haloferax lucentense str. JCM 9276 prokMSA_id:104127 AY458601.1 Haloferax sulfurifontis str. M6 1.2.4.1.1.1.2174 OTU 2 seqs prokMSA_id:35866 AF142983.1 clone ORGANIC5_A prokMSA_id:37132 AF142985.1 clone ORGANIC1_A 1.2.4.1.1.1.2175 OTU 21 seqs prokMSA_id:633 X03407.1 Halobacterium halobium prokMSA_id:634 M11583.1 Halobacterium halobium prokMSA_id:635 AF110768.1 Halobacterium sp. 9R prokMSA_id:636 U68538.1 Halobacterium salinarum prokMSA_id:637 M38280.1 Halobacterium halobium prokMSA_id:641 K02971.1 Halobacterium cutirubrum prokMSA_id:23901 AB074565.1 Halobacterium sp. str. NCIMB 741 prokMSA_id:32933 AE005128.1 Halobacterium sp. NRC-1 prokMSA_id:38000 AJ270239.1 haloarchaeon str. BbpA.1 prokMSA_id:40871 AB074301.1 Halobacterium sp. str. NCIMB 733 prokMSA_id:44211 AJ270238.1 haloarchaeon str. B1bra.5 prokMSA_id:47635 AF355101.1 Halobacterium sp. str. JP-6 prokMSA_id:50435 AB074299.1 Halobacterium salinarum str. NCIMB 2288 prokMSA_id:54099 NC_002607.1 Halobacterium sp. str. NRC-1 prokMSA_id:63193 AJ496185.1 Halobacterium salinarum prokMSA_id:68649 AB081731.1 Halobacterium sp. str. JCM 9447 prokMSA_id:81508 AJ548827.1 Halobacterium noricense str. A1 prokMSA_id:82712 AY232300.1 Halobacterium sp. str. HM13 prokMSA_id:83852 AY232297.1 Halobacterium sp. str. HM01 prokMSA_id:83927 AY232298.1 Halobacterium sp. str. HM02 prokMSA_id:86046 AY232299.1 Halobacterium sp. str. HM11 1.2.4.1.1.1.2176 OTU 1 seq prokMSA_id:659 AF142876.1 clone DEEP-2 1.2.4.1.1.1.2180 OTU 2 seqs prokMSA_id:27978 AB073365.1 Halobacterium sp. str. NCIMB 763 prokMSA_id:36299 AB073366.1 Halobacterium sp. str. NCIMB 763 1.2.4.1.1.1.2189 OTU 5 seqs prokMSA_id:676 Z28387.1 Halococcus salifodinae prokMSA_id:678 AB004877.1 Halococcus salifodinae prokMSA_id:679 AJ238897.1 Halococcus salifodinae prokMSA_id:684 AJ131458.1 Halococcus salifodinae prokMSA_id:685 AB004876.1 Halococcus saccharolyticus 1.2.4.1.1.1.2200 OTU 10 seqs prokMSA_id:686 D11106.2 Halococcus morrhuae prokMSA_id:687 X72588.1 Halococcus morrhuae prokMSA_id:688 D63786.1 "Halorubrum trapanicum" prokMSA_id:689 X00662.1 Halococcus morrhuae prokMSA_id:17584 AB074302.1 Halobacterium sp. str. NCIMB 734 prokMSA_id:27023 AB074304.1 Halobacterium sp. str. NCIMB 765 prokMSA_id:38435 AB074303.1 Halobacterium sp. str. NCIMB 765 prokMSA_id:39472 AJ420376.1 Halococcus dombrowskii str. H4 prokMSA_id:52396 AJ344307.1 Austria clone HW50 prokMSA_id:83880 AY243109.1 Halococcus qingdaogense str. CM5 1.2.4.1.1.1.2203 OTU 1 seq prokMSA_id:611 M33803.1 Haloferax lucentense subsp. PHENON K str. Aa 2.2 1.2.4.1.1.1.2205 OTU 2 seqs prokMSA_id:46771 AJ344315.1 Austria clone HW25 prokMSA_id:49132 AJ344314.1 Austria clone HW22 1.2.4.1.1.1.2207 OTU 2 seqs prokMSA_id:658 AF015984.2 salt marsh sediment clone 2MT16 prokMSA_id:17936 AF015967.2 salt marsh sediment clone 2C129 1.2.4.1.1.1.2210 OTU 10 seqs prokMSA_id:643 D87971.1 Natronomonas pharaonis prokMSA_id:27407 AJ344320.1 Austria clone HW23 prokMSA_id:56234 AJ517877.1 soda lake clone mHK12.1 prokMSA_id:57386 AJ517901.1 soda lake clone E10.1 prokMSA_id:57390 AJ517895.1 soda lake clone mOO44.2 prokMSA_id:57391 AJ517892.1 soda lake clone mCMC46.6 prokMSA_id:57392 AJ517890.1 soda lake clone mCMC38.5 prokMSA_id:57395 AJ517891.1 soda lake clone mCMC46.5 prokMSA_id:57397 AJ517879.1 soda lake clone mHK36.1 prokMSA_id:70801 AJ308012.1 clone EMF51 1.2.4.1.1.1.2211 OTU 1 seq prokMSA_id:37525 AF199372.1 isolate str. D3.5-B 1.2.4.1.1.1.2213 OTU 30 seqs prokMSA_id:646 AF115478.1 "Natrinema thermotolerans" prokMSA_id:657 Y14028.1 "Natronobacterium bangense" prokMSA_id:660 AB005656.1 "Natronobacterium tibetense" prokMSA_id:665 AB004878.1 Halococcus turkmenicus prokMSA_id:668 X72495.1 Natrialba magadii prokMSA_id:669 AJ001376.1 "Natronobacterium wudunaoensis" prokMSA_id:671 AJ004806.1 "Natronobacterium chahannaoensis" prokMSA_id:672 D88256.1 Natrialba sp. ATCC 43988 prokMSA_id:674 Z28378.1 Natronococcus occultus prokMSA_id:675 D43628.1 Natronococcus amylolyticus prokMSA_id:21979 AB046875.1 Natrialba asiatica str. Aidin-3 prokMSA_id:24766 AB023426.1 Natrinema versiforme str. XF10 prokMSA_id:28138 AB049461.3 Natrialba sp. str. Tunisia HMg-25 prokMSA_id:28549 AB046927.1 Natronorubrum sp. str. Tenzan-10 prokMSA_id:32045 X92173.1 soda lake isolate 93lLM4 prokMSA_id:32934 X92172.1 soda lake isolate 89M4 prokMSA_id:36767 AB049462.1 Natrialba sp. str. Tunisia HMg-27 prokMSA_id:38317 AF251941.1 Natrialba aegyptia prokMSA_id:40112 AF478471.1 Halobacteriaceae gen. sp. str. H1 prokMSA_id:42055 X92175.1 soda lake isolate 86M4 prokMSA_id:43132 AF333760.2 Halobiforma haloterrestris str. 135 prokMSA_id:43283 X92174.1 soda lake isolate 98NT4 prokMSA_id:47016 AB046926.1 Natronorubrum sp. str. Wadi Natrun-19 prokMSA_id:51196 AF009601.1 "Natronobacterium innermongoliae" prokMSA_id:52324 AF251285.1 Natronococcus xinjiangense prokMSA_id:58361 AJ003193.1 Natrialba hulunbeirensis str. X21 prokMSA_id:58987 AY055733.1 Haloterrigena thermotolerans str. H13 prokMSA_id:72475 AF262026.1 Natrialba hulunbeirensis str. AS1.1986 prokMSA_id:81102 AY208972.1 Natrinema ajinwuensis str. AJ2 prokMSA_id:83240 AY232296.1 Natrinema sp. str. HM06 1.2.4.1.1.1.2217 OTU 1 seq prokMSA_id:41147 AF211311.1 hypersaline black mud clone MT15 1.2.4.1.1.1.2218 OTU 1 seq prokMSA_id:609 AF002984.1 Halogeometricum borinquense 1.2.4.1.1.1.2222 OTU 1 seq prokMSA_id:49296 AJ347778.1 brine-seawater interface Shaban Deep Red Sea clone ST-3K67A 1.2.4.1.1.1.2254 OTU 6 seqs prokMSA_id:612 L00922.1 Halobacterium sp.Ch2 prokMSA_id:613 D32081.1 Halobacterium sp. AUS-1 prokMSA_id:616 X82168.1 Halorubrum trapanicum prokMSA_id:617 D32082.2 Halobacterium sp. AUS-2 prokMSA_id:42756 S70839.1 Halorubrum coriense str. Ch2 prokMSA_id:43177 AJ400624.1 halophilic isolate str. NaxosII 1.2.4.1.1.1.2256 OTU 1 seq prokMSA_id:73223 AJ308017.1 clone EMF3 1.2.4.1.1.1.2260 OTU 1 seq prokMSA_id:602 AF142883.1 clone DEEP-9 1.2.4.1.1.1.2262 OTU 1 seq prokMSA_id:605 AF015964.2 salt marsh sediment clone 1MT315 1.2.4.1.1.1.2267 OTU 1 seq prokMSA_id:26302 AF211313.1 hypersaline black mud clone MT14 1.2.4.1.1.1.2301 OTU 1 seq prokMSA_id:623 X53570.1 Halorubrum saccharovorum str. NCIMB 2081 1.2.4.1.1.1.2307 OTU 4 seqs prokMSA_id:39274 AF196290.1 all depths water column at various limnological stages isolate str. JDS-1 prokMSA_id:62506 AF513927.1 euryarchaeote clone LA1-A10 prokMSA_id:64078 AF477953.1 solar saltern clone prokMSA_id:71057 AF477954.1 solar saltern clone 1.2.4.1.1.2 sf_4 3 seqs 1.2.4.1.1.2.2136 OTU 3 seqs prokMSA_id:30847 AF424771.1 municipal wastewater sludge clone 38B-1 prokMSA_id:32775 AF424774.1 municipal wastewater sludge clone 41-1 prokMSA_id:34918 D87970.1 Natronobacterium gregoryi 1.2.4.2 Unclassified 22 seqs 1.2.4.2.1 Unclassified 22 seqs 1.2.4.2.1.1 sf_2 1 seq 1.2.4.2.1.1.2295 OTU 1 seq prokMSA_id:595 AF118659.1 anoxic sediment clone pBRKC22 1.2.4.2.1.2 sf_4 20 seqs 1.2.4.2.1.2.2065 OTU 1 seq prokMSA_id:46014 AJ278931.1 1.2.4.2.1.2.2081 OTU 8 seqs prokMSA_id:639 AB012051.1 alkaline saltern clone MSP9 prokMSA_id:649 AB012049.1 alkaline saltern clone MSP1 prokMSA_id:650 AB012052.1 alkaline saltern clone MSP11 prokMSA_id:651 AB012053.1 alkaline saltern clone MSP12 prokMSA_id:653 AB012055.1 alkaline saltern clone MSP16 prokMSA_id:654 AB012056.1 alkaline saltern clone MSP17 prokMSA_id:655 AB012057.1 alkaline saltern clone MSP22 prokMSA_id:656 AB012058.1 alkaline saltern clone MSP23 1.2.4.2.1.2.2091 OTU 1 seq prokMSA_id:33887 X92171.1 soda lake isolate 82M4 1.2.4.2.1.2.2112 OTU 3 seqs prokMSA_id:24020 AJ344318.1 Austria clone HW10 prokMSA_id:46041 AJ344312.1 Austria clone HW3 prokMSA_id:50299 AJ344303.1 Austria clone HW5 1.2.4.2.1.2.2120 OTU 2 seqs prokMSA_id:39318 X84331.1 hypersaline clone X84331 prokMSA_id:43013 X84084.1 hypersaline clone X84084 1.2.4.2.1.2.2197 OTU 1 seq prokMSA_id:18525 X92170.1 soda lake isolate 93dLM4 1.2.4.2.1.2.2290 OTU 3 seqs prokMSA_id:596 AF142882.1 clone DEEP-8 prokMSA_id:597 AF142881.1 clone DEEP-7 prokMSA_id:598 AF142880.1 clone DEEP-6 1.2.4.2.1.2.2297 OTU 1 seq prokMSA_id:599 AF142879.1 clone DEEP-5 1.2.4.2.1.3 sf_5 1 seq 1.2.4.2.1.3.2066 OTU 1 seq prokMSA_id:692 AB012059.1 alkaline saltern clone MSP41 1.2.5 Methanobacteria 108 seqs 1.2.5.1 Methanobacteriales 108 seqs 1.2.5.1.1 Methanobacteriaceae 106 seqs 1.2.5.1.1.1 sf_1 94 seqs 1.2.5.1.1.1.2082 OTU 1 seq prokMSA_id:48957 AB050216.1 clone SAGMA-K 1.2.5.1.1.1.2110 OTU 5 seqs prokMSA_id:118 AF054208.1 Methanobrevibacter smithii prokMSA_id:125 U55238.1 Methanobrevibacter sp.HO prokMSA_id:95844 AY196673.1 Methanobrevibacter sp. str. ZA-10 prokMSA_id:100911 AY351485.1 rumen fluid sheep fed grain-based diet clone CSIRO2.19 prokMSA_id:105357 AY351491.1 rumen fluid sheep fed quality grain-based diet clone CSIRO3.03 1.2.5.1.1.1.2124 OTU 2 seqs prokMSA_id:45914 AF293557.1 termite gut homogenate proctodeal segment P3 clone P3-Ar-10 prokMSA_id:51931 AF293568.1 termite gut homogenate proctodeal segment P3 clone P3-Ar-23 1.2.5.1.1.1.2145 OTU 1 seq prokMSA_id:75 Z29436.1 Methanobacterium formicicum str. DSM 3636 Metopus striatus 1.2.5.1.1.1.2151 OTU 7 seqs prokMSA_id:133 X99044.1 Methanobacterium subterraneum prokMSA_id:134 AF028689.1 Methanobacterium formicicum prokMSA_id:136 X99045.1 Methanobacterium subterraneum prokMSA_id:177 M59124.1 Methanobacterium bryantii prokMSA_id:179 Y18073.1 Methanobacterium sp. str. Bab-1 prokMSA_id:198 M36508.1 Methanobacterium formicicum prokMSA_id:40123 AF028690.1 Methanobacterium sp. DSM 11106 1.2.5.1.1.1.2162 OTU 1 seq prokMSA_id:57 M59139.1 Methanosphaera stadtmaniae 1.2.5.1.1.1.2173 OTU 19 seqs prokMSA_id:216 X99048.1 Methanobacterium thermophilum prokMSA_id:217 X89406.1 Methanothermobacter wolfeii str. DSM2970 prokMSA_id:219 X68716.1 Methanobacterium thermoautotrophicum prokMSA_id:221 X68715.1 Methanobacterium thermoautotrophicum prokMSA_id:222 X68717.1 Methanobacterium thermoautotrophicum prokMSA_id:223 X15364.1 Methanobacterium thermoautotrophicum prokMSA_id:225 X99047.1 Methanobacterium thermoflexum prokMSA_id:226 X68714.1 Methanobacterium thermoautotrophicum prokMSA_id:227 Z37156.1 Methanobacterium thermoautotrophicum prokMSA_id:233 AB020530.1 Methanothermobacter thermautotrophicus str. KHT-2 prokMSA_id:234 X68711.1 Methanobacterium thermoautotrophicum prokMSA_id:235 X68719.1 Methanobacterium thermoautotrophicum prokMSA_id:236 X99046.1 Methanobacterium defluvii prokMSA_id:239 X68720.1 Methanobacterium thermoautotrophicum prokMSA_id:241 X68712.1 Methanobacterium thermoautotrophicum prokMSA_id:251 X68713.1 Methanobacterium thermoautotrophicum prokMSA_id:67146 AB084241.1 solid waste landfill clone LCB prokMSA_id:67147 AB084240.1 solid waste landfill clone LCA prokMSA_id:81334 AB104858.1 Methanothermobacter wolfeii str. DSM 2970 1.2.5.1.1.1.2241 OTU 8 seqs prokMSA_id:77 U55233.1 Methanobrevibacter smithii prokMSA_id:122 U55234.1 Methanobrevibacter smithii prokMSA_id:123 U55235.1 Methanobrevibacter smithii prokMSA_id:130 AJ009958.1 Methanobrevibacter sp.SM9 prokMSA_id:29783 AB034185.1 rumen clone M6 prokMSA_id:100449 AY351482.1 rumen fluid sheep fed grain-based diet clone CSIRO2.16 prokMSA_id:105658 AY351493.1 rumen fluid sheep fed quality grain-based diet clone CSIRO3.05 prokMSA_id:106590 AY351499.1 rumen fluid sheep fed quality grain-based diet clone CSIRO3.11 1.2.5.1.1.1.2272 OTU 44 seqs prokMSA_id:79 AF028688.1 Methanobacterium bryantii prokMSA_id:86 U55237.1 Methanobrevibacter sp.GS prokMSA_id:114 AJ009959.1 Methanobrevibacter sp.NT7 prokMSA_id:115 AB017514.1 Methanobrevibacter sp.MB-9 prokMSA_id:127 U55240.1 Methanobrevibacter sp.SH prokMSA_id:128 U55241.1 Methanobrevibacter sp.RT prokMSA_id:138 U41095.1 Methanobrevibacter cuticularis prokMSA_id:139 U82322.1 Methanobrevibacter filiformis prokMSA_id:141 AB026925.1 Methanobrevibacter sp. HW3 prokMSA_id:150 U62533.1 Methanobrevibacter curvatus prokMSA_id:152 AB026915.1 Methanobrevibacter sp. RsW2 prokMSA_id:153 AB026919.1 Methanobrevibacter sp. RsI17 prokMSA_id:154 AB026920.1 Methanobrevibacter sp. LHD2 prokMSA_id:158 AB026924.1 Methanobrevibacter sp. HW2 prokMSA_id:175 AB026918.1 Methanobrevibacter sp. RsI12 prokMSA_id:21086 AB034188.1 rumen clone 15 prokMSA_id:22694 AF242652.1 Methanobrevibacter acididurans str. ATM prokMSA_id:24414 AB065294.1 Methanobrevibacter arboriphilus str. SA prokMSA_id:38084 AB034183.1 rumen clone 956 prokMSA_id:39249 AB033293.1 Methanobrevibacter sp. HW23 prokMSA_id:39741 AB033290.1 Methanobrevibacter sp. LRsD4 prokMSA_id:43504 AB033291.1 Methanobrevibacter sp. RsW3 prokMSA_id:84255 AY251026.1 freshwater sediment clone 15ar16 prokMSA_id:92357 AY350742.1 Methanobacterium sp. str. 8-2 prokMSA_id:95916 AY196666.1 Methanobrevibacter ruminantium str. M1 prokMSA_id:96099 AY196658.1 Methanobacterium bryantii str. MOHG prokMSA_id:97471 AY196657.1 Methanobacterium bryantii str. MOH prokMSA_id:97554 AY196659.1 Methanobacterium formicicum str. MF prokMSA_id:98996 AY351448.1 rumen fluid sheep grazing on forage clone CSIRO1.15 prokMSA_id:100034 AY351467.1 rumen fluid sheep fed grain-based diet clone CSIRO2.01 prokMSA_id:100134 AY351480.1 rumen fluid sheep fed grain-based diet clone CSIRO2.14 prokMSA_id:100287 AY351481.1 rumen fluid sheep fed grain-based diet clone CSIRO2.15 prokMSA_id:101570 AY351489.1 rumen fluid sheep fed quality grain-based diet clone CSIRO3.01 prokMSA_id:102367 AY351434.1 rumen fluid sheep grazing on forage clone CSIRO1.01 prokMSA_id:102684 AY351436.1 rumen fluid sheep grazing on forage clone CSIRO1.03 prokMSA_id:102931 AY351450.1 rumen fluid sheep grazing on forage clone CSIRO1.17 prokMSA_id:103975 AJ550156.1 Methanobrevibacter sp. str. AbM4 prokMSA_id:105255 AY351478.1 rumen fluid sheep fed grain-based diet clone CSIRO2.12 prokMSA_id:105963 AY351495.1 rumen fluid sheep fed quality grain-based diet clone CSIRO3.07 prokMSA_id:107657 AY351446.1 rumen fluid sheep grazing on forage clone CSIRO1.13 prokMSA_id:107802 AY351447.1 rumen fluid sheep grazing on forage clone CSIRO1.14 prokMSA_id:109776 AB181817.1 Methanobacterium sp. str. Ps21 prokMSA_id:109980 AB181819.1 Methanobacterium sp. str. Tc3 prokMSA_id:110257 AB181818.1 Methanobacterium sp. str. Mg38 1.2.5.1.1.1.2285 OTU 6 seqs prokMSA_id:203 U81775.2 anaerobic digestor clone vadinDC06 prokMSA_id:18599 AF276958.1 Methanobacterium curvum prokMSA_id:44183 AF233586.1 Methanobacterium congolense str. C prokMSA_id:77878 AJ459882.1 bog peat clone AEC 3 M71 prokMSA_id:77966 AJ459884.1 bog peat clone AEC 2 M46 prokMSA_id:78121 AJ459876.1 bog peat clone AMC 3 M14 1.2.5.1.1.2 sf_2 10 seqs 1.2.5.1.1.2.2116 OTU 1 seq prokMSA_id:21835 AF199379.1 anoxic hypolimnion at 4.75m isolate str. J4.75-15 1.2.5.1.1.2.2128 OTU 1 seq prokMSA_id:200 AJ131265.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL68 1.2.5.1.1.2.2165 OTU 7 seqs prokMSA_id:58991 AJ294857.1 marine sediment depth 5-7 cm clone 19b-9 prokMSA_id:59050 AJ294895.1 marine sediment depth 10-12 cm clone 19c-50 prokMSA_id:59052 AJ294888.1 marine sediment depth 10-12 cm clone 19c-18 prokMSA_id:59057 AJ294885.1 marine sediment depth 10-12 cm clone 19c-10 prokMSA_id:59071 AJ294870.1 marine sediment depth 5-7 cm clone 19b-41 prokMSA_id:59085 AJ294853.1 marine sediment depth 5-7 cm clone 19b-2 prokMSA_id:59086 AJ294852.1 marine sediment depth 5-7 cm clone 19b-1 1.2.5.1.1.2.2284 OTU 1 seq prokMSA_id:44789 AF199378.1 anoxic hypolimnion at 4.75m isolate str. J4.75-12 1.2.5.1.1.3 sf_4 2 seqs 1.2.5.1.1.3.2247 OTU 2 seqs prokMSA_id:29032 AJ297912.1 clone SM1K20 prokMSA_id:52505 AJ296315.1 clone SM1 1.2.5.1.2 Methanothermaceae 2 seqs 1.2.5.1.2.1 sf_1 1 seq 1.2.5.1.2.1.2261 OTU 1 seq prokMSA_id:46 M32222.1 Methanothermus fervidus 1.2.5.1.2.2 sf_2 1 seq 1.2.5.1.2.2.2266 OTU 1 seq prokMSA_id:48 AF118660.1 anoxic sediment clone pBRKC82 1.2.6 Methanococci 20 seqs 1.2.6.1 Methanococcales 20 seqs 1.2.6.1.1 Methanococcaceae 20 seqs 1.2.6.1.1.1 sf_1 10 seqs 1.2.6.1.1.1.2147 OTU 3 seqs prokMSA_id:69659 AF356632.1 Guaymas Basin clone G26_C49 prokMSA_id:69745 AF356629.1 Guaymas Basin clone G26_C45 prokMSA_id:73911 AF356628.1 Guaymas Basin clone G26_C5 1.2.6.1.1.1.2191 OTU 4 seqs prokMSA_id:37 M36507.1 Methanococcus vannielii prokMSA_id:43 AF005049.1 Methanococcus maripaludis prokMSA_id:106353 BX957219.1 Methanococcus maripaludis str. S2 prokMSA_id:108402 NC_005791.1 Methanococcus maripaludis S2 1.2.6.1.1.1.2202 OTU 1 seq prokMSA_id:48249 AB057722.1 Methanothermococcus okinawensis str. IH1 1.2.6.1.1.1.2233 OTU 1 seq prokMSA_id:26 M59128.1 Methanococcus thermolithotrophicus 1.2.6.1.1.1.2281 OTU 1 seq prokMSA_id:36765 AF306670.1 Methanococcus sp. str. P2F9701a 1.2.6.1.1.2 sf_2 1 seq 1.2.6.1.1.2.2271 OTU 1 seq prokMSA_id:2 AJ227954.1 1.2.6.1.1.3 sf_3 2 seqs 1.2.6.1.1.3.2104 OTU 1 seq prokMSA_id:18 AJ227955.1 1.2.6.1.1.3.2236 OTU 1 seq prokMSA_id:54381 AY063679.1 clone RS0-24 1.2.6.1.1.4 sf_4 1 seq 1.2.6.1.1.4.2196 OTU 1 seq prokMSA_id:29288 AJ227951.1 1.2.6.1.1.5 sf_5 1 seq 1.2.6.1.1.5.2154 OTU 1 seq prokMSA_id:52158 AF424536.1 euryarchaeote clone MERTZ_21CM_297 1.2.6.1.1.6 sf_6 5 seqs 1.2.6.1.1.6.2141 OTU 5 seqs prokMSA_id:27 AJ236467.1 clone ST1-16 prokMSA_id:28 AJ236483.1 clone S15-2 prokMSA_id:29 AJ236485.1 clone S15-4 prokMSA_id:30 AJ236487.1 clone S15-6 prokMSA_id:31 AJ236515.1 clone S30-7 1.2.7 Methanomicrobia 420 seqs 1.2.7.1 ANME-1 32 seqs 1.2.7.1.1 Unclassified 32 seqs 1.2.7.1.1.1 sf_1 32 seqs 1.2.7.1.1.1.2149 OTU 4 seqs prokMSA_id:746 AB019758.1 hydrothermal vent clone pISA16 prokMSA_id:71793 AF419625.1 hydrothermal sediment clone AF419625 prokMSA_id:72343 AF419624.1 hydrothermal sediment clone AF419624 prokMSA_id:98928 AJ578130.1 microbial mat clone BS-M-D6 1.2.7.1.1.1.2183 OTU 13 seqs prokMSA_id:18834 AF134385.1 anaerobic methane rich marine sediments clone TA1b12 prokMSA_id:48616 AF134383.1 anaerobic methane rich marine sediments clone BA2e8 prokMSA_id:53542 AY053467.1 physically with gas hydrate clone AT425_ArB7 prokMSA_id:93665 AY324375.1 GZfosmid Library Plate 25D1 group: ANME-1 clone GZfosARC_25D1 prokMSA_id:93719 AY324374.1 GZfosmid Library Plate 1C11 group: ANME-1 clone GZfosARC_1C11 prokMSA_id:93742 AY324378.1 Blake Ridge PC26 clone BR34ARC_C03 prokMSA_id:99544 AJ578134.1 microbial mat clone BS-S-D7 prokMSA_id:99700 AJ578135.1 microbial mat clone BS-S-E1 prokMSA_id:100922 AY592291.1 deep-sea mud volcano clone BC20-2A-17 prokMSA_id:101893 AJ578089.1 marine sediments above gas hydrate clone HydCal61 prokMSA_id:102902 AY714860.1 Eel River sediment clone GZfos34G5 prokMSA_id:103348 AJ578123.1 microbial mat clone BS-K-411 prokMSA_id:104177 AJ578141.1 microbial mat clone BS-SR-D3 1.2.7.1.1.1.2187 OTU 1 seq prokMSA_id:71091 AF354137.1 marine sediment clone Eel-36a2G10 1.2.7.1.1.1.2214 OTU 6 seqs prokMSA_id:30999 AF419626.1 hydrothermal sediment clone AF419626 prokMSA_id:68319 AF356646.1 Guaymas Basin clone G72_C65 prokMSA_id:68320 AF356644.1 Guaymas Basin clone G72_C59 prokMSA_id:68325 AF356641.1 Guaymas Basin clone G72_C3 prokMSA_id:70411 AF356640.1 Guaymas Basin clone G72_C2 prokMSA_id:71148 AF419654.1 hydrothermal sediment clone AF419654 1.2.7.1.1.1.2257 OTU 8 seqs prokMSA_id:243 AF134387.1 anaerobic methane rich marine sediments clone TA1a9 prokMSA_id:20341 AF134386.1 anaerobic methane rich marine sediments clone TA1a6 prokMSA_id:35808 AF134381.1 anaerobic methane rich marine sediments clone BA1a2 prokMSA_id:36790 AF134382.1 anaerobic methane rich marine sediments clone BA1b1 prokMSA_id:94129 AY324382.1 Monterey Canyon clone F17.1ARC_A01 prokMSA_id:102956 AY714848.1 Eel River sediment clone GZfos27G5 prokMSA_id:104986 AY714814.1 Eel River sediment clone GZfos10C7 prokMSA_id:105452 AY714817.1 Eel River sediment clone GZfos12E1 1.2.7.2 Methanomicrobiales 213 seqs 1.2.7.2.1 Methanocorpusculaceae 36 seqs 1.2.7.2.1.1 sf_1 36 seqs 1.2.7.2.1.1.2077 OTU 18 seqs prokMSA_id:347 M96976.1 Trimyema sp. archaeal symbiont prokMSA_id:348 Z16412.1 Trimyema sp. archaeal symbiont prokMSA_id:349 Z13957.1 Metopus contortus archaeal symbiont prokMSA_id:25498 AF376793.1 methanogenic upf anaerobic hybrid reactor (MUAHR) clone prokMSA_id:34398 AF376791.1 methanogenic upf anaerobic hybrid reactor (MUAHR) clone prokMSA_id:82638 AY239517.1 whey-based wastewater clone CARB_AR1_1 prokMSA_id:84012 AY231361.1 wastewater clone AR2_6 prokMSA_id:84058 AY239520.1 whey-based wastewater clone CARB_AR1_4 prokMSA_id:84212 AY231353.1 wastewater clone AR1R2_3 prokMSA_id:84307 AY231351.1 wastewater clone AR1R2_1 prokMSA_id:85040 AY231364.1 wastewater clone AR2_10 prokMSA_id:85920 AY239522.1 whey-based wastewater clone CARB_AR1_6 prokMSA_id:86048 AY231354.1 wastewater clone AR1R2_4 prokMSA_id:86278 AY231355.1 wastewater clone AR1_5 prokMSA_id:92492 AY341317.1 -salt anaerobic sulfur spring clone ZAR20 prokMSA_id:92733 AY341307.1 -salt anaerobic sulfur spring clone ZAR11 prokMSA_id:92887 AY341315.1 -salt anaerobic sulfur spring clone ZAR7 prokMSA_id:93046 AY341316.1 -salt anaerobic sulfur spring clone ZAR8 1.2.7.2.1.1.2278 OTU 18 seqs prokMSA_id:352 AF095268.1 Methanocorpusculum sinense str. China Z prokMSA_id:353 AF095267.1 Methanocorpusculum labreanum prokMSA_id:356 M59147.1 Methanocorpusculum parvum prokMSA_id:31702 AJ408266.1 equine large intestine clone DL11 prokMSA_id:39103 AB056679.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT28 prokMSA_id:39974 AY057068.1 Methanocorpusculum parvum str. IF9601b prokMSA_id:66890 AJ312018.1 clone SHC-268 prokMSA_id:71599 AF419634.1 hydrothermal sediment clone AF419634 prokMSA_id:75506 AB062302.1 isolate xylophagous cockroach gut clone PA127 prokMSA_id:75579 AB062305.1 isolate xylophagous cockroach gut clone PA123 prokMSA_id:76282 AB062304.1 isolate xylophagous cockroach gut clone ST152 prokMSA_id:76790 AB062301.1 isolate xylophagous cockroach gut clone ST131 prokMSA_id:83370 AY260434.1 Methanocorpusculum sp. str. MSP prokMSA_id:85117 AY260436.1 Methanocorpusculum labreanum str. DSM 4855 prokMSA_id:86427 AY260435.1 Methanocorpusculum parvum str. DSM 3828 prokMSA_id:97068 AY196676.1 Methanocorpusculum bavaricum str. SZSXXZ prokMSA_id:108549 AY570676.1 -temperature biodegraded Canadian oil reservoir clone PL-21A9 prokMSA_id:108553 AY570678.1 -temperature biodegraded Canadian oil reservoir clone PL-23A11 1.2.7.2.2 Methanomicrobiaceae 166 seqs 1.2.7.2.2.1 sf_1 5 seqs 1.2.7.2.2.1.2105 OTU 1 seq prokMSA_id:34486 AJ131275.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL147 1.2.7.2.2.1.2131 OTU 2 seqs prokMSA_id:253 AF015971.2 salt marsh sediment clone 2C25 prokMSA_id:255 AF015992.2 salt marsh sediment clone 2MT8 1.2.7.2.2.1.2171 OTU 1 seq prokMSA_id:26253 AY053471.1 physically with gas hydrate clone AT425_ArD10 1.2.7.2.2.1.2248 OTU 1 seq prokMSA_id:254 AF015978.2 salt marsh sediment clone 2C84 1.2.7.2.2.2 sf_2 6 seqs 1.2.7.2.2.2.2078 OTU 1 seq prokMSA_id:30524 U86455.1 Sampling site Northwest Pacific Ocean California Current 32deg.32.27'N 121deg21.53'W; 3000 m depth; E. coli alignment positions 537 to 1391 clone pN1-2 1.2.7.2.2.2.2102 OTU 5 seqs prokMSA_id:306 AF122002.1 sub-tropical Atlantic Ocean clone DCM875 prokMSA_id:28555 AF223133.1 North Atlantic Ocean at 200m clone AT-200_29 prokMSA_id:45211 AF223142.1 Mediterranean Sea at 450m clone ME-450_38 prokMSA_id:50813 AF290531.1 southern Aegean Sea at 10m depth clone AEGEAN_60 prokMSA_id:84991 AB095139.1 Central Indian Ridge (CIR) deep-sea hydrothermal vent site clone pCIRA-15 1.2.7.2.2.3 sf_3 155 seqs 1.2.7.2.2.3.2084 OTU 1 seq prokMSA_id:300 AF126863.1 South Korea:Lake Soyang clone SYA-133 1.2.7.2.2.3.2089 OTU 1 seq prokMSA_id:303 AF126846.1 South Korea:Lake Soyang clone SYA-45 1.2.7.2.2.3.2093 OTU 1 seq prokMSA_id:312 AF107103.1 Methanoculleus sp. str. MAB1 1.2.7.2.2.3.2094 OTU 1 seq prokMSA_id:314 AF107105.1 Methanoculleus sp. str. MAB3 1.2.7.2.2.3.2121 OTU 1 seq prokMSA_id:18762 AF447154.1 clone TDC-AR4 1.2.7.2.2.3.2161 OTU 16 seqs prokMSA_id:263 AF015983.2 salt marsh sediment clone 2MT120 prokMSA_id:264 AF142976.1 clone ACE1_A prokMSA_id:265 M59131.2 Methanogenium organophilum prokMSA_id:266 AF009219.1 Methanogenium frigidum str. OCM 469 prokMSA_id:24448 AF015969.2 salt marsh sediment clone 2C169 prokMSA_id:26952 AF015968.2 salt marsh sediment clone 2C130 prokMSA_id:31414 AF220337.1 temperature petroleum reservoir clone O23E2 prokMSA_id:49083 AF220338.1 temperature petroleum reservoir clone O23C7 prokMSA_id:72379 AF220336.1 temperature petroleum reservoir clone O23D1 prokMSA_id:72381 AF374279.1 brackish/freshwater estuary; cf. Methanogenium sp. clone EHB156 prokMSA_id:72572 AF374277.1 brackish/freshwater estuary; cf. Methanogenium sp. clone EHB158 prokMSA_id:74196 AF374278.1 brackish/freshwater estuary; cf. Methanogenium sp. clone EHB154 prokMSA_id:78486 AY177813.1 Antarctic sediment clone SB13 prokMSA_id:78517 AY177806.1 Antarctic sediment clone LH14 prokMSA_id:78642 AY177807.1 Antarctic sediment clone LH23 prokMSA_id:78953 AY177815.1 Antarctic sediment clone SB18 1.2.7.2.2.3.2188 OTU 1 seq prokMSA_id:260 U76631.1 Methanoplanus petrolearius 1.2.7.2.2.3.2225 OTU 4 seqs prokMSA_id:328 Y16428.1 Methanofollis liminatans prokMSA_id:329 Y16429.1 Methanofollis liminatans prokMSA_id:22804 AF262035.1 Methanofollis sp. N2F9704 prokMSA_id:96483 AY196677.1 Methanofollis liminatans 1.2.7.2.2.3.2228 OTU 8 seqs prokMSA_id:298 AB008853.1 Methanocalculus pumilus prokMSA_id:299 AF033672.1 Methanocalculus halotolerans prokMSA_id:19259 AF347025.1 Methanocalculus chunghsingensis str. K1F9705b prokMSA_id:41198 AF321115.1 Methanocalculus chunghsingensis str. K1F9705c prokMSA_id:42125 AF172443.2 Methanocalculus taiwanensis str. P2F9704a prokMSA_id:45899 AF411470.1 Methanocalculus halotolerans str. P2F9705; OCM 672 prokMSA_id:74785 AY026256.1 Methanocalculus sp. str. O1F9702c prokMSA_id:83974 AY234332.1 Methanocalculus chunghsingensis str. O1F9704a 1.2.7.2.2.3.2234 OTU 2 seqs prokMSA_id:257 M59142.1 Methanomicrobium mobile prokMSA_id:50770 AB034182.1 rumen clone Hole9 1.2.7.2.2.3.2243 OTU 1 seq prokMSA_id:37655 AF015970.2 salt marsh sediment clone 2C174 1.2.7.2.2.3.2244 OTU 2 seqs prokMSA_id:258 AF142980.1 clone BURTON24_A prokMSA_id:261 AF142979.1 clone ACE4_A 1.2.7.2.2.3.2245 OTU 1 seq prokMSA_id:252 M59143.1 Methanoplanus limicola 1.2.7.2.2.3.2250 OTU 1 seq prokMSA_id:256 Z29435.1 Methanoplanus endosymbiosus str. DSM 3599 1.2.7.2.2.3.2274 OTU 80 seqs prokMSA_id:267 Y16382.1 Methanoculleus palmaeoli prokMSA_id:294 M59134.1 Methanoculleus marisnigri prokMSA_id:295 AF028693.1 Methanoculleus marisnigri prokMSA_id:296 AF157519.1 swine waste pit clone prokMSA_id:304 M59129.1 Methanoculleus thermophilicus prokMSA_id:308 AF095270.1 Methanoculleus olentangyi prokMSA_id:309 AF015979.2 salt marsh sediment clone 2C87 prokMSA_id:310 AF015985.2 salt marsh sediment clone 2MT196 prokMSA_id:311 AF157518.1 swine waste pit clone prokMSA_id:317 AF095269.1 Methanoculleus bourgensis prokMSA_id:16936 AY062220.1 landfill clone GW60-13-38 prokMSA_id:26465 AJ244287.1 molecular isolate stable cellulose-degrading enrichment clone E15-1 prokMSA_id:26720 AB038795.2 Methanoculleus chikugoensis str. MG62 prokMSA_id:28508 AF376797.1 methanogenic upf anaerobic hybrid reactor (MUAHR) clone prokMSA_id:29601 AJ244301.1 molecular isolate stable cellulose-degrading enrichment clone E30-5 prokMSA_id:30915 AY062235.1 landfill clone GW70-20-6 prokMSA_id:33933 AJ244289.1 molecular isolate stable cellulose-degrading enrichment clone E15-3 prokMSA_id:44000 AY062222.1 landfill clone GW60-13-4 prokMSA_id:44094 AY062218.1 landfill clone GW60-13-1 prokMSA_id:44296 AJ244296.1 molecular isolate stable cellulose-degrading enrichment clone E15-10 prokMSA_id:44379 AY062230.1 landfill clone GW70-10-35 prokMSA_id:45011 AY062221.1 landfill clone GW60-13-3 prokMSA_id:48761 AY062225.1 landfill clone GW70-10-10 prokMSA_id:55959 AJ412775.1 clone DERR12 prokMSA_id:58532 AJ493110.1 landfill site clone LK28 prokMSA_id:58533 AJ493107.1 landfill site clone LK49 prokMSA_id:58534 AJ493109.1 landfill site clone LK31 prokMSA_id:58537 AJ493103.1 landfill site clone LK26 prokMSA_id:58538 AJ493104.1 landfill site clone LK50 prokMSA_id:63713 AJ412785.1 clone DERS7 prokMSA_id:63714 AJ412784.1 clone DERS6 prokMSA_id:63723 AJ412782.1 clone DERS4 prokMSA_id:63724 AJ412783.1 clone DERS5 prokMSA_id:63729 AJ412773.1 clone DERR10 prokMSA_id:67141 AB084243.1 solid waste landfill clone LCD prokMSA_id:69299 AJ493099.1 landfill site clone LK16 prokMSA_id:69300 AB065298.1 Methanoculleus bourgensis str. CB1 prokMSA_id:69442 AJ493108.1 landfill site clone LK23 prokMSA_id:69616 AJ493097.1 landfill site clone LK9 prokMSA_id:69714 AJ493095.1 landfill site clone LK13 prokMSA_id:70145 AF531178.1 Methanoculleus submarinus str. Nankai-1 OCM 780T (Oregon Collection Methanogens) prokMSA_id:70246 AJ493102.1 landfill site clone LK14 prokMSA_id:71365 AJ493098.1 landfill site clone LK4 prokMSA_id:73005 AJ493096.1 landfill site clone LK45 prokMSA_id:73658 AJ493093.1 landfill site clone LK15 prokMSA_id:82879 AB092916.1 propionate-degrading methanogenic consortium clone AA01 prokMSA_id:84703 AY231363.1 wastewater clone AR2_8 prokMSA_id:91502 AB065297.1 Methanoculleus thermophilus str. CR-1 prokMSA_id:93802 AY368461.1 methanogenic bioreactor clone CM20 prokMSA_id:98731 AY196674.1 Methanoculleus bourgensis str. MS2 prokMSA_id:100057 AJ576236.1 landfill leachate clone GZK64 prokMSA_id:100657 AB089178.2 Methanoculleus sp. str. IIE1 prokMSA_id:101205 AB175341.1 mesophilic anaerobic BSA digester clone BSA1A-06 prokMSA_id:101360 AB175342.1 mesophilic anaerobic BSA digester clone BSA1A-07 prokMSA_id:101530 AB175343.1 mesophilic anaerobic BSA digester clone BSA1A-08 prokMSA_id:101703 AB175344.1 mesophilic anaerobic BSA digester clone BSA1A-09 prokMSA_id:102023 AB175346.1 mesophilic anaerobic BSA digester clone BSA2A-01 prokMSA_id:102176 AB175347.1 mesophilic anaerobic BSA digester clone BSA2A-02 prokMSA_id:102319 AB175348.1 mesophilic anaerobic BSA digester clone BSA2A-03 prokMSA_id:102338 AB114310.1 thermophilic anaerobic municipal solid waste digester clone MANA02 prokMSA_id:102478 AB175349.1 mesophilic anaerobic BSA digester clone BSA2A-04 prokMSA_id:102708 AJ576205.1 landfill leachate clone GZK1 prokMSA_id:102858 AJ576206.1 landfill leachate clone GZK3 prokMSA_id:103152 AJ576208.1 landfill leachate clone GZK7 prokMSA_id:103398 AJ576222.1 landfill leachate clone GZK33 prokMSA_id:104286 AJ550158.1 Methanoculleus sp. str. dm2 prokMSA_id:104373 AJ576241.1 landfill leachate clone GZK76 prokMSA_id:105830 AB175336.1 mesophilic anaerobic BSA digester clone BSA1A-01 prokMSA_id:105981 AB175337.1 mesophilic anaerobic BSA digester clone BSA1A-02 prokMSA_id:106083 AB175350.1 mesophilic anaerobic BSA digester clone BSA2A-05 prokMSA_id:106133 AB175338.1 mesophilic anaerobic BSA digester clone BSA1A-03 prokMSA_id:106293 AB175339.1 mesophilic anaerobic BSA digester clone BSA1A-04 prokMSA_id:106322 AB114301.1 thermophilic anaerobic municipal solid waste digester clone MAA01 prokMSA_id:106479 AB114302.1 thermophilic anaerobic municipal solid waste digester clone MAA02 prokMSA_id:106793 AB114304.1 thermophilic anaerobic municipal solid waste digester clone MAA04 prokMSA_id:106940 AB114305.1 thermophilic anaerobic municipal solid waste digester clone MAA05 prokMSA_id:107246 AB114307.1 thermophilic anaerobic municipal solid waste digester clone MAA07 prokMSA_id:107394 AB114308.1 thermophilic anaerobic municipal solid waste digester clone MAA08 prokMSA_id:108530 AY570665.1 -temperature biodegraded Canadian oil reservoir clone PL-9A5 prokMSA_id:108784 AJ862839.1 Methanoculleus thermophilus str. DSM 2832 1.2.7.2.2.3.2286 OTU 34 seqs prokMSA_id:269 AF050617.1 contaminated aquifer clone WCHD3-07 prokMSA_id:16528 AB056013.1 AM-10 clone prokMSA_id:27240 AB056048.1 OS-23 clone prokMSA_id:28545 AF424766.1 municipal wastewater sludge clone 19-1 prokMSA_id:29292 AF473903.1 agricultural soil clone r-5_06C prokMSA_id:30469 AB056041.1 OS-16 clone prokMSA_id:32200 AB056033.1 OS-8 clone prokMSA_id:37119 AF424773.1 municipal wastewater sludge clone 57-1 prokMSA_id:39739 AB056038.1 OS-13 clone prokMSA_id:50440 AF423187.1 Toluene-degrading methanogenic consortium clone M1 consortium prokMSA_id:55255 AF509447.1 Methanoculleus palmolei prokMSA_id:56516 AF509439.1 Methanoculleus palmolei prokMSA_id:62887 AB077222.1 oil-contaminated groundwater clone KuA12 prokMSA_id:66206 AF509456.1 Methanocorpusculum bavaricum prokMSA_id:66210 AF509457.1 Methanocorpusculum bavaricum prokMSA_id:66213 AF509453.1 Methanoculleus palmolei prokMSA_id:66215 AF509454.1 Methanoculleus palmolei prokMSA_id:66220 AF509444.1 Methanoculleus palmolei prokMSA_id:66225 AF509437.1 Methanospirillum hungatei prokMSA_id:66889 AJ312019.1 clone SHC-88 prokMSA_id:77921 AJ459899.1 bog peat clone AMC 1 M21 prokMSA_id:81190 AJ548953.1 oligotrophic fen clone FenH- prokMSA_id:81349 AJ548949.1 oligotrophic fen clone FenW- prokMSA_id:81531 AJ548950.1 oligotrophic fen clone FenR- prokMSA_id:81538 AJ548952.1 oligotrophic fen clone FenK- prokMSA_id:81750 AJ548947.1 oligotrophic fen clone FenI- prokMSA_id:81899 AJ548946.1 oligotrophic fen clone FenZ- prokMSA_id:82322 AJ548948.1 oligotrophic fen clone FenH1- prokMSA_id:84116 AY092163.1 clone AF6 prokMSA_id:85604 AY251027.1 freshwater sediment clone 15ar18 prokMSA_id:85882 AY092165.1 clone AF7 prokMSA_id:90496 AY294415.1 petroleum hydrocarbon-contaminated aquifer clone Stme2 prokMSA_id:90666 AY294409.1 petroleum hydrocarbon-contaminated aquifer clone Stme4 prokMSA_id:107512 AY667274.1 TCE-dechlorinating groundwater clone TANA6 1.2.7.2.3 Methanospirillaceae 11 seqs 1.2.7.2.3.1 sf_1 11 seqs 1.2.7.2.3.1.2103 OTU 1 seq prokMSA_id:338 AF056366.1 sediment Lake Soyang at approximate depth 90 meters clone 1.2.7.2.3.1.2146 OTU 1 seq prokMSA_id:345 AF126847.1 South Korea:Lake Soyang clone SYA-50 1.2.7.2.3.1.2168 OTU 3 seqs prokMSA_id:340 AB009823.1 Nasutitermes takasagoensis symbiont MNt1 prokMSA_id:341 AB009824.1 Nasutitermes takasagoensis symbiont MNt2 prokMSA_id:342 AB009825.1 Pericapritermes nitobei symbiont MPn1 1.2.7.2.3.1.2172 OTU 5 seqs prokMSA_id:336 M60880.1 Methanospirillum hungatei prokMSA_id:343 AJ133792.1 hydrocarbon enrichment clone A2 prokMSA_id:43804 AJ288312.1 prokMSA_id:97855 AY196683.1 Methanospirillum hungatei prokMSA_id:103104 AJ576220.1 landfill leachate clone GZK26 1.2.7.2.3.1.2232 OTU 1 seq prokMSA_id:344 AF126852.1 South Korea:Lake Soyang clone SYA-77 1.2.7.3 Methanosarcinales 163 seqs 1.2.7.3.1 Methanosaetaceae 31 seqs 1.2.7.3.1.1 sf_4 5 seqs 1.2.7.3.1.1.2107 OTU 5 seqs prokMSA_id:537 AJ227919.1 prokMSA_id:546 Y18069.1 archeobacteria Clone clone EtOH6 prokMSA_id:573 AJ227931.1 prokMSA_id:37876 Y18066.1 archeobacteria Clone clone EtOH2 prokMSA_id:41805 AF225582.1 clone AS00-12 1.2.7.3.1.2 sf_6 26 seqs 1.2.7.3.1.2.2068 OTU 1 seq prokMSA_id:23885 AJ244293.1 molecular isolate stable cellulose-degrading enrichment clone E15-7 1.2.7.3.1.2.2074 OTU 1 seq prokMSA_id:78578 AY175400.1 northern peatland clone MB-12 1.2.7.3.1.2.2079 OTU 1 seq prokMSA_id:72917 AF220306.1 temperature petroleum reservoir clone O23F7 1.2.7.3.1.2.2085 OTU 1 seq prokMSA_id:20919 AF225667.1 clone AS17-04 1.2.7.3.1.2.2129 OTU 9 seqs prokMSA_id:538 AJ009508.1 TCB bioreactor clone SJC-11b prokMSA_id:19676 AF229774.1 terephthalate-degrading consortium clone TA01 prokMSA_id:49668 AF229777.1 terephthalate-degrading consortium clone TA04 prokMSA_id:62894 AB077211.1 oil-contaminated groundwater clone KuA1 prokMSA_id:66894 AJ312015.1 DCP-dechlorinating consortium clone SHB-23 prokMSA_id:104424 AY692056.1 UASB reactor clone M6 prokMSA_id:106396 AB175352.1 mesophilic anaerobic BSA digester clone BSA2A-07 prokMSA_id:108441 AY586394.1 fatty acid-degrading consortium clone FA-PA5 prokMSA_id:108558 AY570685.1 -temperature biodegraded Canadian oil reservoir clone PL-39A4 1.2.7.3.1.2.2130 OTU 5 seqs prokMSA_id:532 AF050611.1 contaminated aquifer clone WCHD3-03 prokMSA_id:539 AJ009509.1 TCB bioreactor clone SJC-125a prokMSA_id:25452 AF424772.1 municipal wastewater sludge clone 120A-4 prokMSA_id:32447 AF424767.1 municipal wastewater sludge clone 61-2 prokMSA_id:86454 AY251025.1 freshwater sediment clone 15ar14 1.2.7.3.1.2.2140 OTU 2 seqs prokMSA_id:27475 AJ133791.1 hydrocarbon enrichment clone A1 prokMSA_id:104212 AJ576240.1 landfill leachate clone GZK75 1.2.7.3.1.2.2153 OTU 3 seqs prokMSA_id:22948 AF423188.1 Toluene-degrading methanogenic consortium clone M2 consortium prokMSA_id:67140 AB084242.1 solid waste landfill clone LCC prokMSA_id:108521 AY570656.1 -temperature biodegraded Canadian oil reservoir clone PL-35A3 1.2.7.3.1.2.2155 OTU 1 seq prokMSA_id:549 Y18086.1 archeobacteria Clone clone Rot10 1.2.7.3.1.2.2156 OTU 1 seq prokMSA_id:44079 AY063672.1 clone RS0-17 1.2.7.3.1.2.2157 OTU 1 seq prokMSA_id:560 AJ236501.1 clone S15-20 1.2.7.3.2 Methanosarcinaceae 80 seqs 1.2.7.3.2.1 sf_3 73 seqs 1.2.7.3.2.1.2072 OTU 1 seq prokMSA_id:470 AJ236538.1 clone S30-29 1.2.7.3.2.1.2095 OTU 1 seq prokMSA_id:422 Z29439.1 Plagiopyla frontata symbiont 1.2.7.3.2.1.2101 OTU 1 seq prokMSA_id:475 AJ238648.1 Methanosarcina baltica str. GS1- 1.2.7.3.2.1.2125 OTU 2 seqs prokMSA_id:20184 AF293016.1 Green Bay ferromanganous micronodule clone ARB5 prokMSA_id:74581 AF293017.1 Green Bay ferromanganous micronodule clone ARC3 1.2.7.3.2.1.2127 OTU 7 seqs prokMSA_id:472 U89773.1 Methanosarcina siciliae prokMSA_id:490 AJ012094.1 Methanosarcina barkeri str. DSM 800 (T) OCM 38 prokMSA_id:491 AF028692.1 Methanosarcina barkeri str. Sar prokMSA_id:498 U81777.2 anaerobic digestor clone vadinCA25 prokMSA_id:514 AJ002476.1 Methanosarcina barkeri prokMSA_id:67692 AE010754.1 Methanosarcina acetivorans str. C2A prokMSA_id:67693 AE011184.1 Methanosarcina acetivorans str. C2A 1.2.7.3.2.1.2143 OTU 6 seqs prokMSA_id:380 U81776.2 anaerobic digestor clone vadinDA05 prokMSA_id:476 AF020341.1 Methanosarcina sp. str. FR prokMSA_id:67139 AB084244.1 solid waste landfill clone LCE prokMSA_id:83898 AY260431.1 Methanosarcina lacustris str. MS prokMSA_id:85506 AY260430.1 Methanosarcina lacustris str. MM prokMSA_id:88792 AF519802.1 Methanosarcina sp. str. JL01 1.2.7.3.2.1.2223 OTU 7 seqs prokMSA_id:373 AJ012095.1 Methanosarcina mazei str. DSM 2053(T) OCM 26 prokMSA_id:374 AF028691.1 Methanosarcina mazei prokMSA_id:439 X69874.1 Methanosarcina frisius prokMSA_id:18470 AF411467.1 Methanosarcina mazei str. O1M9704b; OCM 670 prokMSA_id:18827 AF411469.1 Methanosarcina mazei str. O1M9701; OCM 748 prokMSA_id:30939 AB065295.1 Methanosarcina mazei str. TMA prokMSA_id:84434 AY260432.1 Methanosarcina mazei str. MT 1.2.7.3.2.1.2252 OTU 1 seq prokMSA_id:403 AJ012742.1 Methanosarcina semesii 1.2.7.3.2.1.2269 OTU 26 seqs prokMSA_id:473 AB009822.1 Odontotermes formosanus symbiont MOf1 prokMSA_id:474 AB009826.1 Pericapritermes nitobei symbiont MPn4 prokMSA_id:516 AJ238002.1 Methanimicrococcus blatticola prokMSA_id:16838 AF293508.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-10 prokMSA_id:18310 AF293513.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-15 prokMSA_id:18593 AF293533.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-26 prokMSA_id:18969 AF293518.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-6 prokMSA_id:20977 AF293569.1 termite gut homogenate proctodeal segment P3 clone P3-Ar-24 prokMSA_id:21448 AF293516.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-4 prokMSA_id:21910 AF293526.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-17 prokMSA_id:23609 AF293507.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-1 prokMSA_id:32888 AF293515.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-3 prokMSA_id:33973 AF293535.1 euryarchaeote clone P1-Ar-28 prokMSA_id:35091 AF293527.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-19 prokMSA_id:35561 AF293512.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-14 prokMSA_id:36045 AF293525.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-16 prokMSA_id:39139 AF293519.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-7 prokMSA_id:40656 AF293532.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-25 prokMSA_id:44162 AF293514.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-2 prokMSA_id:45534 AF293511.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-13 prokMSA_id:46877 AF293517.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-5 prokMSA_id:48239 AF293534.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-27 prokMSA_id:50358 AF293520.1 termite gut homogenate proctodeal segment P1 clone P1-Ar-8 prokMSA_id:50674 AF293490.1 termite gut homogenate proctodeal segment P4b clone P4b-Ar-18 prokMSA_id:51355 AF293537.1 euryarchaeote clone P1-Ar-30 prokMSA_id:95892 AY196680.1 Methanimicrococcus blatticola str. PAT 1.2.7.3.2.1.2291 OTU 14 seqs prokMSA_id:426 X65537.1 Methanococcoides burtonii prokMSA_id:431 AF120163.1 Methanomethylovorans hollandica prokMSA_id:40857 AF354132.1 marine sediment clone SB-24a1C2 prokMSA_id:44725 Y16946.1 Methanococcoides sp. str. NaT1 prokMSA_id:48567 AJ276437.1 Methanomethylovorans victoriae str. TM prokMSA_id:62890 AB077216.1 oil-contaminated groundwater clone KuA6 prokMSA_id:66897 AJ312013.1 DCP-dechlorinating consortium clone SHB-143 prokMSA_id:70903 AF354136.1 marine sediment clone Eel-36a2H11 prokMSA_id:83403 AB095121.1 Central Indian Ridge (CIR) deep-sea hydrothermal vent site clone pCIRA-K prokMSA_id:83794 AY260433.1 Methanomethylovorans hollandica str. ZB prokMSA_id:100220 AJ579330.1 marine sediment clone HMMVBeg-32 prokMSA_id:105505 AJ579329.1 marine sediment clone HMMVBeg-27 prokMSA_id:109239 AJ704652.1 marine sediment clone HMMVBeg-27 prokMSA_id:109240 AJ704653.1 marine sediment clone HMMVBeg-32 1.2.7.3.2.1.2299 OTU 7 seqs prokMSA_id:456 AF029209.1 bovine rumen fluid clone ARC46 prokMSA_id:493 AF029206.1 bovine rumen fluid clone ARC9 prokMSA_id:494 AF029207.1 bovine rumen fluid clone ARC31 prokMSA_id:495 AF029208.1 bovine rumen fluid clone ARC45 prokMSA_id:496 AF029210.1 bovine rumen fluid clone ARC63 prokMSA_id:497 AF029211.1 bovine rumen fluid clone ARC64 prokMSA_id:36837 AB034189.1 rumen clone 2 1.2.7.3.2.2 sf_4 1 seq 1.2.7.3.2.2.2159 OTU 1 seq prokMSA_id:443 AJ236508.1 clone S15-27 1.2.7.3.2.3 sf_5 4 seqs 1.2.7.3.2.3.2067 OTU 1 seq prokMSA_id:35246 AF199376.1 anoxic hypolimnion at 3.25m isolate str. DJ3.25-13 1.2.7.3.2.3.2133 OTU 1 seq prokMSA_id:427 AF142832.1 clone BURTON-12 1.2.7.3.2.3.2160 OTU 1 seq prokMSA_id:45908 AF199374.1 anoxic hypolimnion at 4.75m isolate str. D4.75-4 1.2.7.3.2.3.2275 OTU 1 seq prokMSA_id:42447 AF015981.2 salt marsh sediment clone 2MT1 1.2.7.3.2.4 sf_6 1 seq 1.2.7.3.2.4.2099 OTU 1 seq prokMSA_id:20092 AJ310457.1 1.2.7.3.2.5 sf_7 1 seq 1.2.7.3.2.5.2158 OTU 1 seq prokMSA_id:442 AF118658.1 anoxic sediment clone pBRKC129 1.2.7.3.3 Unclassified 52 seqs 1.2.7.3.3.1 sf_1 52 seqs 1.2.7.3.3.1.2201 OTU 35 seqs prokMSA_id:444 AF134384.1 anaerobic methane rich marine sediments clone TA1a4 prokMSA_id:20168 AY053472.1 physically with gas hydrate clone At425_ArD2 prokMSA_id:21515 AY053474.1 physically with gas hydrate clone AT425_ArE12 prokMSA_id:35354 AF419644.1 hydrothermal sediment clone AF419644 prokMSA_id:41219 AF354142.1 marine sediment clone SB-17a1D3 prokMSA_id:59039 AJ294899.1 marine sediment depth 5-7 cm clone 19b-31 prokMSA_id:59046 AJ294893.1 marine sediment depth 10-12 cm clone 19c-45 prokMSA_id:59047 AJ294894.1 marine sediment depth 10-12 cm clone 19c-49 prokMSA_id:59048 AJ294892.1 marine sediment depth 10-12 cm clone 19c-36 prokMSA_id:59068 AJ294872.1 marine sediment depth 5-7 cm clone 19b-46 prokMSA_id:59070 AJ294868.1 marine sediment depth 5-7 cm clone 19b-38 prokMSA_id:59077 AJ294861.1 marine sediment depth 5-7 cm clone 19b-24 prokMSA_id:59079 AJ294860.1 marine sediment depth 5-7 cm clone 19b-23 prokMSA_id:59083 AJ294855.1 marine sediment depth 5-7 cm clone 19b-7 prokMSA_id:69806 AF419647.1 hydrothermal sediment clone AF419647 prokMSA_id:70991 AF354129.1 marine sediment clone Eel-36a2A1 prokMSA_id:71136 AF354131.1 marine sediment clone SB-24A1A12 prokMSA_id:72394 AF354141.1 marine sediment clone SB-17a1B11 prokMSA_id:72945 AF354139.1 marine methane seep clone 922 prokMSA_id:73069 AF419635.1 hydrothermal sediment clone AF419635 prokMSA_id:74281 AF354133.1 marine sediment clone Eel-36a2A5 prokMSA_id:74364 AF419638.1 hydrothermal sediment clone AF419638 prokMSA_id:92926 AY345181.1 deep-sea sediment clone 626-27 prokMSA_id:93178 AY323218.1 Monterey Bay clone AMOS4A_4113_B05 prokMSA_id:94105 AY323223.1 Monterey Bay clone AMOS4A_4113_H05 prokMSA_id:95246 AY211695.1 Gulf Mexico seafloor sediment clone GoM GC234 021R prokMSA_id:95425 AY211701.1 Gulf Mexico seafloor sediment clone GoM GC234 520R prokMSA_id:97124 AY211704.1 Gulf Mexico seafloor sediment clone GoM GC234 607R prokMSA_id:98308 AY211694.1 Gulf Mexico seafloor sediment clone GoM GC234 019R prokMSA_id:98490 AY211685.1 Gulf Mexico seafloor sediment clone GoM GC185 503R prokMSA_id:98982 AJ578118.1 marine sediments above gas hydrate clone HydBeg22 prokMSA_id:101452 AY714826.1 Eel River sediment clone GZfos18C8 prokMSA_id:101882 AY714841.1 Eel River sediment clone GZfos26E7 prokMSA_id:106736 AJ578098.1 marine sediments above gas hydrate clone HydBeg05 prokMSA_id:107496 AJ578115.1 marine sediments above gas hydrate clone HydBeg125 1.2.7.3.3.1.2215 OTU 2 seqs prokMSA_id:68322 AF356643.1 Guaymas Basin clone G72_C12 prokMSA_id:68326 AF356639.1 Guaymas Basin clone G72_C1 1.2.7.3.3.1.2246 OTU 4 seqs prokMSA_id:36504 AF354140.1 marine sediment clone Eel-36a2B9 prokMSA_id:69820 AF354128.1 marine sediment clone Eel-36a2A4 prokMSA_id:72991 AF354135.1 marine methane seep clone 1387 prokMSA_id:73643 AF354138.1 marine sediment clone SB-24a1C12 1.2.7.3.3.1.2287 OTU 11 seqs prokMSA_id:437 AF015991.2 salt marsh sediment clone 2MT7 prokMSA_id:438 AF134393.1 anaerobic methane rich marine sediments clone BA2H11fin prokMSA_id:69934 AF354130.1 marine sediment clone SB-24a1B11 prokMSA_id:73952 AF354134.1 marine sediment clone SB-24a1F10 prokMSA_id:92823 AY345183.1 deep-sea sediment clone 626-29 prokMSA_id:93364 AY324379.1 Blake Ridge PC26 clone BR34ARC_C05 prokMSA_id:95517 AY211687.1 Gulf Mexico seafloor sediment clone GoM GC185 517R prokMSA_id:101735 AJ578088.1 marine sediments above gas hydrate clone HydCal59 prokMSA_id:103203 AJ578122.1 microbial mat clone BS-K-410 prokMSA_id:104072 AJ578128.1 microbial mat clone BS-K-H6 prokMSA_id:107642 AJ578116.1 marine sediments above gas hydrate clone HydBeg134 1.2.7.4 Unclassified 9 seqs 1.2.7.4.1 Unclassified 9 seqs 1.2.7.4.1.1 sf_1 7 seqs 1.2.7.4.1.1.2206 OTU 5 seqs prokMSA_id:17811 AJ347782.1 brine-seawater interface clone ST-12K11A group prokMSA_id:24075 AJ347779.1 brine-seawater interface clone ST-3K26A group prokMSA_id:32440 AJ347783.1 brine-seawater interface clone ST-12K28A group prokMSA_id:46891 AJ347781.1 brine-seawater interface Shaban Deep Red Sea clone ST-3K65A prokMSA_id:52466 AJ347780.1 brine-seawater interface clone ST-3K1A group 1.2.7.4.1.1.2255 OTU 2 seqs prokMSA_id:33106 AJ347784.1 brine-seawater interface clone ST-12K10A group prokMSA_id:41854 AJ347785.1 brine-seawater interface clone ST-3K54A group 1.2.7.4.1.2 sf_2 1 seq 1.2.7.4.1.2.2273 OTU 1 seq prokMSA_id:554 AJ131277.1 surface water freshwater Finnish forest lake Valkea Kotinen clone VAL33-1 1.2.7.4.1.3 sf_3 1 seq 1.2.7.4.1.3.2185 OTU 1 seq prokMSA_id:69892 AF134388.1 anaerobic methane rich marine sediments clone TA1c9 1.2.7.5 WSA1 3 seqs 1.2.7.5.1 Unclassified 3 seqs 1.2.7.5.1.1 sf_1 3 seqs 1.2.7.5.1.1.2177 OTU 2 seqs prokMSA_id:533 AF050620.1 contaminated aquifer clone WCHD3-34 prokMSA_id:41595 AJ308972.1 archaeal clone- obtained bulk soil clone AS04-16 1.2.7.5.1.1.2296 OTU 1 seq prokMSA_id:62889 AB077217.1 oil-contaminated groundwater clone KuA7 1.2.8 Methanopyri 3 seqs 1.2.8.1 Methanopyrales 3 seqs 1.2.8.1.1 Methanopyraceae 3 seqs 1.2.8.1.1.1 sf_1 3 seqs 1.2.8.1.1.1.2114 OTU 3 seqs prokMSA_id:822 M59932.1 Methanopyrus kandleri str. av19 prokMSA_id:62897 AE010349.1 Methanopyrus kandleri str. AV19 prokMSA_id:64372 NC_003551.1 Methanopyrus kandleri AV19 1.2.9 pMC1 3 seqs 1.2.9.1 Unclassified 3 seqs 1.2.9.1.1 Unclassified 3 seqs 1.2.9.1.1.1 sf_1 3 seqs 1.2.9.1.1.1.2235 OTU 1 seq prokMSA_id:249 AB019754.1 hydrothermal vent clone pMC1A4 1.2.9.1.1.1.2292 OTU 2 seqs prokMSA_id:56753 AY166001.1 black smoker chimney clone FZ2aA62 prokMSA_id:56767 AY165992.1 black smoker chimney clone FZ1aA168 1.3 Korarchaeota 9 seqs 1.3.1 Unclassified 9 seqs 1.3.1.1 Unclassified 9 seqs 1.3.1.1.1 Unclassified 9 seqs 1.3.1.1.1.1 sf_169 5 seqs 1.3.1.1.1.1.2656 OTU 5 seqs prokMSA_id:884 AB007304.1 hot water habitat clone pOWA19 prokMSA_id:885 AB007305.1 hot water habitat clone pOWA54 prokMSA_id:886 AB007306.1 hot water habitat clone pUWA43 prokMSA_id:63629 AF526986.1 East-Pacific Rise deep-sea hydrothermal vent clone pEPR153 prokMSA_id:70637 AF419639.1 hydrothermal sediment clone AF419639 1.3.1.1.1.2 sf_1 4 seqs 1.3.1.1.1.2.2562 OTU 2 seqs prokMSA_id:1173 L25303.1 hot spring clone pJP78 prokMSA_id:49873 AF255604.1 hot spring clone SRI-306 1.3.1.1.1.2.2569 OTU 2 seqs prokMSA_id:1172 L25852.1 hot spring clone pJP27 prokMSA_id:51224 AF176347.1 hot spring clone pBA5 1.4 Unclassified 2 seqs 1.4.1 Unclassified 2 seqs 1.4.1.1 Unclassified 2 seqs 1.4.1.1.1 Unclassified 2 seqs 1.4.1.1.1.1 sf_1 1 seq 1.4.1.1.1.1.2648 OTU 1 seq prokMSA_id:824 L25300.1 hot spring clone pJP33 1.4.1.1.1.2 sf_2 1 seq 1.4.1.1.1.2.4710 OTU 1 seq prokMSA_id:30562 AF424502.1 planctomycete clone MERTZ_21CM_399 1.5 YNPFFA 6 seqs 1.5.1 YNPFFA 6 seqs 1.5.1.1 Unclassified 6 seqs 1.5.1.1.1 Unclassified 6 seqs 1.5.1.1.1.1 sf_1 6 seqs 1.5.1.1.1.1.2568 OTU 6 seqs prokMSA_id:34207 AF391990.1 thermal soil clone YNPFFA4 prokMSA_id:36629 AF391992.1 thermal soil clone YNPFFA85 prokMSA_id:37402 AF391989.1 thermal soil clone YNPFFA1 prokMSA_id:41999 AF391991.1 thermal soil clone YNPFFA23 prokMSA_id:45996 AF391993.1 thermal soil clone YNPFFA108 prokMSA_id:63276 AF523942.1 coal effluent wetland clone ARCP135 2 Bacteria 29086 seqs 2.1 1959 group 1 seq 2.1.1 Unclassified 1 seq 2.1.1.1 Unclassified 1 seq 2.1.1.1.1 Unclassified 1 seq 2.1.1.1.1.1 sf_1 1 seq 2.1.1.1.1.1.9869 OTU 1 seq prokMSA_id:22125 AF269002.1 lab-scale sludge clone SBR1093 2.10 Chlorobi 71 seqs 2.10.1 Chlorobia 50 seqs 2.10.1.1 Chlorobiales 50 seqs 2.10.1.1.1 Chlorobiaceae 41 seqs 2.10.1.1.1.1 sf_1 41 seqs 2.10.1.1.1.1.1032 OTU 8 seqs prokMSA_id:2674 M62791.1 Prosthecochloris vibrioformis prokMSA_id:19433 AJ291827.1 Prosthecochloris vibrioformis str. CHP 3402 prokMSA_id:21271 AY038426.1 green sulfur clone CD5B9 prokMSA_id:39385 AJ291826.1 Prosthecochloris aestuarii str. CHP 3401 prokMSA_id:40271 AJ291828.1 Pelodictyon phaeum prokMSA_id:60379 AF513460.1 Chlorobiaceae isolate str. LA53 prokMSA_id:63916 AJ290835.2 Prosthecochloris aestuarii str. 2K prokMSA_id:63920 AJ290833.1 Chlorobium phaeovibrioides str. DSM 1678 2.10.1.1.1.1.1039 OTU 2 seqs prokMSA_id:2692 Y08102.1 Chlorobaculum thiosulfatophilum prokMSA_id:63746 AJ290825.1 Chlorobaculum thiosulfatiphilum str. 1430 2.10.1.1.1.1.262 OTU 19 seqs prokMSA_id:2670 Y08108.1 Chlorobium clathratiforme prokMSA_id:2675 Y07837.1 Prosthecochloris aestuarii prokMSA_id:2676 M31769.1 Chlorobaculum sp.8327 prokMSA_id:2681 Y10649.1 Chlorobaculum chlorovibrioides prokMSA_id:2687 Y10642.2 Chlorobaculum limnaeum prokMSA_id:2689 Y10644.2 Chlorobaculum limnaeum prokMSA_id:2690 Y10646.2 Chlorobaculum limnaeum prokMSA_id:2694 Y08103.1 Prosthecochloris vibrioformis str. 6132 prokMSA_id:2695 Y08107.1 Chlorobium luteolum prokMSA_id:18641 Y18253.1 Chlorobium ferrooxidans prokMSA_id:64302 AE012793.1 Chlorobium tepidum str. TLS prokMSA_id:71554 AJ290830.2 Chlorobium vibrioforme f. thiosulfatophilum str. NCIB 8346 prokMSA_id:102580 AJ428429.1 beach mud clone K-500 prokMSA_id:103776 AY693833.1 anaerobic sludge clone EUB42 prokMSA_id:106349 AJ428431.1 saltmarsh clone K-706 prokMSA_id:106822 AJ428434.1 Salt lake mud clone K-974 prokMSA_id:111790 AJ299413.1 Chlorobaculum limnaeum prokMSA_id:112366 AE012963.1 Chlorobium tepidum str. TLS prokMSA_id:113964 AJ888464.1 Chlorobium gokarna str. 4GSB 2.10.1.1.1.1.503 OTU 1 seq prokMSA_id:2680 AF170103.1 Chloroherpeton thalassium 2.10.1.1.1.1.859 OTU 9 seqs prokMSA_id:2673 Y08105.1 Chlorobium phaeovibrioides prokMSA_id:63878 AJ290829.1 Chlorobium vibrioforme f. thiosulfatophilum str. DSM 265 prokMSA_id:63917 AJ290834.1 Chlorobium phaeovibrioides str. DSM 270 prokMSA_id:63925 AJ290828.2 Prosthecochloris vibrioformis str. DSM 261 prokMSA_id:73247 AJ290824.1 Chlorobium limicola str. DSM246 prokMSA_id:73772 AJ290826.1 Chlorobaculum thiosulfatiphilum str. 1630 prokMSA_id:74116 AJ290827.1 Chlorobaculum thiosulfatiphilum str. 9330 prokMSA_id:102016 AJ831746.1 chemocline clone 366 prokMSA_id:106233 AJ831751.1 chemocline clone 810 2.10.1.1.1.1.906 OTU 1 seq prokMSA_id:63922 AJ290831.2 Chlorobaculum limnaeum str. DSM 1677 2.10.1.1.1.1.995 OTU 1 seq prokMSA_id:69274 AB054671.1 Chlorobaculum sp.M1 2.10.1.1.2 Unclassified 9 seqs 2.10.1.1.2.1 sf_1 9 seqs 2.10.1.1.2.1.341 OTU 1 seq prokMSA_id:51942 AF445704.1 travertine hot spring clone SM1H06 2.10.1.1.2.1.369 OTU 3 seqs prokMSA_id:38651 AF445706.1 travertine hot spring clone SM2A03 prokMSA_id:43107 AF345919.1 USA: Wyoming Yellowstone Nat. Park Sentinal Meadows clone sentinal_7 prokMSA_id:74839 AF445663.1 travertine hot spring clone SM1C06 2.10.1.1.2.1.755 OTU 5 seqs prokMSA_id:19434 AF445653.1 travertine hot spring clone SM1B03 prokMSA_id:28620 AF445652.1 travertine hot spring clone SM1B02 prokMSA_id:34775 AF445662.1 travertine hot spring clone SM1C05 prokMSA_id:39737 AF445732.1 travertine hot spring clone SM2F10 prokMSA_id:48102 AF445651.1 travertine hot spring clone SM1B01 2.10.2 Unclassified 21 seqs 2.10.2.1 Unclassified 21 seqs 2.10.2.1.1 Unclassified 21 seqs 2.10.2.1.1.1 sf_1 5 seqs 2.10.2.1.1.1.5272 OTU 1 seq prokMSA_id:2651 AF027009.1 hot spring clone OPB56 2.10.2.1.1.1.5848 OTU 2 seqs prokMSA_id:41587 AF445709.1 travertine hot spring clone SM2A12 prokMSA_id:47830 AF445728.1 travertine hot spring clone SM2F06 2.10.2.1.1.1.5928 OTU 1 seq prokMSA_id:57444 AJ441242.1 Paralvinella palmiformis mucus secretions clone P. palm 12 bacterium 2.10.2.1.1.1.6131 OTU 1 seq prokMSA_id:49950 AF402977.1 hot spring clone bacteriap24 2.10.2.1.1.2 sf_3 1 seq 2.10.2.1.1.2.1027 OTU 1 seq prokMSA_id:30516 AF445657.1 travertine hot spring clone SM1B09 2.10.2.1.1.3 sf_6 2 seqs 2.10.2.1.1.3.5294 OTU 2 seqs prokMSA_id:36507 AJ296575.1 uranium mining mill tailing clone GR-296.II.11 GR-296.II.11 prokMSA_id:83562 AY221073.1 Mammoth cave clone CCM9b 2.10.2.1.1.4 sf_8 12 seqs 2.10.2.1.1.4.295 OTU 1 seq prokMSA_id:2677 AJ009458.1 chlorobenzene-degrading consortium clone SJA-28 2.10.2.1.1.4.344 OTU 1 seq prokMSA_id:62569 AJ504563.1 sewage sludge clone 2.10.2.1.1.4.425 OTU 1 seq prokMSA_id:51829 AF314426.1 aerobic sludge clone PHOS-HC15 2.10.2.1.1.4.5287 OTU 1 seq prokMSA_id:26494 AJ229196.1 anoxic soil clone BSV40 2.10.2.1.1.4.549 OTU 1 seq prokMSA_id:60815 AY118151.1 benzene-degrading nitrate-reducing consortium clone Cart-N2 bacterium 2.10.2.1.1.4.5753 OTU 2 seqs prokMSA_id:2654 AF027011.1 green sulfur clone OPS77 prokMSA_id:46550 AF445702.1 green sulfur clone SM1H02 2.10.2.1.1.4.5822 OTU 3 seqs prokMSA_id:79504 AB099985.1 inactive deep-sea hydrothermal vent chimneys clone IheB3-7 prokMSA_id:98997 AJ428454.1 Saltmarsh mud clone K-790 prokMSA_id:107516 AJ428451.1 Beach mud clone K-249 2.10.2.1.1.4.6053 OTU 1 seq prokMSA_id:66901 AJ306807.1 DCP-dechlorinating consortium clone SHA-83 2.10.2.1.1.4.636 OTU 1 seq prokMSA_id:60814 AY118152.1 benzene-degrading nitrate-reducing consortium clone Cart-N3 bacterium 2.10.2.1.1.5 sf_9 1 seq 2.10.2.1.1.5.6146 OTU 1 seq prokMSA_id:25315 AF234699.1 sludge clone A12b 2.11 Chloroflexi 309 seqs 2.11.1 Anaerolineae 141 seqs 2.11.1.1 Chloroflexi-1a 90 seqs 2.11.1.1.1 Unclassified 90 seqs 2.11.1.1.1.1 sf_1 90 seqs 2.11.1.1.1.1.106 OTU 1 seq prokMSA_id:66907 AJ306798.1 DCP-dechlorinating consortium clone SHD-231 2.11.1.1.1.1.158 OTU 1 seq prokMSA_id:65477 AJ278172.2 anaerobic bioreactor clone SHD-43 2.11.1.1.1.1.159 OTU 1 seq prokMSA_id:65479 AJ278169.1 anaerobic bioreactor clone SHD-235 2.11.1.1.1.1.162 OTU 2 seqs prokMSA_id:2744 AJ009468.1 chlorobenzene-degrading consortium clone SJA-58 prokMSA_id:84512 AB109439.1 mesophilic UASB granular sludge isolate str. KIBI-1 bacterium 2.11.1.1.1.1.166 OTU 1 seq prokMSA_id:69761 AF419689.1 hydrothermal vent sediment clone C1_B004 2.11.1.1.1.1.174 OTU 1 seq prokMSA_id:44630 AB046413.1 Anaerolinea thermophila 2.11.1.1.1.1.2325 OTU 1 seq prokMSA_id:13740 AF154084.1 hydrocarbon seep clone BPC110 2.11.1.1.1.1.2369 OTU 2 seqs prokMSA_id:13738 AF027043.1 hot spring clone OPB9 prokMSA_id:13739 AF027044.1 hot spring clone OPB34 2.11.1.1.1.1.237 OTU 6 seqs prokMSA_id:1299 Z94009.1 sludge clone T78 prokMSA_id:1300 AF050570.1 contaminated aquifer clone WCHB1-57 prokMSA_id:2738 AJ009492.1 chlorobenzene-degrading consortium clone SJA-131 prokMSA_id:34771 AF323767.2 benzoate-degrading consortium clone BA046 prokMSA_id:48579 AF423184.1 Toluene-degrading methanogenic consortium clone Eub 4 consortium prokMSA_id:49666 AJ249111.1 DCP-dechlorinating consortium clone SHA-53 2.11.1.1.1.1.239 OTU 2 seqs prokMSA_id:66909 AJ306796.1 DCP-dechlorinating consortium clone SHD-190 prokMSA_id:66946 AJ306744.1 DCP-dechlorinating consortium clone SHA-27 2.11.1.1.1.1.2450 OTU 1 seq prokMSA_id:75029 AJ519641.1 uranium mill tailings soil clone Sh765B-TzT/AG-5 2.11.1.1.1.1.25 OTU 1 seq prokMSA_id:72208 AF419695.1 hydrothermal vent sediment clone C1_B034 2.11.1.1.1.1.258 OTU 10 seqs prokMSA_id:2740 AF050562.1 contaminated aquifer clone WCHB1-05 prokMSA_id:2745 AJ009483.1 chlorobenzene-degrading consortium clone SJA-108 prokMSA_id:65476 AJ278173.1 anaerobic bioreactor clone SHD-299 prokMSA_id:66910 AJ306794.1 DCP-dechlorinating consortium clone SHD-100 prokMSA_id:66911 AJ306793.1 DCP-dechlorinating consortium clone SHD-14 prokMSA_id:77298 AF524858.1 sphagnum peat bog clone K-4b6 prokMSA_id:77570 AF524862.1 sphagnum peat bog clone K-5b9 prokMSA_id:101137 AB186890.1 polychlorinated dioxin dechlorinating microcosm clone TSBW12 prokMSA_id:101467 AB186892.1 polychlorinated dioxin dechlorinating microcosm clone TSBb03 prokMSA_id:105928 AB186886.1 polychlorinated dioxin dechlorinating microcosm clone TSAC08 2.11.1.1.1.1.276 OTU 1 seq prokMSA_id:21437 AJ249113.1 DCP-dechlorinating consortium clone SHA-105 2.11.1.1.1.1.334 OTU 1 seq prokMSA_id:1298 AB015556.1 deep-sea sediment clone BD3-16 2.11.1.1.1.1.376 OTU 1 seq prokMSA_id:2707 AF050568.1 contaminated aquifer clone WCHB1-63 2.11.1.1.1.1.487 OTU 1 seq prokMSA_id:85265 AB109437.1 thermophilic UASB granular sludge isolate str. IMO-1 bacterium 2.11.1.1.1.1.490 OTU 1 seq prokMSA_id:83666 AB109438.1 mesophilic UASB granular sludge isolate str. YMTK-2 bacterium 2.11.1.1.1.1.537 OTU 27 seqs prokMSA_id:2726 X84483.1 organism (ID SBR1040) clone prokMSA_id:17004 AY037556.1 soil clone S002 prokMSA_id:19034 AY037625.1 soil clone S111 prokMSA_id:20488 AF107330.1 chemocline meromictic alpine lake clone prokMSA_id:21638 AF423206.1 soil clone 1028-2 prokMSA_id:22845 AF234759.1 sludge clone S16 prokMSA_id:40747 AY037587.1 soil clone S054 prokMSA_id:48198 AY037557.1 soil clone S003 prokMSA_id:67258 AF495430.1 sludge TaeJon WWTP clone F13.34 prokMSA_id:67292 AF495396.1 sludge KNR process (aerobic/anaerobic conditions) clone F10.31 prokMSA_id:67536 AF234710.1 sludge clone H1 prokMSA_id:67537 AF234698.1 sludge clone A30 prokMSA_id:67538 AF234691.1 sludge clone H19 prokMSA_id:67539 AF234682.1 sludge clone A11b prokMSA_id:70551 AF423290.1 soil clone 746-2 prokMSA_id:71187 AF423285.1 soil clone 666-2 prokMSA_id:72088 AF423278.1 soil clone 572-2 prokMSA_id:72308 AF423295.1 soil clone 838-2 prokMSA_id:73823 X84498.2 mixed genomic activated sludge clone SBR1064 prokMSA_id:86049 AY214804.1 soil clone BB-2-F8R prokMSA_id:93900 AY361935.1 clone P8-GEN-27 prokMSA_id:113131 AY921736.1 farm soil adjacent to silage storage bunker clone AKYH936 prokMSA_id:113285 AY921734.1 farm soil adjacent to silage storage bunker clone AKYH1368 prokMSA_id:113361 AY921737.1 farm soil adjacent to silage storage bunker clone AKYG651 prokMSA_id:113609 AY922075.1 farm soil adjacent to silage storage bunker clone AKYG892 prokMSA_id:113762 AY921735.1 farm soil adjacent to silage storage bunker clone AKYH1311 prokMSA_id:114086 AY921738.1 farm soil adjacent to silage storage bunker clone AKYH400 2.11.1.1.1.1.57 OTU 1 seq prokMSA_id:31908 AJ249112.1 DCP-dechlorinating consortium clone SHA-300 2.11.1.1.1.1.583 OTU 1 seq prokMSA_id:65478 AJ278171.2 anaerobic bioreactor clone SHD-238 2.11.1.1.1.1.683 OTU 1 seq prokMSA_id:2741 AF050563.1 contaminated aquifer clone WCHB1-80 2.11.1.1.1.1.689 OTU 2 seqs prokMSA_id:2743 AF050567.1 contaminated aquifer clone WCHA1-69 prokMSA_id:73947 AY082460.1 neutral pH mine biofilm clone 44a-B1-15 2.11.1.1.1.1.693 OTU 2 seqs prokMSA_id:37891 AF316762.1 Crater Lake clone CL500-86 prokMSA_id:51154 AF316759.1 lake clone CL500-11 2.11.1.1.1.1.695 OTU 5 seqs prokMSA_id:1285 AF027036.1 hot spring clone OPB65 prokMSA_id:1297 AF018195.1 hot spring clone env.OPS12 prokMSA_id:18359 AF445735.1 travertine hot spring clone SM2G02 prokMSA_id:52019 AF445746.1 travertine hot spring clone SM2H10 prokMSA_id:74684 AF445659.1 travertine hot spring clone SM1B12 2.11.1.1.1.1.76 OTU 1 seq prokMSA_id:66944 AJ306749.1 DCP-dechlorinating consortium clone SHA-147 2.11.1.1.1.1.766 OTU 5 seqs prokMSA_id:2728 AF050564.1 contaminated aquifer clone WCHB1-43 prokMSA_id:2742 AF050565.1 contaminated aquifer clone WCHB1-44 prokMSA_id:20651 AJ249108.1 DCP-dechlorinating consortium clone SHA-56 prokMSA_id:47263 AJ249100.1 DCP-dechlorinating consortium clone SHA-24 prokMSA_id:56469 AJ278174.1 anaerobic bioreactor clone SHD-245 2.11.1.1.1.1.838 OTU 1 seq prokMSA_id:2722 AF050566.1 contaminated aquifer clone WCHB1-62 2.11.1.1.1.1.843 OTU 1 seq prokMSA_id:2724 AJ009500.1 chlorobenzene-degrading consortium clone SJA-170 2.11.1.1.1.1.846 OTU 1 seq prokMSA_id:2725 AF029049.1 benzene mineralizing consortium clone SB-34 2.11.1.1.1.1.850 OTU 1 seq prokMSA_id:42071 AJ387901.1 PCE-degrading consortium clone C1-28 2.11.1.1.1.1.86 OTU 1 seq prokMSA_id:45276 AF229790.1 terephthalate-degrading consortium clone TA17 2.11.1.1.1.1.869 OTU 1 seq prokMSA_id:2729 AJ009487.1 chlorobenzene-degrading consortium clone SJA-116 2.11.1.1.1.1.905 OTU 2 seqs prokMSA_id:1295 AF154100.1 hydrocarbon seep clone GCA112 prokMSA_id:1296 AF154104.1 hydrocarbon seep clone GCA004 2.11.1.1.1.1.910 OTU 1 seq prokMSA_id:2736 AF050569.1 contaminated aquifer clone WCHB1-31 2.11.1.1.1.1.927 OTU 1 seq prokMSA_id:72863 AJ441227.1 Paralvinella palmiformis mucus secretions clone P. palm C 37 bacterium 2.11.1.2 Chloroflexi-1b 12 seqs 2.11.1.2.1 Unclassified 12 seqs 2.11.1.2.1.1 sf_1 6 seqs 2.11.1.2.1.1.1071 OTU 2 seqs prokMSA_id:63984 AJ412677.1 denitrifying reactor clone 131 prokMSA_id:64880 AJ412671.1 denitrifying reactor clone 31 2.11.1.2.1.1.180 OTU 1 seq prokMSA_id:69766 AJ306745.2 DCP-dechlorinating consortium clone SHA-31 2.11.1.2.1.1.566 OTU 2 seqs prokMSA_id:2710 AJ009480.1 chlorobenzene-degrading consortium clone SJA-101 prokMSA_id:38185 AF395429.1 acetate-enriched culture clone Eub13 2.11.1.2.1.1.952 OTU 1 seq prokMSA_id:22061 AF234688.1 sludge clone H5 2.11.1.2.1.2 sf_2 3 seqs 2.11.1.2.1.2.200 OTU 2 seqs prokMSA_id:65453 AY102332.1 heavy metal-contaminated soil clone a13139 prokMSA_id:75761 AJ534639.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-90 2.11.1.2.1.2.789 OTU 1 seq prokMSA_id:30131 AF445676.1 travertine hot spring clone SM1D10 2.11.1.2.1.3 sf_3 3 seqs 2.11.1.2.1.3.2399 OTU 1 seq prokMSA_id:82558 AY221060.1 Mammoth cave clone CCM2b 2.11.1.2.1.3.432 OTU 2 seqs prokMSA_id:23428 AF234690.1 sludge clone H39 prokMSA_id:36737 AF234734.1 sludge clone S41 2.11.1.3 Chloroflexi-1f 7 seqs 2.11.1.3.1 Unclassified 7 seqs 2.11.1.3.1.1 sf_1 7 seqs 2.11.1.3.1.1.175 OTU 1 seq prokMSA_id:71882 AF419699.1 hydrothermal vent sediment clone C1_B046 2.11.1.3.1.1.27 OTU 1 seq prokMSA_id:22922 AJ249103.1 DCP-dechlorinating consortium clone SHA-21 2.11.1.3.1.1.402 OTU 1 seq prokMSA_id:72140 AF419666.1 hydrothermal vent sediment clone a1b007 2.11.1.3.1.1.765 OTU 1 seq prokMSA_id:65481 AJ278167.1 anaerobic bioreactor clone SHD-71 2.11.1.3.1.1.767 OTU 1 seq prokMSA_id:65482 AJ278166.2 anaerobic bioreactor clone SHD-197 2.11.1.3.1.1.983 OTU 2 seqs prokMSA_id:1287 AJ009453.1 chlorobenzene-degrading consortium clone SJA-15 prokMSA_id:52017 AJ249106.1 DCP-dechlorinating consortium clone SHA-3 2.11.1.4 Unclassified 32 seqs 2.11.1.4.1 Unclassified 32 seqs 2.11.1.4.1.1 sf_1 7 seqs 2.11.1.4.1.1.1054 OTU 1 seq prokMSA_id:25243 AF445692.1 travertine hot spring clone SM1F10 2.11.1.4.1.1.266 OTU 2 seqs prokMSA_id:80378 AY193181.1 thermal spring mat clone O1aA21 prokMSA_id:80786 AY193183.1 thermal spring mat clone O1aA19 2.11.1.4.1.1.374 OTU 1 seq prokMSA_id:65692 AF507691.1 forest soil clone S041 2.11.1.4.1.1.470 OTU 3 seqs prokMSA_id:2750 AF050571.1 contaminated aquifer clone WCHB1-50 prokMSA_id:2751 AJ009460.1 chlorobenzene-degrading consortium clone SJA-35 prokMSA_id:63208 AF524018.1 forested wetland clone FW24 2.11.1.4.1.2 sf_7 4 seqs 2.11.1.4.1.2.589 OTU 2 seqs prokMSA_id:44024 AF234694.1 sludge clone A31 prokMSA_id:52208 AF234723.1 sludge clone S47 2.11.1.4.1.2.663 OTU 1 seq prokMSA_id:32174 AF269004.1 lab-scale sludge clone SBR1108 2.11.1.4.1.2.8542 OTU 1 seq prokMSA_id:7895 X84607.2 sludge clone SBR2076 2.11.1.4.1.3 sf_9 21 seqs 2.11.1.4.1.3.101 OTU 1 seq prokMSA_id:26613 AB067647.1 Caldilinea aerophila 2.11.1.4.1.3.1078 OTU 1 seq prokMSA_id:70228 AF419665.1 hydrothermal vent sediment clone a2b046 2.11.1.4.1.3.188 OTU 1 seq prokMSA_id:19494 AF407193.1 CB-contaminated groundwater clone GIF1 2.11.1.4.1.3.205 OTU 1 seq prokMSA_id:76756 AJ532729.1 uranium mining waste pile clone JG34-KF-221 2.11.1.4.1.3.2539 OTU 1 seq prokMSA_id:82007 AY218649.1 penguin droppings sediments clone KD4-96 2.11.1.4.1.3.355 OTU 1 seq prokMSA_id:81161 AY214200.1 benzene-contaminated groundwater clone ZZ14AC19 2.11.1.4.1.3.356 OTU 1 seq prokMSA_id:2752 AF005749.1 deep subsurface clone H1.43.f 2.11.1.4.1.3.375 OTU 4 seqs prokMSA_id:65693 AF507690.1 forest soil clone C043 prokMSA_id:112733 AY922045.1 farm soil adjacent to silage storage bunker clone AKYG630 prokMSA_id:113898 AY922015.1 farm soil adjacent to silage storage bunker clone AKYG445 prokMSA_id:113907 AY921869.1 farm soil adjacent to silage storage bunker clone AKYH834 2.11.1.4.1.3.416 OTU 3 seqs prokMSA_id:2709 AF027031.1 hot spring clone OPB12 prokMSA_id:2712 AF027032.1 hot spring clone OPB11 prokMSA_id:2715 AF027035.1 green non-sulfur clone OPS124 2.11.1.4.1.3.576 OTU 1 seq prokMSA_id:55534 AJ306746.2 DCP-dechlorinating consortium clone SHA-36 2.11.1.4.1.3.606 OTU 1 seq prokMSA_id:71233 AF419669.1 hydrothermal vent sediment clone a2b029 2.11.1.4.1.3.67 OTU 1 seq prokMSA_id:62551 AJ504591.1 sewage sludge clone 2.11.1.4.1.3.72 OTU 1 seq prokMSA_id:83926 AY221035.1 sediments collected at Charon's Cascade near Echo River October 2000 clone CCD21 2.11.1.4.1.3.727 OTU 1 seq prokMSA_id:71875 AF507692.1 forest soil clone S0208 2.11.1.4.1.3.94 OTU 1 seq prokMSA_id:66949 AJ306740.1 DCP-dechlorinating consortium clone SHA-2 2.11.1.4.1.3.946 OTU 1 seq prokMSA_id:81557 AY216458.1 temperate estuarine mud clone KM87 2.11.2 Chloroflexi-3 75 seqs 2.11.2.1 Chloroflexales 9 seqs 2.11.2.1.1 Unclassified 9 seqs 2.11.2.1.1.1 sf_1 9 seqs 2.11.2.1.1.1.202 OTU 1 seq prokMSA_id:72831 AJ308498.1 Chloroflexus sp. 396-1 2.11.2.1.1.1.641 OTU 1 seq prokMSA_id:72494 AJ308499.1 Chloroflexus aggregans 2.11.2.1.1.1.680 OTU 1 seq prokMSA_id:31537 AJ308496.1 hypersaline microbial mat clone P4-I-0B 2.11.2.1.1.1.942 OTU 4 seqs prokMSA_id:56710 AF407685.1 Great Artesian Basin clone R08 prokMSA_id:60577 AF407724.1 Great Artesian Basin clone B55 prokMSA_id:60594 AF407705.1 Great Artesian Basin clone G32 prokMSA_id:71275 AJ308501.1 Chloroflexus aurantiacus 2.11.2.1.1.1.99 OTU 2 seqs prokMSA_id:1275 L04675.1 Heliothrix oregonensis str. F1 prokMSA_id:74629 AF445672.1 green nonsulfur clone SM1D03 2.11.2.2 Herpetosiphonales 1 seq 2.11.2.2.1 Unclassified 1 seq 2.11.2.2.1.1 sf_1 1 seq 2.11.2.2.1.1.235 OTU 1 seq prokMSA_id:1266 AF039293.1 Herpetosiphon geysericola 2.11.2.3 Roseiflexales 65 seqs 2.11.2.3.1 Unclassified 65 seqs 2.11.2.3.1.1 sf_5 65 seqs 2.11.2.3.1.1.1033 OTU 1 seq prokMSA_id:65689 AF507694.1 forest soil clone S095 2.11.2.3.1.1.1048 OTU 1 seq prokMSA_id:1281 X84565.2 sludge clone SBR2022 2.11.2.3.1.1.119 OTU 1 seq prokMSA_id:38489 AB079645.1 Green non-sulfur isolate str. B1-5 2.11.2.3.1.1.635 OTU 1 seq prokMSA_id:28650 AF418964.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTH4 2.11.2.3.1.1.752 OTU 61 seqs prokMSA_id:17199 AB041226.1 Roseiflexus castenholzii prokMSA_id:17612 AF421742.1 USA: Yellowstone clone Fairy_27 prokMSA_id:22465 AF421722.1 USA: Yellowstone clone Spray_20 prokMSA_id:24027 AF421723.1 USA: Yellowstone clone Spray_24 prokMSA_id:24679 AF421721.1 USA: Yellowstone clone Spray_10 prokMSA_id:25392 AF421752.1 USA: Yellowstone clone Witch_1 prokMSA_id:25845 AF421756.2 USA: Yellowstone clone Hs2_53 prokMSA_id:26205 AF421733.1 USA: Yellowstone clone Shosh_3 prokMSA_id:27168 AF421749.1 USA: Yellowstone clone Witch_5 prokMSA_id:28052 AF421727.1 USA: Yellowstone clone Spray_5 prokMSA_id:29258 AF421729.1 USA: Yellowstone clone Shosh_11 prokMSA_id:30748 AF445666.1 travertine hot spring clone SM1C09 prokMSA_id:31628 AF421720.1 USA: Yellowstone clone Spray_7 prokMSA_id:31734 AF421755.1 USA: Yellowstone clone Witch_7 prokMSA_id:32481 AF421724.1 USA: Yellowstone clone Spray_21 prokMSA_id:32728 AF421726.1 USA: Yellowstone clone Spray_8 prokMSA_id:33000 AF421738.1 USA: Yellowstone clone Shosh_17 prokMSA_id:33553 AF421745.1 USA: Yellowstone clone Shosh_28 prokMSA_id:34647 AF421743.1 USA: Yellowstone clone Fairy_9 prokMSA_id:35814 AF421735.1 USA: Yellowstone clone Shosh_38 prokMSA_id:35975 AF421748.1 hot spring clone Hs2_38 prokMSA_id:36269 AF421731.1 USA: Yellowstone clone Shosh_29 prokMSA_id:37227 AF421728.1 USA: Yellowstone clone Spray_3 prokMSA_id:37532 AF421732.1 USA: Yellowstone clone Shosh_16 prokMSA_id:37685 AF421746.1 hot spring clone Hs2_26 prokMSA_id:40262 AF421757.1 USA: Yellowstone clone Witch_8 prokMSA_id:40663 AF421725.1 USA: Yellowstone clone Spray_19 prokMSA_id:41289 AF421753.1 USA: Yellowstone clone Witch_11 prokMSA_id:43336 AF421719.1 USA: Yellowstone clone Spray_6 prokMSA_id:46361 AF421737.1 USA: Yellowstone clone Fairy_14 prokMSA_id:47670 AF421758.1 hot spring clone Witch_10 prokMSA_id:48226 AF421762.2 USA: Yellowstone clone Hs2_8 prokMSA_id:51525 AF421754.1 hot spring clone Witch_14 prokMSA_id:51953 AF421760.2 USA: Yellowstone clone Hs2_35 prokMSA_id:52656 AF421751.2 USA: Yellowstone clone Hs2_44 prokMSA_id:55351 AJ421669.1 USA:Yellowstone National Park clone MS52 prokMSA_id:69067 AJ421661.1 USA:Yellowstone National Park clone MS37 prokMSA_id:69191 AJ421664.1 USA:Yellowstone National Park clone MS41 prokMSA_id:69199 AJ421655.1 USA:Yellowstone National Park clone MS23 prokMSA_id:69243 AJ421660.1 USA:Yellowstone National Park clone MS35 prokMSA_id:69305 AJ421667.1 USA:Yellowstone National Park clone MS50 prokMSA_id:69402 AJ421651.1 USA:Yellowstone National Park clone MS17 prokMSA_id:69514 AJ421644.1 USA:Yellowstone National Park clone MS2 prokMSA_id:69547 AJ421647.1 USA:Yellowstone National Park clone MS5 prokMSA_id:69605 AJ421658.1 USA:Yellowstone National Park clone MS29 prokMSA_id:69633 AJ421659.1 USA:Yellowstone National Park clone MS32 prokMSA_id:69675 AJ421654.1 USA:Yellowstone National Park clone MS21 prokMSA_id:69860 AF421736.1 USA: Yellowstone clone Shosh_4 prokMSA_id:70132 AJ421645.1 USA:Yellowstone National Park clone MS3 prokMSA_id:70156 AJ421662.1 USA:Yellowstone National Park clone MS38 prokMSA_id:70465 AJ421650.1 USA:Yellowstone National Park clone MS15 prokMSA_id:71327 AJ421666.1 USA:Yellowstone National Park clone MS48 prokMSA_id:71472 AF421750.2 USA: Yellowstone clone Hs2_48 prokMSA_id:71961 AJ421656.1 USA:Yellowstone National Park clone MS25 prokMSA_id:72212 AF421759.1 hot spring clone Hs2_10 prokMSA_id:72864 AJ421643.1 USA:Yellowstone National Park clone MS1 prokMSA_id:73282 AF421761.2 USA: Yellowstone clone Hs2_1 prokMSA_id:73437 AJ421657.1 USA:Yellowstone National Park clone MS27 prokMSA_id:73571 AF421730.1 USA: Yellowstone clone Shosh_24 prokMSA_id:73728 AJ421652.1 USA:Yellowstone National Park clone MS19 prokMSA_id:74572 AJ421649.1 USA:Yellowstone National Park clone MS8 2.11.3 Chloroflexi-4 8 seqs 2.11.3.1 Unclassified 8 seqs 2.11.3.1.1 Unclassified 8 seqs 2.11.3.1.1.1 sf_10 1 seq 2.11.3.1.1.1.2358 OTU 1 seq prokMSA_id:13753 U20797.1 marine clone SAR202 2.11.3.1.1.2 sf_1 2 seqs 2.11.3.1.1.2.2312 OTU 1 seq prokMSA_id:21495 AF355054.1 marine clone Arctic95A-18 2.11.3.1.1.2.2495 OTU 1 seq prokMSA_id:69005 AF316764.1 lake clone CL500-10 2.11.3.1.1.3 sf_2 4 seqs 2.11.3.1.1.3.2344 OTU 1 seq prokMSA_id:65684 AF507700.1 forest soil clone C083 2.11.3.1.1.3.2356 OTU 1 seq prokMSA_id:13750 U20798.1 marine clone SAR307 2.11.3.1.1.3.2511 OTU 1 seq prokMSA_id:13754 AF005747.2 subsurface clone H1.2.f 2.11.3.1.1.3.2532 OTU 1 seq prokMSA_id:74658 AF529110.1 trichloroethene-contaminated site clone FTL276 bacterium 2.11.3.1.1.4 sf_3 1 seq 2.11.3.1.1.4.2357 OTU 1 seq prokMSA_id:13752 AF186417.1 sponge symbiont clone WS52f 2.11.4 Dehalococcoidetes 64 seqs 2.11.4.1 Unclassified 64 seqs 2.11.4.1.1 Unclassified 64 seqs 2.11.4.1.1.1 sf_1 64 seqs 2.11.4.1.1.1.2331 OTU 1 seq prokMSA_id:13743 U81649.2 anaerobic digestor clone vadinBA26 2.11.4.1.1.1.2333 OTU 1 seq prokMSA_id:13746 AF005748.2 subsurface clone H1.4.f 2.11.4.1.1.1.2335 OTU 1 seq prokMSA_id:13747 AF005745.1 subsurface clone t0.6.f 2.11.4.1.1.1.2339 OTU 1 seq prokMSA_id:77206 AJ519643.1 uranium mill tailings soil sample clone Sh765B-TzT-20 bacterium 2.11.4.1.1.1.2348 OTU 1 seq prokMSA_id:13744 AF005746.2 subsurface clone t0.8.f 2.11.4.1.1.1.2349 OTU 1 seq prokMSA_id:31890 AF407200.1 CB-contaminated groundwater clone GIF9 2.11.4.1.1.1.2354 OTU 1 seq prokMSA_id:13748 AF005750.2 subsurface clone H3.93 2.11.4.1.1.1.2367 OTU 1 seq prokMSA_id:63109 AY093473.1 deep marine sediment clone MB-B2-113 2.11.4.1.1.1.2370 OTU 48 seqs prokMSA_id:18518 AF230641.1 Dehalococcoides-like strain CBDB1 prokMSA_id:18992 AF388532.1 chloroethene-contaminated sludge pond clone DHC-bmtp sp. prokMSA_id:19679 AF349755.3 reductive DCE-dehalogenating enrichment clone DCE17 prokMSA_id:20043 AF388543.1 chloroethene-contaminated site clone DHC-lnz sp. prokMSA_id:22470 AF388537.1 chloroethene-contaminated site bioaugmented with KB1 clone DHC-kafb sp. prokMSA_id:23297 AF427908.1 RFLP type 4; TCE-dechlorinating consortium ANAS I clone 5G prokMSA_id:25537 AF388546.1 chloroethene-contaminated site clone DHC-nftx sp. prokMSA_id:25968 AF388539.1 chloroethene-contaminated site clone DHC-kb1C sp. prokMSA_id:26309 AF388542.1 chloroethene-contaminated site clone DHC-lf13 sp. prokMSA_id:29355 AF357918.2 Dehalococcoides sp. str. FL2 prokMSA_id:29714 AF427909.1 RFLP type 21; TCE-dechlorinating consortium ANAS I clone 12G prokMSA_id:31094 AF388540.1 chloroethene-contaminated site; member Pinellas community structure clone DHC-kb1P sp. prokMSA_id:31301 AF388530.1 chloroethene-contaminated site clone DHC-asd sp. prokMSA_id:31803 AF388536.1 chloroethene-contaminated site clone DHC-dll sp. prokMSA_id:33280 AF388549.1 chloroethene-contaminated site clone DHC-plk sp. prokMSA_id:34971 AF388534.1 chloroethene-contaminated site clone DHC-chd sp. prokMSA_id:39818 AF388533.1 chloroethene-contaminated sludge pond clone DHC-bmtv sp. prokMSA_id:41208 AF427912.1 RFLP type 33; TCE-dechlorinating consortium ANAS I clone 8a prokMSA_id:45038 AF388550.1 chloroethene-contaminated site clone DHC-vic sp. prokMSA_id:45091 AF388548.1 chloroethene-contaminated site; member Pinellas community structure clone DHC-pin sp. prokMSA_id:45746 AF388541.1 landfill trenches clone DHC-klf prokMSA_id:48395 AF388535.1 chloroethene-contaminated site bioaugmented with Pinellas clone DHC-dab sp. prokMSA_id:48806 AF427907.1 RFLP type 3; TCE-dechlorinating consortium ANAS I clone 4D prokMSA_id:50281 AF388531.1 chloroethene-contaminated sludge pond clone DHC-bmtc sp. prokMSA_id:51551 AF427937.1 RFLP type 22; TCE-dechlorinating consortium ANAS II clone 5H prokMSA_id:55484 AY133097.1 TCE-contaminated site clone ccslm5 prokMSA_id:56507 AY146781.1 enrichment clone Pinellas prokMSA_id:59912 AY133080.1 TCE-contaminated site clone ccslm202 prokMSA_id:62397 AF529119.1 trichloroethene-contaminated site clone FTLM182 sp. prokMSA_id:71949 AJ249262.1 DCE dechlorinating consortium clone DCEH2 prokMSA_id:73418 AY146780.1 enrichment clone KB-1/PCE prokMSA_id:73942 AY146779.1 enrichment clone KB-1/VC prokMSA_id:76593 AY165308.1 Dehalococcoides sp. str. BAV1 prokMSA_id:79135 AY185324.1 Dehalococcoides sp. clone AKS31 prokMSA_id:79207 AY185317.1 Dehalococcoides sp. clone ARC61 prokMSA_id:79293 AY185320.1 Dehalococcoides sp. clone AKS14 prokMSA_id:79375 AY185314.1 Dehalococcoides sp. clone ARC18 prokMSA_id:79443 AY185313.1 Dehalococcoides sp. clone ARC13 prokMSA_id:82039 AY217417.1 TCE-dechlorinating microbial community clone 4A prokMSA_id:82136 AY217439.1 TCE-dechlorinating microbial community clone 10H prokMSA_id:88839 AY323233.1 Dehalococcoides sp. VS prokMSA_id:92766 AY351859.1 wetland clone M7B1 prokMSA_id:108700 AY754828.1 Hudson river sediment clone Z42 prokMSA_id:109890 NC_002936.3 Dehalococcoides ethenogenes str. 195 prokMSA_id:110496 CP000027.1 Dehalococcoides ethenogenes str. 195 prokMSA_id:111590 AY882433.1 Dehalococcoides sp. TM-EtOH prokMSA_id:112290 AY882434.1 Dehalococcoides sp. WL prokMSA_id:112972 AY553936.1 Baltimore Harbor sediment clone FA3/FE2 2.11.4.1.1.1.2397 OTU 1 seq prokMSA_id:63104 AY093480.1 deep marine sediment clone MB-C2-127 2.11.4.1.1.1.2418 OTU 1 seq prokMSA_id:35933 AF407195.1 CB-contaminated groundwater clone GIF3 2.11.4.1.1.1.2438 OTU 1 seq prokMSA_id:63120 AY093464.1 deep marine sediment clone MB-A2-110 2.11.4.1.1.1.2445 OTU 1 seq prokMSA_id:63128 AY093458.1 deep marine sediment clone MB-A2-103 2.11.4.1.1.1.2484 OTU 1 seq prokMSA_id:63106 AY093479.1 deep marine sediment clone MB-C2-126 2.11.4.1.1.1.2485 OTU 1 seq prokMSA_id:63214 AF524013.1 forested wetland clone FW22 2.11.4.1.1.1.2487 OTU 1 seq prokMSA_id:76182 AJ519642.1 uranium mill tailings soil sample clone Sh765B-TzT-6 bacterium 2.11.4.1.1.1.2497 OTU 1 seq prokMSA_id:74169 AF524015.1 forested wetland clone FW60 2.11.5 Thermomicrobia 6 seqs 2.11.5.1 Unclassified 6 seqs 2.11.5.1.1 Unclassified 6 seqs 2.11.5.1.1.1 sf_1 4 seqs 2.11.5.1.1.1.1041 OTU 1 seq prokMSA_id:85874 AY250886.1 Antarctic cryptoendolith clone FBP471 2.11.5.1.1.1.221 OTU 1 seq prokMSA_id:83414 AY250872.1 lichen-dominated Antarctic cryptoendolithic community clone FBP267 2.11.5.1.1.1.236 OTU 1 seq prokMSA_id:20892 AJ420142.1 Sphaerobacter thermophilus 2.11.5.1.1.1.299 OTU 1 seq prokMSA_id:1282 M34115.1 Thermomicrobium roseum 2.11.5.1.1.2 sf_2 2 seqs 2.11.5.1.1.2.652 OTU 2 seqs prokMSA_id:78484 AJ536888.1 uranium mining waste pile soil clone JG30-KF-AS13 prokMSA_id:78862 AJ536890.1 uranium mining waste pile soil sample clone JG30-KF-CM45 2.11.6 Unclassified 15 seqs 2.11.6.1 Unclassified 15 seqs 2.11.6.1.1 Unclassified 15 seqs 2.11.6.1.1.1 sf_12 3 seqs 2.11.6.1.1.1.2523 OTU 3 seqs prokMSA_id:56484 AJ347041.1 clone TK30 prokMSA_id:60159 AJ347055.1 sponge clone TK10 prokMSA_id:106755 AY485299.1 marine sponge clone 312 2.11.6.1.1.2 sf_1 1 seq 2.11.6.1.1.2.2534 OTU 1 seq prokMSA_id:65691 AF507693.1 forest soil clone S085 2.11.6.1.1.3 sf_2 4 seqs 2.11.6.1.1.3.229 OTU 2 seqs prokMSA_id:21812 AJ309616.1 Mexico clone P4-E04 prokMSA_id:47113 AJ309630.1 Mexico clone P5-E06 2.11.6.1.1.3.818 OTU 2 seqs prokMSA_id:37755 AJ309635.1 Mexico clone P5-F08 prokMSA_id:43935 AJ309648.1 Mexico clone P6-D01 2.11.6.1.1.4 sf_3 1 seq 2.11.6.1.1.4.286 OTU 1 seq prokMSA_id:51584 AF391972.1 Thermobaculum terrenum 2.11.6.1.1.5 sf_5 2 seqs 2.11.6.1.1.5.1051 OTU 2 seqs prokMSA_id:76852 AJ519409.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-138 prokMSA_id:114339 AY913277.1 forest soil clone DUNssu055 2.11.6.1.1.6 sf_6 2 seqs 2.11.6.1.1.6.718 OTU 2 seqs prokMSA_id:34391 AY063760.1 Eikelboom Type 1851 Ben52 prokMSA_id:63978 AB087523.1 activated sludge lab-scale anaerobic aerobic sequencing batch reactor (Run6) fed with glutamate clone R6-06 2.11.6.1.1.7 sf_7 2 seqs 2.11.6.1.1.7.172 OTU 1 seq prokMSA_id:73779 AJ309580.1 Mexico clone P2-G12 2.11.6.1.1.7.757 OTU 1 seq prokMSA_id:67038 AJ306741.2 DCP-dechlorinating consortium clone SHA-8 2.12 Chrysiogenetes 1 seq 2.12.1 Chrysiogenetes 1 seq 2.12.1.1 Chrysiogenales 1 seq 2.12.1.1.1 Chrysiogenaceae 1 seq 2.12.1.1.1.1 sf_1 1 seq 2.12.1.1.1.1.963 OTU 1 seq prokMSA_id:1875 X81319.1 Chrysiogenes arsenatis 2.13 Coprothermobacteria 4 seqs 2.13.1 Unclassified 4 seqs 2.13.1.1 Unclassified 4 seqs 2.13.1.1.1 Unclassified 4 seqs 2.13.1.1.1.1 sf_1 4 seqs 2.13.1.1.1.1.751 OTU 2 seqs prokMSA_id:79191 AJ431258.1 Coprothermobacter sp. str. Dex80-3 prokMSA_id:107624 AJ431252.1 Coprothermobacter sp. str. BHI60-2 2.13.1.1.1.1.848 OTU 1 seq prokMSA_id:1249 Y08935.1 Coprothermobacter platensis 2.13.1.1.1.1.880 OTU 1 seq prokMSA_id:1250 X69335.1 Coprothermobacter proteolyticus 2.14 Cyanobacteria 1092 seqs 2.14.1 Cyanobacteria 937 seqs 2.14.1.1 Chloroplasts 260 seqs 2.14.1.1.1 Chloroplasts 260 seqs 2.14.1.1.1.1 sf_11 15 seqs 2.14.1.1.1.1.4977 OTU 1 seq prokMSA_id:40682 AF289238.1 Colacium vesiculosum str. UW Lazienki 2.14.1.1.1.1.4979 OTU 1 seq prokMSA_id:38279 AF289250.1 Phacus orbicularis str. AICB 525 2.14.1.1.1.1.5043 OTU 1 seq prokMSA_id:40174 AF289253.1 Strombomonas costata str. ACOI 2992 2.14.1.1.1.1.5053 OTU 1 seq prokMSA_id:34641 AF289251.1 Phacus pleuronectes str. SAG 1261-3b 2.14.1.1.1.1.5096 OTU 3 seqs prokMSA_id:3457 V00159.1 Euglena gracilis Pla. prokMSA_id:3458 X12890.1 Euglena gracilis str. Pringsheim Z prokMSA_id:53039 NC_001603.2 Euglena gracilis str. Z 2.14.1.1.1.1.5098 OTU 1 seq prokMSA_id:20563 AF289245.1 Euglena tripteris str. UW OB 2.14.1.1.1.1.5102 OTU 1 seq prokMSA_id:77406 AY070252.1 Euglena geniculata 2.14.1.1.1.1.5123 OTU 1 seq prokMSA_id:31682 AF289249.1 Lepocinclis fusiformis str. ACOI 1025 2.14.1.1.1.1.5171 OTU 1 seq prokMSA_id:26708 AF289254.1 Trachelomonas volvocina str. AICB 524 2.14.1.1.1.1.5179 OTU 1 seq prokMSA_id:38948 AF289252.1 Phacus skujai str. AICB 323 2.14.1.1.1.1.5224 OTU 1 seq prokMSA_id:16320 AF289244.1 Euglena stellata str. SAG 1224-14 2.14.1.1.1.1.5225 OTU 1 seq prokMSA_id:33162 AF289242.1 Euglena polymorpha str. ACOI 921 2.14.1.1.1.1.5232 OTU 1 seq prokMSA_id:24874 AF289246.1 Euglena tristella str. SAG 1224-35 2.14.1.1.1.2 sf_12 3 seqs 2.14.1.1.1.2.4971 OTU 1 seq prokMSA_id:3450 U21490.1 Chlorarachnion reptans 2.14.1.1.1.2.5019 OTU 1 seq prokMSA_id:3451 U21491.1 Chlorarachnion CCMP240 2.14.1.1.1.2.5242 OTU 1 seq prokMSA_id:3449 U21492.1 Chlorarachnion CCMP242 2.14.1.1.1.3 sf_13 1 seq 2.14.1.1.1.3.5000 OTU 1 seq prokMSA_id:72055 U67742.1 Mitrastema yamamotoi 2.14.1.1.1.4 sf_14 3 seqs 2.14.1.1.1.4.5079 OTU 2 seqs prokMSA_id:56375 AF406549.1 bacterioplankton clone AEGEAN_115 prokMSA_id:68830 X90641.1 Mantoniella squamata str. CCAP 1965/1 2.14.1.1.1.4.5222 OTU 1 seq prokMSA_id:25212 U70715.1 Cape Hatteras picoplankton clone OM5 2.14.1.1.1.5 sf_15 2 seqs 2.14.1.1.1.5.5092 OTU 2 seqs prokMSA_id:26799 U08345.1 Codium fragile prokMSA_id:97540 AY389515.1 Codium fragile 2.14.1.1.1.6 sf_5 234 seqs 2.14.1.1.1.6.4966 OTU 1 seq prokMSA_id:34845 AF244549.1 Adiantum pedatum 2.14.1.1.1.6.4967 OTU 1 seq prokMSA_id:83959 AF534438.1 Toolik Lake main station at 3 m depth clone TLM14 2.14.1.1.1.6.4975 OTU 1 seq prokMSA_id:3490 X76084.1 Nanochlorum eucaryotum Pla. 2.14.1.1.1.6.4976 OTU 1 seq prokMSA_id:42014 AF244550.1 Calypogeia muelleriana 2.14.1.1.1.6.4983 OTU 1 seq prokMSA_id:3494 X65100.1 Chlorella mirabilis Pla. 2.14.1.1.1.6.4984 OTU 1 seq prokMSA_id:30128 U70721.1 Cape Hatteras picoplankton clone OM164 2.14.1.1.1.6.4986 OTU 2 seqs prokMSA_id:3484 J01395.1 Chlamydomonas reinhardii -- chloroplast prokMSA_id:79762 BK000554.2 Chlamydomonas reinhardtii 2.14.1.1.1.6.4987 OTU 1 seq prokMSA_id:3393 X82495.1 Gloeochaete wittrockiana 2.14.1.1.1.6.4990 OTU 1 seq prokMSA_id:3497 D11349.1 Chlorella saccharophila 2.14.1.1.1.6.4994 OTU 3 seqs prokMSA_id:52865 AF170717.1 Porphyra leucosticta str. SAG B 55.88 prokMSA_id:53015 NC_000925.1 Porphyra purpurea str. Avonport prokMSA_id:69121 U38804.1 Porphyra purpurea str. Avonport 2.14.1.1.1.6.5006 OTU 58 seqs prokMSA_id:3481 X65099.1 Chlorella kessleri Pla. prokMSA_id:3483 X65689.1 Chlorella sorokiniana Pla. prokMSA_id:3488 D11346.1 Chlorella kessleri prokMSA_id:3499 X16579.1 Chlorella vulgaris Pla. prokMSA_id:16639 AJ387754.1 Chlorella sp. 21 prokMSA_id:17252 AF428475.1 moss-dominated arid soil crust clone moss33 prokMSA_id:17254 AF350259.1 Chlorella vulgaris str. UTEX 259 prokMSA_id:18215 AF428503.1 moss-dominated arid soil crust clone moss32 prokMSA_id:18695 AF061065.1 Plastid transformation vector pGS31A prokMSA_id:20187 AJ409116.1 putative agent rhinosporidiosis prokMSA_id:22442 AF428476.1 moss-dominated arid soil crust clone moss35 prokMSA_id:23026 AJ007448.1 Phaseolus vulgaris prokMSA_id:26398 AF128638.1 soil clone C051 prokMSA_id:26787 AJ387750.1 Chlorella vulgaris str. IAM C-208 prokMSA_id:26834 AF428473.1 moss-dominated arid soil crust clone moss22 prokMSA_id:32970 AJ387756.1 Chlorella pyrenoidosa str. IAM C-210 prokMSA_id:34404 AJ242750.1 Chlorella vulgaris str. CCAP 211/19 prokMSA_id:36473 AJ387755.1 Chlorella sp. I prokMSA_id:36543 AF244557.1 Magnolia x soulangeana prokMSA_id:36710 AF350260.1 Chlorella vulgaris str. SDC1 prokMSA_id:38024 AF316712.1 Crater Lake clone CL120-109 prokMSA_id:38828 AB001684.1 Chlorella vulgaris prokMSA_id:39313 AJ242754.1 Chlorella vulgaris str. NIES 227 prokMSA_id:39824 AF278747.1 Koliella sempervirens prokMSA_id:39850 AF419246.1 Medicago sativa prokMSA_id:40905 AJ242751.1 Chlorella emersonii str. NIES 690 prokMSA_id:41108 AJ007447.1 Phaseolus vulgaris prokMSA_id:41814 AF278748.1 Nitella flexilis prokMSA_id:43787 AF278746.1 Koliella spiculiformis prokMSA_id:45393 AJ387757.1 Chlorella sp. V prokMSA_id:45563 U46209.1 Alnus glutinosa prokMSA_id:47517 AJ252712.1 Solanum tuberosum prokMSA_id:49481 NC_001865.1 Chlorella vulgaris prokMSA_id:51755 X95278.1 Alnus glutinosa prokMSA_id:52742 AJ387753.1 Chlorella sp. 216 prokMSA_id:52757 AJ242753.1 Chlorella vulgaris str. IAM C-27 prokMSA_id:54861 AF428474.1 moss-dominated arid soil crust clone moss23 prokMSA_id:56887 AJ518707.1 sediment clone Sai4P3-16 prokMSA_id:61291 AY043966.1 forest cut-block surface organic matter British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Williams Lake BC Canada clone NOS7.166WL prokMSA_id:61292 AY043965.1 forest cut-block mineral soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Williams Lake BC Canada clone SMW4.10WL prokMSA_id:61293 AY043964.1 forest cut-block surface organic matter British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Williams Lake BC Canada clone NOW2.115WL prokMSA_id:64444 AY102879.1 subtropical freshwater marsh clone BCM1-32B prokMSA_id:69239 AY145639.1 vents and steam clone FL10D12 prokMSA_id:70573 AF334696.1 Calothrix parietina str. SRSBG-14 prokMSA_id:71605 AJ278625.1 Cuscuta subinclusa prokMSA_id:73853 AF334695.1 Calothrix parietina str. SRSBG-14 prokMSA_id:83443 AF497782.1 Raphidonema nivale str. IAM C-166 prokMSA_id:83538 AF497789.1 Zygnema sp. KA-2002 prokMSA_id:83946 AF497788.1 Chaetosphaeridium globosum prokMSA_id:84762 AF497792.1 Nitellopsis obtusa prokMSA_id:85205 AF497783.1 Koliella planctonica prokMSA_id:85873 AF497781.1 Raphidonema nivale str. CCAP prokMSA_id:86193 AF497791.1 Chara strigosa prokMSA_id:89527 AY191350.1 Nankai Trough sediments; ODP Leg 190 site 1176A clone 194mbsf6 prokMSA_id:89881 AB097922.1 Calothrix sp. str. KU004 prokMSA_id:98871 AJ583813.1 Bugach pond clone DGGE band 34 prokMSA_id:101905 AY553213.1 Auxenochlorella protothecoides CS-41 prokMSA_id:110514 AJ867655.1 melted red snow water clone RS 8-Bact67 2.14.1.1.1.6.5007 OTU 1 seq prokMSA_id:85239 AF534437.1 Toolik Lake main station at 3 m depth clone TLM13/TLMdgge20 2.14.1.1.1.6.5018 OTU 2 seqs prokMSA_id:3509 U24586.1 "Juniperus virginiana" prokMSA_id:19534 AF445656.1 travertine hot spring clone SM1B08 2.14.1.1.1.6.5026 OTU 2 seqs prokMSA_id:3530 U24584.1 Ephedra trifurca prokMSA_id:36243 AF244555.1 Gnetum leyboldii 2.14.1.1.1.6.5033 OTU 1 seq prokMSA_id:46777 U70717.1 Cape Hatteras picoplankton clone OM81 2.14.1.1.1.6.5039 OTU 1 seq prokMSA_id:47593 U70723.1 Cape Hatteras picoplankton clone OM270 2.14.1.1.1.6.5040 OTU 31 seqs prokMSA_id:3506 U24580.1 Angiopteris evecta prokMSA_id:3511 U24582.1 Cibotium glaucum prokMSA_id:3512 U24583.1 "Doodia maxima" prokMSA_id:3514 V00165.1 Nicotiana tabacum (tobacco) prokMSA_id:3516 D17510.1 Pinus thunbergii prokMSA_id:3517 U24592.1 Sphagnum palustre prokMSA_id:3521 U03555.1 Alnus incana -- chloroplast prokMSA_id:3531 X04465.1 Marchantia polymorpha Pla. prokMSA_id:3532 M82900.1 Nicotiana plumbaginifolia -- chloroplast str|Streptomycin-resistant ??|Streptom prokMSA_id:3542 X70938.1 Nicotiana plumbaginifolia -- chloroplast prokMSA_id:3546 X73670.1 Daucus carota -- chloroplast prokMSA_id:3552 L37580.1 Ricinis communis prokMSA_id:3554 U24594.1 Osmunda cinnamomea prokMSA_id:3559 X72584.1 Cuscuta reflexa -- chloroplast prokMSA_id:18362 AJ401353.1 Cuscuta campestris prokMSA_id:21502 AJ401355.1 Cuscuta platyloba prokMSA_id:32016 AF244558.1 Megaceros aenigmaticus prokMSA_id:35330 AJ401354.1 Cuscuta europaea prokMSA_id:40521 AF244563.1 Polytrichum commune prokMSA_id:41462 AF244561.1 Phaeoceros laevis prokMSA_id:48267 U76911.1 Carica papaya prokMSA_id:48948 AF244554.1 Ginkgo biloba prokMSA_id:52573 AF244560.1 Nymphaea tuberosa prokMSA_id:53526 AJ007728.1 Orobanche minor prokMSA_id:62969 AF526941.1 Mars Odyssey Orbiter and encapsulation facility clone T5-20 sample prokMSA_id:64370 AJ440719.1 putative agent rhinosporidiosis prokMSA_id:69031 Y18934.1 Solanum nigrum prokMSA_id:69292 AJ278624.1 Cuscuta odorata prokMSA_id:72159 AJ278623.1 Cuscuta gronovii prokMSA_id:74351 AJ278626.1 Cuscuta reflexa prokMSA_id:84627 AY216521.1 Lycopersicon esculentum 2.14.1.1.1.6.5041 OTU 1 seq prokMSA_id:27542 AF170715.1 Flintiella sanguinaria str. SAG B 40.94 2.14.1.1.1.6.5055 OTU 2 seqs prokMSA_id:32850 AJ222802.1 Prototheca wickerhamii str. 263-11 prokMSA_id:48130 AJ245645.1 Prototheca wickerhamii str. 263-11 2.14.1.1.1.6.5060 OTU 37 seqs prokMSA_id:3401 L10940.1 marine snow clone AGG46 prokMSA_id:3403 X82155.1 Skeletonema pseudocostatum prokMSA_id:3439 X82154.1 Skeletonema costatum prokMSA_id:18056 AF418977.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HTDD6 prokMSA_id:26067 AF418975.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HT2F1 prokMSA_id:30625 AF418971.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HT2A3 prokMSA_id:42337 AF418972.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HTB2 prokMSA_id:44942 AF418974.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HT2B7 prokMSA_id:48163 AF418973.1 USA: Colorado Fort Collins Horsetooth Reservoir clone HT2A8 prokMSA_id:48825 NC_001713.1 Odontella sinensis prokMSA_id:63316 AF523902.1 forested wetland clone RCP2-13 prokMSA_id:63815 AF454328.1 plastid clone ML310M-8 prokMSA_id:64737 AF514855.1 Haslea wawrikae prokMSA_id:64739 AF514853.1 Haslea pseudostrearia prokMSA_id:64743 AF514852.1 Haslea ostrearia prokMSA_id:64745 AF514851.1 Haslea sp prokMSA_id:64746 AF514848.1 Pleurosigma intermedium prokMSA_id:69021 Z67753.1 Odontella sinensis prokMSA_id:95798 AJ538357.1 chemocline clone 53 prokMSA_id:101506 AJ536452.1 Bacillaria paxillifer str. p73 prokMSA_id:101680 AJ536453.1 Fragilaria striatula str. p126 prokMSA_id:101837 AJ536454.1 Thalassionema nitzschioides str. p111 prokMSA_id:101999 AJ536455.1 Asterionellopsis glacialis str. p126 prokMSA_id:102450 AJ536458.1 Thalassiosira eccentrica str. P108 prokMSA_id:102592 AY212634.1 water 20 m upstream manure clone 182up prokMSA_id:102607 AJ536459.1 Lauderia borealis str. P125 CCAP 1044/1 prokMSA_id:103868 AY212583.1 water 10 m downstream manure clone 133ds10 prokMSA_id:106374 AJ536461.1 Rhizosolenia setigera str. p112 prokMSA_id:106691 AJ536463.1 Aulacoseira ambigua str. P140 prokMSA_id:106846 AJ536464.1 Melosira varians str. p107 prokMSA_id:109247 AY794215.1 soil clone F4C76 prokMSA_id:112191 AF514850.1 Haslea nipkowii prokMSA_id:112262 AF514854.1 Haslea salstonica prokMSA_id:112272 AY221720.1 Stephanodiscus minutulus str. SAG 49.91 prokMSA_id:112342 AF514849.1 Haslea crucigera prokMSA_id:112373 AY221721.1 Nitzschia frustulum str. SAG 1052-2 prokMSA_id:114290 AY921907.1 farm soil adjacent to silage storage bunker clone AKYH1430 2.14.1.1.1.6.5095 OTU 3 seqs prokMSA_id:31996 AF374190.1 Chlamydomonas dysosmos str. UTEX 2399 prokMSA_id:47887 AF374186.1 Chlamydomonas humicola str. UTEX 225 prokMSA_id:49287 AF394204.1 Chlamydomonas applanata str. UTEX 225 2.14.1.1.1.6.5097 OTU 2 seqs prokMSA_id:3390 U30821.1 Cyanophora paradoxa Pla. prokMSA_id:53530 NC_001675.1 Cyanophora paradoxa str. Pringsheim LB555 2.14.1.1.1.6.5099 OTU 1 seq prokMSA_id:3534 U24591.1 Selaginella apoda 2.14.1.1.1.6.5101 OTU 1 seq prokMSA_id:3536 U24596.1 Spirogyra maxima 2.14.1.1.1.6.5105 OTU 1 seq prokMSA_id:3538 X75522.1 Klebsormidium flaccidum 2.14.1.1.1.6.5106 OTU 1 seq prokMSA_id:3392 X82496.1 "Glaucocystis nostochinearum" 2.14.1.1.1.6.5108 OTU 1 seq prokMSA_id:3474 Z29521.1 Chondrus crispus 2.14.1.1.1.6.5109 OTU 1 seq prokMSA_id:3476 X81903.1 "Glaucosphaera vacuolata" 2.14.1.1.1.6.5111 OTU 1 seq prokMSA_id:3500 D11348.1 Chlorella saccharophila 2.14.1.1.1.6.5112 OTU 1 seq prokMSA_id:3479 X52985.1 Cyanidium caldarium -- chloroplast 2.14.1.1.1.6.5120 OTU 1 seq prokMSA_id:3438 AJ007876.1 cyanobacterium clone LD27 2.14.1.1.1.6.5122 OTU 1 seq prokMSA_id:3540 X75519.1 Chara sp. 2.14.1.1.1.6.5130 OTU 1 seq prokMSA_id:49945 AF445714.1 travertine hot spring clone SM2B11 2.14.1.1.1.6.5135 OTU 1 seq prokMSA_id:3475 Z18289.1 Palmaria palmata -- chloroplast 2.14.1.1.1.6.5136 OTU 1 seq prokMSA_id:35074 U67743.1 Cynomorium coccineum 2.14.1.1.1.6.5137 OTU 2 seqs prokMSA_id:42846 AF374188.1 Polytoma oviforme str. SAG 62-27 prokMSA_id:48283 AF394207.1 Polytoma oviforme str. SAG 62-27 2.14.1.1.1.6.5139 OTU 1 seq prokMSA_id:29775 AF170713.1 Compsopogon coeruleus str. SAG B 36.94 2.14.1.1.1.6.5140 OTU 1 seq prokMSA_id:3495 X65688.1 Chlorella protothecoides Pla. 2.14.1.1.1.6.5147 OTU 15 seqs prokMSA_id:3462 U32671.1 picoplankton clone OM21 prokMSA_id:3465 X65101.1 Ochrosphaera spec. Pla. prokMSA_id:3466 X80390.1 Ochrosphaera neapolitana prokMSA_id:3467 X75518.1 Isochrysis sp. prokMSA_id:3468 X82156.1 Emiliania huxleyi prokMSA_id:3469 Z77353.1 Cyanobacteria 1-140 C10 prokMSA_id:22013 U70719.1 prokMSA_id:23395 AF316700.1 Crater Lake clone CL120-71 prokMSA_id:34744 AF469400.1 clone 33-PA67B00 prokMSA_id:35915 U70720.1 prokMSA_id:40411 AF316699.1 Crater Lake clone CL120-48 prokMSA_id:48463 AF172719.1 Chrysochromulina polylepis str. B152j prokMSA_id:48657 AF316701.1 Crater Lake clone CL120-75 prokMSA_id:72546 X99077.1 Ochrosphaera neapolitana str. CCMP593 prokMSA_id:83678 AB089243.1 Morganella morganii str. JCM1672 2.14.1.1.1.6.5154 OTU 1 seq prokMSA_id:19992 AF170716.1 Bangia fuscopurpurea str. SAG B 59.81 2.14.1.1.1.6.5156 OTU 1 seq prokMSA_id:3482 X12742.1 Chlorella ellipsoidea -- chloroplast 2.14.1.1.1.6.5158 OTU 1 seq prokMSA_id:30150 AF172715.1 Pavlova gyrans 2.14.1.1.1.6.5166 OTU 18 seqs prokMSA_id:3470 X55015.1 Pyrenomonas salina Pla. prokMSA_id:3472 S73904.1 Cryptomonas phi -- chloroplast prokMSA_id:25107 U70724.1 environmental sample Cape Hatteras picoplankton clone OM283 prokMSA_id:51823 NC_000926.1 Guillardia theta prokMSA_id:60252 AB073113.1 Proteomonas sulcata str. CCMP765 prokMSA_id:60253 AB073112.1 Hemiselmis virescens str. CCMP442 prokMSA_id:60255 AB073110.1 Chroomonas placoidea str. MBIC10238 prokMSA_id:69145 AB073111.1 Geminigera cryophila str. MBIC10567 prokMSA_id:69194 AB073114.1 Dinophysis acuminata prokMSA_id:69410 AB073116.1 Dinophysis norvegica prokMSA_id:69432 AF041468.1 Guillardia theta prokMSA_id:69476 AF497900.1 Eukaryota; Chlorophyta; prokMSA_id:71043 AB073115.1 Dinophysis fortii prokMSA_id:72132 AJ239996.1 algal chloroplast () clone DGGE band CIBAC-9 prokMSA_id:73189 AF497899.1 Eukaryota; Cryptophyta; prokMSA_id:80010 AF530387.1 Dinophysis acuta str. acutNP09 prokMSA_id:80089 AF530388.1 Dinophysis norvegica str. norvCC04 prokMSA_id:80457 AF530383.1 Dinophysis acuminata str. acumGC08 2.14.1.1.1.6.5170 OTU 3 seqs prokMSA_id:16609 AF170714.1 Stylonema alsidii str. SAG B 2.94 prokMSA_id:47228 AF170712.1 Chroodactylon ramosum str. SAG B 103.79 prokMSA_id:47632 AF170719.1 Rhodosorus marinus str. SAG 116.79 2.14.1.1.1.6.5176 OTU 1 seq prokMSA_id:47684 AF356019.1 hydrothermal waters isolate str. NZ4 2.14.1.1.1.6.5181 OTU 1 seq prokMSA_id:29047 U47845.1 Cytinus ruber 2.14.1.1.1.6.5182 OTU 14 seqs prokMSA_id:3501 M81884.1 Epifagus virginiana -- chloroplast prokMSA_id:3505 X15901.1 Oryza sativa -- chloroplast prokMSA_id:3518 U24590.1 Psilotum nudum prokMSA_id:3525 U24595.1 Tmesipteris oblanceolata prokMSA_id:3526 U24587.1 Lycopodium digitatum prokMSA_id:3527 U24593.1 Equisetum arvense prokMSA_id:3544 X58864.1 Conopholis americana Pla. prokMSA_id:3545 U24585.1 Isoetes melanopoda prokMSA_id:3549 U24589.1 Ophioglossum engelmannii prokMSA_id:3550 U24588.1 Lygodium japonicum prokMSA_id:18059 AF176637.1 Oryza sativa prokMSA_id:46607 NC_001320.1 Oryza sativa (japonica cultivar-group) prokMSA_id:52836 AJ239003.1 Triticum aestivum prokMSA_id:74494 AF244556.1 Huperzia lucidula 2.14.1.1.1.6.5183 OTU 2 seqs prokMSA_id:3504 X51598.1 Pisum sativum Pla. 2 prokMSA_id:3529 M37430.1 Pisum sativum -- chloroplast 2.14.1.1.1.6.5192 OTU 1 seq prokMSA_id:39969 AF244551.1 Cycas revoluta 2.14.1.1.1.6.5203 OTU 1 seq prokMSA_id:45967 U67740.1 Bdallophyton americanum 2.14.1.1.1.6.5221 OTU 1 seq prokMSA_id:3400 U32670.1 picoplankton clone OM20 2.14.1.1.1.6.5231 OTU 1 seq prokMSA_id:44394 AF289158.1 freshwater clone PRD01a010B 2.14.1.1.1.6.5240 OTU 1 seq prokMSA_id:3447 M82860.1 Olisthodiscus luteus -- chloroplast 2.14.1.1.1.6.5241 OTU 1 seq prokMSA_id:3448 X14873.1 Pylaiella littoralis Pla. 2.14.1.1.1.7 sf_9 2 seqs 2.14.1.1.1.7.4973 OTU 2 seqs prokMSA_id:47280 AJ294725.1 Euglena longa str. CCAP 1204/17a prokMSA_id:52998 NC_002652.1 Euglena longa str. CCAP 1204/17a 2.14.1.10 Phormidium 1 seq 2.14.1.10.1 Unclassified 1 seq 2.14.1.10.1.1 sf_1 1 seq 2.14.1.10.1.1.4978 OTU 1 seq prokMSA_id:70492 AB058225.1 LPP-group isolate str. MBIC10087 2.14.1.11 Planktothricoides 6 seqs 2.14.1.11.1 Unclassified 6 seqs 2.14.1.11.1.1 sf_1 6 seqs 2.14.1.11.1.1.5178 OTU 6 seqs prokMSA_id:56232 AB045967.1 Planktothricoides raciborskii str. T1-6-2 prokMSA_id:58434 AB045963.1 Planktothricoides raciborskii str. NSLA4 prokMSA_id:58435 AB045964.1 Planktothricoides raciborskii str. OR1-1 prokMSA_id:58436 AB045962.1 Planktothricoides raciborskii str. NSLA3 prokMSA_id:58439 AB045960.1 Planktothricoides raciborskii str. NIES 207 prokMSA_id:58445 AB045953.1 Planktothricoides raciborskii str. INBaOR 2.14.1.12 Plectonema 9 seqs 2.14.1.12.1 Unclassified 9 seqs 2.14.1.12.1.1 sf_1 9 seqs 2.14.1.12.1.1.5010 OTU 1 seq prokMSA_id:3289 AF170757.1 LPP-group cyanobacterium isolate str. QSSC5cya QSSC5cya 2.14.1.12.1.1.5190 OTU 7 seqs prokMSA_id:3259 AB015062.1 Synechococcus sp. str. PCC7335 prokMSA_id:3290 AF170758.1 LPP-group cyanobacterium isolate str. QSSC8cya prokMSA_id:3293 AF091110.1 Plectonema sp. str. F3 prokMSA_id:69558 AB058200.1 Phormidium sp. str. MBIC10002 prokMSA_id:73558 AB058267.1 LPP-group isolate str. MBIC10597 prokMSA_id:83595 AY250870.1 lichen-dominated Antarctic cryptoendolithic community clone FBP256 prokMSA_id:94566 AY151722.1 microbial mat clone BGC-Fr054 2.14.1.12.1.1.5210 OTU 1 seq prokMSA_id:85304 AY250881.1 lichen-dominated Antarctic cryptoendolithic community clone FBP403 2.14.1.13 Pleurocapsales 19 seqs 2.14.1.13.1 Unclassified 19 seqs 2.14.1.13.1.1 sf_1 19 seqs 2.14.1.13.1.1.5046 OTU 1 seq prokMSA_id:3208 AF132783.1 Xenococcus sp. str. PCC 7305 2.14.1.13.1.1.5134 OTU 2 seqs prokMSA_id:24455 AJ344557.1 Chroococcidiopsis sp. str. PCC 6712 prokMSA_id:42907 AB039004.1 Chroococcidiopsis sp. str. PCC 6712 2.14.1.13.1.1.5198 OTU 16 seqs prokMSA_id:3207 X78681.1 Pleurocapsa sp. prokMSA_id:24335 AB039006.1 Pleurocapsa sp. str. PCC 7319 prokMSA_id:24838 AJ344556.1 Chroococcidiopsis sp. str. CCMP1489 prokMSA_id:42381 AJ344561.1 Myxosarcina sp. str. PCC 7312 prokMSA_id:45178 AJ344562.1 Myxosarcina sp. str. SAG 30.84; PCC 7325 prokMSA_id:45775 AJ344559.1 Dermocarpella incrassata str. SAG 29.84; PCC 7326 prokMSA_id:46080 AB039009.1 Stanieria sp. str. PCC 7301 prokMSA_id:46462 AJ344564.1 Pleurocapsa minor str. SAG 4.99 prokMSA_id:69285 AB058218.1 Dermocarpa sp. str. MBIC10056 prokMSA_id:69707 AB058287.1 Dermocarpa sp. str. MBIC10768 prokMSA_id:69734 AB058199.1 Dermocarpa sp. str. MBIC10001 prokMSA_id:71088 AB058284.1 Dermocarpa sp. str. MBIC10765 prokMSA_id:71478 AB058285.1 Dermocarpa sp. str. MBIC10766 prokMSA_id:74148 AB058202.1 Dermocarpa sp. str. MBIC10004 prokMSA_id:80524 AB074510.1 Xenococcus sp. str. PCC 7307 prokMSA_id:80822 AB074511.1 Pleurocapsa sp. str. PCC 7314 2.14.1.14 Prochlorales 200 seqs 2.14.1.14.1 Unclassified 200 seqs 2.14.1.14.1.1 sf_1 200 seqs 2.14.1.14.1.1.5001 OTU 1 seq prokMSA_id:60158 AJ347056.1 sponge clone TK09 2.14.1.14.1.1.5076 OTU 199 seqs prokMSA_id:3315 M63814.1 "Unknown Cyanobacterium (P.) 2" prokMSA_id:3328 AJ006282.1 cyanobacterium LD9 clone LD9 prokMSA_id:3333 D89036.1 Microcystis holsatica str. NIES43 prokMSA_id:3335 AF001477.1 Cyanobium gracile PCC 6307 str. PCC6307 prokMSA_id:3338 AF001480.1 Synechococcus sp. WH 8101 str. WH8101 prokMSA_id:3339 AF081834.1 Synechococcus sp. WH 7803 str. WH7803 prokMSA_id:3341 D50615.1 Synechococcus sp. Biwa-G0 prokMSA_id:3343 AF098370.1 most closely related to Prochlorococcus marinus isolate str. ACE ACE prokMSA_id:3344 AF098371.1 most closely related to Prochlorococcus marinus isolate str. PENDANT PENDANT prokMSA_id:3345 AF098372.1 most closely related to Prochlorococcus marinus isolate str. ABRAXAS ABRAXAS prokMSA_id:3346 AB015058.1 Synechococcus sp. str. PCC7001 prokMSA_id:3347 AF053397.1 Prochlorococcus marinus MIT 9303 prokMSA_id:3348 AF053399.1 Prochlorococcus marinus MIT 9313 str. MIT9313 str. prokMSA_id:3350 X52169.1 str clone SAR6 prokMSA_id:3351 AF115268.1 Prochlorococcus marinus MIT 9201 str. MIT9201 str. prokMSA_id:3352 AF115269.1 Prochlorococcus marinus MIT 9202 str. MIT9202 str. prokMSA_id:3353 AF115270.1 Prochlorococcus marinus MIT 9211 prokMSA_id:3372 AF098373.1 Synechococcus-like isolate str. P211 prokMSA_id:3373 AF098374.1 Synechococcus-like isolate str. P212 prokMSA_id:3374 AB001724.1 Microcystis elabens str. NIES42 prokMSA_id:3375 AF180967.1 Prochlorococcus marinus prokMSA_id:3376 AF053396.1 Prochlorococcus marinus MIT 9302 str. MIT9302 str. prokMSA_id:3377 AF053398.1 Prochlorococcus marinus prokMSA_id:16741 AF216947.1 Synechococcus sp. PCC 7918 str. PCC7918 prokMSA_id:21853 AF311291.1 Synechococcus sp. str. WH 7803 prokMSA_id:22119 AB060938.1 Japan:Tokyo Okutama Lake Okutama clone B7 prokMSA_id:22911 AF216950.1 Synechococcus sp. PCC 9005 str. PCC9005 prokMSA_id:23065 AF245618.1 Synechococcus clone NAC1-5 prokMSA_id:28802 AJ133176.1 Synechococcus sp. str. GL150636 prokMSA_id:28869 AJ289785.1 closely related to Synechococcus WH8103 clone 5X15 prokMSA_id:29390 AF216951.1 Synechococcus sp. str. PS680 prokMSA_id:30769 AF311219.1 Prochlorococcus marinus subsp. pastoris str. RCC280; NATL2 subsp. prokMSA_id:30851 AF216954.1 Synechococcus sp. str. PS721 prokMSA_id:33102 AF311218.1 Prochlorococcus marinus subsp. pastoris str. RCC277; NATL1 subsp. prokMSA_id:33530 AF311292.1 Synechococcus sp. str. WH 8018 prokMSA_id:33656 AF216955.1 Synechococcus sp. str. PS723 prokMSA_id:37989 AF216945.1 Synechococcus sp. PCC 7009 str. PCC7009 prokMSA_id:38616 AF216952.1 Synechococcus sp. str. PS715 prokMSA_id:38890 AF311220.1 Prochlorococcus marinus TAK9803-2 str. RCC264; Tak9803-2 str. prokMSA_id:45601 AF216953.1 Synechococcus sp. str. PS717 prokMSA_id:46334 AF216948.1 Synechococcus sp. PCC 7920 str. PCC7920 prokMSA_id:46500 AF369648.1 Synechococcus sp. str. AB4192 prokMSA_id:46690 AF216944.1 Synechococcus sp. PCC 6904 str. PCC7904 prokMSA_id:47172 AF311293.1 Synechococcus sp. str. WH 8103 prokMSA_id:49782 AF311217.1 Prochlorococcus marinus EQPAC1 str. EQPAC1; RCC278 str. prokMSA_id:52928 AF317074.1 Synechococcus sp. BO 8807 str. BO8807 prokMSA_id:53000 AF330252.1 Synechococcus sp. BS 4 str. BS4 prokMSA_id:53150 AF317071.1 Synechococcus sp. BO 8801 str. BO8801 prokMSA_id:53206 AF330250.1 Synechococcus sp. str. LBB3 prokMSA_id:53228 AF317072.1 Synechococcus sp. BO 8806 str. BO8806 prokMSA_id:53283 AF330246.1 Synechococcus sp. str. BGS171 prokMSA_id:53331 AF317076.1 Synechococcus rubescens str. SAG 3.81 prokMSA_id:53471 AF330254.1 Synechococcus sp. BS 20 str. BS20 prokMSA_id:53495 AF330248.1 Synechococcus sp. str. LM94 prokMSA_id:53650 AF330251.1 Synechococcus sp. BO 0014 str. BO0014 prokMSA_id:53839 AF317077.1 Synechococcus sp. BO 981502 str. BO981502 prokMSA_id:53923 AF317075.1 Synechococcus sp. BO 9404 str. BO9404 prokMSA_id:54164 AF317079.1 Synechococcus sp. BO 984127 str. BO984127 prokMSA_id:54219 AF317073.1 Synechococcus sp. BO 8805 str. BO8805 prokMSA_id:54464 AF330247.1 Synechococcus sp. str. LBP1 prokMSA_id:54469 AF317078.1 Synechococcus sp. BO 983115 str. BO983115 prokMSA_id:54577 AF330253.1 Synechococcus sp. BS 5 str. BS5 prokMSA_id:54601 AF330249.1 Synechococcus sp. str. LBG2 prokMSA_id:58392 AY033297.1 marine bacterioplankton clone MB11A04 prokMSA_id:58393 AY033308.1 marine bacterioplankton clone MB11E09 prokMSA_id:59293 AF539812.1 Synechococcus sp. str. WH 8012 prokMSA_id:62926 AF448072.1 Synechococcus sp. str. PCC 8966 prokMSA_id:62927 AF448071.1 Synechococcus sp. str. PCC 8916 prokMSA_id:62928 AF448070.1 Synechococcus sp. str. PS845 prokMSA_id:62929 AF448069.1 Synechococcus sp. str. PS840 prokMSA_id:62930 AF448068.1 Synechococcus sp. str. PS838 prokMSA_id:62931 AF448067.1 Synechococcus sp. str. TAGS prokMSA_id:62932 AF448066.1 Synechococcus sp. str. TAG prokMSA_id:62933 AF448065.1 Synechococcus sp. str. NAN prokMSA_id:62934 AF448064.1 Synechococcus sp. str. HOS prokMSA_id:62935 AF448063.1 Synechococcus sp. str. UBR prokMSA_id:62937 AF448061.1 Synechococcus sp. str. T7cc1 prokMSA_id:62939 AF448060.1 Synechococcus sp. str. 1002 prokMSA_id:62940 AF448062.1 Synechococcus sp. str. IR48 prokMSA_id:68984 AY033310.1 marine bacterioplankton clone MB11F02 prokMSA_id:68986 AY033307.1 marine bacterioplankton clone MB11E08 prokMSA_id:69178 AB058265.1 Synechococcus sp. str. MBIC10459 prokMSA_id:69200 AY151235.1 Synechococcus sp. MW28B3 prokMSA_id:69228 AB058250.1 Synechococcus sp. str. MBIC10224 prokMSA_id:69485 AY151234.1 Synechococcus sp. MW26A5 prokMSA_id:69531 AY151245.1 Synechococcus sp. MW76B2 prokMSA_id:69544 AY151241.1 Synechococcus sp. MW73D5 prokMSA_id:69548 AY151247.1 Synechococcus sp. MW99B6 prokMSA_id:69574 AY151240.1 Synechococcus sp. MW72C6 prokMSA_id:69638 AY151249.1 Synechococcus sp. MW101C3 prokMSA_id:69725 AY151232.1 Synechococcus sp. MW15-2 prokMSA_id:69965 AY151242.1 Synechococcus sp. MW74D6 prokMSA_id:70279 AY151233.1 Synechococcus sp. MW25B5 prokMSA_id:70431 AF400152.2 USA: Mono Lake California; station 12 at depth 28m. clone MLS1228cl3 sp. prokMSA_id:70534 AY151246.1 Synechococcus sp. MW77D1 prokMSA_id:70666 AY151239.1 Synechococcus sp. MW6B4 prokMSA_id:70678 AB058226.1 Synechococcus sp. str. MBIC10089 prokMSA_id:71118 AY151248.1 Synechococcus sp. MW10#1 prokMSA_id:71256 AY151250.1 Synechococcus sp. MW73B4 prokMSA_id:71906 AB058264.1 Synechococcus sp. str. MBIC10456 prokMSA_id:72087 AY151238.1 Synechococcus sp. MW4C3 prokMSA_id:72387 AY151236.1 Synechococcus sp. MW32B5 prokMSA_id:72502 AJ416164.1 Netherlands:Lake IJssel clone Sta0-25 prokMSA_id:72834 AY151243.1 Synechococcus sp. MW6C6 prokMSA_id:73727 AB058205.1 Synechococcus sp. str. MBIC10007 prokMSA_id:74342 AY151237.1 Synechococcus sp. MW33B4 prokMSA_id:74359 AY151251.1 Synechococcus sp. MW97C4 prokMSA_id:74397 AY151244.2 Synechococcus sp. MW74D3 prokMSA_id:79102 AF382117.1 bacterioplankton clone ZA3242c prokMSA_id:79129 AF382121.1 bacterioplankton clone ZA3421c prokMSA_id:79192 AF382140.1 bacterioplankton clone ZA3833c prokMSA_id:79250 AY183115.1 Cyanobium sp. str. LB03 prokMSA_id:79350 AF382136.1 bacterioplankton clone ZA3703c prokMSA_id:79456 AY190187.1 France clone 46Fr prokMSA_id:79569 AF382128.1 bacterioplankton clone ZA3803c prokMSA_id:81048 AY125366.1 Synechococcus sp. clone A715009 prokMSA_id:81268 AY125377.1 Synechococcus sp. clone A315006 prokMSA_id:81277 AY125372.1 Synechococcus sp. clone A715016 prokMSA_id:81379 AY125360.1 Synechococcus sp. clone A715001 prokMSA_id:81393 AY125375.1 Synechococcus sp. clone A315003 prokMSA_id:81413 AY125371.1 Synechococcus sp. clone A715015 prokMSA_id:81449 AY125362.1 Synechococcus sp. clone A715003 prokMSA_id:81631 AY125364.1 Synechococcus sp. clone A715005 prokMSA_id:81638 AY125385.1 Synechococcus sp. clone A315025 prokMSA_id:81662 AY125383.1 Synechococcus sp. clone A315023 prokMSA_id:81715 AY125363.1 Synechococcus sp. clone A715004 prokMSA_id:81769 AY125369.1 Synechococcus sp. clone A715013 prokMSA_id:81828 AY125374.1 Synechococcus sp. clone A315002 prokMSA_id:81859 AY125365.1 Synechococcus sp. clone A715006 prokMSA_id:81872 AY125368.1 Synechococcus sp. clone A715012 prokMSA_id:81898 AY125380.1 Synechococcus sp. clone A315010 prokMSA_id:82121 AY125367.1 Synechococcus sp. clone A715011 prokMSA_id:82146 AY125376.1 Synechococcus sp. clone A315004 prokMSA_id:82220 AY125370.1 Synechococcus sp. clone A715014 prokMSA_id:82249 AY125381.1 Synechococcus sp. clone A315011 prokMSA_id:82268 AY125361.1 Synechococcus sp. clone A715002 prokMSA_id:82280 AY125379.1 Synechococcus sp. clone A315008 prokMSA_id:82376 AY125382.1 Synechococcus sp. clone A315020 prokMSA_id:82398 AY125386.1 Synechococcus sp. clone A315026 prokMSA_id:82763 AY172801.1 Synechococcus sp. CC9311 prokMSA_id:82788 AY172832.1 Synechococcus sp. WH 5701 prokMSA_id:83008 AY172828.1 Synechococcus sp. str. RS9918 prokMSA_id:83014 AY172814.1 Synechococcus sp. str. RS9904 prokMSA_id:83015 AY172815.1 Synechococcus sp. str. RS9905 prokMSA_id:83121 AY172808.1 Synechococcus sp. str. Minos12 prokMSA_id:83222 AY172812.1 Synechococcus sp. str. RS9902 prokMSA_id:83391 AY172834.1 Synechococcus sp. WH 8016 str. WH8016 prokMSA_id:83400 AY224198.1 Synechococcus sp. MH305 prokMSA_id:83422 AY172833.1 Synechococcus sp. WH 8002 str. WH8002 prokMSA_id:83438 AY172820.1 Synechococcus sp. str. RS9910 prokMSA_id:83522 AY224199.1 Synechococcus sp. MH301 prokMSA_id:83566 AY172817.1 Synechococcus sp. str. RS9907 prokMSA_id:84053 AY172810.1 Synechococcus sp. str. Oli31 prokMSA_id:84144 AY172837.1 Cyanobium sp. str. Bright prokMSA_id:84148 AY224200.1 Synechococcus sp. MW74D3 prokMSA_id:84700 AY172806.1 Synechococcus sp. str. Minos01-AC6F1 prokMSA_id:84712 AY172802.1 Synechococcus sp. CC9605 prokMSA_id:84801 AY172829.1 Synechococcus sp. str. RS9919 prokMSA_id:84810 AY172819.1 Synechococcus sp. str. RS9909 prokMSA_id:85023 AY172805.1 Synechococcus sp. str. Max42 prokMSA_id:85105 AY172800.1 Synechococcus sp. str. Almo3 prokMSA_id:85112 AY172803.1 Synechococcus sp. str. Dim prokMSA_id:85143 AY172821.1 Synechococcus sp. str. RS9911 prokMSA_id:85276 AY172836.1 Synechococcus sp. WH 8109 str. WH8109 prokMSA_id:85406 AY172830.1 Synechococcus sp. str. RS9920 prokMSA_id:85509 AY172811.1 Synechococcus sp. str. RS9901 prokMSA_id:85659 AY172825.1 Synechococcus sp. str. RS9915 prokMSA_id:85670 AY172824.1 Synechococcus sp. str. RS9914 prokMSA_id:85703 AY172823.1 Synechococcus sp. str. RS9913 prokMSA_id:85806 AY172822.1 Synechococcus sp. str. RS9912 prokMSA_id:85960 AY172804.1 Synechococcus sp. str. Eum14 prokMSA_id:85989 AY172826.1 Synechococcus sp. str. RS9916 prokMSA_id:86023 AY172816.1 Synechococcus sp. str. RS9906 prokMSA_id:86155 AY172813.1 Synechococcus sp. str. RS9903 prokMSA_id:86201 AY172809.1 Synechococcus sp. str. Minos02-C2C2 prokMSA_id:86476 AY172807.1 Synechococcus sp. str. Minos11 prokMSA_id:86621 AY172818.1 Synechococcus sp. str. RS9908 prokMSA_id:86649 AY172835.1 Synechococcus sp. WH 8020 str. WH8020 prokMSA_id:88136 NC_005042.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 prokMSA_id:89557 AE017162.1 Prochlorococcus CCMP1375 subsp. marinus str. CCMP1375; SS120 prokMSA_id:91747 AY344431.1 Lake Kauhako 30 m clone K2-30-3 prokMSA_id:92037 NC_005072.1 Prochlorococcus marinus subsp. pastoris str. CCMP1986 prokMSA_id:92092 BX572090.1 Prochlorococcus marinus subsp. pastoris CCMP1986 str. MED4 prokMSA_id:92221 NC_005070.1 Synechococcus sp. WH 8102 prokMSA_id:92417 BX569694.1 Synechococcus sp. WH 8102 str. WH8102 prokMSA_id:92726 NC_005071.1 Prochlorococcus marinus str. MIT 9313 prokMSA_id:93043 BX572100.1 Prochlorococcus marinus MIT 9313 str. MIT9313 prokMSA_id:93066 BX572095.1 Prochlorococcus marinus MIT 9313 str. MIT9313 prokMSA_id:98932 AY752088.1 lake water clone P38.6 prokMSA_id:101271 AB183569.1 Synechococcus sp. str. MBIC10613 prokMSA_id:101637 AY183114.1 Cyanobium sp. str. Y0011 prokMSA_id:102068 AACY01068573.1 Sargasso Sea prokMSA_id:104938 AB154314.1 freshwater clone S9JA-06 prokMSA_id:105088 AB154315.1 freshwater clone S9JA-12 prokMSA_id:105248 AB154316.1 freshwater clone S9JA-19 prokMSA_id:105562 AB154318.1 freshwater clone S9JA-38 prokMSA_id:106941 AACY01079216.1 Sargasso Sea prokMSA_id:109460 AY700634.1 Australia: Great Barrier Reef clone PDM-OTU4 prokMSA_id:109463 AY700638.1 Australia: Great Barrier Reef clone PDM-OTU8 2.14.1.15 Pseudanabaena 25 seqs 2.14.1.15.1 Unclassified 25 seqs 2.14.1.15.1.1 sf_1 25 seqs 2.14.1.15.1.1.5008 OTU 1 seq prokMSA_id:62918 AF448080.1 Synechococcus sp. str. PCC 7502 2.14.1.15.1.1.5082 OTU 1 seq prokMSA_id:58469 AB045929.1 Limnothrix redekei str. NIVA CYA 227/1 2.14.1.15.1.1.5121 OTU 2 seqs prokMSA_id:3382 AF091108.1 Pseudanabaena sp. str. PCC 7367 prokMSA_id:28470 AB039018.1 Pseudanabaena sp. str. PCC 7367 2.14.1.15.1.1.5133 OTU 1 seq prokMSA_id:16700 AB039016.1 Pseudanabaena sp. str. PCC 6802 2.14.1.15.1.1.5144 OTU 3 seqs prokMSA_id:25314 AF445673.1 travertine hot spring clone SM1D04 prokMSA_id:28685 AF445691.1 travertine hot spring clone SM1F09 prokMSA_id:40359 AF445667.1 travertine hot spring clone SM1C10 2.14.1.15.1.1.5146 OTU 2 seqs prokMSA_id:3386 AB003165.1 Phormidium mucicola str. M-221 prokMSA_id:30337 AB039019.1 Pseudanabaena sp. str. PCC 7403 2.14.1.15.1.1.5223 OTU 15 seqs prokMSA_id:3385 AF132787.1 Pseudanabaena sp. str. PCC 7402 prokMSA_id:3387 AJ007908.1 Oscillatoria limnetica str. MR1 prokMSA_id:20111 AB042842.1 Phormidium tenue str. NIES611 prokMSA_id:25499 AB042971.1 Phormidium tenue str prokMSA_id:26809 AB042984.1 Phormidium tenue str. D prokMSA_id:32638 AB042972.1 Phormidium tenue str. C prokMSA_id:33610 AB039020.1 Pseudanabaena sp. str. PCC 7408 prokMSA_id:42848 AB042838.1 Phormidium tenue str. NIES512 prokMSA_id:47367 AB042970.1 Phormidium tenue str. S prokMSA_id:49081 AB047105.1 Phormidium tenue str. Y prokMSA_id:49923 AF263339.1 Phormidium sp. str. E18 prokMSA_id:54033 AB039017.1 Pseudanabaena sp. str. PCC 6903 prokMSA_id:54183 AF218370.1 Oscillatoria sp. UTCC 393 str. UTCC393 prokMSA_id:95607 AJ580007.1 Limnothrix redekei str. CCAP 1443/1 prokMSA_id:96216 AJ580008.1 Limnothrix sp. MR1 2.14.1.16 Scytonema 2 seqs 2.14.1.16.1 Unclassified 2 seqs 2.14.1.16.1.1 sf_1 2 seqs 2.14.1.16.1.1.5023 OTU 1 seq prokMSA_id:44224 AY069954.1 Scytonema sp. str. U-3-3 2.14.1.16.1.1.5115 OTU 1 seq prokMSA_id:84987 AB093483.1 Scytonema sp. str. IAM M-262 2.14.1.17 Spirulina 8 seqs 2.14.1.17.1 Unclassified 8 seqs 2.14.1.17.1.1 sf_1 8 seqs 2.14.1.17.1.1.4989 OTU 2 seqs prokMSA_id:3233 AF091109.1 Spirulina sp. str. P7 prokMSA_id:50782 Y18792.1 Spirulina sp. str. MPI S4 2.14.1.17.1.1.5034 OTU 1 seq prokMSA_id:56680 AF329394.1 Spirulina subsalsa str. FACHB351 2.14.1.17.1.1.5050 OTU 1 seq prokMSA_id:3230 X75045.1 Spirulina species 2.14.1.17.1.1.5086 OTU 1 seq prokMSA_id:3232 AB003166.1 Spirulina subsalsa str. M-223 2.14.1.17.1.1.5090 OTU 3 seqs prokMSA_id:39534 Y18789.1 Halospirulina sp. 'MPI S3' str. MPI S3 prokMSA_id:71513 Y18791.1 Halospirulina tapeticola str. CCC Baja-95 Cl.2 prokMSA_id:72932 Y18790.1 Halospirulina sp. 'CCC Cl.3' str. CCC Baja-95 Cl.3 'CCC 2.14.1.18 Symploca 6 seqs 2.14.1.18.1 Unclassified 6 seqs 2.14.1.18.1.1 sf_1 6 seqs 2.14.1.18.1.1.5165 OTU 6 seqs prokMSA_id:21210 AY032934.1 Symploca sp. str. VP642c prokMSA_id:36962 AB039021.1 Symploca atlantica str. PCC 8002 prokMSA_id:45181 AY032932.1 Symploca sp. str. VP642a prokMSA_id:52817 AY032933.1 Symploca sp. str. VP642b prokMSA_id:53953 AF306497.1 Symploca sp. str. VP377 prokMSA_id:102676 AY430150.1 Symploca sp. HPC-3 2.14.1.19 Thermosynechococcus 7 seqs 2.14.1.19.1 Unclassified 7 seqs 2.14.1.19.1.1 sf_1 7 seqs 2.14.1.19.1.1.5012 OTU 1 seq prokMSA_id:62920 AF448081.1 Synechococcus sp. str. PCC 6312 2.14.1.19.1.1.5029 OTU 6 seqs prokMSA_id:3060 AF132772.1 Synechococcus sp. str. C1 prokMSA_id:3063 D83715.1 Synechococcus elongatus prokMSA_id:40063 AF216942.1 Synechococcus sp. PCC 6716 str. PCC6716 prokMSA_id:54965 AF216943.1 Synechococcus sp. PCC 6717 str. PCC6717 prokMSA_id:55947 NC_004113.1 Thermosynechococcus elongatus BP-1 prokMSA_id:107856 BA000039.2 Thermosynechococcus elongatus str. BP-1 2.14.1.2 Chroococcales 112 seqs 2.14.1.2.1 Unclassified 112 seqs 2.14.1.2.1.1 sf_1 112 seqs 2.14.1.2.1.1.5005 OTU 2 seqs prokMSA_id:3157 AJ000715.1 Cyanothece sp. str. PCC 7424 prokMSA_id:48404 AF132932.1 Cyanothece sp. str. PCC 7424 2.14.1.2.1.1.5011 OTU 81 seqs prokMSA_id:3112 U40337.1 "Microcystis aeruginosa" prokMSA_id:3113 U40338.1 "Microcystis aeruginosa" prokMSA_id:3114 D89031.1 Microcystis aeruginosa str. NIES87 prokMSA_id:3119 U40340.1 "Microcystis aeruginosa" prokMSA_id:3121 U40333.1 "Microcystis wesenbergii" prokMSA_id:3122 U40332.1 "Microcystis viridis" prokMSA_id:3130 AB012328.1 Microcystis viridis TAC17 prokMSA_id:3131 AB012331.1 Microcystis viridis TAC78 prokMSA_id:3132 AB012332.1 Microcystis aeruginosa TAC71 prokMSA_id:3133 AB012334.1 Microcystis wesenbergii TAC38 prokMSA_id:3134 AB012336.1 Microcystis novacekii TAC20 prokMSA_id:3135 D89033.1 Microcystis viridis str. NIES102 prokMSA_id:3162 U66194.1 Microcystis sp. str. KND9506 prokMSA_id:3163 AB012326.1 Microcystis sp. str. P.R.China 4A3 prokMSA_id:3164 AB012327.1 Microcystis sp. str. P.R.China 4B3 prokMSA_id:3165 AB012329.1 Microcystis sp. str. Thailand T1-4 prokMSA_id:3166 AB012330.1 Microcystis sp. str. Thailand T17-1 prokMSA_id:3167 AB012333.1 Microcystis aeruginosa TAC86 prokMSA_id:3168 AB012335.1 Microcystis wesenbergii TAC52 prokMSA_id:3169 AB012337.1 Microcystis novacekii TAC65 prokMSA_id:3170 AB012338.1 Microcystis ichthyoblabe TAC48 prokMSA_id:3171 AB012340.1 Microcystis aeruginosa TAC170 prokMSA_id:3177 AB012339.1 Microcystis ichthyoblabe prokMSA_id:3191 U03402.1 "Microcystis aeruginosa" prokMSA_id:3213 U40331.1 "Microcystis AWT139" prokMSA_id:3235 U40334.1 "Microcystis wesenbergii" prokMSA_id:3236 D89032.1 Microcystis aeruginosa str. NIES98 prokMSA_id:3237 D89034.1 Microcystis wesenbergii str. NIES111 prokMSA_id:3241 U40339.1 "Microcystis aeruginosa" prokMSA_id:16345 AF139316.1 Microcystis aeruginosa str. UWOCC C4 prokMSA_id:16837 AF139312.1 Microcystis sp. 'UWOCC BauldE' str. UWOCC BauldE 'UWOCC prokMSA_id:17617 AF139318.1 Microcystis aeruginosa str. UWOCC M4 prokMSA_id:17755 AF139322.1 Microcystis aeruginosa str. UWOCC MR-B prokMSA_id:18186 AF139311.1 Microcystis sp. str. UWOCC Q prokMSA_id:18594 AF139304.1 Microcystis aeruginosa str. UWOCC AubB1 prokMSA_id:18622 AF139317.1 Microcystis aeruginosa str. UWOCC RID-1 prokMSA_id:19980 AF139328.1 Microcystis flos-aquae str. UWOCC C2 prokMSA_id:21664 AF139305.1 Microcystis aeruginosa str. UWOCC Bauld5A prokMSA_id:24627 AF139325.1 Microcystis aeruginosa str. UWOCC S-15-b prokMSA_id:25608 AB035550.1 Microcystis ichthyoblabe str. TC24 prokMSA_id:26154 AJ133175.1 Microcystis sp. str. 269 prokMSA_id:26766 AF139303.1 Microcystis aeruginosa str. UWOCC AK-1 prokMSA_id:27566 AF139309.1 Microcystis sp. str. UWOCC K prokMSA_id:27606 AB035549.1 Microcystis aeruginosa str. NC7 prokMSA_id:27662 AF139314.1 Microcystis aeruginosa str. UWOCC P3 prokMSA_id:28391 AB035553.1 Microcystis wesenbergii str. TC7 prokMSA_id:28651 AF139315.1 Microcystis aeruginosa str. UWOCC C1 prokMSA_id:29068 AB035551.1 Microcystis novacekii str. BC18 prokMSA_id:29230 AF139326.1 Microcystis aeruginosa str. UWOCC E7 prokMSA_id:29257 AF139323.1 Microcystis aeruginosa str. UWOCC MR-C prokMSA_id:34524 AF139319.1 Microcystis aeruginosa str. UWOCC C5 prokMSA_id:35129 AF139329.1 Microcystis flos-aquae str. UWOCC C3 prokMSA_id:35467 AF139301.1 Microcystis aeruginosa str. UWOCC 84/1 prokMSA_id:37777 AJ133173.1 Microcystis sp. str. GL280641 prokMSA_id:37828 AF139302.1 Microcystis aeruginosa str. UWOCC AK(GV-) prokMSA_id:38719 AF139310.1 Microcystis sp. 'UWOCC MSU28-1' str. UWOCC MSU28-1 'UWOCC prokMSA_id:39102 AF139294.1 Microcystis aeruginosa str. UWOCC 017 prokMSA_id:39573 AF139300.1 Microcystis aeruginosa str. PCC 7820 prokMSA_id:39760 AF139308.1 Microcystis sp. str. UWOCC F prokMSA_id:40291 AF139327.1 Microcystis flos-aquae str. UWOCC N prokMSA_id:40536 AF139320.1 Microcystis aeruginosa str. UWOCC MR- prokMSA_id:40548 AF139293.1 Microcystis aeruginosa str. UWOCC 006 prokMSA_id:40647 AF139321.1 Microcystis aeruginosa str. UWOCC MR-B prokMSA_id:41065 AF139313.1 Microcystis aeruginosa str. UWOCC MSU28-2 prokMSA_id:42696 AJ133174.1 Microcystis wesenbergii subsp. NIES-104 str. NIES 104 NIES-104 prokMSA_id:43227 AJ133172.1 Microcystis sp. str. 199 prokMSA_id:43518 AF139306.1 Microcystis sp. 'UWOCC BauldB' str. UWOCC BauldB 'UWOCC prokMSA_id:45553 AB035552.1 Microcystis viridis str. CC9 prokMSA_id:47759 AF139299.1 Microcystis aeruginosa str. PCC 7806 prokMSA_id:48796 AF139295.1 Microcystis aeruginosa str. UWOCC 019 prokMSA_id:49423 AF139297.1 Microcystis aeruginosa str. UWOCC 024 prokMSA_id:49574 AF139307.1 Microcystis sp. 'UWOCC CBS' str. UWOCC CBS 'UWOCC prokMSA_id:50935 AF139296.1 Microcystis aeruginosa str. UWOCC 023 prokMSA_id:51805 AF139324.1 Microcystis aeruginosa str. UWOCC MR-D prokMSA_id:52503 AF139292.1 Microcystis aeruginosa str. UWOCC 001 prokMSA_id:52726 AF139298.1 Microcystis aeruginosa str. UWOCC 026 prokMSA_id:60879 AY135894.1 clone SG2-6 prokMSA_id:70007 AJ133170.1 Microcystis sp. str. 130 prokMSA_id:71454 AJ133171.1 Microcystis aeruginosa str. PCC 7941 prokMSA_id:100393 AY439281.1 Microcystis sp. str. 205 prokMSA_id:100552 AY439282.1 Microcystis sp. str. GL260735 2.14.1.2.1.1.5031 OTU 4 seqs prokMSA_id:67712 AB067581.1 Cyanothece sp. str. SKTU126 prokMSA_id:67714 AB067580.1 Gloeothece sp. str. KO68DGA prokMSA_id:67719 AB067577.1 Gloeothece sp. str. KO11DG prokMSA_id:67720 AB067576.1 Gloeothece sp. str. SK40 2.14.1.2.1.1.5116 OTU 3 seqs prokMSA_id:3116 X94705.1 Merismopedia glauca str. B1448-1 prokMSA_id:27910 AB041936.1 Synechocystis sp. PCC 6702 str. PCC6702 prokMSA_id:82137 AY224195.1 Synechocystis sp. str. PCC 6803 2.14.1.2.1.1.5127 OTU 1 seq prokMSA_id:17093 AB039000.1 Gloeocapsa sp. str. PCC 73106 2.14.1.2.1.1.5152 OTU 2 seqs prokMSA_id:28876 AB039008.1 Stanieria cyanosphaera str. PCC 7437 prokMSA_id:48280 AF132931.1 Stanieria cyanosphaera str. PCC 7437 2.14.1.2.1.1.5167 OTU 5 seqs prokMSA_id:3158 AF132771.1 Cyanothece sp. str. ATCC 51142 prokMSA_id:27671 AF193247.1 Climacodium frauenfeldianum symbiont prokMSA_id:55668 AB067575.1 Gloeocapsa sp. str. KO38CU6 prokMSA_id:67713 AB067579.1 Gloeocapsa sp. str. KO30D1 prokMSA_id:67715 AB067578.1 Gloeocapsa sp. str. KO20B5 2.14.1.2.1.1.5202 OTU 1 seq prokMSA_id:3240 X78680.1 "Gloeothece membranacea" 2.14.1.2.1.1.5207 OTU 8 seqs prokMSA_id:3124 AB015059.1 Synechococcus sp. str. PCC7003 prokMSA_id:3125 AB003164.1 Oscillatoria rosea str. M-220 prokMSA_id:3126 AB015060.1 Synechococcus sp. str. PCC7117 prokMSA_id:3127 AB015061.1 Synechococcus sp. str. PCC73109 prokMSA_id:17081 AJ000716.1 Synechococcus sp. PCC 7002 prokMSA_id:42888 D88289.1 Synechococcus sp. str. PCC7002 prokMSA_id:55776 AF448076.1 Synechococcus sp. str. PCC 8807 prokMSA_id:71525 AF513475.1 Synechococcus sp. str. PH40 2.14.1.2.1.1.5218 OTU 1 seq prokMSA_id:49254 AB039007.1 Pleurocapsa sp. str. PCC 7327 2.14.1.2.1.1.5219 OTU 3 seqs prokMSA_id:62922 AF448075.1 Synechococcus sp. str. HOG prokMSA_id:62924 AF448074.1 Synechococcus sp. str. UH7 prokMSA_id:62925 AF448073.1 Synechococcus sp. str. T71 2.14.1.2.1.1.5238 OTU 1 seq prokMSA_id:35028 AF296873.1 Cyanothece sp. str. PCC 8801 2.14.1.3 Chroococcidiopsis 7 seqs 2.14.1.3.1 Unclassified 7 seqs 2.14.1.3.1.1 sf_1 7 seqs 2.14.1.3.1.1.5132 OTU 5 seqs prokMSA_id:23035 AJ344558.1 Chroococcidiopsis cubana str. SAG 39.79; PCC 7326 prokMSA_id:34564 AJ344553.1 Chroococcidiopsis sp. BB82.3 str. SAG 2024 BB82.3 prokMSA_id:41207 AB039005.1 Chroococcidiopsis thermalis str. PCC 7203 prokMSA_id:72915 AJ344554.1 Chroococcidiopsis sp. BB84.1 str. SAG 2025 BB84.1 prokMSA_id:80235 AB074506.1 Chroococcidiopsis sp. str. PCC 7431 2.14.1.3.1.1.5138 OTU 2 seqs prokMSA_id:35765 AJ344555.1 Chroococcidiopsis sp. BB96.1 str. SAG 2026 BB96.1 prokMSA_id:71326 AJ344552.1 Chroococcidiopsis sp. BB79.2 str. SAG 2023 BB79.2 2.14.1.4 Geitlerinema 5 seqs 2.14.1.4.1 Unclassified 5 seqs 2.14.1.4.1.1 sf_1 5 seqs 2.14.1.4.1.1.4999 OTU 1 seq prokMSA_id:25443 AB039010.1 Geitlerinema sp. str. PCC 7105 2.14.1.4.1.1.5013 OTU 4 seqs prokMSA_id:24354 AF230967.1 Oscillatoria 3 str. SLR7 prokMSA_id:33445 AF218376.1 Oscillatoria sp. UTCC 487 str. UTCC487 prokMSA_id:37748 AF268490.1 Oscillatoria cf. laetevirens str. Baja-Osc-1 prokMSA_id:43803 AF230966.1 Oscillatoria 1 str. SLR2 2.14.1.5 Leptolyngbya 8 seqs 2.14.1.5.1 Unclassified 8 seqs 2.14.1.5.1.1 sf_1 8 seqs 2.14.1.5.1.1.5157 OTU 8 seqs prokMSA_id:3280 X84808.1 Leptolyngbya foveolarum prokMSA_id:3281 AF132793.1 Leptolyngbya boryana str. UTEX 485 prokMSA_id:3282 AB003163.1 Oscillatoria sp. str. M-117 prokMSA_id:3283 AB003169.1 Phormidium sp. str. M-99 prokMSA_id:39175 AF218372.1 Phormidium tenue str. UTCC473 prokMSA_id:41034 AF337652.1 Phormidium tenue str. KCTC AG10158 prokMSA_id:43289 AF218368.1 Phormidium molle str. UTCC77 prokMSA_id:45010 AF337651.1 Phormidium pachydematicum str. KCTC AG10164 2.14.1.6 Limnothrix 1 seq 2.14.1.6.1 Unclassified 1 seq 2.14.1.6.1.1 sf_1 1 seq 2.14.1.6.1.1.5048 OTU 1 seq prokMSA_id:17697 AF212922.1 Planktothrix sp. str. FP1 2.14.1.7 Lyngbya2 3 seqs 2.14.1.7.1 Unclassified 3 seqs 2.14.1.7.1.1 sf_1 3 seqs 2.14.1.7.1.1.5162 OTU 3 seqs prokMSA_id:22139 AY049752.1 Lyngbya sp. str. NIH309 prokMSA_id:35119 AY049751.1 Lyngbya sp. str. VP417b prokMSA_id:46480 AY049750.1 Lyngbya sp. str. VP417a 2.14.1.8 Nostocales 187 seqs 2.14.1.8.1 Unclassified 187 seqs 2.14.1.8.1.1 sf_1 187 seqs 2.14.1.8.1.1.5004 OTU 6 seqs prokMSA_id:24719 AF317628.1 Anabaena flos-aquae str. AWQC 264A prokMSA_id:42168 AF247592.1 Anabaena cylindrica PCC 7122 str. NIES19 prokMSA_id:103356 AY701557.1 Anabaena kisseleviana str. NIES74 prokMSA_id:103502 AY701558.1 Anabaena kisseleviana str. TAC34 prokMSA_id:103881 AY701573.1 Anabaena flos-aquae str. NIES73 prokMSA_id:108010 AJ630458.1 Anabaena augstumalis 'SCHMIDKE JAHNKE/4a' str. SCMIDKE JAHNKE/4a 2.14.1.8.1.1.5028 OTU 5 seqs prokMSA_id:3101 AF067818.1 Cylindrospermopsis raciborskii Solomon Dam Palm Island Queensland prokMSA_id:3102 AF067819.1 Cylindrospermopsis raciborskii Solomon Dam Palm Island Queensland prokMSA_id:56040 AF516727.1 Cylindrospermopsis raciborskii str. Aqc prokMSA_id:60833 AF516732.1 Cylindrospermopsis raciborskii str. 05E prokMSA_id:72636 AF516725.1 Cylindrospermopsis raciborskii str. LJ 2.14.1.8.1.1.5047 OTU 14 seqs prokMSA_id:19102 AF247578.1 Anabaena circinalis str. AWQC307C prokMSA_id:19178 AF247586.1 Anabaena circinalis str. AWT205B prokMSA_id:19855 AF247589.1 Anabaena circinalis str. AWQC131C prokMSA_id:21891 AF247585.1 Anabaena circinalis str. AWT204A prokMSA_id:23978 AF247573.1 Anabaena circinalis str. AWQC150A prokMSA_id:30153 AF247575.1 Anabaena circinalis str. AWQC271C prokMSA_id:36205 AF247591.1 Anabaena affinis str. NIES40 prokMSA_id:39090 AF247587.1 Anabaena circinalis str. AWT02 prokMSA_id:41035 AF247588.1 Anabaena circinalis str. NIES41 prokMSA_id:42825 AF247576.1 Anabaena circinalis str. AWQC279B prokMSA_id:45448 AF247583.1 Anabaena circinalis str. AWQC344B prokMSA_id:49853 AF247571.1 Anabaena circinalis str. AWQC118C prokMSA_id:50849 AF247580.1 Anabaena circinalis str. AWQC323B prokMSA_id:52583 AF247574.1 Anabaena circinalis str. AWQC173A 2.14.1.8.1.1.5057 OTU 104 seqs prokMSA_id:3100 AJ006281.2 cyanobacterium LD8 clone LD8 prokMSA_id:3103 AF027655.1 Nostoc punctiforme prokMSA_id:3105 AF062637.1 Nostoc sp. str. GSV224 prokMSA_id:3106 AF062638.1 Nostoc sp. str. ATCC 53789 prokMSA_id:3107 AF027653.1 Nostoc sp. str. TDI#AR94 prokMSA_id:3108 AF027654.1 Nostoc sp. PCC 9709 str. PCC9709 prokMSA_id:19807 AB042859.1 Anabaena circinalis str. NIES-41 prokMSA_id:20514 AF247581.1 Anabaena circinalis str. AWQC331C prokMSA_id:20681 AJ293123.1 Aphanizomenon flos-aquae var. klebahnii str. 218 var. prokMSA_id:20833 AJ293105.1 Anabaena solitaria str. 82 prokMSA_id:23120 AJ293131.1 Aphanizomenon flos-aquae str. NIES81 prokMSA_id:23731 AF247579.1 Anabaena circinalis str. AWQC310F prokMSA_id:24012 AJ133161.1 Nostoc sp. str. 152 prokMSA_id:28360 AF317632.1 Aphanizomenon flos-aquae str. NIES81 prokMSA_id:30002 AF247596.1 Anabaena flos-aquae str. NRC44-1 prokMSA_id:31160 AJ293127.1 Aphanizomenon gracile str. PMC9402 prokMSA_id:31378 AF334690.1 Spirirestis rafaelensis str. SRS6 prokMSA_id:34443 AJ245457.1 Aphanizomenon sp. 'BC-Aph 9601' BC-Aph 9601 'BC-Aph prokMSA_id:35407 AF247582.1 Anabaena circinalis str. AWQC332H prokMSA_id:36941 AF317630.1 Nostoc sp. str. AWT 203 prokMSA_id:37515 AJ293106.1 Anabaena sp. str. 299 prokMSA_id:38208 AF247590.1 Anabaena flos-aquae str. AWQC112D prokMSA_id:40148 AJ293122.1 Aphanizomenon flos-aquae var. klebahnii str. 83 var. prokMSA_id:40671 AJ293112.1 Anabaena crassa str. 215 prokMSA_id:41609 AY038032.1 Anabaena flos-aquae str. PCC 9302 prokMSA_id:42144 AF247594.1 Anabaena solitaria str. NIES80 prokMSA_id:43523 AJ293118.1 Anabaena spiroides str. PMC9702 prokMSA_id:43551 AJ293108.1 Anabaena planctonica str. 71 prokMSA_id:43633 AJ293117.1 Anabaena cf. scheremetievi str. PMC9701 prokMSA_id:45965 AJ133160.1 Anabaena sp. str. A277 prokMSA_id:46184 AB047104.1 Anabaena spiroides str. NIES76 prokMSA_id:48627 AF247572.1 Anabaena circinalis str. AWQC134C prokMSA_id:48640 AF247597.1 Anabaena flos-aquae str. NRC525-17 prokMSA_id:49357 AF334691.1 Spirirestis rafaelensis str. SRS6 prokMSA_id:53702 AJ293128.1 Aphanizomenon cf. flos-aquae str. PMC9501 prokMSA_id:54292 AJ293113.1 Anabaena lemmermannii str. 256 prokMSA_id:55937 AF506252.1 Nostoc sp. 'Nephroma parile cyanobiont 27' 'Nephroma prokMSA_id:56511 AF506240.1 Nostoc sp. 'Peltigera venosa cyanobiont 15' 'Peltigera prokMSA_id:56651 AF425995.1 Aphanizomenon sp. str. NH-5 prokMSA_id:58838 AF506265.1 Nostoc sp. 'Nephroma resupinatum cyanobiont 40' 'Nephroma prokMSA_id:58839 AF506263.1 Nostoc sp. 'Nephroma resupinatum cyanobiont 38' prokMSA_id:58845 AF506258.1 Nostoc sp. 'Nephroma helveticum cyanobiont 33' 'Nephroma prokMSA_id:58852 AF506251.1 Nostoc sp. 'Nephroma parile cyanobiont 26' 'Nephroma prokMSA_id:58853 AF506246.1 Nostoc sp. 'muscicolous cyanobiont 21' prokMSA_id:58854 AF506247.1 Nostoc sp. 'Peltigera praetextata cyanobiont 22' 'Peltigera prokMSA_id:58857 AF506244.1 Nostoc sp. 'Lobaria hallii cyanobiont 19' prokMSA_id:58858 AF506243.1 Nostoc sp. 'Peltigera pruinosa cyanobiont 18' 'Peltigera prokMSA_id:58861 AF506239.1 Nostoc sp. 'Peltigera pruinosa cyanobiont 14' 'Peltigera prokMSA_id:63340 AB088405.2 Nostoc commune str. M-13 prokMSA_id:69813 AJ133156.1 Anabaena circinalis str. 90 prokMSA_id:70327 AF334694.1 Tolypothrix distorta str. SEV2-5-Ca prokMSA_id:71028 AJ293104.1 Anabaena lemmermannii str. 202A2 prokMSA_id:71116 AJ293121.1 Aphanizomenon sp. str. 326 prokMSA_id:71529 AF506255.1 Nostoc sp. 'Parmeliella triptophylla cyanobiont 30' 'Parmeliella prokMSA_id:71610 AJ133155.1 Aphanizomenon flos-aquae str. TR183 prokMSA_id:71971 AF506261.1 Nostoc sp. 'Lobaria pulmonaria cyanobiont 36' prokMSA_id:72914 AJ133159.1 Anabaena flos-aquae 202A1 str. A202A1 prokMSA_id:72921 AJ293125.1 Aphanizomenon cf. gracile str. 271 prokMSA_id:73017 AJ293126.1 Aphanizomenon flos-aquae str. PMC9401 prokMSA_id:73230 AF268008.1 Nodularia spumigena str. NSLA02A4 prokMSA_id:73276 AJ133157.1 Anabaena lemmermannii str. 66A prokMSA_id:73348 AF506259.1 Nostoc sp. 'Lobaria cyanobiont 34' prokMSA_id:74202 AJ133153.1 Aphanizomenon sp. str. 202 prokMSA_id:74222 AF506262.1 Nostoc sp. 'Nephroma helveticum cyanobiont 37' 'Nephroma prokMSA_id:74246 AJ293119.1 Anabaena cf. cylindrica str. PMC9705 prokMSA_id:74363 AJ293130.1 Aphanizomenon flos-aquae str. PMC9707 prokMSA_id:74386 AJ133158.1 Anabaena flos-aquae NIVA-CYA 83/1 str. CYA83/1 NIVA-CYA prokMSA_id:77866 AB088375.2 Nostoc commune str. KU002 prokMSA_id:80843 AB074503.1 Nostoc linckia str. IAM M-251 prokMSA_id:82666 AB093488.1 Anabaena planctonica NIES-810 str. NIES 810 NIES-810 prokMSA_id:83183 AB094352.2 Nostoc commune prokMSA_id:86833 AY112695.1 Nostoc sp. str. VI.5 prokMSA_id:88320 AY196082.1 Aphanizomenon flos-aquae 'Aph Zayi' str. Aph Zayi prokMSA_id:88923 AY196088.1 Aphanizomenon issatschenkoi str. LEMCYA31 prokMSA_id:89617 AY196085.1 Aphanizomenon flos-aquae 'Aph Ku' str. Aph Ku prokMSA_id:90379 AY196083.1 Aphanizomenon flos-aquae 'Aph Inba' str. Aph Inba prokMSA_id:96618 AY422694.1 Nostoc sp. 'Bad Sachsa' Bad Sachsa prokMSA_id:99364 AY328898.1 Nostoc sp. str. 117.8.2 prokMSA_id:99853 AY566855.1 Nostoc sp. str. IO-102-I prokMSA_id:102101 AY742449.1 Nostoc sp. str. 8963 prokMSA_id:102224 AB101003.1 Nostoc commune prokMSA_id:103452 AY701570.1 Anabaena mendotae str. TAC437 prokMSA_id:103587 AY701571.1 Anabaena lemmermannii str. Ana Dalai prokMSA_id:105852 AY742451.1 Nostoc sp. str. PCC 9229 prokMSA_id:106152 AY742453.1 Nostoc sp. str. PCC 9305 prokMSA_id:107965 AJ630414.1 Anabaena cf. cylindrica str. XP6B prokMSA_id:107969 AJ630419.1 Anabaena flos-aquae str. 1tu31s11 prokMSA_id:107970 AJ630420.1 Anabaena flos-aquae str. 0tu33s15 prokMSA_id:107971 AJ630421.1 Anabaena flos-aquae str. 0tu33s2a prokMSA_id:107972 AJ630423.1 Anabaena flos-aquae str. 1tu35s12 prokMSA_id:107973 AJ630422.1 Anabaena flos-aquae str. 1tu30s4 prokMSA_id:107975 AJ630424.1 Anabaena lemmermannii str. 1tu32s11 prokMSA_id:107987 AJ630437.1 Anabaena sp. str. 1tu34s7 prokMSA_id:107988 AJ630438.1 Anabaena sp. str. 0tu37s9 prokMSA_id:107990 AJ630439.1 Anabaena sp. str. 0tu39s7 prokMSA_id:107997 AJ630447.1 Nostoc calcicola str. III prokMSA_id:107998 AJ630448.1 Nostoc calcicola str. VI prokMSA_id:108000 AJ630449.1 Nostoc edaphicum str. X prokMSA_id:108002 AJ630453.1 Nostoc sp. str. 1tu14s8 prokMSA_id:109602 AB113665.1 Nostoc commune prokMSA_id:110114 AJ781144.1 Nodularia sphaerocarpa str. Fae19 prokMSA_id:110216 AB098071.1 Nostoc commune str. SO-42 prokMSA_id:110233 AB113666.1 Nostoc commune prokMSA_id:110881 AJ781148.1 Nodularia sphaerocarpa str. UTEX B 2093 2.14.1.8.1.1.5072 OTU 23 seqs prokMSA_id:3091 AJ224447.1 Nodularia sp. BCNOD9427 prokMSA_id:19362 AJ133181.1 Nodularia sphaerocarpa PCC 7804 str. PCC7804 PCC prokMSA_id:20056 AF268019.1 Nodularia harveyana str. PCC7804 prokMSA_id:24739 AF268021.1 Nodularia harveyana str. UTEX-B2093 prokMSA_id:24971 AF268011.1 Nodularia spumigena str. NSOR12 prokMSA_id:32123 AF268015.1 Nodularia spumigena str. NSGL02A10 prokMSA_id:34133 AF268014.1 Nodularia spumigena str. NSOR10 prokMSA_id:34506 AF268012.1 Nodularia spumigena str. NSBL05 prokMSA_id:35491 AF268009.1 Nodularia spumigena str. NSLA01 prokMSA_id:37800 AF268006.2 Nodularia spumigena str. L575 prokMSA_id:40979 AF268010.1 Nodularia spumigena str. NSOR04 prokMSA_id:44512 AF268007.1 Nodularia spumigena str. NSPH02 prokMSA_id:46466 AB039002.1 Nodularia spumigena str. PCC 73104 prokMSA_id:46957 AF268022.1 Nodularia spumigena str. UTEX-B2092 prokMSA_id:51799 AF268023.1 Nodularia spumigena str. PCC73104 prokMSA_id:52046 AF268005.1 Nodularia spumigena str. HEM prokMSA_id:70323 AF268004.1 Nodularia spumigena str. BY1 prokMSA_id:71066 AJ133177.1 Nodularia baltica str. BY1 prokMSA_id:71521 AJ133178.1 Nodularia spumigena str. GR8b prokMSA_id:71803 AJ133180.1 Nodularia spumigena str. NSOR-12 prokMSA_id:72177 AJ133179.1 Nodularia spumigena str. NSPI-05 prokMSA_id:72893 AJ133182.1 Nodularia sphaerocarpa str. UP16f prokMSA_id:74014 AF268017.1 Nodularia spumigena str. NSPH05A14 2.14.1.8.1.1.5174 OTU 11 seqs prokMSA_id:3099 AF092504.1 Cylindrospermopsis raciborskii str. AWT205 prokMSA_id:60818 AF516746.1 Cylindrospermopsis raciborskii str. Florida I prokMSA_id:60821 AF516744.1 Cylindrospermopsis raciborskii str. Florida G prokMSA_id:60822 AF516745.1 Cylindrospermopsis raciborskii str. Florida F prokMSA_id:60823 AF516742.1 Cylindrospermopsis raciborskii str. Caia prokMSA_id:60824 AF516743.1 Cylindrospermopsis raciborskii str. Florida D prokMSA_id:60826 AF516741.1 Cylindrospermopsis raciborskii str. 4799 prokMSA_id:60828 AF516736.1 Cylindrospermopsis raciborskii str. Germany 2 prokMSA_id:60831 AF516735.1 Cylindrospermopsis raciborskii str. Germany 1 prokMSA_id:60834 AF516731.1 Cylindrospermopsis raciborskii str. 23B prokMSA_id:60840 AF516728.1 Cylindrospermopsis raciborskii str. 09A 2.14.1.8.1.1.5175 OTU 6 seqs prokMSA_id:60830 AF516734.1 Cylindrospermopsis raciborskii str. Brazil 2 prokMSA_id:60832 AF516733.1 Cylindrospermopsis raciborskii str. Brazil 1 prokMSA_id:60838 AF516729.1 Cylindrospermopsis raciborskii str. 24C prokMSA_id:60843 AF516724.1 Cylindrospermopsis raciborskii str. Goon prokMSA_id:71065 AF516726.1 Cylindrospermopsis raciborskii str. Mk prokMSA_id:106371 AB115481.1 Cylindrospermopsis raciborskii str. DMKU51016 2.14.1.8.1.1.5191 OTU 5 seqs prokMSA_id:28247 AF268020.1 Nodularia harveyana str. CDAC1983/300 prokMSA_id:29506 AY038036.1 Cyanospira rippkae str. PCC 9501 prokMSA_id:36477 AF160256.1 Anabaena bergii str. 283A prokMSA_id:45521 AY038033.1 Anabaenopsis sp. str. PCC 9215 prokMSA_id:60819 AF516747.1 Anabaenopsis sp. str. 1A 2.14.1.8.1.1.5199 OTU 13 seqs prokMSA_id:3092 X59559.1 "Nostoc muscorum" prokMSA_id:3095 AB016520.1 Anabaena variabilis str. IAM M-3 prokMSA_id:28828 AF247595.1 Anabaenopsis circularis str. NIES21 prokMSA_id:29130 AF247593.1 Anabaena variabilis str. NIES23 prokMSA_id:50880 AF317631.1 Nostoc sp. str. PCC 7120 prokMSA_id:53707 NC_003272.1 Nostoc sp. PCC 7120 prokMSA_id:79820 AB074502.1 Anabaena variabilis prokMSA_id:80820 AB074504.1 Calothrix brevissima str. IAM M-249 prokMSA_id:81799 AY218829.1 Anabaena flos-aquae str. UTCC 64 prokMSA_id:83776 AB093486.1 Tolypothrix sp. str. IAM M-259 prokMSA_id:90192 AB085687.1 Nostoc sp. str. HK-01 prokMSA_id:107877 BA000019.2 Nostoc sp. PCC 7120 str. PCC7120 prokMSA_id:111394 AB187507.1 Nostoc sp. str. YK-01 2.14.1.9 Oscillatoriales 71 seqs 2.14.1.9.1 Unclassified 71 seqs 2.14.1.9.1.1 sf_1 71 seqs 2.14.1.9.1.1.5017 OTU 1 seq prokMSA_id:62923 AF448077.1 Synechococcus sp. str. PCC 8806 2.14.1.9.1.1.5049 OTU 1 seq prokMSA_id:59109 AF420444.1 Oscillatoria spongeliae str. 520bg 2.14.1.9.1.1.5052 OTU 1 seq prokMSA_id:3231 AF132782.1 Cyanobacterium stanieri str. PCC 7202 2.14.1.9.1.1.5056 OTU 28 seqs prokMSA_id:3066 X84811.1 Planktothrix agardhii str. CYA 18 prokMSA_id:3071 AJ132250.1 Planktothrix rubescens str. BC-Pla 9401 prokMSA_id:3072 AJ132251.1 Planktothrix rubescens str. BC-Pla 9303 prokMSA_id:16819 AJ133167.1 Oscillatoria sp. str. 49 prokMSA_id:56079 AB045900.2 Planktothrix agardhii str. CCAP 1459/21 prokMSA_id:58440 AB045958.1 Planktothrix agardhii str. NIES 596 prokMSA_id:58449 AB045947.1 Planktothrix agardhii str. NIVA CYA 88/3 prokMSA_id:58453 AB045945.1 Planktothrix rubescens str. NIVA CYA 85 prokMSA_id:58454 AB045944.1 Planktothrix rubescens str. NIVA CYA 73 prokMSA_id:58457 AB045939.1 Planktothrix agardhii str. NIVA CYA 59 prokMSA_id:58460 AB045938.1 Planktothrix agardhii str. NIVA CYA 56/3 prokMSA_id:58461 AB045935.1 Planktothrix agardhii str. NIVA CYA 34 prokMSA_id:58462 AB045936.1 Planktothrix rubescens str. NIVA CYA 35 prokMSA_id:58463 AB045934.1 Planktothrix rubescens str. NIVA CYA 320 prokMSA_id:58464 AB045933.1 Planktothrix agardhii str. NIVA CYA 313 prokMSA_id:58465 AB045932.1 Planktothrix agardhii str. NIVA CYA 30 prokMSA_id:58466 AB045931.1 Planktothrix agardhii str. NIVA CYA 29 prokMSA_id:58468 AB045928.1 Planktothrix agardhii str. NIVA CYA 229 prokMSA_id:58473 AB045923.1 Planktothrix agardhii str. NIVA CYA 15 prokMSA_id:58475 AB045922.1 Planktothrix pseudagardhii str. NIVA CYA 153 prokMSA_id:58477 AB045921.1 Planktothrix rubescens str. NIVA CYA 151 prokMSA_id:58480 AB045917.1 Planktothrix rubescens str. NIVA CYA 129 prokMSA_id:58482 AB045915.1 Planktothrix agardhii str. NIVA CYA 127 prokMSA_id:58487 AB045910.1 Planktothrix agardhii str. NIVA CYA 10 prokMSA_id:58497 AB045896.1 Planktothrix agardhii str. CCAP 1459/11A prokMSA_id:72966 AJ133185.1 Planktothrix sp. str. 2 prokMSA_id:73793 AJ133168.1 Planktothrix sp. NIVA-CYA 127 str. CYA127 prokMSA_id:80934 AB074507.1 Planktothrix agardhii str. IAM M-244 2.14.1.9.1.1.5077 OTU 1 seq prokMSA_id:58491 AB045906.1 Lyngbya var. hieronymusii str. CN4-3 2.14.1.9.1.1.5078 OTU 8 seqs prokMSA_id:55562 AB045966.1 Planktothrix pseudagardhii str. T19-6'-8 prokMSA_id:55697 AB045971.1 Planktothrix mougeotii str. TR1-5 prokMSA_id:56026 AB045965.1 Planktothrix pseudagardhii str. T19-6'-6 prokMSA_id:58430 AB045972.1 Planktothrix mougeotii str. TR2-4 prokMSA_id:58431 AB045970.1 Planktothrix mougeotii str. TK5-1 prokMSA_id:58432 AB045968.1 Planktothrix pseudagardhii str. T1-8-4 prokMSA_id:58433 AB045969.1 Planktothrix mougeotii str. TK4-5 prokMSA_id:58490 AB045907.1 Planktothrix pseudagardhii str. CW4-5 2.14.1.9.1.1.5081 OTU 1 seq prokMSA_id:29085 AB039001.1 Synechocystis sp. PCC 6308 2.14.1.9.1.1.5142 OTU 1 seq prokMSA_id:35188 AF218377.1 Lyngbya sp. UTCC 296 str. UTCC296 2.14.1.9.1.1.5159 OTU 6 seqs prokMSA_id:20614 AF263334.1 Oscillatoria sp. str. Ant-G17 prokMSA_id:26990 AB039014.1 Oscillatoria acuminata str. PCC 6304 prokMSA_id:32704 AF263337.1 Oscillatoria sp. str. Ant-Salt prokMSA_id:37596 AF263332.1 Phormidium sp. str. Ant-Brack-3 prokMSA_id:49230 AF218375.1 Oscillatoria priestleyii str. UTCC476 prokMSA_id:51758 AJ431339.1 Greenland:Ikka Fjord clone 2.14.1.9.1.1.5172 OTU 1 seq prokMSA_id:69683 AB058249.1 Cyanobacterium sp. str. MBIC10216 2.14.1.9.1.1.5184 OTU 4 seqs prokMSA_id:35094 AF260510.2 Arthrospira fusiformis str. Ethi-B2 prokMSA_id:69038 AF329392.1 Arthrospira sp. str. FACHB438 prokMSA_id:69039 AF329391.1 Arthrospira sp. str. FACHB439 prokMSA_id:80667 AB074508.1 Spirulina platensis 2.14.1.9.1.1.5189 OTU 5 seqs prokMSA_id:34024 AF284803.1 Microcoleus vaginatus str. PCC 9802; MPI 96MVO1 prokMSA_id:47726 AB039015.1 Oscillatoria sancta str. PCC 7515 prokMSA_id:74791 AF132933.1 Oscillatoria sancta str. PCC 7515 prokMSA_id:80595 AB074509.1 Oscillatoria sp. str. PCC 7112 prokMSA_id:102827 AB045897.1 Tychonema bourrellyi str. CCAP 1459/11B 2.14.1.9.1.1.5200 OTU 8 seqs prokMSA_id:3048 X70767.1 Trichodesmium sp. NIBB 1067 prokMSA_id:3050 AF091322.1 Trichodesmium hildebrandtii str. puff prokMSA_id:3051 AF091321.1 Trichodesmium thiebautii str. puff prokMSA_id:3052 AF013030.1 Trichodesmium erythraeum prokMSA_id:3053 AF013029.1 Trichodesmium tenue prokMSA_id:3054 AF013028.1 Trichodesmium contortum prokMSA_id:3055 AF013027.1 Trichodesmium thiebautii prokMSA_id:59107 AF518770.1 Trichodesmium havanum str. F34-5 2.14.1.9.1.1.5215 OTU 4 seqs prokMSA_id:3064 AJ000714.1 Lyngbya aestuarii str. PCC 7419 prokMSA_id:40937 AB039013.1 Lyngbya aestuarii str. PCC 7419 prokMSA_id:43562 AF337650.1 Lyngbya hieronymusii str. KCTC AG10199 prokMSA_id:106421 AY575933.1 Phormidium cf. terebriformis str. AB2002/07 2.14.1.9.1.1.5230 OTU 1 seq prokMSA_id:51024 AF218373.1 Phormidium subfuscum str. UTCC474 2.14.2 Unclassified 155 seqs 2.14.2.1 Unclassified 155 seqs 2.14.2.1.1 Unclassified 155 seqs 2.14.2.1.1.1 sf_5 147 seqs 2.14.2.1.1.1.270 OTU 4 seqs prokMSA_id:26455 AJ295559.1 rape rhizosphere clone wr0198 prokMSA_id:63113 AY093470.1 deep marine sediment clone MB-B2-105 prokMSA_id:89473 AY328558.1 drinking water system simulator clone HOClCi9 prokMSA_id:98258 AY375144.1 deep sea sediment clone D5 2.14.2.1.1.1.471 OTU 1 seq prokMSA_id:46527 AF280849.1 bioreactor clone mle1-12 2.14.2.1.1.1.4991 OTU 2 seqs prokMSA_id:36979 AF263344.1 Oscillatoria sp. str. J-24-Osc prokMSA_id:71468 AF317508.1 Oscillatoria sp. str. OH25 2.14.2.1.1.1.4992 OTU 2 seqs prokMSA_id:3159 AF132773.1 Synechococcus sp. str. C9 prokMSA_id:47451 AF445654.1 travertine hot spring clone SM1B04 2.14.2.1.1.1.4993 OTU 1 seq prokMSA_id:38561 AJ133106.1 Oscillatoria sp 2.14.2.1.1.1.4995 OTU 3 seqs prokMSA_id:70722 AF317504.1 Oscillatoria amphigranulata str. 19-2 prokMSA_id:73716 AF317503.1 Oscillatoria amphigranulata str. 11-3 prokMSA_id:74082 AF317505.1 Oscillatoria amphigranulata str. 23-3 2.14.2.1.1.1.4996 OTU 1 seq prokMSA_id:31912 AB039003.1 Fischerella muscicola str. PCC 7414 2.14.2.1.1.1.4997 OTU 4 seqs prokMSA_id:3564 AF132790.1 Gloeobacter violaceus str. PCC 7421 prokMSA_id:3565 AF132791.1 Gloeobacter violaceus str. PCC 8105 prokMSA_id:97840 NC_005125.1 Gloeobacter violaceus str. PCC 7421 prokMSA_id:108670 BA000045.2 Gloeobacter violaceus str. PCC 7421 2.14.2.1.1.1.5002 OTU 18 seqs prokMSA_id:3244 AJ000708.1 Cyanothece sp. str. PCC 7418 prokMSA_id:3245 AJ000709.1 Euhalothece sp. 'MPI 95AH10' str. MPI 95AH10 'MPI prokMSA_id:3246 AJ000710.1 Euhalothece sp. 'MPI 95AH13' str. MPI 95AH13 'MPI prokMSA_id:3248 AJ000712.1 Euhalothece sp. 'MPI N303' str. MPI 96N303 'MPI prokMSA_id:3249 AJ000713.1 Euhalothece sp. 'MPI 96N304' str. MPI 96N304 'MPI prokMSA_id:3252 AJ000711.1 Dactylococcopsis salina str. PCC 8305 prokMSA_id:17894 AJ000718.1 Euhalothece sp. 'MPI 96AL06' str. MPI 96AL06 prokMSA_id:20240 AJ000717.1 Euhalothece sp. 'MPI 95AH11' str. MPI 95AH11 prokMSA_id:22842 AF296872.1 Cyanothece sp. str. PCC 7418 prokMSA_id:25353 AJ000721.1 Aphanothece halophytica str. ATCC 43922 prokMSA_id:31941 AF459426.1 Euhalothece sp. str. LK-1 prokMSA_id:36657 AF266668.1 DGGE band related to unicellular cyanobacteria (Halothece ) clone prokMSA_id:42841 AJ248314.1 prokMSA_id:43885 AJ000720.1 Euhalothece sp. 'Syn CIP22' str. Syn CIP22 prokMSA_id:45745 AJ000722.1 Euhalothece sp. 'MPI 96P402' str. MPI 96P402 prokMSA_id:55647 AY121354.1 Aphanothece naegelii str. KCTC AG10042 prokMSA_id:71416 AJ000719.1 Euhalothece sp. 'MPI 96AL03' str. MPI 96AL03 prokMSA_id:92563 AJ580973.1 22% salinity pond clone DGGE band 8 2.14.2.1.1.1.5015 OTU 1 seq prokMSA_id:83035 AB093489.1 Chlorogloeopsis fritschii str. PCC 6912 2.14.2.1.1.1.5020 OTU 2 seqs prokMSA_id:71932 AF334699.1 Scytonema hyalinum str. FI-8A prokMSA_id:73317 AF334700.1 Scytonema hyalinum str. FI-8A 2.14.2.1.1.1.5025 OTU 3 seqs prokMSA_id:3276 AF076164.1 Antarctic LB3-75 clone prokMSA_id:3277 AF076165.1 Antarctic LB3-46 clone prokMSA_id:94377 AY151735.1 microbial mat clone Fr397 2.14.2.1.1.1.5027 OTU 2 seqs prokMSA_id:56564 AY147030.1 Calothrix sp. str. CCMEE 5085 prokMSA_id:69425 AY147029.1 Calothrix sp. str. CCMEE 5093 2.14.2.1.1.1.5030 OTU 22 seqs prokMSA_id:20777 AJ344560.1 Fischerella sp. BB98.1 str. SAG 2027 prokMSA_id:45088 AY034793.1 Hapalosiphon welwitschii prokMSA_id:60570 AF407731.1 Great Artesian Basin clone B95 prokMSA_id:60602 AF407696.1 Great Artesian Basin clone G01 prokMSA_id:70960 AY039703.1 Fischerella sp. str. CENA19 prokMSA_id:80861 AB074505.1 Fischerella muscicola str. PCC 73103 prokMSA_id:81241 AY218831.1 Cylindrospermum sp. str. CENA33 prokMSA_id:82530 AB093487.1 Fischerella major NIES-592 str. NIES 592 prokMSA_id:83042 AB093491.1 Fischerella sp. str. IAM M-263 prokMSA_id:83639 AB093484.1 Hapalosiphon delicatulus str. IAM M-266 prokMSA_id:85287 AB093485.1 Hapalosiphon sp. str. IAM M-264 prokMSA_id:99053 AY328896.1 Nostoc sp. str. 9.4.22 prokMSA_id:99515 AY328899.1 Nostoc sp. str. 119.7.1 prokMSA_id:101231 AJ544076.1 Fischerella sp. str. 1711 prokMSA_id:101393 AJ544077.1 Fischerella muscicola str. SAG2027 prokMSA_id:101509 AJ544090.1 Westiellopsis sp. str. 985-1 prokMSA_id:105030 AJ544222.1 Westiellopsis sp. str. 89-785/4 prokMSA_id:105355 AJ544080.1 Nostochopsis lobatus str. 92.1 prokMSA_id:105653 AJ544082.1 Stigonema ocellatum str. SAG 48.90 prokMSA_id:106426 AJ544087.1 Westiellopsis prolifica str. SAG 23.96 prokMSA_id:106583 AJ544088.1 Westiellopsis sp. str. 1590-1 prokMSA_id:106743 AJ544089.1 Westiellopsis sp. str. 1590-2 2.14.2.1.1.1.5032 OTU 1 seq prokMSA_id:82269 AJ548503.1 Phormidium sp. ETS-05 2.14.2.1.1.1.5044 OTU 1 seq prokMSA_id:3206 X84812.1 "Oscillatoria corallinae" 2.14.2.1.1.1.5058 OTU 1 seq prokMSA_id:17005 AF316710.1 Crater Lake clone CL120-14 2.14.2.1.1.1.5063 OTU 1 seq prokMSA_id:3082 X58359.1 Oscillatoria sp. PCC 7105 2.14.2.1.1.1.5064 OTU 2 seqs prokMSA_id:3288 AB003168.1 Oscillatoria neglecta str. M-82 prokMSA_id:34894 AB039012.1 Leptolyngbya sp. str. PCC 7104 2.14.2.1.1.1.5067 OTU 1 seq prokMSA_id:3260 AF076160.1 Antarctic LB3-64 clone 2.14.2.1.1.1.5071 OTU 1 seq prokMSA_id:3089 X68780.1 "Chlorogloeopsis species" 2.14.2.1.1.1.5074 OTU 1 seq prokMSA_id:3268 AF170766.1 cyanobacterium clone QSSC8L-6 2.14.2.1.1.1.5075 OTU 1 seq prokMSA_id:3269 AF170768.1 cyanobacterium clone QSSC8L-8 2.14.2.1.1.1.5083 OTU 1 seq prokMSA_id:3304 AJ007864.1 cyanobacterium clone LD7 2.14.2.1.1.1.5084 OTU 1 seq prokMSA_id:51795 AB042857.1 Phormidium tenue str. NIES30 2.14.2.1.1.1.5085 OTU 1 seq prokMSA_id:41164 AF259634.1 Philippines clone 25 2.14.2.1.1.1.5087 OTU 1 seq prokMSA_id:25956 AF284809.1 Microcoleus sociatus str. MPI 96MS.KID 2.14.2.1.1.1.5088 OTU 1 seq prokMSA_id:3307 U40335.1 "Microcystis elabens" 2.14.2.1.1.1.5091 OTU 1 seq prokMSA_id:3274 AF076159.1 Antarctic LB3-53 clone 2.14.2.1.1.1.5093 OTU 1 seq prokMSA_id:49732 AF442048.1 cyanobacterium clone CD1401B9 2.14.2.1.1.1.5103 OTU 3 seqs prokMSA_id:3093 AF132779.1 Calothrix desertica str. PCC 7102 prokMSA_id:3097 X99213.1 Calothrix sp. DCC D253 prokMSA_id:33939 AJ133164.1 Calothrix sp. PCC 7714 str. PCC7714 2.14.2.1.1.1.5104 OTU 2 seqs prokMSA_id:44601 AF445707.1 travertine hot spring clone SM2A06 prokMSA_id:74772 AF445678.1 travertine hot spring clone SM1D12 2.14.2.1.1.1.5118 OTU 1 seq prokMSA_id:26120 AF284810.1 Oscillatoria sp. str. MPI 990BR03 2.14.2.1.1.1.5125 OTU 7 seqs prokMSA_id:3299 X03538.1 Synechococcus elongatus prokMSA_id:3303 D88288.1 Synechococcus sp. str. PCC7942 prokMSA_id:28050 AF132930.1 Synechococcus elongatus PCC 7942 prokMSA_id:50219 AF216949.1 Synechococcus sp. PCC 7943 str. PCC7943 prokMSA_id:81974 AY224194.1 Synechococcus sp. str. BD-1 prokMSA_id:110298 NC_006576.1 Synechococcus elongatus PCC 6301 str. PCC6301 prokMSA_id:111342 AP008231.1 Synechococcus elongatus PCC 6301 str. PCC6301 2.14.2.1.1.1.5126 OTU 3 seqs prokMSA_id:67764 AF423356.1 cyanobacterium isolate str. TFWG prokMSA_id:72108 AF317506.1 Leptolyngbya sp. str. PCC 9207 prokMSA_id:74282 AF317507.1 Leptolyngbya sp. str. PCC 9221 2.14.2.1.1.1.5131 OTU 1 seq prokMSA_id:70663 AB045961.1 Oscillatoria princeps str. NIVA CYA 150 2.14.2.1.1.1.5141 OTU 1 seq prokMSA_id:36764 AF445719.1 travertine hot spring clone SM2C12 2.14.2.1.1.1.5145 OTU 21 seqs prokMSA_id:3383 AF132774.1 Synechococcus sp. str. P1 prokMSA_id:3384 AF132775.1 Synechococcus sp. str. P2 prokMSA_id:3561 M62776.1 Octopus Spring microbial mat DNA Type B prokMSA_id:37551 AF445693.1 travertine hot spring clone SM1F11 prokMSA_id:42778 AF445722.1 travertine hot spring clone SM2D09 prokMSA_id:69841 AF285241.1 Synechococcus sp. str. OH20 prokMSA_id:70240 AF285242.1 Synechococcus sp. str. OH31 prokMSA_id:70422 AF285243.1 Synechococcus sp. str. OH32 prokMSA_id:70809 AF285240.1 Synechococcus sp. str. OH4 prokMSA_id:71080 AF285256.1 Synechococcus sp. str. OH30 prokMSA_id:71306 AF285254.1 Synechococcus sp. str. OH28 prokMSA_id:71581 AF285258.1 Synechococcus sp. str. OH34 prokMSA_id:71587 AF285259.1 Synechococcus sp. str. OH2 prokMSA_id:72458 AF285255.1 Synechococcus sp. str. OH29 prokMSA_id:73271 AF285257.1 Synechococcus sp. str. OH33 prokMSA_id:78933 AY189625.1 Homo sapiens outer ear canal clone EarCan098 prokMSA_id:80319 AY193064.1 Yellowstone National Park thermal spring mat clone O1aA6 prokMSA_id:81599 AF505960.1 Synechococcus sp. 37 prokMSA_id:82209 AF505962.1 HP library Heart Pool hot spring cyanobacterial mat temp. 56.6-58.3 C pH=9.2 clone HP-9b prokMSA_id:82458 AF505961.1 CWN library Clearwater North hot spring cyanobacterial mat temp. 54.0-56.2 C pH=7.5 clone CWN-a10 prokMSA_id:87354 AY293403.1 travertine terrace Yellowstone Hot Springs clone SM2A08 2.14.2.1.1.1.5148 OTU 4 seqs prokMSA_id:16431 AJ292194.1 Mycale sp. symbiont prokMSA_id:17869 AJ292192.1 Mycale sp. symbiont prokMSA_id:39596 AJ292193.1 Mycale sp. symbiont prokMSA_id:40771 AJ292195.1 Mycale sp. symbiont 2.14.2.1.1.1.5151 OTU 1 seq prokMSA_id:16864 AY038527.2 Black Band Disease mat clone CD1C11 2.14.2.1.1.1.5153 OTU 3 seqs prokMSA_id:34545 AY038727.1 epilithon clone TAF-B69 prokMSA_id:42801 AY038726.1 epilithon clone TAF-A32 prokMSA_id:71940 AY038728.1 epilithon clone TAF-B14 2.14.2.1.1.1.5163 OTU 2 seqs prokMSA_id:50338 AF394206.1 Scenedesmus obliquus str. UTEX 78 prokMSA_id:81505 AJ548895.1 Scenedesmus sp. chloroplast clone BIOEST-6 2.14.2.1.1.1.5169 OTU 2 seqs prokMSA_id:3065 AF170762.1 cyanobacterium clone QSSC8L-2 prokMSA_id:25253 AF170775.1 cyanobacterium clone QSSC8L-15 2.14.2.1.1.1.5180 OTU 2 seqs prokMSA_id:67883 AF355395.1 Microcoleus steenstrupii JO1-MC1 prokMSA_id:67884 AF355396.1 Microcoleus steenstrupii JO1-MC1 2.14.2.1.1.1.5187 OTU 1 seq prokMSA_id:3094 AB003167.1 Phormidium ambiguum str. M-71 2.14.2.1.1.1.5188 OTU 1 seq prokMSA_id:57549 AY163573.1 Acaryochloris marina 2.14.2.1.1.1.5194 OTU 1 seq prokMSA_id:3096 AF170763.1 cyanobacterium clone QSSC8L-3 2.14.2.1.1.1.5197 OTU 3 seqs prokMSA_id:3261 AF076162.1 Antarctic LB3-80 clone prokMSA_id:3262 AF076163.1 Antarctic LB3-47 clone prokMSA_id:40204 AY038733.1 epilithon clone TAF-B74 2.14.2.1.1.1.5204 OTU 1 seq prokMSA_id:32930 AF218374.1 Phormidium murrayii str. UTCC475 2.14.2.1.1.1.5205 OTU 1 seq prokMSA_id:40082 AF216946.1 Synechococcus sp. PCC 7902 str. PCC7902 2.14.2.1.1.1.5208 OTU 1 seq prokMSA_id:3247 AJ000724.1 Halothece sp. str. MPI 96P605 2.14.2.1.1.1.5211 OTU 1 seq prokMSA_id:3287 X62685.1 Phormidium minutum str. D5 2.14.2.1.1.1.5220 OTU 1 seq prokMSA_id:35777 AF337654.1 Oscillatoria sp. str. KCTC AG10184 2.14.2.1.1.2 sf_6 1 seq 2.14.2.1.1.2.5186 OTU 1 seq prokMSA_id:83349 AY222299.1 silica sinter depositing geothermal power station discharge drain clone ST01-SN2C 2.14.2.1.1.3 sf_7 1 seq 2.14.2.1.1.3.3534 OTU 1 seq prokMSA_id:44586 AF445731.1 travertine hot spring clone SM2F09 2.14.2.1.1.4 sf_8 2 seqs 2.14.2.1.1.4.5068 OTU 1 seq prokMSA_id:49499 AF316709.1 Crater Lake clone CL120-102 2.14.2.1.1.4.5206 OTU 1 seq prokMSA_id:63233 AF523993.1 forested wetland clone FW124 2.14.2.1.1.5 sf_9 4 seqs 2.14.2.1.1.5.5038 OTU 3 seqs prokMSA_id:58155 AF544207.1 Rumen isolate str. YS2 prokMSA_id:84893 AY244880.1 cow rumen clone BF2 prokMSA_id:85761 AY244890.1 cow rumen clone BF12 2.14.2.1.1.5.5164 OTU 1 seq prokMSA_id:77762 AB089123.1 termite gut homogenate clone Rs-H34 2.15 Deferribacteres 24 seqs 2.15.1 Deferribacer 6 seqs 2.15.1.1 Unclassified 6 seqs 2.15.1.1.1 Unclassified 6 seqs 2.15.1.1.1.1 sf_1 6 seqs 2.15.1.1.1.1.770 OTU 3 seqs prokMSA_id:1863 U75602.1 Deferribacter thermophilus prokMSA_id:70142 AB086060.1 Deferribacter desulfuricans prokMSA_id:107000 AB189456.1 Deferribacter sp. RV1 2.15.1.1.1.1.797 OTU 3 seqs prokMSA_id:57548 AJ515882.1 Deferribacter sp. JR prokMSA_id:57551 AJ515881.1 Deferribacter sp. DR prokMSA_id:111022 AJ874313.1 continuous enrichment hydrothermal black chimney clone 820 2.15.2 Geovibrio 18 seqs 2.15.2.1 Unclassified 18 seqs 2.15.2.1.1 Unclassified 18 seqs 2.15.2.1.1.1 sf_3 18 seqs 2.15.2.1.1.1.1 OTU 10 seqs prokMSA_id:1867 AF059186.1 Geovibrio-like str. UNSW2.6liv prokMSA_id:1868 AF059187.1 Geovibrio-like str. HRI1cae prokMSA_id:1869 AF059188.1 Geovibrio-like str. HRI3liv prokMSA_id:1871 AF059190.1 Geovibrio-like str. UNSWRSp12 prokMSA_id:1872 AF157055.1 Geovibrio-like str. ASF 457 prokMSA_id:25453 AF371927.1 pig gut clone p-2881-6C5 prokMSA_id:95638 AY387670.1 Mucispirillum schaedleri str. HRI I17 prokMSA_id:95739 AY387671.1 Mucispirillum schaedleri str. UNSW I23 prokMSA_id:96944 AY387669.1 Mucispirillum schaedleri str. HRI I12 prokMSA_id:97295 AY387668.1 Mucispirillum schaedleri str. ABHU I23 2.15.2.1.1.1.639 OTU 6 seqs prokMSA_id:1866 X95744.1 Geovibrio ferrireducens prokMSA_id:25709 AJ299402.1 Geovibrio agilis prokMSA_id:65916 AF507401.1 pinyon-juniper forest soil clone C0188 prokMSA_id:65925 AF507392.1 pinyon-juniper forest soil clone C0152 prokMSA_id:65928 AF507388.1 pinyon-juniper forest soil clone C038 prokMSA_id:65935 AF507377.1 pinyon-juniper forest soil clone C0194 2.15.2.1.1.1.945 OTU 1 seq prokMSA_id:43329 AF146526.1 Denitrovibrio acetiphilus 2.15.2.1.1.1.962 OTU 1 seq prokMSA_id:1873 AF157057.1 Geovibrio-like str. Lincoln Park 3 2.16 Deinococcus-Thermus 161 seqs 2.16.1 Unclassified 161 seqs 2.16.1.1 Unclassified 161 seqs 2.16.1.1.1 Unclassified 161 seqs 2.16.1.1.1.1 sf_1 139 seqs 2.16.1.1.1.1.136 OTU 9 seqs prokMSA_id:1360 L09667.1 Thermus filiformis prokMSA_id:1383 L10068.1 Thermus sp. 17 prokMSA_id:1384 L09666.1 Thermus species prokMSA_id:1385 L09665.1 Thermus species prokMSA_id:1388 L10069.1 Thermus sp. 16 prokMSA_id:1392 L09669.1 Thermus species prokMSA_id:1393 L09668.1 Thermus species prokMSA_id:1394 L09671.1 Thermus species prokMSA_id:38282 AF402971.1 hot spring clone bacteriap1 2.16.1.1.1.1.178 OTU 1 seq prokMSA_id:67904 AY028380.1 Thermus sp. str. C4 2.16.1.1.1.1.193 OTU 2 seqs prokMSA_id:20463 AJ430586.1 Oceanithermus profundus prokMSA_id:85579 AB107956.1 Oceanithermus desulfurans str. St55B 2.16.1.1.1.1.563 OTU 1 seq prokMSA_id:60062 AJ507298.1 Vulcanithermus mediatlanticus str. TR 2.16.1.1.1.1.678 OTU 1 seq prokMSA_id:1404 X84212.1 Meiothermus chliarophilus str. ALT-8 2.16.1.1.1.1.679 OTU 3 seqs prokMSA_id:1405 X84211.1 Meiothermus silvanus str. V1-R2 prokMSA_id:1406 Y13598.1 Meiothermus silvanus str. GY-8 prokMSA_id:1407 Y13599.1 Meiothermus silvanus str. GY-10 2.16.1.1.1.1.753 OTU 5 seqs prokMSA_id:45920 Y18416.1 Thermus oshimai str. SPS-17T prokMSA_id:46453 AB054646.1 Thermus sp. str. T2 prokMSA_id:60595 AF407704.1 Great Artesian Basin clone G24 prokMSA_id:107269 AY731826.1 Thermus sp. str. RH-0405 prokMSA_id:107414 AY731827.1 Thermus sp. str. RH-0406 2.16.1.1.1.1.886 OTU 100 seqs prokMSA_id:1316 L09659.1 Thermus thermophilus prokMSA_id:1317 L10070.1 Thermus sp. 15 prokMSA_id:1318 AF027019.1 hot spring clone OPB19 prokMSA_id:1319 AF027020.1 hot spring clone OPB31 prokMSA_id:1320 AF027021.1 hot spring clone OPB32 prokMSA_id:1324 AF018197.1 temperature clone env.OPS 15 prokMSA_id:1325 L10071.1 Thermus sp. 14 prokMSA_id:1326 X07998.1 Thermus thermophilus prokMSA_id:1328 L10067.1 Thermus sp. 18 prokMSA_id:1331 Z15062.1 Thermus species prokMSA_id:1333 AF032127.1 Thermus scotoductus str. Se 1 prokMSA_id:1334 L09661.1 Thermus species prokMSA_id:1335 AF020205.1 Thermus scotoductus str. SA-01 prokMSA_id:1337 L09670.1 Thermus species prokMSA_id:1338 AB020888.1 Thermus sp. str. TMY1 prokMSA_id:1344 L09660.1 Thermus flavus prokMSA_id:1345 L09663.1 Thermus aquaticus prokMSA_id:1348 L09664.1 Thermus species prokMSA_id:1349 M26923.1 Thermus thermophilus prokMSA_id:1355 L09662.1 Thermus sp. 2 prokMSA_id:1356 L37520.1 Thermus species prokMSA_id:1357 L37522.1 Thermus species prokMSA_id:1358 Z15061.1 Thermus species prokMSA_id:16358 AY053486.1 gas hydrate clone AT425_EubC9 prokMSA_id:17962 AF255591.1 hot spring clone SRI-248 prokMSA_id:18463 Y18406.1 Thermus igniterrae str. RF-4T prokMSA_id:24092 AB071811.1 Thermus kawarayuensis str. KW11 prokMSA_id:25836 AF255590.1 hot spring clone SRI-96 prokMSA_id:26144 Y18410.1 Thermus scotoductus str. ITI-252T prokMSA_id:27993 AF324062.1 Thermus sp. str. NTU-024 prokMSA_id:29817 AF445644.1 travertine hot spring clone SM1A01 prokMSA_id:30085 Y18409.1 Thermus brockianus str. 15038T prokMSA_id:33149 Y18407.1 Thermus igniterrae str. HN1-8 prokMSA_id:35173 AJ251938.1 Thermus thermophilus str. CS prokMSA_id:37306 AJ251939.1 Thermus thermophilus str. X6 prokMSA_id:39025 Y18411.1 Thermus antranikianii str. HN3-7T prokMSA_id:40690 AJ251940.1 Thermus thermophilus str. CT1 prokMSA_id:41572 AF331969.1 Thermus rehai str. RH99-02 prokMSA_id:45737 AF257219.1 Thermus sp. str. IT-7254 prokMSA_id:47782 Y18408.1 Thermus igniterrae str. GE-2 prokMSA_id:53657 AF384168.1 Thermus sp. HR13 prokMSA_id:55685 AF407738.1 Thermus sp. str. G70-06 prokMSA_id:55806 AF407737.1 Thermus sp. str. G70-05 prokMSA_id:60555 AF407747.1 Thermus sp. str. Y55-11 prokMSA_id:60556 AF407748.1 Thermus sp. str. Y55-12 prokMSA_id:60557 AF407746.1 Thermus sp. str. Y55-10 prokMSA_id:60558 AF407745.1 Thermus sp. str. Y55-09 prokMSA_id:60559 AF407744.1 Thermus sp. str. Y55-08 prokMSA_id:60560 AF407743.1 Thermus sp. str. Y55-07 prokMSA_id:60561 AF407742.1 Thermus sp. str. B70-05 prokMSA_id:60562 AF407741.1 Thermus sp. str. B70-04 prokMSA_id:60563 AF407740.1 Thermus sp. str. G70-08 prokMSA_id:60564 AF407739.1 Thermus sp. str. G70-07 prokMSA_id:60565 AF407736.1 Thermus sp. str. R70-07 prokMSA_id:60566 AF407735.1 Thermus sp. str. R70-06 prokMSA_id:60567 AF407734.1 Thermus sp. str. Y70-07 prokMSA_id:60568 AF407733.1 Thermus sp. str. Y70-06 prokMSA_id:60569 AF407732.1 Thermus sp. str. Y70-05 prokMSA_id:60605 AF407693.1 Great Artesian Basin clone R58 prokMSA_id:60613 AF407683.1 Great Artesian Basin clone Y90 prokMSA_id:60614 AF407682.1 Great Artesian Basin clone Y88 prokMSA_id:60615 AF407681.1 Great Artesian Basin clone Y71 prokMSA_id:60620 AF407676.1 Great Artesian Basin clone Y10 prokMSA_id:60622 AF407674.1 Great Artesian Basin clone Y03 prokMSA_id:63588 AF521188.1 Thermus sp. str. RH-1514 prokMSA_id:63589 AF521187.1 Thermus sp. str. RH-1214 prokMSA_id:63592 AF521186.1 Thermus sp. str. RH-914 prokMSA_id:67864 AY082365.1 hot spring clone DFQ34 prokMSA_id:67865 AY082364.1 hot spring clone DFQ28 prokMSA_id:67866 AY082366.1 hot spring clone DFQ37 prokMSA_id:67868 AY082363.1 hot spring clone DFQ6 prokMSA_id:71171 AF448817.1 Thermus sp. str. YBJ-1 prokMSA_id:75730 AX557347.1 Thermus thermophilus prokMSA_id:81243 AY169420.1 Thermus scotoductus prokMSA_id:81961 AY169426.1 Thermus scotoductus prokMSA_id:99361 AY554280.1 Thermus thermophilus str. JN2 prokMSA_id:100179 AB183863.1 deep aquifer Great Artesian Basin clone GAB-B07 prokMSA_id:103082 AE017305.1 Thermus thermophilus str. HB27 prokMSA_id:103373 AE017307.1 Thermus thermophilus str. HB27 prokMSA_id:106663 AY731822.1 Thermus sp. str. RH-0401 prokMSA_id:106875 L77877.1 Thermothrix thiopara prokMSA_id:106962 AY731824.1 Thermus sp. str. RH-0403 prokMSA_id:107121 AY731825.1 Thermus sp. str. RH-0404 prokMSA_id:108733 NC_005835.1 Thermus thermophilus HB27 prokMSA_id:108835 AP008226.1 Thermus thermophilus str. HB8 prokMSA_id:108972 NC_006461.1 Thermus thermophilus str. HB8 prokMSA_id:111437 AY882776.1 hot spring clone SK222 prokMSA_id:111857 AY882751.1 hot spring clone SK196 prokMSA_id:111935 AY882752.1 hot spring clone SK197 prokMSA_id:112011 AY882749.1 hot spring clone SK194 prokMSA_id:112087 AY882734.1 hot spring clone SK179 prokMSA_id:112466 AY861782.1 Obsidian Pool prime community clone OPPB046 prokMSA_id:112491 AY861808.1 Obsidian Pool prime community clone OPPB077 prokMSA_id:112555 AY861798.1 Obsidian Pool prime community clone OPPB065 prokMSA_id:112577 AY861889.1 Obsidian Pool prime community clone OPPB171 prokMSA_id:112587 AY861770.1 Obsidian Pool prime community clone OPPB027 prokMSA_id:112592 AY861859.1 Obsidian Pool prime community clone OPPB137 prokMSA_id:112604 AY861877.1 Obsidian Pool prime community clone OPPB158 prokMSA_id:112631 AY861768.1 Obsidian Pool prime community clone OPPB025 prokMSA_id:112661 AY861885.1 Obsidian Pool prime community clone OPPB166 2.16.1.1.1.1.941 OTU 17 seqs prokMSA_id:1395 L37523.1 Thermus species prokMSA_id:1396 Y13594.1 Meiothermus cerbereus str. GY-1T prokMSA_id:1397 Y13595.1 Meiothermus cerbereus str. GY-5 prokMSA_id:1398 L37521.1 Thermus species prokMSA_id:1400 L09672.1 Meiothermus ruber prokMSA_id:1401 Y13596.1 Meiothermus ruber str. 16105 prokMSA_id:1402 Y13597.1 Meiothermus ruber str. 16106 prokMSA_id:1403 Z15059.1 Meiothermus ruber prokMSA_id:17405 AF312766.1 Meiothermus rosaceus str. RH99-01 prokMSA_id:20802 AF418002.1 Meiothermus taiwanensis str. WR-220 prokMSA_id:26209 AF418001.1 Meiothermus taiwanensis str. WR-30 prokMSA_id:56011 AF407749.1 Thermus sp. str. R55-10 prokMSA_id:56267 AF407703.1 Great Artesian Basin clone G21 prokMSA_id:60587 AF407712.1 Great Artesian Basin clone B01 prokMSA_id:60593 AF407706.1 Great Artesian Basin clone G34 prokMSA_id:60612 AF407684.1 Great Artesian Basin clone R03 prokMSA_id:69769 AF407750.1 Meiothermus sp. str. R55-11 2.16.1.1.1.2 sf_2 2 seqs 2.16.1.1.1.2.637 OTU 1 seq prokMSA_id:62482 AF513964.1 hypersaline pond clone LA7-B27N 2.16.1.1.1.2.965 OTU 1 seq prokMSA_id:86556 AY250871.1 lichen-dominated Antarctic cryptoendolithic community clone FBP266 bacterium 2.16.1.1.1.3 sf_3 20 seqs 2.16.1.1.1.3.124 OTU 5 seqs prokMSA_id:1411 Y13039.1 Deinococcus geothermalis prokMSA_id:1412 Y13040.1 Deinococcus geothermalis prokMSA_id:1413 Y13038.1 Deinococcus geothermalis prokMSA_id:1420 AJ000002.1 Deinococcus geothermalis prokMSA_id:1421 Y15444.1 Deinococcus geothermalis 2.16.1.1.1.3.335 OTU 3 seqs prokMSA_id:1414 Y13041.1 Deinococcus murrayi prokMSA_id:1415 Y13043.1 Deinococcus murrayi prokMSA_id:1416 Y13042.1 Deinococcus murrayi 2.16.1.1.1.3.52 OTU 3 seqs prokMSA_id:1417 Y11332.1 Deinococcus radiodurans prokMSA_id:25349 AF289089.1 Deinococcus radiodurans str. DC prokMSA_id:55007 NC_001263.1 Deinococcus radiodurans R1 2.16.1.1.1.3.688 OTU 1 seq prokMSA_id:1408 Y11331.1 Deinococcus proteolyticus 2.16.1.1.1.3.700 OTU 1 seq prokMSA_id:1410 Y11333.1 Deinococcus radiophilus 2.16.1.1.1.3.720 OTU 1 seq prokMSA_id:1419 Y11334.1 Deinococcus radiopugnans 2.16.1.1.1.3.813 OTU 4 seqs prokMSA_id:1422 Y11329.1 Deinococcus grandis prokMSA_id:1424 AB022911.1 Deinococcus sp.HKG1 prokMSA_id:1426 D78365.1 Deinococcus sp. prokMSA_id:81042 AJ549111.1 Deinococcus indicus str. Wt/1a 2.16.1.1.1.3.920 OTU 1 seq prokMSA_id:63290 AF523929.1 forested wetland clone RCP1-75 2.16.1.1.1.3.996 OTU 1 seq prokMSA_id:1418 M21413.1 Deinococcus radiodurans 2.17 Dictyoglomi 6 seqs 2.17.1 Dictyoglomi 6 seqs 2.17.1.1 Dictyoglomales 6 seqs 2.17.1.1.1 Dictyoglomaceae 6 seqs 2.17.1.1.1.1 sf_4 5 seqs 2.17.1.1.1.1.2309 OTU 1 seq prokMSA_id:13736 AF027077.1 Dictyoglomus group clone OPS61 2.17.1.1.1.1.2313 OTU 1 seq prokMSA_id:13737 AF027078.1 Dictyoglomus group clone OPS145 2.17.1.1.1.1.2355 OTU 2 seqs prokMSA_id:13733 L39875.1 Dictyoglomus thermophilum prokMSA_id:13735 X69194.1 Dictyoglomus thermophilum 2.17.1.1.1.1.2546 OTU 1 seq prokMSA_id:13732 Z14090.1 Dictyoglomus species 2.17.1.1.1.2 sf_9 1 seq 2.17.1.1.1.2.7579 OTU 1 seq prokMSA_id:31458 AF353224.1 marine clone Arctic96B-6 2.18 DSS1 2 seqs 2.18.1 Unclassified 2 seqs 2.18.1.1 Unclassified 2 seqs 2.18.1.1.1 Unclassified 2 seqs 2.18.1.1.1.1 sf_1 1 seq 2.18.1.1.1.1.4405 OTU 1 seq prokMSA_id:31444 AF323768.2 benzoate-degrading consortium clone BA143 2.18.1.1.1.2 sf_2 1 seq 2.18.1.1.1.2.38 OTU 1 seq prokMSA_id:66919 AJ306783.1 DCP-dechlorinating consortium clone SHA-109 2.19 EM3 4 seqs 2.19.1 Unclassified 4 seqs 2.19.1.1 Unclassified 4 seqs 2.19.1.1.1 Unclassified 4 seqs 2.19.1.1.1.1 sf_1 1 seq 2.19.1.1.1.1.620 OTU 1 seq prokMSA_id:35729 AF352534.1 hot spring clone QL4-2 2.19.1.1.1.2 sf_2 1 seq 2.19.1.1.1.2.828 OTU 1 seq prokMSA_id:1241 U05660.1 Reysenbach clone EM3 2.19.1.1.1.3 sf_3 2 seqs 2.19.1.1.1.3.830 OTU 2 seqs prokMSA_id:1243 AF027071.1 hot spring clone OPB7 prokMSA_id:35305 AF255594.1 hot spring clone SRI-15 2.2 Acidobacteria 289 seqs 2.2.1 Acidobacteria-10 1 seq 2.2.1.1 Unclassified 1 seq 2.2.1.1.1 Unclassified 1 seq 2.2.1.1.1.1 sf_1 1 seq 2.2.1.1.1.1.516 OTU 1 seq prokMSA_id:76459 AJ532721.1 uranium mining waste pile clone JG34-KF-153 2.2.10 Unclassified 3 seqs 2.2.10.1 Unclassified 3 seqs 2.2.10.1.1 Unclassified 3 seqs 2.2.10.1.1.1 sf_1 2 seqs 2.2.10.1.1.1.4222 OTU 1 seq prokMSA_id:63236 AF523991.1 forested wetland clone FW105 2.2.10.1.1.1.572 OTU 1 seq prokMSA_id:63239 AF523986.1 forested wetland clone FW144 2.2.10.1.1.2 sf_2 1 seq 2.2.10.1.1.2.314 OTU 1 seq prokMSA_id:1813 AF154085.1 hydrocarbon seep clone BPC015 2.2.2 Acidobacteria-2 4 seqs 2.2.2.1 Ellin5121/DA052 2 seqs 2.2.2.1.1 Unclassified 2 seqs 2.2.2.1.1.1 sf_1 2 seqs 2.2.2.1.1.1.6361 OTU 2 seqs prokMSA_id:36155 AJ292584.1 PCB-polluted soil clone WD261 prokMSA_id:39712 AJ292590.1 PCB-polluted soil clone WD298 2.2.2.2 FW92 group 2 seqs 2.2.2.2.1 Unclassified 2 seqs 2.2.2.2.1.1 sf_1 2 seqs 2.2.2.2.1.1.6365 OTU 2 seqs prokMSA_id:46444 AJ295657.1 uranium mining waste clone KF/GS-JG36-31 prokMSA_id:77027 AJ519366.1 uranium mining waste pile clone JG37-AG-13 sp. 2.2.3 Acidobacteria-4 41 seqs 2.2.3.1 Ellin6075/11-25 24 seqs 2.2.3.1.1 Unclassified 24 seqs 2.2.3.1.1.1 sf_1 24 seqs 2.2.3.1.1.1.327 OTU 1 seq prokMSA_id:86097 AY250867.1 lichen-dominated Antarctic cryptoendolithic community clone FBP241 2.2.3.1.1.1.435 OTU 1 seq prokMSA_id:81698 AY211077.1 anaerobic VC-degrading enrichment clone VC47 bacterium 2.2.3.1.1.1.790 OTU 21 seqs prokMSA_id:1749 Z95709.1 soil clone 11-25 prokMSA_id:1767 AF173824.1 Antarctic clone LB3-92 prokMSA_id:1768 AF173822.1 Antarctic clone LB3-30 prokMSA_id:47841 AF234743.1 sludge clone H44 prokMSA_id:51292 AF234751.1 sludge clone S6 prokMSA_id:56714 AF368180.1 activated sludge clone SBR1013 prokMSA_id:66557 AY094624.1 travertine-depositing hot springs clone SM1H07 prokMSA_id:75650 AY154482.1 earthworm intestine clone wi14 prokMSA_id:86817 AY293402.1 travertine terrace Yellowstone Hot Springs clone SM1H07 prokMSA_id:88737 AY289362.1 soil clone DS-249 prokMSA_id:100408 AY571789.1 hydrocarbon-contaminated soil clone 356G prokMSA_id:104411 AY571792.1 hydrocarbon-contaminated soil clone 351B prokMSA_id:104714 AY571794.1 hydrocarbon-contaminated soil clone 354A prokMSA_id:111488 AY234727.1 soil isolate Ellin6075 prokMSA_id:113049 AY921727.1 farm soil adjacent to silage storage bunker clone AKYH928 prokMSA_id:113117 AY921661.1 farm soil adjacent to silage storage bunker clone AKYG584 prokMSA_id:113129 AY921970.1 farm soil adjacent to silage storage bunker clone AKYG1668 prokMSA_id:113375 AY921662.1 farm soil adjacent to silage storage bunker clone AKYH1350 prokMSA_id:113849 AY921966.1 farm soil adjacent to silage storage bunker clone AKYG1643 prokMSA_id:114283 AY921728.1 farm soil adjacent to silage storage bunker clone AKYG1657 prokMSA_id:114367 AY921791.1 farm soil adjacent to silage storage bunker clone AKYH1309 2.2.3.1.1.1.87 OTU 1 seq prokMSA_id:1776 AF097766.1 sludge clone 2951 2.2.3.2 Unclassified 17 seqs 2.2.3.2.1 Unclassified 17 seqs 2.2.3.2.1.1 sf_1 17 seqs 2.2.3.2.1.1.419 OTU 1 seq prokMSA_id:16287 Z95730.1 Holophaga/Acidobacterium phylum clone iii3-16 2.2.3.2.1.1.6348 OTU 1 seq prokMSA_id:3692 Z95722.1 soil clone RB41 2.2.3.2.1.1.6363 OTU 9 seqs prokMSA_id:3686 Z95711.1 soil clone 32-11 prokMSA_id:21414 Z95712.1 Holophaga/Acidobacterium phylum clone 32-19 prokMSA_id:24596 Z95715.1 Holophaga/Acidobacterium phylum clone RB112 prokMSA_id:86371 AY214900.2 soil clone BAC-220H prokMSA_id:88510 AY289367.1 soil clone DS-111 prokMSA_id:103701 AY456757.1 Dover Air Force Base be water table 1 clone DBW1-189 prokMSA_id:112778 AY921839.1 farm soil adjacent to silage storage bunker clone AKYH921 prokMSA_id:112930 AY921837.1 farm soil adjacent to silage storage bunker clone AKYG716 prokMSA_id:113291 AY921997.1 farm soil adjacent to silage storage bunker clone AKYG1861 2.2.3.2.1.1.6455 OTU 1 seq prokMSA_id:3697 Z95720.1 soil clone RB30 2.2.3.2.1.1.654 OTU 1 seq prokMSA_id:1791 AF013554.2 soil clone SO27 2.2.3.2.1.1.884 OTU 1 seq prokMSA_id:1783 AF013550.2 soil clone S023 2.2.3.2.1.1.924 OTU 2 seqs prokMSA_id:1747 AF013563.2 Uncultivated soil S116 clone prokMSA_id:36828 Z95723.1 Holophaga/Acidobacterium phylum clone RB43 2.2.3.2.1.1.938 OTU 1 seq prokMSA_id:1797 AF013560.2 soil clone S111 2.2.4 Acidobacteria-5 6 seqs 2.2.4.1 Unclassified 6 seqs 2.2.4.1.1 Unclassified 6 seqs 2.2.4.1.1.1 sf_1 6 seqs 2.2.4.1.1.1.523 OTU 6 seqs prokMSA_id:16412 Z95714.1 Holophaga/Acidobacterium phylum clone 32-21 prokMSA_id:44004 AF245036.1 soil metagenomic library clone 17F9 prokMSA_id:75727 AJ519393.1 uranium mining waste pile clone JG37-AG-149 sp. prokMSA_id:76452 AY150899.1 disturbed surface soil clone GR13 prokMSA_id:76977 AY150893.1 disturbed surface soil clone GR14 prokMSA_id:84875 AY214840.1 soil clone BB-2-C9F 2.2.5 Acidobacteria-6 54 seqs 2.2.5.1 Unclassified 54 seqs 2.2.5.1.1 Unclassified 54 seqs 2.2.5.1.1.1 sf_1 54 seqs 2.2.5.1.1.1.100 OTU 1 seq prokMSA_id:76114 AJ534631.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-10 2.2.5.1.1.1.1014 OTU 1 seq prokMSA_id:52982 Z95725.1 soil clone ii3-15 2.2.5.1.1.1.102 OTU 1 seq prokMSA_id:51476 Z95735.1 Holophaga/Acidobacterium phylum clone mb2430 2.2.5.1.1.1.1046 OTU 1 seq prokMSA_id:75514 AJ532717.1 uranium mining waste pile clone JG34-KF-27 2.2.5.1.1.1.1047 OTU 1 seq prokMSA_id:1818 Z95719.1 soil clone RB27 2.2.5.1.1.1.1049 OTU 1 seq prokMSA_id:1828 AF013534.2 soil clone C112 2.2.5.1.1.1.13 OTU 1 seq prokMSA_id:76504 AJ534637.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-202 bacterium 2.2.5.1.1.1.347 OTU 1 seq prokMSA_id:28670 AF234701.1 sludge clone A22 2.2.5.1.1.1.350 OTU 1 seq prokMSA_id:85443 AY221047.1 Mammoth cave clone CCM15a 2.2.5.1.1.1.37 OTU 2 seqs prokMSA_id:76544 AJ519385.1 uranium mining waste pile clone JG37-AG-99 sp. prokMSA_id:83207 AY214904.2 soil clone BAC-14A1 2.2.5.1.1.1.404 OTU 3 seqs prokMSA_id:35478 Z95737.1 Holophaga/Acidobacterium phylum clone mb3429 prokMSA_id:89660 AY281352.1 soil clone 23k22 prokMSA_id:114418 AY921690.1 farm soil adjacent to silage storage bunker clone AKYG673 2.2.5.1.1.1.500 OTU 6 seqs prokMSA_id:1827 AF013527.2 soil clone C028 prokMSA_id:1854 Z95717.1 soil clone RB24 prokMSA_id:75589 AJ519375.1 uranium mining waste pile clone JG37-AG-56 sp. prokMSA_id:80372 AJ538049.1 agricultural soil clone CF7 prokMSA_id:82974 AY217487.1 saturated sediment Wind Cave South Dakota clone WCB72 prokMSA_id:83511 AY217490.1 saturated sediment Wind Cave South Dakota clone WCB122 2.2.5.1.1.1.517 OTU 1 seq prokMSA_id:46235 AF423279.1 soil clone 576-2 2.2.5.1.1.1.53 OTU 1 seq prokMSA_id:31800 Z95728.1 Holophaga/Acidobacterium phylum clone iii1-15 2.2.5.1.1.1.569 OTU 1 seq prokMSA_id:23209 Z95724.1 Holophaga/Acidobacterium phylum clone ii3-12 2.2.5.1.1.1.642 OTU 1 seq prokMSA_id:22391 Z95710.1 Holophaga/Acidobacterium phylum clone 32-10 2.2.5.1.1.1.66 OTU 1 seq prokMSA_id:75652 AJ532720.1 uranium mining waste pile clone JG34-KF-135 2.2.5.1.1.1.706 OTU 20 seqs prokMSA_id:1807 Y12597.1 Drentse grassland soil Netherlands clone DA008 prokMSA_id:1820 Z95716.1 soil clone RB126 prokMSA_id:28281 AJ252657.1 Agricultural soil SC-I-79 () clone SC-I-79 prokMSA_id:40242 AJ252624.1 Agricultural soil SC-I-21 () clone SC-I-21 prokMSA_id:43082 AJ252654.1 Agricultural soil SC-I-76 () clone SC-I-76 prokMSA_id:48016 Z95736.1 Holophaga/Acidobacterium phylum clone mb2431 prokMSA_id:74543 AJ252616.1 Agricultural soil SC-I-13 () clone SC-I-13 prokMSA_id:75545 AJ534635.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-99 prokMSA_id:75999 AJ532719.1 uranium mining waste pile clone JG34-KF-113 prokMSA_id:76022 AJ532723.1 uranium mining waste pile clone JG34-KF-337 prokMSA_id:76897 AJ532722.1 uranium mining waste pile clone JG34-KF-257 prokMSA_id:78582 AJ536875.1 uranium mining waste pile soil sample clone JG30a-KF-145 sp. prokMSA_id:88876 AY289378.1 soil clone DS-231 prokMSA_id:93333 AJ582048.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-72 prokMSA_id:104490 AY212587.1 water 10 m downstream manure clone 137ds10 prokMSA_id:106465 AY395347.1 pasture soil clone EB1028 prokMSA_id:112900 AY921919.1 farm soil adjacent to silage storage bunker clone AKYG811 prokMSA_id:113121 AY921655.1 farm soil adjacent to silage storage bunker clone AKYG462 prokMSA_id:113185 AY921692.1 farm soil adjacent to silage storage bunker clone AKYG641 prokMSA_id:114300 AY921656.1 farm soil adjacent to silage storage bunker clone AKYH685 2.2.5.1.1.1.834 OTU 6 seqs prokMSA_id:1815 Z95733.1 soil clone mb1228 prokMSA_id:17667 Z95734.1 Holophaga/Acidobacterium phylum clone mb2424 prokMSA_id:18226 Z95731.1 Holophaga/Acidobacterium phylum clone iii3-7 prokMSA_id:20725 AF423235.1 soil clone 192-2 prokMSA_id:71241 AF280856.1 bioreactor clone mle1-25 prokMSA_id:105472 AB186883.1 polychlorinated dioxin dechlorinating microcosm clone TSBW13 2.2.5.1.1.1.897 OTU 1 seq prokMSA_id:84221 AY221071.1 Mammoth cave clone CCM8b 2.2.5.1.1.1.987 OTU 1 seq prokMSA_id:76119 AJ534636.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-200 bacterium 2.2.5.1.1.1.990 OTU 1 seq prokMSA_id:28512 AF234142.1 Sturt arid-zone soil clone #0319-7F19 2.2.6 Acidobacteria-7 4 seqs 2.2.6.1 Unclassified 4 seqs 2.2.6.1.1 Unclassified 4 seqs 2.2.6.1.1.1 sf_1 4 seqs 2.2.6.1.1.1.113 OTU 1 seq prokMSA_id:1718 Z95729.1 soil clone iii1-8 2.2.6.1.1.1.151 OTU 1 seq prokMSA_id:1728 Z95713.1 soil clone 32-20 2.2.6.1.1.1.588 OTU 2 seqs prokMSA_id:1719 AJ009461.1 TCB-transforming consortium clone SJA-36 prokMSA_id:84306 AY208806.1 cave microbial mats clone LKC2.127-11 2.2.7 Acidobacteria-9 1 seq 2.2.7.1 Unclassified 1 seq 2.2.7.1.1 Unclassified 1 seq 2.2.7.1.1.1 sf_1 1 seq 2.2.7.1.1.1.704 OTU 1 seq prokMSA_id:60180 AJ347029.1 sponge clone TK29 2.2.8 Acidobacteria 164 seqs 2.2.8.1 Acidobacteriales 163 seqs 2.2.8.1.1 Acidobacteriaceae 163 seqs 2.2.8.1.1.1 sf_14 145 seqs 2.2.8.1.1.1.1040 OTU 1 seq prokMSA_id:46967 AF337869.2 gold mine clone D15 2.2.8.1.1.1.105 OTU 1 seq prokMSA_id:78237 AJ535239.1 marine sediment above hydrate ridge clone Hyd24-44 sp. 2.2.8.1.1.1.176 OTU 1 seq prokMSA_id:75775 AJ519387.1 uranium mining waste pile clone JG37-AG-112 sp. 2.2.8.1.1.1.201 OTU 1 seq prokMSA_id:1732 X77215.1 Holophaga foetida 2.2.8.1.1.1.204 OTU 1 seq prokMSA_id:1733 AJ009478.1 anaerobic TCB-transforming consortium clone SJA-87 2.2.8.1.1.1.208 OTU 1 seq prokMSA_id:76766 AJ519665.1 uranium mill tailings soil sample clone GuBH2-AD-9 sp. 2.2.8.1.1.1.209 OTU 1 seq prokMSA_id:76566 AJ519367.1 uranium mining waste pile clone JG37-AG-29 sp. 2.2.8.1.1.1.271 OTU 1 seq prokMSA_id:1808 Z95726.1 soil clone ii3-36 2.2.8.1.1.1.274 OTU 1 seq prokMSA_id:75044 AJ519379.1 uranium mining waste pile clone JG37-AG-73 sp. 2.2.8.1.1.1.386 OTU 1 seq prokMSA_id:1736 U41563.1 "Geothrix fermentans" 2.2.8.1.1.1.396 OTU 1 seq prokMSA_id:1833 Y07586.1 soil clone DA023 2.2.8.1.1.1.401 OTU 1 seq prokMSA_id:1769 U68644.1 Amazon clone P8 2.2.8.1.1.1.508 OTU 1 seq prokMSA_id:75917 AJ519382.1 uranium mining waste pile clone JG37-AG-81 sp. 2.2.8.1.1.1.541 OTU 1 seq prokMSA_id:76467 AJ519667.1 uranium mill tailings soil sample clone GuBH2-AG-47 sp. 2.2.8.1.1.1.548 OTU 1 seq prokMSA_id:76925 AJ519666.1 uranium mill tailings soil sample clone GuBH2-AD-16 sp. 2.2.8.1.1.1.582 OTU 1 seq prokMSA_id:65464 AY102321.1 heavy metal-contaminated soil clone a13114 2.2.8.1.1.1.591 OTU 1 seq prokMSA_id:73910 AF385537.1 swab advanced noma lesion clone CA002 2.2.8.1.1.1.6335 OTU 1 seq prokMSA_id:63241 AF523984.1 forested wetland clone FW45 2.2.8.1.1.1.6350 OTU 1 seq prokMSA_id:58105 AF498719.1 soil isolate Ellin337 2.2.8.1.1.1.6353 OTU 1 seq prokMSA_id:58081 AF498753.1 soil isolate Ellin371 2.2.8.1.1.1.6356 OTU 1 seq prokMSA_id:69818 AF523985.1 forested wetland clone FW47 2.2.8.1.1.1.6364 OTU 13 seqs prokMSA_id:63235 AF523989.1 forested wetland clone FW3 prokMSA_id:69911 AF498724.1 soil isolate Ellin342 prokMSA_id:78832 AJ536863.1 uranium mining waste pile soil sample clone JG30-KF-C5 sp. prokMSA_id:98964 AY395369.1 pasture soil clone EB1050 prokMSA_id:100017 AB179497.1 sedimentary rock clone MIZ06 prokMSA_id:102185 AY395354.1 pasture soil clone EB1035 prokMSA_id:103853 AY395390.1 pasture soil clone EB1071 prokMSA_id:110291 AJ617858.1 oxic-anoxic interphase flooded paddy soil clone D282110 prokMSA_id:111405 AY234723.1 soil isolate Ellin6071 prokMSA_id:111410 AY234752.1 soil isolate Ellin6100 prokMSA_id:111948 AY234767.1 soil isolate Ellin6115 prokMSA_id:112288 AY234728.1 Solibacter usitatus Ellin6076 prokMSA_id:114075 AY913473.1 forest soil clone DUNssu273 2.2.8.1.1.1.6366 OTU 4 seqs prokMSA_id:3730 X97098.1 peat bog clone TM2 prokMSA_id:42606 AJ292579.1 PCB-polluted soil clone WD243 prokMSA_id:45591 AJ292578.1 PCB-polluted soil clone WD228 prokMSA_id:73733 AF498733.1 soil isolate Ellin351 2.2.8.1.1.1.6368 OTU 88 seqs prokMSA_id:3708 Y11629.1 zinc-polluted soil clone 611 prokMSA_id:3709 Y11632.1 zinc-polluted soil clone 614 prokMSA_id:3724 Z73364.1 species (clone Ep_T1.153) clone Ep_T1.153 prokMSA_id:3727 X68464.1 Actinomycetales MC 13 prokMSA_id:3734 Z73365.1 species (clone Ep_T1.154) clone Ep_T1.154 prokMSA_id:14397 AJ000986.2 soil clone DA038 prokMSA_id:16327 AF200698.1 soil clone UA2 prokMSA_id:24040 AJ292577.1 PCB-polluted soil clone WD226 prokMSA_id:25003 AJ292581.1 PCB-polluted soil clone WD247 prokMSA_id:31221 AF200699.1 soil clone UA3 prokMSA_id:37457 AF200696.1 soil clone UA1 prokMSA_id:41797 AF465659.1 Acidobacterium group clone YNPRH72A prokMSA_id:47557 AJ292586.1 PCB-polluted soil clone WD276 prokMSA_id:51223 AJ292574.1 PCB-polluted soil clone WD213 prokMSA_id:56082 AF523895.1 forested wetland clone RCP1-32 prokMSA_id:58117 AF498709.1 soil isolate Ellin327 prokMSA_id:58136 AF498692.1 soil isolate Ellin310 prokMSA_id:61405 AY043842.1 forest soil clone SMS9.16WL prokMSA_id:63242 AF523983.1 forested wetland clone FW43 prokMSA_id:63246 AF523977.1 forested wetland clone FW116 prokMSA_id:63248 AF523982.1 forested wetland clone FW111 prokMSA_id:63319 AF523897.1 forested wetland clone RCP2-4 prokMSA_id:63320 AF523898.1 forested wetland clone RCP2-97 prokMSA_id:63321 AF523894.1 forested wetland clone RCP1-101 prokMSA_id:63322 AF523893.1 forested wetland clone RCP2-3 prokMSA_id:63323 AF523892.1 forested wetland clone RCP1-43 prokMSA_id:69821 AF498708.1 soil isolate Ellin326 prokMSA_id:73492 AF498693.1 soil isolate Ellin311 prokMSA_id:75133 AJ519365.1 uranium mining waste pile clone JG37-AG-9 sp. prokMSA_id:76453 AJ519378.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-67 prokMSA_id:76740 AJ534633.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-54 prokMSA_id:76986 AJ519371.1 uranium mining waste pile clone JG37-AG-42 sp. prokMSA_id:77412 AF524860.1 sphagnum peat bog clone K-5b2 prokMSA_id:84886 AY274128.1 gold mine tailings clone D118 prokMSA_id:88321 AY245460.1 Mono Lake clone ML23_ANME2 prokMSA_id:93256 AJ582046.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-69 prokMSA_id:98894 AY395453.1 pasture soil clone EB1134 prokMSA_id:101361 AY395421.1 pasture soil clone EB1102 prokMSA_id:102323 AY395427.1 pasture soil clone EB1108 prokMSA_id:102569 AY395441.1 pasture soil clone EB1122 prokMSA_id:104326 AY425773.1 volcanic deposit 1790 clone 1790-5 prokMSA_id:104834 AY395324.1 pasture soil clone EB1005 prokMSA_id:106724 AY395361.1 pasture soil clone EB1042 prokMSA_id:107408 AY395450.1 pasture soil clone EB1131 prokMSA_id:109694 AJ617853.1 oxic-anoxic interphase flooded paddy soil clone D02303 prokMSA_id:110892 AY673303.1 Acidobacteria Ellin7137 prokMSA_id:111584 AY234609.1 soil isolate Ellin5258 prokMSA_id:111637 AY234588.1 soil isolate Ellin5237 prokMSA_id:111755 AY234573.1 soil isolate Ellin5222 prokMSA_id:111851 AY234475.1 soil isolate Ellin5058 prokMSA_id:111882 AY234636.1 soil isolate Ellin5285 prokMSA_id:111892 AY234640.1 soil isolate Ellin5289 prokMSA_id:111903 AY723961.2 soil clone DUNssu002 prokMSA_id:111942 AY234473.1 soil isolate Ellin5056 prokMSA_id:111986 AY723990.2 soil clone DUNssu005 prokMSA_id:111994 AY234576.1 soil isolate Ellin5225 prokMSA_id:112041 AY234418.1 soil isolate Ellin5001 prokMSA_id:112156 AY234726.1 soil isolate Ellin6074 prokMSA_id:112195 AY234590.1 soil isolate Ellin5239 prokMSA_id:112231 AY234512.1 soil isolate Ellin5095 prokMSA_id:112294 AY234592.1 soil isolate Ellin5241 prokMSA_id:112314 AY234523.1 soil isolate Ellin5106 prokMSA_id:112338 AY234608.1 soil isolate Ellin5257 prokMSA_id:112768 AY913605.1 forest soil clone DUNssu465 prokMSA_id:112838 AY913297.1 forest soil clone DUNssu075 prokMSA_id:112907 AY913389.1 forest soil clone DUNssu183 prokMSA_id:112921 AY913319.1 forest soil clone DUNssu096 prokMSA_id:112935 AY913392.1 forest soil clone DUNssu186 prokMSA_id:113075 AY913612.1 forest soil clone DUNssu473 prokMSA_id:113106 AY913603.1 forest soil clone DUNssu463 prokMSA_id:113138 AY913317.1 forest soil clone DUNssu092 prokMSA_id:113499 AY913530.1 forest soil clone DUNssu355 prokMSA_id:113517 AY913542.1 forest soil clone DUNssu369 prokMSA_id:113520 AY913535.1 forest soil clone DUNssu362 prokMSA_id:113921 AY913616.1 forest soil clone DUNssu477 prokMSA_id:113959 AY913298.1 forest soil clone DUNssu077 prokMSA_id:114020 AY913476.1 forest soil clone DUNssu276 prokMSA_id:114032 AY913607.1 forest soil clone DUNssu467 prokMSA_id:114097 AY913279.1 forest soil clone DUNssu057 prokMSA_id:114122 AY913525.1 forest soil clone DUNssu349 prokMSA_id:114172 AY913620.1 forest soil clone DUNssu481 prokMSA_id:114214 AY913551.1 forest soil clone DUNssu379 prokMSA_id:114230 AY913619.1 forest soil clone DUNssu480 prokMSA_id:114255 AY913332.1 forest soil clone DUNssu127 prokMSA_id:114272 AY913532.1 forest soil clone DUNssu359 prokMSA_id:114314 AY913329.1 forest soil clone DUNssu124 prokMSA_id:114319 AY913521.1 forest soil clone DUNssu345 prokMSA_id:114338 AY913242.1 forest soil clone DUNssu021 2.2.8.1.1.1.6378 OTU 3 seqs prokMSA_id:3704 D26171.1 Acidobacterium capsulatum prokMSA_id:3746 X97100.1 TM13 prokMSA_id:51399 AF165271.1 closest relative is Acidobacterium capsulatum clone 2.2.8.1.1.1.6390 OTU 1 seq prokMSA_id:3667 AF013515.2 forest soil clone C002 2.2.8.1.1.1.6405 OTU 1 seq prokMSA_id:74896 AJ534632.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-31 bacterium 2.2.8.1.1.1.6407 OTU 1 seq prokMSA_id:84133 AY242653.1 soil clone Tc120-F03 2.2.8.1.1.1.6410 OTU 1 seq prokMSA_id:63318 AF523899.1 forested wetland clone RCP2-102 2.2.8.1.1.1.6412 OTU 1 seq prokMSA_id:3735 AF047646.1 acid mine drainage clone TRB82 2.2.8.1.1.1.6421 OTU 1 seq prokMSA_id:38048 AJ292576.1 PCB-polluted soil clone WD217 2.2.8.1.1.1.6424 OTU 1 seq prokMSA_id:77390 AF524859.1 sphagnum peat bog clone K-5b10 2.2.8.1.1.1.6425 OTU 1 seq prokMSA_id:60581 AF407719.1 Great Artesian Basin clone B27 2.2.8.1.1.1.6429 OTU 1 seq prokMSA_id:47645 AJ249099.1 DCP-dechlorinating consortium clone SHA-18 2.2.8.1.1.1.6438 OTU 1 seq prokMSA_id:3677 AJ009495.1 chlorobenzene-degrading consortium clone SJA-149 2.2.8.1.1.1.867 OTU 2 seqs prokMSA_id:17129 AF234695.1 sludge clone H3 prokMSA_id:45334 AF234731.1 sludge clone A34 2.2.8.1.1.1.89 OTU 1 seq prokMSA_id:75679 AJ519368.1 uranium mining waste pile clone JG37-AG-31 sp. 2.2.8.1.1.1.893 OTU 1 seq prokMSA_id:1857 Z95721.1 soil clone RB40 2.2.8.1.1.1.964 OTU 1 seq prokMSA_id:77004 AJ519392.1 uranium mining waste pile clone JG37-AG-145 sp. 2.2.8.1.1.1.994 OTU 1 seq prokMSA_id:77025 AJ519389.1 uranium mining waste pile clone JG37-AG-117 sp. 2.2.8.1.1.2 sf_15 1 seq 2.2.8.1.1.2.1052 OTU 1 seq prokMSA_id:41153 AF312219.1 South Africa: KwaZulu-Natal Province Pietermaritzburg clone Y14-5 bacterium 2.2.8.1.1.3 sf_16 1 seq 2.2.8.1.1.3.6414 OTU 1 seq prokMSA_id:61819 AF529350.1 PCE-contaminated site clone CLs73 2.2.8.1.1.4 sf_1 2 seqs 2.2.8.1.1.4.6371 OTU 1 seq prokMSA_id:3700 X68463.1 Actinomycetales MC 22 2.2.8.1.1.4.877 OTU 1 seq prokMSA_id:1851 U68684.1 Amazon clone P65 2.2.8.1.1.5 sf_6 14 seqs 2.2.8.1.1.5.6345 OTU 1 seq prokMSA_id:76368 AJ534634.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-77 bacterium 2.2.8.1.1.5.6359 OTU 2 seqs prokMSA_id:61838 AF529322.1 PCE-contaminated site clone CLi114 prokMSA_id:76027 AJ519377.1 uranium mining waste pile clone JG37-AG-61 sp. 2.2.8.1.1.5.6362 OTU 10 seqs prokMSA_id:3732 Y07646.1 grassland soil clone DA052 prokMSA_id:31615 AJ292580.1 PCB-polluted soil clone WD244 prokMSA_id:75894 AJ519364.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-5 prokMSA_id:76166 AJ519372.1 uranium mining waste pile clone JG37-AG-47 sp. prokMSA_id:93614 AJ582044.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-126 prokMSA_id:93694 AJ582045.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-132 prokMSA_id:93966 AJ582043.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-146 prokMSA_id:110786 AY673350.1 Acidobacteria Ellin7184 prokMSA_id:112106 AY234538.1 soil isolate Ellin5121 prokMSA_id:113118 AY913248.1 forest soil clone DUNssu029 2.2.8.1.1.5.6423 OTU 1 seq prokMSA_id:56406 AF523979.1 coal effluent wetland clone FW92 2.2.8.2 Holophagales 1 seq 2.2.8.2.1 Unclassified 1 seq 2.2.8.2.1.1 sf_1 1 seq 2.2.8.2.1.1.734 OTU 1 seq prokMSA_id:55664 AF529125.1 trichloroethene-contaminated site clone FTLM5 bacterium 2.2.9 Solibacteres 11 seqs 2.2.9.1 Unclassified 11 seqs 2.2.9.1.1 Unclassified 11 seqs 2.2.9.1.1.1 sf_1 11 seqs 2.2.9.1.1.1.6329 OTU 1 seq prokMSA_id:50491 AF465658.1 thermal soil clone YNPRH5A 2.2.9.1.1.1.6357 OTU 1 seq prokMSA_id:60816 AY118153.1 anaerobic benzene-degrading clone Cart-N4 2.2.9.1.1.1.6367 OTU 4 seqs prokMSA_id:62412 AF529104.1 TCE-contaminated site clone FTL227 prokMSA_id:63237 AF523988.1 forested wetland clone FW120 prokMSA_id:76339 AJ519380.1 uranium mining waste pile clone JG37-AG-74 sp. prokMSA_id:112744 AY922059.1 farm soil adjacent to silage storage bunker clone AKYG742 2.2.9.1.1.1.6375 OTU 1 seq prokMSA_id:16602 AJ292571.1 PCB-polluted soil clone WD205 2.2.9.1.1.1.6386 OTU 2 seqs prokMSA_id:26745 AJ292582.1 PCB-polluted soil clone WD254 prokMSA_id:31570 AJ292589.1 PCB-polluted soil clone WD292 2.2.9.1.1.1.6426 OTU 1 seq prokMSA_id:60585 AF407714.1 Great Artesian Basin clone B11 2.2.9.1.1.1.6444 OTU 1 seq prokMSA_id:3684 AF027004.1 hot spring clone OPB3 2.20 Fibrobacteres 4 seqs 2.20.1 Fibrobacteres 4 seqs 2.20.1.1 Fibrobacterales 4 seqs 2.20.1.1.1 Fibrobacteraceae 4 seqs 2.20.1.1.1.1 sf_1 4 seqs 2.20.1.1.1.1.6381 OTU 1 seq prokMSA_id:3577 AF018454.1 cow rumen clone 12-5 2.20.1.1.1.1.6384 OTU 1 seq prokMSA_id:3581 L35548.1 Fibrobacter species 2.20.1.1.1.1.6389 OTU 1 seq prokMSA_id:3591 L35547.1 Fibrobacter species 2.20.1.1.1.1.6422 OTU 1 seq prokMSA_id:63459 AJ496186.1 Fibrobacter succinogenes str. HM2 2.21 Firmicutes 6203 seqs 2.21.1 Anaerobranca 1 seq 2.21.1.1 Unclassified 1 seq 2.21.1.1.1 Unclassified 1 seq 2.21.1.1.1.1 sf_1 1 seq 2.21.1.1.1.1.4304 OTU 1 seq prokMSA_id:62673 AF507889.1 Mono Lake at depth 35m station 6 July 2000 clone ML635J-34 G+C 2.21.10 Unclassified 31 seqs 2.21.10.1 Unclassified 31 seqs 2.21.10.1.1 Unclassified 31 seqs 2.21.10.1.1.1 sf_10 2 seqs 2.21.10.1.1.1.4056 OTU 2 seqs prokMSA_id:15857 AF029394.1 Mycoplasma suis str. Zachary prokMSA_id:15859 U88565.1 Mycoplasma suis str. Illinois 2.21.10.1.1.2 sf_11 1 seq 2.21.10.1.1.2.3933 OTU 1 seq prokMSA_id:51516 AF429359.1 chicken intestinal s clone CCAJG3 2.21.10.1.1.3 sf_5 2 seqs 2.21.10.1.1.3.3807 OTU 1 seq prokMSA_id:14919 AF142888.1 clone EKHO-4 2.21.10.1.1.3.4008 OTU 1 seq prokMSA_id:15694 AF058006.1 PCB-dechlorinating enrichment 2.21.10.1.1.4 sf_6 2 seqs 2.21.10.1.1.4.2393 OTU 1 seq prokMSA_id:13701 AF142824.1 clone BURTON-4 2.21.10.1.1.4.2474 OTU 1 seq prokMSA_id:13699 AF142966.1 clone TAYNAYA-18 2.21.10.1.1.5 sf_7 1 seq 2.21.10.1.1.5.2343 OTU 1 seq prokMSA_id:13676 AF142890.1 clone EKHO-6 2.21.10.1.1.6 sf_8 22 seqs 2.21.10.1.1.6.141 OTU 1 seq prokMSA_id:19343 AF407393.1 MCB-contaminated groundwater-treating reactor clone RB9C2 2.21.10.1.1.6.2433 OTU 2 seqs prokMSA_id:17524 AF282252.1 Ferribacter thermoautotrophicus str. JW/JH-Fiji-2 prokMSA_id:21124 AF282253.1 Ferribacter thermoautotrophicus str. KA2 2.21.10.1.1.6.3405 OTU 4 seqs prokMSA_id:14344 AF077672.1 Pasteuria penetrans P-20; P-100 prokMSA_id:38647 AF375881.1 Pasteuria penetrans prokMSA_id:62225 AY123969.1 Pasteuria penetrans str. 98-35 prokMSA_id:68454 AY081917.1 USA: Florida clone Nf3 2.21.10.1.1.6.3447 OTU 1 seq prokMSA_id:32515 AF369646.1 Halobacillus sp. str. AB007 2.21.10.1.1.6.3853 OTU 1 seq prokMSA_id:14343 U34688.1 Daphnia endosymbiotic bacterium 2.21.10.1.1.6.3862 OTU 1 seq prokMSA_id:17688 AF134868.2 Pasteuria sp. NA North American 2.21.10.1.1.6.3938 OTU 1 seq prokMSA_id:27932 L26995.1 Phytoplasma sp. str. Apple proliferation 2.21.10.1.1.6.3989 OTU 3 seqs prokMSA_id:18103 L27041.1 Peach yel leafroll mycoplasmalike organism ( ) prokMSA_id:18863 L27048.1 Western X mycoplasmalike organism ( ) prokMSA_id:43388 L27009.1 Choke cherry X phytoplasma 2.21.10.1.1.6.4033 OTU 1 seq prokMSA_id:21474 L27045.1 Beet leafhopper transmitted virescence phytoplasma 2.21.10.1.1.6.4043 OTU 1 seq prokMSA_id:15686 L27032.1 Paulownia witches'-broom phytoplasma 2.21.10.1.1.6.4052 OTU 1 seq prokMSA_id:15601 L27025.1 Candidatus Phytoplasma ulmi 2.21.10.1.1.6.4059 OTU 1 seq prokMSA_id:44020 L26997.1 Apricot chlorotic leafroll phytoplasma 2.21.10.1.1.6.4105 OTU 1 seq prokMSA_id:31476 L27007.1 Blueberry stunt phytoplasma 2.21.10.1.1.6.4536 OTU 2 seqs prokMSA_id:62670 AF507891.1 Mono Lake at depth 35m station 6 July 2000 clone ML635J-14 G+C prokMSA_id:62672 AF507890.1 Mono Lake at depth 35m station 6 July 2000 clone ML635J-38 G+C 2.21.10.1.1.6.546 OTU 1 seq prokMSA_id:20039 AF282254.1 Ferribacter thermoautotrophicus 2.21.10.1.1.7 sf_9 1 seq 2.21.10.1.1.7.4075 OTU 1 seq prokMSA_id:51691 AJ408176.1 equine large intestine clone ML30 2.21.2 Bacilli 3200 seqs 2.21.2.1 Bacillales 2012 seqs 2.21.2.1.1 Alicyclobacillaceae 32 seqs 2.21.2.1.1.1 sf_1 32 seqs 2.21.2.1.1.1.3259 OTU 1 seq prokMSA_id:44616 AB042055.1 Alicyclobacillus herbarius str. CP-1 2.21.2.1.1.1.3352 OTU 2 seqs prokMSA_id:23447 AB059677.1 Alicyclobacillus sp. str. TA 67T prokMSA_id:58498 AB076660.1 Alicyclobacillus acidiphilus str. TA-67 2.21.2.1.1.1.3368 OTU 2 seqs prokMSA_id:58325 AY140235.1 Gram-positive iron-oxidizing acidophile isolate str. Y0010 acidophile prokMSA_id:107003 AY529492.1 geothermal site isolate str. G1 2.21.2.1.1.1.3369 OTU 9 seqs prokMSA_id:14337 AB004581.1 Alicyclobacillus sp. str. KHA-31 prokMSA_id:18771 AB060163.1 Alicyclobacillus sp. str. KHC 3 prokMSA_id:23797 AJ133635.1 Alicyclobacillus sp. str. FR-6 prokMSA_id:30162 AJ133634.1 Alicyclobacillus sp. str. FR-3 prokMSA_id:34693 AB059666.1 Alicyclobacillus sp. subsp. genomic species 1 str. DSM 6481 DSM prokMSA_id:38406 AB059665.1 Alicyclobacillus acidocaldarius subsp. genomic species 1 str. DSM 455 prokMSA_id:41120 AB060165.1 Alicyclobacillus sp. str. MIH 332 prokMSA_id:67142 AB084128.1 Alicyclobacillus sendaiensis str. NTAP-1 prokMSA_id:76073 AY160968.1 Alicyclobacillus sp. str. PK-1 2.21.2.1.1.1.3376 OTU 1 seq prokMSA_id:25597 AB059675.1 Alicyclobacillus acidoterrestris str. DSM 2498 2.21.2.1.1.1.3487 OTU 4 seqs prokMSA_id:14345 X60743.1 Alicyclobacillus acidoterrestris prokMSA_id:32908 AB059672.1 Alicyclobacillus acidocaldarius str. DSM 451 prokMSA_id:34592 AB059673.1 Alicyclobacillus acidocaldarius str. DSM 452 prokMSA_id:55934 AJ496806.1 Alicyclobacillus acidocaldarius str. DSM 446 2.21.2.1.1.1.3578 OTU 2 seqs prokMSA_id:16300 AY007662.1 "Sulfobacillus"-like str.GSM prokMSA_id:24598 AF450135.1 Alicyclobacillus sp. str. AGC-2 2.21.2.1.1.1.3597 OTU 5 seqs prokMSA_id:14346 X51928.1 Alicyclobacillus cycloheptanicus prokMSA_id:21935 AB042059.1 Alicyclobacillus cycloheptanicus str. DSM 4006T prokMSA_id:40466 AB059681.1 Alicyclobacillus cycloheptanicus str. DSM 4007 prokMSA_id:45506 AB059680.1 Alicyclobacillus cycloheptanicus str. DSM 4005 prokMSA_id:63190 X52489.1 Alicyclobacillus cycloheptanicus str. SCH 2.21.2.1.1.1.3646 OTU 1 seq prokMSA_id:14393 Y07608.2 Drentse grassland soil clone DA113 2.21.2.1.1.1.3674 OTU 1 seq prokMSA_id:51329 AY040739.1 Gram-positive iron-oxidizing acidophile isolate str. SLC66 acidophile 2.21.2.1.1.1.3694 OTU 1 seq prokMSA_id:29823 AB052970.1 this relatively close relationship to Alicyclobacillus and Sulfobacillus. However there is no report on iron-oxidizing these genera bacterium 2.21.2.1.1.1.3864 OTU 1 seq prokMSA_id:14347 X60741.1 Alicyclobacillus acidocaldarius 2.21.2.1.1.1.3915 OTU 2 seqs prokMSA_id:14331 Z26933.1 Bacillus tusciae prokMSA_id:85455 AB042062.1 Bacillus tusciae str. IFO 15312T 2.21.2.1.10 Unclassified 4 seqs 2.21.2.1.10.1 sf_3 4 seqs 2.21.2.1.10.1.3372 OTU 1 seq prokMSA_id:25505 AF320336.1 USA: Hillside Springs Yellowstone clone hs2_43 2.21.2.1.10.1.3456 OTU 1 seq prokMSA_id:75255 AY150866.1 disturbed surface soil clone glen99_20 2.21.2.1.10.1.3549 OTU 1 seq prokMSA_id:14382 U68626.1 Amazon clone M45 2.21.2.1.10.1.3743 OTU 1 seq prokMSA_id:66467 AY100625.1 clone cvf77034 2.21.2.1.2 Bacillaceae 1243 seqs 2.21.2.1.2.1 sf_1 1243 seqs 2.21.2.1.2.1.1050 OTU 4 seqs prokMSA_id:14647 D16268.1 Bacillus firmus prokMSA_id:106676 AY573046.1 Bacillus sp. str. ARCTIC-P30 prokMSA_id:109926 AJ717384.1 Bacillus firmus CV93b prokMSA_id:111026 AJ717383.1 Bacillus firmus CV93a 2.21.2.1.2.1.234 OTU 13 seqs prokMSA_id:14528 Z26925.1 "Bacillus caldovelox" prokMSA_id:14543 Z26923.1 Bacillus thermoleovorans prokMSA_id:14551 Z26924.1 "Bacillus caldolyticus" prokMSA_id:23576 AJ293805.1 Bacillus vulcani str. 3S-1 prokMSA_id:28593 AY074879.1 Geobacillus thermoleovorans str. T4 prokMSA_id:35138 AY062017.1 Bacillus sp. G2 prokMSA_id:57566 AY166603.1 Geobacillus sp. str. T1 prokMSA_id:60458 AY044055.1 Geobacillus lituanicus str. N-3 prokMSA_id:70432 AJ489330.1 Geobacillus thermoleovorans I80 prokMSA_id:70679 AJ489328.1 Geobacillus thermoleovorans T70 prokMSA_id:71742 AJ489329.1 Geobacillus thermoleovorans T80 prokMSA_id:78662 AJ536599.1 Geobacillus thermoleovorans CCR11 prokMSA_id:85270 AY248717.1 Geobacillus thermoleovorans str. G1 2.21.2.1.2.1.246 OTU 1 seq prokMSA_id:85211 AJ509006.1 Bacillus sp. 6160m-C1 2.21.2.1.2.1.283 OTU 5 seqs prokMSA_id:14555 Z26926.1 Bacillus thermocatenulatus prokMSA_id:42405 AJ294817.1 Geobacillus stearothermophilus str. DSM 22T prokMSA_id:60459 AY044052.1 Geobacillus stearothermophilus str. 3 prokMSA_id:60460 AY044053.1 Geobacillus stearothermophilus str. 32A prokMSA_id:74615 AY044054.1 Geobacillus stearothermophilus str. 28 2.21.2.1.2.1.305 OTU 2 seqs prokMSA_id:14564 M77488.1 Bacillus thermoleovorans prokMSA_id:14567 X60618.1 Geobacillus kaustophilus 2.21.2.1.2.1.3249 OTU 23 seqs prokMSA_id:14518 Z26932.1 "Bacillus flavothermus" prokMSA_id:14519 AF004589.1 Anoxybacillus flavithermus str. DSM2641 prokMSA_id:14520 AJ010478.1 Bacillus sp. str. k-1 prokMSA_id:14521 AF001960.1 Anoxybacillus flavithermus AB01 prokMSA_id:14522 AF001961.1 Anoxybacillus flavithermus AB02 prokMSA_id:14524 AF001963.1 Anoxybacillus ayderensis str. AB04 prokMSA_id:14525 AF001964.1 Anoxybacillus flavithermus AB05 prokMSA_id:14526 AB015568.1 deep-sea sediment clone BD5-12 prokMSA_id:41783 U46747.1 Bacillus sp. OS-ac-18 str. OS isolate ac-18 OS-ac-18 prokMSA_id:66045 AF510985.1 Anoxybacillus kamchatkensis str. JW/VK-KG4 prokMSA_id:78530 AY198416.1 Bacillus sp. str. YMY1010 prokMSA_id:83767 AY248708.1 Anoxybacillus gonensis str. A7 prokMSA_id:84072 AY248707.1 Anoxybacillus gonensis str. A4 prokMSA_id:84979 AY248709.1 Anoxybacillus kestanbolensis str. K1 prokMSA_id:85315 AY248706.1 Anoxybacillus gonensis str. A2 prokMSA_id:85346 AY248710.1 Anoxybacillus kestanbolensis str. K2 prokMSA_id:85404 AY248711.1 Anoxybacillus kestanbolensis str. K4 prokMSA_id:102930 AJ586360.1 Anoxybacillus flavithermus str. R-18857 prokMSA_id:104518 AY672762.1 Anoxybacillus flavithermus str. B prokMSA_id:104673 AY672763.1 Anoxybacillus flavithermus str. D prokMSA_id:106630 AY531640.1 sulfide-rich hot spring enrichments 65 degrees C clone LNE-3 prokMSA_id:107801 AJ586357.1 Anoxybacillus flavithermus str. R-18839 prokMSA_id:108674 AY770577.1 Anoxybacillus flavithermus 2.21.2.1.2.1.3262 OTU 329 seqs prokMSA_id:14925 X55059.1 Bacillus anthracis prokMSA_id:14926 X55063.1 Bacillus cereus prokMSA_id:14927 X55060.1 Bacillus cereus prokMSA_id:14928 D16266.1 Bacillus cereus prokMSA_id:14929 Z84575.1 Bacillus cereus str. WSBC10030 prokMSA_id:14930 Z84576.1 Bacillus cereus str. WSBC10037 prokMSA_id:14931 Z84577.1 Bacillus cereus str. WSBC10201 prokMSA_id:14932 Z84578.1 Bacillus cereus str. WSBC10204 prokMSA_id:14933 Z84579.1 Bacillus cereus str. WSBC10206 prokMSA_id:14934 Z84580.1 Bacillus cereus str. WSBC10210 prokMSA_id:14935 Z84581.1 Bacillus cereus str. ATCC 27877 prokMSA_id:14936 Z84589.1 Bacillus cereus str. WSBC10030 prokMSA_id:14937 Y18473.1 Bacillus thuringiensis str. WS2623 prokMSA_id:14938 Z84582.1 Bacillus mycoides str. MWS5303-1-4 prokMSA_id:14939 Z84583.1 Bacillus mycoides str. MWS5303-2-51 prokMSA_id:14940 Z84584.1 Bacillus thuringiensis str. WS 261 prokMSA_id:14941 Z84585.1 Bacillus thuringiensis str. WS 2617 prokMSA_id:14942 Z84586.1 Bacillus thuringiensis str. WS 2618 prokMSA_id:14943 Z84587.1 Bacillus thuringiensis str. WS 2625 prokMSA_id:14944 Z84588.1 Bacillus thuringiensis str. WS 2626 prokMSA_id:14945 Z84590.1 Bacillus cereus str. WSBC10030 prokMSA_id:14946 Z84591.1 Bacillus mycoides str. MWS5303-1-4 prokMSA_id:14947 Z84593.1 Bacillus thuringiensis str. WS 2614 prokMSA_id:14948 Z84594.1 Bacillus thuringiensis str. WS 2617 prokMSA_id:14949 AF144645.1 Bacillus mycoides str. DRC1 prokMSA_id:14950 AB003391.1 bovine rumen isolate str. sp6 prokMSA_id:14951 AF013121.1 Bacillus pseudomycoides prokMSA_id:14952 Y15466.1 Bacillus sp. str. JJ#1 prokMSA_id:14955 AF076031.1 Bacillus cereus prokMSA_id:14956 AB002640.1 G+C gram-positive HTA484 prokMSA_id:14957 AF027659.1 Bacillus sp. str. BSID723 prokMSA_id:16497 AF290561.1 Bacillus sp. str. AH 678 prokMSA_id:17205 AF417874.1 Bacillus sp. YSS/2001-3 prokMSA_id:18433 AB021192.1 Bacillus mycoides str. ATCC6462 prokMSA_id:19663 AF290546.1 Bacillus cereus str. ATCC11778 prokMSA_id:20169 AF390088.1 Bacillus sp. str. W-21 prokMSA_id:20900 AF290558.1 Bacillus sp. str. AH 628 prokMSA_id:22695 AF290562.1 Bacillus sp. str. AH 526 prokMSA_id:24287 AF290548.1 Bacillus cereus str. ATCC31293 prokMSA_id:24784 AF406633.1 Bacillus sp. str. CMB03 prokMSA_id:25241 AF290554.1 Bacillus cereus str. AH 521 prokMSA_id:25668 AF206326.1 Bacillus cereus prokMSA_id:25780 AF227848.2 Bacillus sp. str. 82344 prokMSA_id:25802 AF176321.1 Bacillus anthracis str. Sterne prokMSA_id:25927 AY039397.1 Earthworm burrow isolate str. B36D1 prokMSA_id:26368 AB021199.1 Bacillus weihenstephanensis str. DSM11821 prokMSA_id:26371 AF155951.1 Bacillus anthracis prokMSA_id:28455 AF385082.1 Bacillus sp. str. F26 prokMSA_id:28561 AF390086.1 Bacillus cereus str. S-5 prokMSA_id:28652 AF155950.1 Bacillus anthracis str. Ames prokMSA_id:30444 AB074697.1 Japan:Lake Biwa isolate str. D-Su(1)-21B prokMSA_id:30826 AJ288157.1 Bacillus cereus Ki 2l prokMSA_id:31673 AF176322.1 Bacillus cereus str. T prokMSA_id:34617 AF274244.1 Bacillus cereus str. A6 prokMSA_id:35163 AF155957.1 Bacillus mycoides str. 10206 prokMSA_id:35362 AY043083.1 Bacillus anthracis prokMSA_id:35737 AY048782.1 Bacillus sp. str. P16 prokMSA_id:35857 AF155953.1 Bacillus thuringiensis str. 4042 prokMSA_id:36427 AF429355.1 chicken intestinal s clone CCAJG117 prokMSA_id:37153 AF290547.1 Bacillus cereus ATCC 14579 str. ATCC14579 prokMSA_id:38172 AY039403.1 Earthworm cast isolate str. C19D1 prokMSA_id:38433 AJ316312.1 Bacillus sp. str. LMG 20247 prokMSA_id:39453 AF234860.1 Bacillus mycoides str. FO-080 prokMSA_id:39601 AF290560.1 Bacillus sp. str. AH 665 prokMSA_id:40803 AF393658.1 Bacillus thuringiensis str. DM55 prokMSA_id:44252 AF290559.1 Bacillus sp. str. AH 648 prokMSA_id:45153 AB067810.1 Bacillus sp. str. KPU 0013 prokMSA_id:45462 AY037682.1 earthworm cast clone C027 prokMSA_id:46656 AF155955.1 Bacillus thuringiensis str. B8 prokMSA_id:47699 AF155952.1 Bacillus cereus str. 9620 prokMSA_id:52128 AF155956.1 Bacillus mycoides str. 6462 prokMSA_id:54066 AY038926.1 Marine isolate str. SE98 prokMSA_id:55839 AF479367.1 glacial ice isolate str. SB12K-9-4 prokMSA_id:56041 AB050630.1 Bacillus cereus str. Tim-r01 prokMSA_id:56330 AJ489353.1 Bacillus sp. str. Lgg10.14 prokMSA_id:58975 AY138277.1 Bacillus cereus str. 2000031503 prokMSA_id:58976 AY138279.1 Bacillus cereus str. 2000031513 prokMSA_id:58977 AY138278.1 Bacillus cereus str. G3317 prokMSA_id:58978 AY138274.1 Bacillus cereus str. 2000031498 prokMSA_id:58979 AY138275.1 Bacillus cereus str. LRN prokMSA_id:58980 AY138276.1 Bacillus cereus str. 2000031491 prokMSA_id:59283 AJ508706.1 Bacillus cereus MBRG 4.21 prokMSA_id:60008 AY129651.1 Bacillus cereus str. AL1 prokMSA_id:60367 AF513473.1 Bacillaceae isolate str. PH27B prokMSA_id:60443 AY131220.1 Bacillus sp. str. Fa25 prokMSA_id:62451 AY124766.1 Bacillus sp. str. FP1/2002 prokMSA_id:63007 AF526899.1 Bacillus cereus str. 83-5c prokMSA_id:63455 AF522353.1 Bacillus cereus str. SH 01 prokMSA_id:64004 AJ491827.1 Bacillus mycoides str. B10 prokMSA_id:64703 AJ489378.1 Bacillus sp. str. Lgg20.7 prokMSA_id:64712 AJ489361.1 Bacillus sp. str. Lgg15.5 prokMSA_id:64713 AJ489364.1 Bacillus sp. str. Lgg15.8 prokMSA_id:64714 AJ489360.1 Bacillus sp. str. Lgg15.4 prokMSA_id:64727 AJ489347.1 Bacillus sp. str. Lgg10.6 prokMSA_id:64730 AJ489340.1 Bacillus sp. str. Lgg5.10 prokMSA_id:66482 AY100608.1 clone cvf70075 prokMSA_id:66554 AY100527.1 clone cvf65109 prokMSA_id:67204 AF497257.1 Bacillus sp. str. BacB11 prokMSA_id:67209 AF497249.1 Bacillus sp. str. BacB3 prokMSA_id:67642 AJ438304.1 Bacillus sp. str. R-12866 prokMSA_id:67643 AJ438300.1 Bacillus sp. str. R-10947 prokMSA_id:68744 AF479356.1 glacial ice isolate str. G50-TS3 prokMSA_id:68769 AF479333.1 glacial ice isolate str. G500K-2 prokMSA_id:69776 AY138354.1 Bacillus anthracis str. 2000031244 prokMSA_id:69812 AY138305.1 Bacillus anthracis str. 2002017150 prokMSA_id:69819 AY138322.1 Bacillus anthracis str. 2000032761 prokMSA_id:69823 AY138358.1 Bacillus anthracis str. AMES prokMSA_id:69869 AY138309.1 Bacillus anthracis str. 2002017085 prokMSA_id:69870 AY138328.1 Bacillus anthracis str. 2002007458 prokMSA_id:69875 AY138293.1 Bacillus anthracis str. 2000032600 prokMSA_id:69902 AY138315.1 Bacillus anthracis str. 2002007642 prokMSA_id:69904 AY138382.1 Bacillus anthracis str. 2000031657 prokMSA_id:69928 AY138383.1 Bacillus anthracis str. 2000031664 prokMSA_id:69949 AY138292.1 Bacillus anthracis str. 2000032601 prokMSA_id:69963 AY138302.1 Bacillus anthracis str. 2002007711 prokMSA_id:70008 AY138270.1 Bacillus cereus str. H1439 prokMSA_id:70014 AY138335.1 Bacillus anthracis str. 2002008815 prokMSA_id:70084 AY138296.1 Bacillus anthracis str. 2000031648 prokMSA_id:70107 AY138272.1 Bacillus cereus str. 2000031486 prokMSA_id:70161 AY138273.1 Bacillus cereus str. G9667 prokMSA_id:70251 AY138374.1 Bacillus anthracis str. 2000031652 prokMSA_id:70252 AY138341.1 Bacillus anthracis str. 2002007648 prokMSA_id:70303 AY138320.1 Bacillus anthracis str. 2000032763 prokMSA_id:70317 AF290550.1 Bacillus cereus str. ATCC43881 prokMSA_id:70320 AY138369.1 Bacillus anthracis str. 2000031661 prokMSA_id:70515 AY138339.1 Bacillus anthracis str. 2002008803 prokMSA_id:70527 AY138284.1 Bacillus thuringiensis str. 2002017401 prokMSA_id:70554 AY138295.1 Bacillus anthracis str. 2000031649 prokMSA_id:70588 AY138360.1 Bacillus anthracis str. 2001039387 prokMSA_id:70620 AY138290.1 Bacillus thuringiensis str. 2000031482 prokMSA_id:70693 AY138352.1 Bacillus anthracis str. 2000031666 prokMSA_id:70696 AY138288.1 Bacillus thuringiensis str. 2000031494 prokMSA_id:70698 AY138301.1 Bacillus anthracis str. 2002007712 prokMSA_id:70757 AY138318.1 Bacillus anthracis str. 2002007619 prokMSA_id:70758 AY138350.1 Bacillus anthracis str. 2000031368 prokMSA_id:70771 AY138330.1 Bacillus anthracis str. 2002008802 prokMSA_id:70778 AF290549.1 Bacillus thuringiensis str. ATCC33679 prokMSA_id:70858 AY138303.1 Bacillus anthracis str. 2002017157 prokMSA_id:70886 AY138365.1 Bacillus anthracis str. 2000032642 prokMSA_id:70914 AY138377.1 Bacillus anthracis str. 2000031659 prokMSA_id:70973 AY138361.1 Bacillus anthracis str. 2001039360 prokMSA_id:71007 AY138334.1 Bacillus anthracis str. 2000032710 prokMSA_id:71141 AY138306.1 Bacillus anthracis str. 2002017149 prokMSA_id:71142 AY138368.1 Bacillus anthracis str. 2000031662 prokMSA_id:71161 AY138362.1 Bacillus anthracis str. 2001039361 prokMSA_id:71181 AY138331.1 Bacillus anthracis str. 2000032708 prokMSA_id:71325 AY138359.1 Bacillus anthracis str. 2001039382 prokMSA_id:71441 AY138380.1 Bacillus anthracis str. 2000031667 prokMSA_id:71443 AY138287.1 Bacillus thuringiensis str. 2000031496 prokMSA_id:71452 AY138323.1 Bacillus anthracis str. 2000032760 prokMSA_id:71460 AY138299.1 Bacillus anthracis str. 2000031668 prokMSA_id:71523 AY138314.1 Bacillus anthracis str. 2002019185 prokMSA_id:71582 AY138329.1 Bacillus anthracis str. 2002008812 prokMSA_id:71620 AY138349.1 Bacillus anthracis str. 2000031136 prokMSA_id:71730 AY138373.1 Bacillus anthracis str. 2000031653 prokMSA_id:71772 AY138336.1 Bacillus anthracis str. 2002008813 prokMSA_id:71839 AY138319.1 Bacillus anthracis str. 2000032764 prokMSA_id:71893 AY138346.1 Bacillus anthracis str. 2000031259 prokMSA_id:71914 AY138343.1 Bacillus anthracis str. 2002007549 prokMSA_id:71922 AY138321.1 Bacillus anthracis str. 2000032762 prokMSA_id:72016 AY138347.1 Bacillus anthracis str. 200003b1887B prokMSA_id:72035 AY138338.1 Bacillus anthracis str. 2000032706 prokMSA_id:72116 AY138366.1 Bacillus anthracis str. 2000031665 prokMSA_id:72121 AY138348.1 Bacillus anthracis str. 2000031887 prokMSA_id:72196 AY138285.1 Bacillus thuringiensis str. 2000031509 prokMSA_id:72243 AY138363.1 Bacillus anthracis str. 2002007574 prokMSA_id:72247 AY138327.1 Bacillus anthracis str. 2002007459 prokMSA_id:72254 AY138304.1 Bacillus anthracis str. 2002017153 prokMSA_id:72260 AY138310.1 Bacillus anthracis str. 2002017084 prokMSA_id:72365 AF290553.1 Bacillus anthracis prokMSA_id:72368 AY138367.1 Bacillus anthracis str. 2000031670 prokMSA_id:72393 AY138280.1 Bacillus thuringiensis str. 2000032757 prokMSA_id:72441 AY138379.1 Bacillus anthracis str. 2000031650 prokMSA_id:72470 AY138312.1 Bacillus anthracis str. 2002019002 prokMSA_id:72526 AY138357.1 Bacillus anthracis str. 2002007649 prokMSA_id:72615 AY138282.1 Bacillus thuringiensis str. 2000032755 prokMSA_id:72680 AY138289.1 Bacillus thuringiensis str. 2000031485 prokMSA_id:72712 AY138353.1 Bacillus anthracis str. 2000031076 prokMSA_id:72756 AY138337.1 Bacillus anthracis str. 2002008805 prokMSA_id:72810 AY138286.1 Bacillus thuringiensis str. 2000031508 prokMSA_id:72920 AY138317.1 Bacillus anthracis str. 2002007620 prokMSA_id:72972 AY138342.1 Bacillus anthracis str. 2002007488 prokMSA_id:73036 AY138345.1 Bacillus anthracis str. 2000031075 prokMSA_id:73059 AY138283.1 Bacillus thuringiensis str. 2002007400 prokMSA_id:73089 AY138313.1 Bacillus anthracis str. 2002019187 prokMSA_id:73102 AY138370.1 Bacillus anthracis str. 2000031671 prokMSA_id:73113 AY138308.1 Bacillus anthracis str. 2002019003 prokMSA_id:73214 AY138297.1 Bacillus anthracis str. 2000031658 prokMSA_id:73336 AY138311.1 Bacillus anthracis str. 2002017091 prokMSA_id:73337 AY138333.1 Bacillus anthracis str. 2000032711 prokMSA_id:73434 AY138375.1 Bacillus anthracis str. 2000031656 prokMSA_id:73444 AY138372.1 Bacillus anthracis str. 2000031651 prokMSA_id:73565 AY138281.1 Bacillus thuringiensis str. 2000032756 prokMSA_id:73585 AY138364.1 Bacillus anthracis str. 2002705969 prokMSA_id:73697 AY138351.1 Bacillus anthracis str. 2000031078 prokMSA_id:73705 AY138316.1 Bacillus anthracis str. 2002007621 prokMSA_id:73765 AY138340.1 Bacillus anthracis str. 2002007015 prokMSA_id:73784 AY138381.1 Bacillus anthracis str. 2000031663 prokMSA_id:73801 AY138298.1 Bacillus anthracis str. 2000031669 prokMSA_id:73889 AY138324.1 Bacillus anthracis str. 2002007582 prokMSA_id:73992 AY138371.1 Bacillus anthracis str. 2000031666 prokMSA_id:74004 AY138291.1 Bacillus anthracis str. 2001039370 prokMSA_id:74018 AY138378.1 Bacillus anthracis str. 2000031660 prokMSA_id:74030 AY138326.1 Bacillus anthracis str. 2002007460 prokMSA_id:74064 AF290552.1 Bacillus anthracis str. Sterne prokMSA_id:74110 AY138332.1 Bacillus anthracis str. 2000032707 prokMSA_id:74123 AY138294.1 Bacillus anthracis str. 2000031782 prokMSA_id:74146 AY138307.1 Bacillus anthracis str. 2002017090 prokMSA_id:74200 AY138356.1 Bacillus anthracis str. 2002007650 prokMSA_id:74273 AY138376.1 Bacillus anthracis str. 2000031655 prokMSA_id:74303 AY138355.1 Bacillus anthracis str. 2002007651 prokMSA_id:74309 AY138300.1 Bacillus anthracis str. 2000031654 prokMSA_id:74324 AY138344.1 Bacillus anthracis str. 2002007547 prokMSA_id:74425 AY138325.1 Bacillus anthracis str. 2002007581 prokMSA_id:75154 AJ318901.1 Bacillus mycoides str. MH48 earthworm gut prokMSA_id:77351 AY170457.1 Bacillus thuringiensis AQ21 prokMSA_id:77357 AY167823.1 Bacillus sp. str. SAFN-003 prokMSA_id:77415 AY167813.1 Bacillus megaterium str. SAFN-017 prokMSA_id:77709 AY159882.1 Bacillus sp. 98TH11323 prokMSA_id:78536 AJ534864.1 Bacillus sp. DW137 prokMSA_id:78682 AY176769.1 Bacillus cereus str. HJ20 prokMSA_id:78746 AJ536418.1 Bacillus cereus 1 prokMSA_id:78840 AY176767.1 Bacillus thuringiensis str. HJ15 prokMSA_id:79142 AJ539225.1 Bacillus cereus str. A78 prokMSA_id:79578 AJ539226.1 soil clone AY13 prokMSA_id:79609 AY189746.1 Bacillus sp. str. B-1 prokMSA_id:82523 AE017013.1 Bacillus cereus str. ATCC 14579 prokMSA_id:82718 NC_004722.1 Bacillus cereus ATCC 14579 prokMSA_id:83539 AY241451.1 Bacillus sp. str. UST020129-022 prokMSA_id:83594 AY275495.1 Bacillus sp. MSB2054 prokMSA_id:84080 AE016998.1 Bacillus cereus str. ATCC 14579 prokMSA_id:84334 AF500212.1 Bacillus sp. str. CJ11076 prokMSA_id:85155 AE017000.1 Bacillus cereus str. ATCC 14579 prokMSA_id:85177 AE017024.1 Bacillus anthracis str. Ames prokMSA_id:85366 NC_003997.3 Bacillus anthracis str. Ames prokMSA_id:86054 AY275494.1 Bacillus sp. MSB2029 prokMSA_id:86137 AE017025.1 Bacillus anthracis phage lambda Ba01 str. Ames str. prokMSA_id:86482 AE017026.1 Bacillus anthracis str. Ames prokMSA_id:86676 AE016999.1 Bacillus cereus str. ATCC 14579 prokMSA_id:86702 AE017039.1 Bacillus anthracis str. Ames prokMSA_id:88453 AJ577282.1 Bacillus cereus str. RIVM BC00067 prokMSA_id:88521 AY305275.1 Bacillus cereus str. J-1 prokMSA_id:88623 AJ577281.1 Bacillus cereus str. B 412 prokMSA_id:88674 AJ577286.1 Bacillus cereus str. OH 599 prokMSA_id:88986 AJ577289.1 Bacillus cereus str. B 102 prokMSA_id:89137 AJ577287.1 Bacillus cereus str. F 3371/93 prokMSA_id:89200 AJ577285.1 Bacillus cereus str. B 319 prokMSA_id:89224 AJ577275.1 Bacillus cereus str. B 308 prokMSA_id:89369 AJ577288.1 Bacillus cereus str. ATCC 4342 prokMSA_id:89749 AJ577277.1 Bacillus cereus str. B 203 prokMSA_id:89896 AJ577290.1 Bacillus cereus str. ATCC 10987 prokMSA_id:89913 AJ577274.1 Bacillus cereus str. NS 58 prokMSA_id:90071 AJ577278.1 Bacillus cereus str. LKT 1/1 prokMSA_id:90341 AJ577284.1 Bacillus cereus str. LKT 1/2 prokMSA_id:90400 AJ577283.1 Bacillus cereus str. RIVM BC00068 prokMSA_id:90438 AJ577292.1 Bacillus cereus str. B 204 prokMSA_id:90565 AJ577291.1 Bacillus cereus str. F 528/94 prokMSA_id:90579 AJ578036.1 Bacillus anthracis str. NC08234-02 prokMSA_id:90668 AJ577276.1 Bacillus cereus str. F 5881/94 prokMSA_id:91393 AY345553.1 Lake Wai'ele'ele water isolate str. H18 prokMSA_id:91655 AB116124.1 Bacillus anthracis str. S51 prokMSA_id:91694 AY345416.1 Lake Kauhako water isolate str. K2-46 prokMSA_id:91863 AY345491.1 Lake Waiau sediment clone W4B-B03 prokMSA_id:94646 AY373357.1 Bacillus mycoides str. c2 prokMSA_id:95498 AJ413201.1 Bacillus sp. str. LMG 20364 prokMSA_id:96762 AB114266.1 Bacillus sp. str. B913-2 prokMSA_id:98995 AY224388.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:99258 AY587783.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te28A prokMSA_id:99397 CP000001.1 Bacillus cereus str. ZK prokMSA_id:99417 AY587784.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te30A prokMSA_id:100305 AE017334.2 Bacillus anthracis 'Ames Ancestor' str. Ames Ancestor; A2084 prokMSA_id:100474 AE017264.1 Bacillus cereus str. ATCC 10987 prokMSA_id:100622 AE017265.1 Bacillus cereus str. ATCC 10987 prokMSA_id:100698 AY695834.1 Bacillus sp. str. SA-3 prokMSA_id:100767 AE017266.1 Bacillus cereus str. ATCC 10987 prokMSA_id:101037 AE017280.1 Bacillus cereus str. ATCC 10987 prokMSA_id:101470 AY425946.1 Bacillus cereus str. G9241 prokMSA_id:101676 AE017355.1 Bacillus thuringiensis serovar konkukian str. 97-27 prokMSA_id:101795 AB159768.1 Bacillus sp. str. A4-20-12 prokMSA_id:101953 AJ629413.1 Bacillus cereus prokMSA_id:102452 AY461751.1 Bacillus sp. str. H-10 prokMSA_id:102611 AY461752.1 Bacillus sp. str. H-11 prokMSA_id:102916 AY461754.1 Bacillus sp. str. H-13 prokMSA_id:103015 AY631056.1 Bacillus cereus str. ATCC BAA-1005 prokMSA_id:103058 AY461755.1 Bacillus sp. str. H-14 prokMSA_id:103130 AY224379.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:103206 AY461756.1 Bacillus sp. str. H-15 prokMSA_id:103220 AJ604543.1 za1 prokMSA_id:103499 AY461758.1 Bacillus sp. str. H-17 prokMSA_id:103536 AY756511.1 Bacillus sp. str. C332 prokMSA_id:103629 AY461759.1 Bacillus sp. str. H-18 prokMSA_id:104739 AY461791.1 Bacillus sp. str. FO-080 prokMSA_id:105341 AY641538.1 Streptomyces sp. LD48 prokMSA_id:105565 AB159770.1 Bacillus sp. str. ICSC-1 prokMSA_id:105572 AY587813.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te27R prokMSA_id:105594 AY395329.1 pasture soil clone EB1010 prokMSA_id:105682 AY748912.1 Bacillus sp. str. NIPHL090904/B1 prokMSA_id:105939 AY651924.1 Bacillus cereus str. Y1 prokMSA_id:105997 AY690707.1 Bacillus sp. str. HZ08 prokMSA_id:106052 AY741718.1 Bacillus thuringiensis str. SKJH-13 prokMSA_id:106741 AY461744.1 Bacillus sp. str. H-03 prokMSA_id:106887 AY689080.1 Bacillus sp. str. 12B_7 prokMSA_id:106895 AY461745.1 Bacillus sp. str. H-04 prokMSA_id:106915 AY224381.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:107058 AY461746.1 Bacillus sp. str. H-05 prokMSA_id:107071 AY224382.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:107207 AY461747.1 Bacillus sp. str. H-06 prokMSA_id:107220 AY224383.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:107295 AY461760.1 Bacillus thuringiensis serovar aizawai prokMSA_id:107356 AY461748.1 Bacillus sp. str. H-07 prokMSA_id:107366 AE017225.1 Bacillus anthracis str. Sterne prokMSA_id:107370 AY224384.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:107498 AY461749.1 Bacillus sp. str. H-08 prokMSA_id:107515 AY224385.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:107661 AY224386.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:107803 AY224387.1 Bacillus cereus str. BGSC 6A5 prokMSA_id:107874 NC_007530.2 Bacillus anthracis str. Ames 0581 prokMSA_id:108391 NC_005945.1 Bacillus anthracis str. Sterne prokMSA_id:108392 NC_003909.8 Bacillus cereus ATCC 10987 prokMSA_id:108699 AJ853737.1 Bacillus cereus SLF6 prokMSA_id:108739 NC_005957.1 Bacillus thuringiensis serovar konkukian str. 97-27 prokMSA_id:108984 AY795567.1 Bacillus thuringiensis str. NCTC4042b prokMSA_id:109407 AJ809498.1 Bacillus cereus str. TMW 2.383 prokMSA_id:109718 AY572476.1 Bacillus sp. R39S prokMSA_id:110200 AY572481.1 Bacillus sp. R32S prokMSA_id:110395 AY572484.1 Bacillus sp. R42S prokMSA_id:110718 AY572483.1 Bacillus sp. R37S prokMSA_id:110956 AY842872.1 Bacillus cereus str. CICC10185 prokMSA_id:111213 AJ868359.1 Bacillus sp. str. SMF5 2.21.2.1.2.1.3266 OTU 1 seq prokMSA_id:62984 AF526924.1 Mars Odyssey Orbiter and encapsulation facility clone T6-7 sp. 2.21.2.1.2.1.3269 OTU 1 seq prokMSA_id:14531 AJ005759.1 Geobacillus stearothermophilus str. NUB3621 2.21.2.1.2.1.3272 OTU 1 seq prokMSA_id:33595 AB034721.1 compost clone 4-75 2.21.2.1.2.1.3273 OTU 1 seq prokMSA_id:14757 AF058767.1 Bacillus subtilis str. A405 2.21.2.1.2.1.3277 OTU 1 seq prokMSA_id:47996 AY030333.1 Bacillus sp. str. KL-152 2.21.2.1.2.1.3283 OTU 40 seqs prokMSA_id:14627 AJ222833.1 5-28 prokMSA_id:16708 AF423300.1 soil clone 912-1 prokMSA_id:19733 AJ229228.1 anoxic bulk soil flooded rice microcosm clone BSV84 clone prokMSA_id:29974 AJ315066.1 Bacillus sp. LMG 19498 prokMSA_id:34978 AB021194.1 Bacillus niacini str. IFO15566 prokMSA_id:39569 AJ229221.1 anoxic bulk soil flooded rice microcosm clone BSV77 prokMSA_id:40603 AJ229215.1 anoxic bulk soil flooded rice microcosm clone BSV71 clone prokMSA_id:69987 AJ438295.1 Bacillus sp. str. R-10919 prokMSA_id:71081 AJ250056.1 Bacillus fumarioli str. LMG 17489 prokMSA_id:71713 AJ250059.1 Bacillus fumarioli str. LMG 18418 prokMSA_id:72371 AJ316313.1 Bacillus sp. str. LMG 20241 prokMSA_id:72486 AJ250057.1 Bacillus fumarioli str. LMG 17492 prokMSA_id:73777 AJ250058.1 Bacillus fumarioli str. LMG 18409 prokMSA_id:75807 AJ519636.1 uranium mill tailings soil sample clone Sh765B-TzT-30 sp. prokMSA_id:77044 AY150889.1 disturbed surface soil clone GR21 prokMSA_id:77359 AY167811.1 Bacillus niacini str. SAFN-019 prokMSA_id:77431 AY167809.1 Bacillus niacini str. SAFN-021 prokMSA_id:77490 AY167817.1 Bacillus niacini str. SAFN-011 prokMSA_id:81120 AJ542514.1 Bacillus soli str. LMG 21839 prokMSA_id:81371 AJ542511.1 Bacillus novalis str. LMG 21836 prokMSA_id:81794 AJ542509.1 Bacillus vireti str. LMG 21834 prokMSA_id:82044 AJ542510.1 Bacillus novalis str. LMG 21835 prokMSA_id:82239 AJ542513.1 Bacillus soli str. LMG 21838 prokMSA_id:82298 AJ542515.1 Bacillus soli str. LMG 21840 prokMSA_id:86709 AJ563505.1 Bacillus sp. IDA1908 prokMSA_id:86727 AJ563503.1 Bacillus sp. IDA1851 prokMSA_id:86802 AJ563506.1 Bacillus sp. IDA2156 prokMSA_id:86808 AJ563495.1 Bacillus sp. IDA1626 prokMSA_id:86839 AJ563510.1 Bacillus sp. IDA3293 prokMSA_id:87008 AJ563497.1 Bacillus sp. IDA2265 prokMSA_id:87027 AJ563512.1 Bacillus sp. IDA3493 prokMSA_id:87069 AJ563534.1 Bacillus sp. IDA2021 prokMSA_id:87340 AJ563502.1 Bacillus sp. IDA1928 prokMSA_id:87407 AJ563501.1 Bacillus sp. IDA1790 prokMSA_id:87465 AJ563504.1 Bacillus sp. IDA1692 prokMSA_id:87850 AJ563499.1 Bacillus sp. IDA2290 prokMSA_id:87857 AJ563500.1 Bacillus sp. IDA1746 prokMSA_id:88007 AJ563511.1 Bacillus sp. IDA3428 prokMSA_id:88009 AJ563509.1 Bacillus sp. IDA3120 prokMSA_id:105020 AY289498.1 Bacillus sp. IDA4740 2.21.2.1.2.1.3291 OTU 2 seqs prokMSA_id:14575 X64465.1 Bacillus methanolicus prokMSA_id:14578 S42879.1 Bacillus methanolicus 2.21.2.1.2.1.3295 OTU 1 seq prokMSA_id:22928 AF286486.1 Bacillus sp. str. VAN35 2.21.2.1.2.1.3300 OTU 1 seq prokMSA_id:14541 AB012934.1 Bacillus sp. str. MH-1 2.21.2.1.2.1.3304 OTU 2 seqs prokMSA_id:14990 AJ006086.1 Bacillus silvestris HR3-23 prokMSA_id:71479 AF385535.1 swab advanced noma lesion clone AW086 2.21.2.1.2.1.3306 OTU 2 seqs prokMSA_id:70975 AY145537.1 dilution (10e-5) marine section Weser estuary isolate str. GP-13 GP-13 prokMSA_id:73238 AY145538.1 dilution (10e-5) marine section Weser estuary isolate str. GP-14 GP-14 2.21.2.1.2.1.3321 OTU 2 seqs prokMSA_id:16416 X92163.1 Lake Natron isolate 103NT4 prokMSA_id:26833 X92164.1 Lake Elmenteita isolate WE1 2.21.2.1.2.1.3328 OTU 21 seqs prokMSA_id:14725 AF035430.1 Bacillus licheniformis str. Carlsberg strain NCIMB 6816 prokMSA_id:14726 AF035431.1 Bacillus licheniformis North Carolina isolate PWD-1 prokMSA_id:22295 AB020199.1 Bacillus sp. str. TGS850 prokMSA_id:23316 AF047176.1 Bacillus licheniformis str. TRC-18-2- prokMSA_id:28540 AJ224963.1 Pseudobacillus carolinae prokMSA_id:29493 AF333556.1 Bacillus sp. str. NW-Sp3AS prokMSA_id:32682 AF234855.1 Bacillus licheniformis str. FO-037 prokMSA_id:39451 AF234845.1 Bacillus licheniformis str. FO-022a prokMSA_id:39932 AF204163.1 Bacillus licheniformis str. ATCC 53757; PWD-1 prokMSA_id:44403 AF234841.1 Bacillus licheniformis str. FO-003 prokMSA_id:45947 AF333558.1 Bacillus sp. str. NW-Sp3Y prokMSA_id:51205 AF286479.1 Bacillus sp. str. VAN04 prokMSA_id:51297 AF204165.1 Bacillus licheniformis str. NCIMB 10689 prokMSA_id:74705 AF204164.1 Bacillus licheniformis str. ATCC 12759 prokMSA_id:91855 AY345521.1 Lake Waiau water clone W1A-D12 prokMSA_id:96121 AY380831.1 Bacillus licheniformis str. BCH290703B prokMSA_id:99464 AY553101.1 Bacillus sp. str. MO8 prokMSA_id:100248 AY553106.1 Bacillus sp. str. GSP63 prokMSA_id:100827 AY751776.1 Bacillus licheniformis str. F prokMSA_id:110234 AY839859.1 Bacillus licheniformis str. CICC10095 prokMSA_id:112699 AJ880762.1 Bacillus licheniformis SMF6 2.21.2.1.2.1.3331 OTU 1 seq prokMSA_id:14558 U40230.1 anaerobic thermophile IC-BH 2.21.2.1.2.1.3333 OTU 1 seq prokMSA_id:17599 AF202057.1 Sporosarcina ureae str. DSM 2281(T) 2.21.2.1.2.1.3334 OTU 1 seq prokMSA_id:15010 AJ000988.2 soil clone DA057 2.21.2.1.2.1.3337 OTU 11 seqs prokMSA_id:45468 AF441729.1 Bacillus sp. str. Kaza-34 prokMSA_id:46809 AJ316309.1 Bacillus sp. str. LMG 20238 prokMSA_id:52516 AJ297718.1 Bacillus sp. P53-2 prokMSA_id:68732 AF479370.1 glacial ice isolate str. SB100-8-1-1 prokMSA_id:71264 AY030324.1 Bacillus macroides str. KL-009 prokMSA_id:75028 AY172987.1 Bacillus sp. 'kanghwensis' str. kanghwensis 'kanghwensis' prokMSA_id:75224 AJ519635.1 uranium mill tailings soil sample clone Sh765B-TzT-27 sp. prokMSA_id:77384 AY167822.1 Bacillus macroides str. SAFN-005 prokMSA_id:99234 AY509230.1 Bacillus psychrosaccharolyticus str. S156 prokMSA_id:100175 AY608605.1 Bacillus litoralis str. SW-211 prokMSA_id:103927 AJ634598.1 crude oil clone A1 2.21.2.1.2.1.3339 OTU 1 seq prokMSA_id:28803 AB043854.1 Bacillus sp. str. N6 2.21.2.1.2.1.3343 OTU 1 seq prokMSA_id:14621 AF071857.1 Bacillus sp. JS2 2.21.2.1.2.1.3345 OTU 11 seqs prokMSA_id:17740 AF447806.1 Bacillus pumilus str. A586 prokMSA_id:18224 AF234856.1 Bacillus pumilus str. FO-038 prokMSA_id:49034 AF234851.1 Bacillus pumilus str. FO-033 prokMSA_id:60383 AF513456.1 Bacillaceae isolate str. LA10 prokMSA_id:82717 AJ550463.1 Bacillus pumilus prokMSA_id:83670 AY260860.1 Bacillus pumilus str. WN695 prokMSA_id:101580 AY548955.1 Bacillus pumilus str. S9 prokMSA_id:103233 AY599743.1 Bacillus sp. str. TB4-14-I prokMSA_id:105104 AY587810.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te23R prokMSA_id:105383 AY456263.1 Bacillus pumilus str. DSMZ27 prokMSA_id:106025 AY587816.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te34R 2.21.2.1.2.1.3347 OTU 1 seq prokMSA_id:31248 AF234858.1 Planococcus citreus str. FO-074a 2.21.2.1.2.1.3349 OTU 11 seqs prokMSA_id:14594 L27478.1 "Lactobacter thermoamylovorans" prokMSA_id:18183 AB020196.1 Bacillus sp. str. TGS537 prokMSA_id:33604 AY062014.1 Bacillus sp. G11 prokMSA_id:41225 AB034714.1 compost clone 4-50 prokMSA_id:44525 AB020197.1 Bacillus sp. str. TGS650 prokMSA_id:79671 Y13064.1 Bacillus circulans str. WSBC20060 prokMSA_id:79728 Y13065.1 Bacillus circulans str. WSBC20061 prokMSA_id:91159 AY294321.1 Bacillus circulans B prokMSA_id:91989 AY294319.1 Bacillus circulans B prokMSA_id:96928 Y14141.1 Bacillus thermoamylovorans ISR01 prokMSA_id:97746 AB121094.1 Bacillus thermoamylovorans str. BTa 2.21.2.1.2.1.3350 OTU 1 seq prokMSA_id:14569 U62623.1 Bacillus sp. str. ICPS10 2.21.2.1.2.1.3351 OTU 1 seq prokMSA_id:14624 Y14693.1 Bacillus benzoevorans str. YEO5 2.21.2.1.2.1.3355 OTU 1 seq prokMSA_id:14626 X77791.1 "Bacillus pseudomegaterium" 2.21.2.1.2.1.3356 OTU 1 seq prokMSA_id:15021 AF029364.1 Planococcus alkanoclasticus str. MAE2; NCIMB 13489 2.21.2.1.2.1.3359 OTU 1 seq prokMSA_id:15024 X62173.1 Planococcus kocurii 2.21.2.1.2.1.3362 OTU 1 seq prokMSA_id:83070 AJ550460.1 Bacillus horikoshii 2.21.2.1.2.1.3370 OTU 1 seq prokMSA_id:46318 AB020195.1 Bacillus sp. str. TGS437 2.21.2.1.2.1.3373 OTU 1 seq prokMSA_id:27737 AF267508.1 Bacillus sp. Isopa5 2.21.2.1.2.1.3375 OTU 1 seq prokMSA_id:30044 AF423230.1 soil clone 1448-1 2.21.2.1.2.1.3377 OTU 3 seqs prokMSA_id:47208 AF354665.1 Bacillus sp. UM14 str. um14 prokMSA_id:68753 AF479347.1 glacial ice isolate str. G200-N5 prokMSA_id:73402 AF227844.2 Bacillus sp. str. 76992 2.21.2.1.2.1.3378 OTU 1 seq prokMSA_id:31586 AB074700.1 Japan:Lake Biwa isolate str. D-Su(1)-25 2.21.2.1.2.1.3383 OTU 1 seq prokMSA_id:66784 AF500321.1 Bacillus sp. str. PE12 2.21.2.1.2.1.3385 OTU 1 seq prokMSA_id:77320 AY167806.1 Bacillus licheniformis str. SAFN-031 2.21.2.1.2.1.3388 OTU 1 seq prokMSA_id:14631 Y07605.2 Drentse grassland soil clone DA015 2.21.2.1.2.1.3391 OTU 5 seqs prokMSA_id:34699 AF252325.1 hot synthetic compost clone pPD14 prokMSA_id:35194 AF252317.1 hot synthetic compost clone pPD4 prokMSA_id:36181 AF252324.1 hot synthetic compost clone pPD13 prokMSA_id:45759 AF252323.1 hot synthetic compost clone pPD12 prokMSA_id:104680 AY466700.1 Anoxybacillus toebii str. NS1-1 2.21.2.1.2.1.3398 OTU 1 seq prokMSA_id:63742 AJ494730.1 Bacillus pumilus EI-26-7 2.21.2.1.2.1.3399 OTU 1 seq prokMSA_id:36300 X92166.1 Lake Natron isolate 105NT4 2.21.2.1.2.1.3401 OTU 1 seq prokMSA_id:81206 AY237408.1 Bacillus sp. str. HJ16 2.21.2.1.2.1.3403 OTU 1 seq prokMSA_id:14638 AJ236893.1 Bacillus sp. IDA624 2.21.2.1.2.1.3406 OTU 1 seq prokMSA_id:40011 AF332545.1 Bacillus thuringiensis B73 2.21.2.1.2.1.3411 OTU 1 seq prokMSA_id:16783 AB021182.1 Bacillus carboniphilus str. JCM9731 2.21.2.1.2.1.3414 OTU 1 seq prokMSA_id:74752 AJ295689.1 uranium mining waste pile isolate str. TzT-JG-1-2 2.21.2.1.2.1.3416 OTU 5 seqs prokMSA_id:16706 AF169534.1 Bacillus pycnus str. NRS-1694 prokMSA_id:22505 AF169533.1 Bacillus pycnus str. NRS-1693 prokMSA_id:35115 AF169519.1 Bacillus sp. str. BD-85 prokMSA_id:39697 AF169531.1 Bacillus pycnus str. NRS-1691 prokMSA_id:45761 AF169535.1 Bacillus pycnus str. NRS-1695 2.21.2.1.2.1.3417 OTU 1 seq prokMSA_id:34734 AF326360.1 Bacillus sp. str. MB-11 2.21.2.1.2.1.3419 OTU 2 seqs prokMSA_id:86553 AY228462.1 Bacillus algicola str. KMM 3737 prokMSA_id:100145 AB167010.1 Bacillus sp. str. NT N86 2.21.2.1.2.1.3424 OTU 1 seq prokMSA_id:76003 AJ532701.1 uranium mill tailings clone Gitt-KF-76 2.21.2.1.2.1.3426 OTU 1 seq prokMSA_id:72071 AJ276809.1 Bacillus sp. LMG 19415 str. LMG-19415 2.21.2.1.2.1.3427 OTU 1 seq prokMSA_id:14473 AB002644.1 G+C gram-positive HTA454 2.21.2.1.2.1.3429 OTU 1 seq prokMSA_id:40994 AB034713.1 compost clone 4-49 2.21.2.1.2.1.3430 OTU 1 seq prokMSA_id:84164 AY248716.1 Bacillus licheniformis str. A1 2.21.2.1.2.1.3438 OTU 1 seq prokMSA_id:39686 AF463535.1 Bacillus sp. str. HT-1 2.21.2.1.2.1.3439 OTU 63 seqs prokMSA_id:14628 AJ001222.1 grassland soil clone DA154 prokMSA_id:14637 AJ236890.1 Bacillus sp. IDA216 prokMSA_id:14640 AJ000983.2 soil clone DA134 prokMSA_id:14641 AJ000981.2 soil clone DA036 prokMSA_id:14644 AJ132749.1 Bacillus sp. IDA629 prokMSA_id:14656 AF071856.1 Bacillus siralis str. 171544 prokMSA_id:14680 X76437.1 Bacillus cohnii prokMSA_id:14682 AF140014.1 Bacillus cohnii str. ML-A10 prokMSA_id:14683 AB023412.1 Bacillus cohnii str. YN-2000 prokMSA_id:16306 X99966.2 soil clone prokMSA_id:21215 AF326366.1 Bacillus sp. str. PL-12 prokMSA_id:26501 AB055095.1 Bacillus sp. str. Y prokMSA_id:29621 AB043849.1 Bacillus sp. str. D6 prokMSA_id:29984 AB055096.1 Bacillus sp. str. SD521 prokMSA_id:31965 AB043861.1 Bacillus sp. str. 199 prokMSA_id:36408 AF423287.1 soil clone 716-1 prokMSA_id:39292 AF275705.1 cf. Bacillus sp. isolate str. F6 prokMSA_id:46286 X99967.2 soil clone prokMSA_id:52613 AB021195.1 Bacillus psychrosaccharolyticus str. ATCC23296 prokMSA_id:65500 AF501367.1 Bacillus macroides str. HAMBI2406 N1a1c prokMSA_id:65513 AF501351.1 Bacillus macroides str. HAMBI2395 27a1 prokMSA_id:68750 AF479351.1 glacial ice isolate str. G200-T19 prokMSA_id:69411 AF519463.1 Bacillus pichinotyi str. RS13; CIP 106 658 prokMSA_id:69694 AF519462.1 Bacillus casamancensis str. RS12; CIP 106 657 prokMSA_id:70528 AF228798.1 Bacillus sp. Domas Domas-82162a prokMSA_id:70683 AF519460.1 Bacillus pichinotyi str. RS1; CIP 106 662 prokMSA_id:70759 AJ315061.1 Bacillus sp. LMG 19493 prokMSA_id:71049 AF414443.1 Bacillus sp. str. YY prokMSA_id:71589 AF519464.1 Bacillus pichinotyi str. RS2; CIP 106 663 prokMSA_id:73206 AJ315063.1 Bacillus sp. LMG 19495 prokMSA_id:73528 AF501337.1 Bacillus macroides str. HAMBI2375 AN4a prokMSA_id:76322 AJ519638.1 uranium mill tailings soil sample clone Sh765B-TzT-70 sp. prokMSA_id:77312 AY167802.1 Bacillus benzoevorans str. SAFN-025 prokMSA_id:77545 AY167808.1 Bacillus benzoevorans str. SAFN-024 prokMSA_id:88158 AJ544784.1 Bacillus sp. IDA3504 prokMSA_id:89731 AJ544783.1 Bacillus sp. IDA1527 prokMSA_id:91002 AY345455.1 Lake Kauhako water isolate str. K93 prokMSA_id:91142 AY345482.1 Lake Kauhako water isolate str. K2-83 prokMSA_id:91782 AY345487.1 Lake Kauhako water isolate str. K2-77 prokMSA_id:91798 AY345475.1 Lake Kauhako water isolate str. K34 prokMSA_id:91938 AY345357.1 Loihi submarine volcano isolate str. R5B prokMSA_id:96553 AY382610.1 soil clone S441 prokMSA_id:99331 AY660697.1 Bacillus sp. cryopeg_9b 9b prokMSA_id:99482 AY660698.1 Bacillus sp. cryopeg_4c 4c prokMSA_id:99947 AY289500.1 Bacillus sp. IDA4921 prokMSA_id:100100 AY635875.1 Bacillus sp. str. BM-11_1 prokMSA_id:100244 AY559424.1 hot spring water clone LS20 prokMSA_id:100263 AB111938.1 Bacillus halmapalus str. A64 prokMSA_id:100338 AY514023.1 Bacillus sp. str. KJ2C12 prokMSA_id:100403 AY559425.1 hot spring water clone LS27 prokMSA_id:100562 AY559426.1 hot spring water clone LS8 prokMSA_id:101827 AJ627210.1 Bacillus humi str. LMG 22167 prokMSA_id:102129 AY704918.1 Bacillus sp. TW2-HongKong str. TW2 prokMSA_id:102680 AY647284.1 Bacillus bataviensis str. MSU1210 prokMSA_id:102729 AB178889.1 Bacillus sp. str. MM1 prokMSA_id:104572 AY289495.1 Bacillus sp. IDA4715 prokMSA_id:104622 AY559417.1 hot spring water clone LW3 prokMSA_id:104721 AY289496.1 Bacillus sp. IDA4919 prokMSA_id:106239 AF128875.1 Bacillus sp. str. B90 prokMSA_id:106573 AY221057.1 sediments collected at Charon's Cascade near Echo River October 2000 clone CCM22a prokMSA_id:106701 AY724690.1 Bacillus circulans str. ATCC 4513; NCTC 2610; NCDO1775 prokMSA_id:107041 AJ627209.1 Bacillus humi str. LMG 22168 prokMSA_id:112957 AB189702.1 alkaline-enriched termite gut homogenate clone Mc-9.2e-26 2.21.2.1.2.1.3440 OTU 1 seq prokMSA_id:16919 AY032601.1 Bacillus macyae str. JMM-4 2.21.2.1.2.1.3441 OTU 1 seq prokMSA_id:48390 AF286481.1 Bacillus sp. str. VAN13 2.21.2.1.2.1.3443 OTU 1 seq prokMSA_id:23244 AB043852.1 Bacillus sp. str. N-4 2.21.2.1.2.1.3448 OTU 1 seq prokMSA_id:27759 AJ011422.1 B4 2.21.2.1.2.1.3454 OTU 1 seq prokMSA_id:14659 X60611.1 Bacillus benzeovorans 2.21.2.1.2.1.3455 OTU 4 seqs prokMSA_id:17754 AJ297716.1 Bacillus sp. P53-6 prokMSA_id:85408 AY266991.1 Bacillus sp. str. 433-D9 prokMSA_id:101984 AJ627211.1 Bacillus arvi str. LMG 22165 prokMSA_id:102138 AJ627212.1 Bacillus arenosi str. LMG 22166 2.21.2.1.2.1.3460 OTU 19 seqs prokMSA_id:14534 AB028234.1 Geobacillus thermodenitrificans str. OHT-1 prokMSA_id:14535 M77487.1 "Bacillus thermodenitrificans" prokMSA_id:14536 AF114424.1 Geobacillus thermodenitrificans str. NS prokMSA_id:14538 AF114426.1 Geobacillus thermodenitrificans str. T4 prokMSA_id:14539 AJ005760.1 Geobacillus stearothermophilus str. K1041 prokMSA_id:23251 AF276305.1 Geobacillus uzenensis str. X prokMSA_id:26066 AF276307.1 Geobacillus subterraneus str. K prokMSA_id:45180 AF411064.1 Geobacillus anatolicus str. SB prokMSA_id:46206 AF276306.1 Geobacillus subterraneus str. 34 (T) prokMSA_id:67723 AB063312.1 Bacillus sp. str. TS-3 prokMSA_id:73417 AF276304.1 Geobacillus uzenensis str. U (T) prokMSA_id:74097 AY079151.1 Geobacillus uralicus str. K2 prokMSA_id:88427 AY312404.1 Geobacillus jurassicus str. DS1 prokMSA_id:98918 AY608958.1 Geobacillus subterraneus str. BGSC 91A3 prokMSA_id:99070 AY608959.1 Geobacillus uzenensis str. BGSC 92A2 prokMSA_id:99643 AY608975.1 Geobacillus kaue str. BGSC W9A78 prokMSA_id:107541 AY592781.1 deep-sea mud volcano clone BC07-4B-66 prokMSA_id:107578 AY608956.1 Geobacillus subterraneus str. BGSC 91A1 prokMSA_id:107726 AY608957.1 Geobacillus subterraneus str. BGSC 91A2 2.21.2.1.2.1.3465 OTU 1 seq prokMSA_id:14404 AF006076.1 Bacillus edaphicus str. T7 2.21.2.1.2.1.3467 OTU 1 seq prokMSA_id:70144 AJ419629.1 Bacillus luciferensis str. LMG 18422 2.21.2.1.2.1.3468 OTU 1 seq prokMSA_id:14405 AF006077.1 Bacillus mucilaginosus str. 1480D 2.21.2.1.2.1.3469 OTU 3 seqs prokMSA_id:14591 X82492.1 Bacillus oleronius prokMSA_id:14592 X81130.1 Bacillus sp. prokMSA_id:48382 AF393508.1 Bacillus oleronius str. LMG 17886; MB397 2.21.2.1.2.1.3472 OTU 1 seq prokMSA_id:23879 AF348730.1 G+C Gram-positive isolate str. MPD-63 2.21.2.1.2.1.3473 OTU 1 seq prokMSA_id:14593 Y07577.1 Drentse grassland soil clone DA136 2.21.2.1.2.1.3474 OTU 1 seq prokMSA_id:14667 AF013547.2 volcanic cinder field Sunset Crater Arizona clone 2.21.2.1.2.1.3477 OTU 29 seqs prokMSA_id:14649 D88778.1 Bacillus sp. subsp. Sporosarcina str. DSK25 prokMSA_id:14654 AF154081.1 hydrocarbon seep clone BPC060 prokMSA_id:14655 AF154082.1 hydrocarbon seep clone BPC094 prokMSA_id:14673 D16273.1 Bacillus megaterium prokMSA_id:14678 D78478.1 Bacillus simplex prokMSA_id:22216 AB062696.1 Bacillus aestuarii prokMSA_id:23952 AF423258.1 soil clone 408-1 prokMSA_id:24734 AF199464.1 Bacillus subtilis str. MK007 prokMSA_id:28627 AF281158.1 Jeotgalibacillus alimentarius str. YKJ-13 prokMSA_id:29253 AB020193.1 Bacillus sp. str. TGS237 prokMSA_id:29536 AF217809.1 Bacillus sp. KYJ963 str. KYJ 963 prokMSA_id:31967 AF427153.1 Bacillus sp. PAR4 prokMSA_id:32365 AY030329.1 Bacillus mojavensis str. KL-070 prokMSA_id:38188 AY048851.1 Bacillus sp. str. CMB26 prokMSA_id:38716 AF346494.1 Bacillus sp. str. BAC1 prokMSA_id:47700 AF323260.1 bioreactor processing inorganic sulfide and mercaptans isolate str. B4P-1B B4P-1B prokMSA_id:48235 AF323264.1 bioreactor processing inorganic sulfide and mercaptans isolate str. W6G-1 W6G-1 prokMSA_id:52825 AB021185.1 Bacillus flexus str. IFO15715 prokMSA_id:56000 AF513963.1 Bacillaceae clone PH-B53N prokMSA_id:56298 AF530155.1 Marinibacillus marinus str. MGP-4AN prokMSA_id:69993 AF326369.1 Bacillus sp. str. PL-26 prokMSA_id:70648 AF423213.1 soil clone 1175-1 prokMSA_id:74232 AF326371.1 Bacillus sp. str. PL-7 prokMSA_id:77601 AB098575.1 Bacillus badius str. TUT1006 prokMSA_id:78046 AJ491841.1 Bacillus megaterium str. C1 prokMSA_id:79732 AY190535.1 Marinibacillus campisalis str. SF-57 prokMSA_id:82893 AJ550461.1 Bacillus flexus prokMSA_id:83730 AJ550462.1 Bacillus megaterium prokMSA_id:83777 AY219900.1 Bacillus subtilis 2.21.2.1.2.1.3482 OTU 2 seqs prokMSA_id:60381 AF513458.1 Bacillaceae isolate str. LA38BB prokMSA_id:102229 AB116126.1 garbage compost isolate str. M32 2.21.2.1.2.1.3483 OTU 3 seqs prokMSA_id:77233 AJ535638.1 Bacillus galactosidilyticus str. LMG 17892 prokMSA_id:77436 AY167810.1 Bacillus sp. str. SAFN-020 prokMSA_id:77568 AY167801.1 Bacillus sp. str. SAFN-028 2.21.2.1.2.1.3484 OTU 1 seq prokMSA_id:46652 X92165.1 Little Lake Magadi isolate 95LM4 2.21.2.1.2.1.3489 OTU 6 seqs prokMSA_id:55578 AF548880.1 Bacillus sp. str. CPB 9 prokMSA_id:77308 AY167818.1 Bacillus silvestris str. SAFN-010 prokMSA_id:77326 AY167819.1 Sporosarcina aquimarina str. SAFN-008 prokMSA_id:79018 AY161043.1 Brevibacillus sp. str. PLC-3 prokMSA_id:93730 AB084263.1 Bacillus sp. str. KSM-9865 prokMSA_id:105387 AY690703.1 Bacillus sp. str. HZ02 2.21.2.1.2.1.3491 OTU 2 seqs prokMSA_id:34421 AF326370.1 Bacillus sp. str. PL-30 prokMSA_id:74659 AF326361.1 Bacillus sp. str. MB-12 2.21.2.1.2.1.3492 OTU 18 seqs prokMSA_id:14756 AF074970.1 Bacillus subtilis subsp. spizizenii str. NRRL B-23049 subsp. prokMSA_id:14758 AF142577.1 Bacillus subtilis str. PY79 prokMSA_id:14759 AB018484.1 Bacillus subtilis str. OG-01-center prokMSA_id:14760 AB018486.1 Bacillus subtilis str. ATCC 6633 prokMSA_id:14761 AB016721.1 Bacillus subtilis str. BS62 prokMSA_id:17774 AF318900.1 Bacillus subtilis str. N10; BGSC 3A17 prokMSA_id:38003 AY030331.1 Bacillus subtilis str. KL-077 prokMSA_id:52508 AF391127.1 Bacillus licheniformis str. KL-164 prokMSA_id:63981 AY114158.1 Bacillus subtilis str. GL prokMSA_id:73711 AB065370.1 Bacillus subtilis prokMSA_id:74972 AY162133.1 Bacillus subtilis str. BZ15 prokMSA_id:76151 AY162131.1 Bacillus subtilis str. BHP6-1 prokMSA_id:76500 AY162126.1 Bacillus subtilis str. GA1-5 prokMSA_id:76539 AY162130.1 Bacillus subtilis str. STB29 prokMSA_id:76813 AY162129.1 Bacillus subtilis str. WP1-21 prokMSA_id:76920 AY162127.1 Bacillus subtilis str. HAZ2 prokMSA_id:83961 AB042061.1 Bacillus subtilis str. IAM 12118T prokMSA_id:84840 AY260858.1 Bacillus subtilis str. WN696 2.21.2.1.2.1.3495 OTU 1 seq prokMSA_id:17518 AF252320.1 hot synthetic compost clone pPD7 2.21.2.1.2.1.3500 OTU 7 seqs prokMSA_id:14668 AF157696.1 Bacillus macroides str. dhr2 prokMSA_id:26376 AJ316308.1 Bacillus sp. str. LMG 21002 prokMSA_id:33158 AJ315057.1 Bacillus sp. LMG 19489 prokMSA_id:68730 AF479374.1 glacial ice isolate str. SB150-2A2 prokMSA_id:72962 AJ315059.1 Bacillus sp. LMG 19491 prokMSA_id:73022 AJ315062.1 Bacillus sp. LMG 19494 prokMSA_id:82125 AY237407.1 Bacillus sp. str. HJ8 2.21.2.1.2.1.3503 OTU 1 seq prokMSA_id:16669 AF199461.1 Bacillus sp. str. YUA25 2.21.2.1.2.1.3506 OTU 1 seq prokMSA_id:44577 X92159.1 Lake Nakuru isolate 18N1 2.21.2.1.2.1.3509 OTU 1 seq prokMSA_id:50925 AY043085.1 Bacillus benzoevorans 2.21.2.1.2.1.3511 OTU 2 seqs prokMSA_id:16790 AF275701.1 cf. Bacillus sp. isolate str. F23 prokMSA_id:29235 AB044748.1 Bacillus sp. KSM-K38 2.21.2.1.2.1.3514 OTU 1 seq prokMSA_id:66290 AF506059.1 Sporosarcina sp. LCSAOTU9 2.21.2.1.2.1.3515 OTU 14 seqs prokMSA_id:14530 AF067651.1 Geobacillus caldoxylosilyticus str. S1812; DSM 97-987; ATCC 700356 prokMSA_id:27372 AJ429137.1 Bacillus sp. str. S1b-3 prokMSA_id:69206 AJ489326.1 Geobacillus caldoxylosilyticus B70 prokMSA_id:71319 AJ271738.1 Bacillus thermoterrestris str. TS2A prokMSA_id:74137 AJ271739.1 Bacillus thermoterrestris str. TS24A prokMSA_id:86077 AY248718.1 Geobacillus caldoxylosilyticus str. TK4 prokMSA_id:86870 AJ564610.1 Geobacillus caldoxylosilyticus F17 prokMSA_id:87339 AJ564618.1 Geobacillus caldoxylosilyticus Tj prokMSA_id:96582 AY397769.1 Geobacillus sp. str. R-7653 prokMSA_id:103052 AY608949.1 Geobacillus caldoxylosilyticus str. BGSC W98A1 prokMSA_id:106689 AY608950.1 Geobacillus caldoxylosilyticus str. BGSC W98A2 prokMSA_id:106843 AY608951.1 Geobacillus caldoxylosilyticus str. BGSC W9A36 prokMSA_id:106990 AY608952.1 Bacillus sp. str. BGSC W9A59 prokMSA_id:107289 AY608954.1 Bacillus sp. str. BGSC W9A68 2.21.2.1.2.1.3517 OTU 25 seqs prokMSA_id:15017 D55729.1 Planococcus okeanokoites prokMSA_id:15019 AF041791.1 Planomicrobium mcmeekinii str. S23F2 prokMSA_id:15025 X62172.1 Planococcus citreus prokMSA_id:16646 AJ314744.1 Planococcus antarcticus str. CMS 3or prokMSA_id:29551 AJ314745.1 Planococcus antarcticus str. CMS 26or prokMSA_id:33254 AF242541.1 Planococcus sp. 'SOS Orange' str. SOS Orange 'SOS prokMSA_id:37775 AJ314747.1 Planococcus antarcticus str. CMS 84or prokMSA_id:45093 AJ314746.1 Planococcus psychrophilus str. CMS 53or () prokMSA_id:52488 AF144750.1 Planomicrobium koreense str. JG07 prokMSA_id:63194 AJ496039.1 Planococcus sp. p16X prokMSA_id:66682 AF500008.1 Planococcus citreus str. TF-16 prokMSA_id:66683 AF500007.1 Planococcus maritimus str. TF-9 prokMSA_id:73281 AF237975.1 Planococcus citreus str. MS20 prokMSA_id:74784 AF324659.1 Planococcus psychrotoleratus str. JCM 11080 prokMSA_id:77011 AJ519633.1 uranium mill tailings soil sample clone Sh765B-AG-2 sp. prokMSA_id:82798 AJ440990.1 lake microbial mat isolate str. R-8161 prokMSA_id:91001 AJ493659.2 Planococcus rifietoensis str. M8 prokMSA_id:99550 AJ781718.1 Planococcus sp. str. 1-15 prokMSA_id:102308 AY730709.1 Planomicrobium okeanokoites str. 120804KB1 prokMSA_id:103548 AY538695.1 Planococcus sp. str. Smarlab 3302355 prokMSA_id:103612 AY582938.1 Planococcus sp. str. D36 prokMSA_id:103823 AJ697862.1 Planomicrobium novatatis str. 3-12 prokMSA_id:104221 AY428552.1 Planococcus maritimus str. KMM 3738 prokMSA_id:108618 AY745836.1 Planococcus sp. str. NPO-JL-69 prokMSA_id:108687 AY771711.1 Planococcus psychrotoleratus str. S2-46 2.21.2.1.2.1.3527 OTU 1 seq prokMSA_id:14988 L38654.1 Bacillus sphaericus 2.21.2.1.2.1.3529 OTU 1 seq prokMSA_id:47004 AF202056.1 Sporosarcina aquimarina str. SW28(T) 2.21.2.1.2.1.3531 OTU 1 seq prokMSA_id:14497 AF064705.1 Bacillus arseniciselenatis str. E1H 2.21.2.1.2.1.3532 OTU 1 seq prokMSA_id:14499 X76444.1 Bacillus species 2.21.2.1.2.1.3540 OTU 21 seqs prokMSA_id:14544 AB034902.1 Geobacillus thermoleovorans str. H41 prokMSA_id:14545 AB034836.1 Geobacillus thermoleovorans str. B23 prokMSA_id:14550 AB002647.1 G+C gram-positive HTA1418 prokMSA_id:18188 AF228765.1 Bacillus sp. Cimanggu prokMSA_id:25595 AB021196.1 Geobacillus stearothermophilus str. IFO12550 prokMSA_id:34397 AF465646.1 Bacillus sp. str. YNPRH2P-2 prokMSA_id:39078 AB051200.1 Bacillus sp. str. S prokMSA_id:40665 AF228764.1 Bacillus sp. Papandayan prokMSA_id:55616 AB089237.1 Bacillus sp. str. A3 prokMSA_id:56299 AB089208.1 Bacillus sp. str. B2 prokMSA_id:58655 AB089240.1 Bacillus sp. str. D1 prokMSA_id:58659 AB089236.1 Bacillus sp. str. V0 prokMSA_id:58669 AB089224.1 Bacillus sp. str. G62 prokMSA_id:58677 AB089215.1 Bacillus sp. str. E2 prokMSA_id:58679 AB089212.1 Bacillus sp. str. B6 prokMSA_id:58680 AB089213.1 Bacillus sp. str. B7 prokMSA_id:58681 AB089211.1 Bacillus sp. str. B5 prokMSA_id:58682 AB089210.1 Bacillus sp. str. B4 prokMSA_id:58685 AB089207.1 Bacillus sp. str. B1 prokMSA_id:58687 AB089209.1 Bacillus sp. str. B3 prokMSA_id:73016 AF385083.1 Geobacillus thermoleovorans str. YN 2.21.2.1.2.1.3542 OTU 4 seqs prokMSA_id:15018 AB017538.1 Renibacterium salmoninarum prokMSA_id:22739 AJ277984.1 Bacillus psychrodurans str. DSM 11713 68E3 prokMSA_id:23863 AJ277983.1 Bacillus psychrotolerans str. DSM 11706 3H1 prokMSA_id:36118 AF308876.1 Arsenic resistant soil isolate str. 7-04 2.21.2.1.2.1.3546 OTU 1 seq prokMSA_id:41058 AF332544.1 Bacillus megaterium B70 2.21.2.1.2.1.3550 OTU 36 seqs prokMSA_id:17758 AB066344.1 Bacillus sp. str. No.51 prokMSA_id:20365 AB066347.1 Bacillus sp. str. No.49 prokMSA_id:22479 AY030338.1 Bacillus megaterium str. KL-197 prokMSA_id:23021 AB066338.1 Bacillus sp. str. No.61 prokMSA_id:28208 AJ315065.1 Bacillus sp. LMG 19497 prokMSA_id:33074 AY030336.1 Bacillus megaterium str. KL-181 prokMSA_id:36437 AB066339.1 Bacillus sp. str. No.44 prokMSA_id:36736 AB066345.1 Bacillus sp. str. No.54 prokMSA_id:60442 AY131222.1 Bacillus sp. str. Fa29 prokMSA_id:68766 AF479335.1 glacial ice isolate str. G500K-18 prokMSA_id:74302 AJ316310.1 Bacillus sp. str. LMG 20240 prokMSA_id:77310 AY167862.1 Bacillus megaterium str. SAFR-038 prokMSA_id:77319 AY167861.1 Bacillus megaterium str. SAFR-040 prokMSA_id:77353 AY167803.1 Bacillus megaterium str. SAFN-040 prokMSA_id:77354 AY167824.1 Bacillus megaterium str. SAFN-002 prokMSA_id:77554 AY167865.1 Bacillus megaterium str. SAFR-011 prokMSA_id:81504 NC_004604.1 Bacillus megaterium str. QM B1551 prokMSA_id:81816 AF142677.4 Bacillus megaterium str. QM B1551 prokMSA_id:100427 AY289503.1 Bacillus sp. IDA4770 prokMSA_id:103905 AJ748259.1 Bacillus sp. str. R-16769 prokMSA_id:103926 AY621379.1 Bacillus sp. str. NJ6-3-2 prokMSA_id:104234 AY654897.1 Bacillus sp. str. NK13 prokMSA_id:104398 AY505510.1 Bacillus megaterium str. GSP10 prokMSA_id:104548 AY505511.1 Bacillus megaterium str. GSP55 prokMSA_id:105010 AY553114.1 Bacillus megaterium str. MO26 prokMSA_id:105076 AY690689.1 Bacillus sp. str. MT21 prokMSA_id:105321 AY553116.1 Bacillus megaterium str. MO29 prokMSA_id:105474 AY553117.1 Bacillus megaterium str. MO30 prokMSA_id:105620 AY553118.1 Bacillus megaterium str. MO31 prokMSA_id:106742 AJ784847.1 Bacillus sp. S/2 prokMSA_id:107305 AY739901.1 Bacillus megaterium str. ALA2; NRRL B-21660 prokMSA_id:108232 AY785743.1 Bacillus sp. OUCZ63 prokMSA_id:109576 AY864632.1 Bacillus sp. str. EC2 prokMSA_id:109642 AY572486.1 Bacillus sp. R43S prokMSA_id:110614 AJ717381.1 Bacillus megaterium AC46b1 prokMSA_id:113906 AY939830.1 Bacillus sp. str. R3 2.21.2.1.2.1.3555 OTU 5 seqs prokMSA_id:14666 X70312.1 "Bacillus macroides" prokMSA_id:25387 AY030319.1 Bacillus macroides str. JPL-4 prokMSA_id:31293 AF423217.1 soil clone 1296-1 prokMSA_id:68488 AJ439078.1 Bacillus simplex str. DSM 1321T prokMSA_id:68767 AF479334.1 glacial ice isolate str. G500K-17 2.21.2.1.2.1.3562 OTU 1 seq prokMSA_id:55982 AF479330.1 glacial ice isolate str. G500K-19 2.21.2.1.2.1.3571 OTU 2 seqs prokMSA_id:14557 AF113512.1 Bacillus sp. str. TA2.A1 prokMSA_id:33289 AB043863.1 Bacillus sp. str. TX3 2.21.2.1.2.1.3579 OTU 1 seq prokMSA_id:33993 AB020198.1 Bacillus sp. str. TGS750 2.21.2.1.2.1.3581 OTU 1 seq prokMSA_id:17956 AB020192.1 Bacillus sp. str. TGS137 2.21.2.1.2.1.3583 OTU 43 seqs prokMSA_id:14984 D16280.1 Bacillus sphaericus prokMSA_id:14985 M77486.1 Bacillus fusiformis prokMSA_id:18543 AF169526.1 Bacillus sp. str. NRS-111 prokMSA_id:20955 AF169507.1 Bacillus sp. str. B-4297 prokMSA_id:21252 AF169532.1 Bacillus sp. str. NRS-1692 prokMSA_id:21894 AF169493.1 Bacillus sp. str. B-183 prokMSA_id:22582 AJ310084.1 Bacillus sphaericus str. DSM 28 prokMSA_id:22934 AF169541.1 Bacillus sp. str. NRS-719 prokMSA_id:23206 AF169544.1 Bacillus sp. str. NRS-800 prokMSA_id:23764 AF169521.1 Bacillus sp. str. BD-89 prokMSA_id:25415 AF169496.1 Bacillus sp. str. B-23269 prokMSA_id:26107 AF169545.1 Bacillus sp. str. NRS-810 prokMSA_id:29002 AF169517.1 Bacillus sp. str. BD-121 prokMSA_id:30216 AF169492.1 Bacillus sp. str. B-14957 prokMSA_id:31069 AF169495.1 Bacillus sphaericus str. B-23268 prokMSA_id:31358 AF169491.1 Bacillus sp. str. B-14905 prokMSA_id:33671 AF169514.1 Bacillus sp. str. BD-115 prokMSA_id:33727 AF169547.1 Bacillus sp. str. NRS-967 prokMSA_id:36977 AF169539.1 Bacillus sp. str. NRS-593 prokMSA_id:38572 AF169515.1 Bacillus sp. str. BD-117 prokMSA_id:39763 AF169543.1 Bacillus sp. str. NRS-752 prokMSA_id:39794 AF169511.1 Bacillus sp. str. BD-109 prokMSA_id:41978 AF169524.1 Bacillus sp. str. BD-95 prokMSA_id:42176 AF169523.1 Bacillus sp. str. BD-94 prokMSA_id:44025 AF427154.1 Bacillus sp. PAR5 prokMSA_id:44036 AY043358.1 Bacillus sp. str. ZYM prokMSA_id:47340 AF169505.1 Bacillus sp. str. B-23287 prokMSA_id:48387 AF169516.1 Bacillus sp. str. BD-119 prokMSA_id:50391 AF169498.1 Bacillus sp. str. B-23280 prokMSA_id:52279 AF169522.1 Bacillus sp. str. BD-93 prokMSA_id:62950 AF526913.2 Bacillus odysseyi str. 34hs1 prokMSA_id:67860 AY082370.1 hot spring clone DGG30 prokMSA_id:70175 AF385530.1 swab advanced noma lesion clone AV085 prokMSA_id:71751 AF227842.1 Bacillus sphaericus str. 63599 prokMSA_id:72583 AJ311894.1 Bacillus sphaericus str. DSM 396 NTCC 9602 prokMSA_id:74854 AF169518.1 Bacillus sp. str. BD-83 prokMSA_id:78227 AB098577.1 Bacillus sp. str. TUT1008 prokMSA_id:85427 AB106346.1 Bacillus sp. str. FRA000042 prokMSA_id:101757 AY548956.1 Bacillus fusiformis str. S10 prokMSA_id:103070 AJ604542.1 Collembola-associated clone za06 prokMSA_id:103509 AJ604545.1 Collembola-associated clone za16 prokMSA_id:106792 AY689067.1 Bacillus sp. str. 9C_9 prokMSA_id:106939 AY689068.1 Bacillus sp. str. 9C_10 2.21.2.1.2.1.3589 OTU 8 seqs prokMSA_id:33764 AJ229178.1 anoxic bulk soil flooded rice microcosm clone BSV04 clone prokMSA_id:69114 AF519466.1 Bacillus senegalensis str. RS6; CIP 106 667 prokMSA_id:69468 AF519469.1 Bacillus arbutinivorans str. RS9; CIP 106 659 prokMSA_id:69657 AF519467.1 Bacillus djibelorensis str. RS7; CIP 106 668 prokMSA_id:72679 AF519468.1 Bacillus senegalensis str. RS8; CIP 106 669 prokMSA_id:81391 AJ542505.1 Bacillus drentensis str. LMG 21830 prokMSA_id:81770 AJ542508.1 Bacillus bataviensis str. LMG 21833 prokMSA_id:81960 AJ542507.1 Bacillus bataviensis str. LMG 21832 2.21.2.1.2.1.3594 OTU 1 seq prokMSA_id:81178 AJ544622.1 Planococcus maitriensis str. S1 2.21.2.1.2.1.3606 OTU 1 seq prokMSA_id:32808 AF447805.1 Bacillus subtilis str. A202 2.21.2.1.2.1.3609 OTU 1 seq prokMSA_id:14620 X77790.1 Bacillus badius 2.21.2.1.2.1.3610 OTU 3 seqs prokMSA_id:32275 AB066346.1 Bacillus sp. str. TH64 prokMSA_id:40353 AB066337.1 Bacillus sp. str. TP81 prokMSA_id:71600 AB066336.1 Bacillus sp. str. TP50 2.21.2.1.2.1.3612 OTU 1 seq prokMSA_id:83619 AB042060.1 Bacillus schlegelii str. ATCC 43741T 2.21.2.1.2.1.3614 OTU 5 seqs prokMSA_id:14689 X86064.1 Exiguobacterium sp.7-3 prokMSA_id:32124 AJ297437.1 Exiguobacterium antarcticum str. C/C-aer/b prokMSA_id:72912 AJ344151.1 Exiguobacterium undae str. L2 prokMSA_id:99728 AY259521.1 Exiguobacterium sp. FB165 prokMSA_id:110009 AY864633.1 Exiguobacterium sp. str. DVS3y 2.21.2.1.2.1.3617 OTU 1 seq prokMSA_id:48416 AJ229200.1 anoxic bulk soil flooded rice microcosm clone BSV45 clone 2.21.2.1.2.1.3623 OTU 1 seq prokMSA_id:46961 AY043084.1 Bacillus circulans 2.21.2.1.2.1.3626 OTU 7 seqs prokMSA_id:14976 L14013.1 Bacillus sphaericus prokMSA_id:14977 L14014.1 Bacillus sphaericus prokMSA_id:14978 L14011.1 Bacillus sphaericus prokMSA_id:14979 L14015.1 Bacillus sphaericus prokMSA_id:14980 L14016.1 Bacillus sphaericus prokMSA_id:14981 L14012.1 Bacillus sphaericus prokMSA_id:14982 L14010.1 Bacillus sphaericus 2.21.2.1.2.1.3627 OTU 2 seqs prokMSA_id:14750 X60621.1 Paenibacillus lautus prokMSA_id:38338 AF411341.1 Bacillus licheniformis str. SK-1 2.21.2.1.2.1.3635 OTU 1 seq prokMSA_id:76677 AJ504797.1 Bacillus aeolius str. 4-1 2.21.2.1.2.1.3636 OTU 1 seq prokMSA_id:49517 AB020194.1 Bacillus sp. str. TGS337 2.21.2.1.2.1.3643 OTU 1 seq prokMSA_id:14503 Z48306.1 Bacillus vedderi 2.21.2.1.2.1.3644 OTU 1 seq prokMSA_id:27496 AJ229179.1 anoxic bulk soil flooded rice microcosm clone BSV05 clone 2.21.2.1.2.1.3649 OTU 1 seq prokMSA_id:24847 AJ296095.1 Bacillus sp. str. OS-5 2.21.2.1.2.1.3650 OTU 1 seq prokMSA_id:35487 AF414570.1 clone P3IB-17 2.21.2.1.2.1.3653 OTU 1 seq prokMSA_id:14507 X60603.1 Bacillus alcalophilus 2.21.2.1.2.1.3655 OTU 1 seq prokMSA_id:39946 AF234842.1 Bacillus sp. str. FO-011 2.21.2.1.2.1.3656 OTU 1 seq prokMSA_id:69913 AF325862.1 Bacillus licheniformis 2.21.2.1.2.1.3659 OTU 8 seqs prokMSA_id:23159 AF326368.1 Bacillus sp. str. PL-21 prokMSA_id:68788 AF483624.1 Bacillus marisflavi str. TF-11 prokMSA_id:69296 AJ391199.1 Bacillus sp. str. AS-38 prokMSA_id:79525 AF221855.1 Bacillus sp. JC1076 prokMSA_id:82070 AY205296.1 Bacillus sp. str. CR1-2 prokMSA_id:94703 AY373362.1 Bacillus sp. str. w5 prokMSA_id:104302 AY647307.1 Bacillus aquimaris str. MSU1110 prokMSA_id:104546 AY505499.1 Bacillus aquimaris str. GSP18 2.21.2.1.2.1.3661 OTU 1 seq prokMSA_id:78617 AB094471.1 Bacillus sp. str. 2216.25.2 2.21.2.1.2.1.3667 OTU 1 seq prokMSA_id:23919 X92168.1 Lake Nakuru isolate 17N1 2.21.2.1.2.1.3671 OTU 1 seq prokMSA_id:70428 AF018046.1 clone I-110 2.21.2.1.2.1.3675 OTU 1 seq prokMSA_id:79819 AY189750.1 Bacillus mojavensis str. M-1 2.21.2.1.2.1.3687 OTU 1 seq prokMSA_id:77347 AY167816.1 Filibacter limicola str. SAFN-012 2.21.2.1.2.1.3688 OTU 1 seq prokMSA_id:77521 AY167821.1 Bacillus sp. str. SAFN-006 2.21.2.1.2.1.3689 OTU 1 seq prokMSA_id:54667 AF423249.1 soil clone 335-1 2.21.2.1.2.1.3695 OTU 2 seqs prokMSA_id:15026 Z26939.1 Bacillus thermocloacae prokMSA_id:67361 AB084065.1 Bacillus sp. str. MSP06G 2.21.2.1.2.1.3704 OTU 1 seq prokMSA_id:57750 AF548877.1 Bacillus sp. str. CPB 7 2.21.2.1.2.1.3706 OTU 1 seq prokMSA_id:30966 AF302119.1 Bacillus sonorensis str. NRRL B-23155 2.21.2.1.2.1.3707 OTU 13 seqs prokMSA_id:15008 X68415.1 Bacillus globisporus prokMSA_id:15012 X54968.1 Bacillus psychrophilus prokMSA_id:15013 X54969.1 Bacillus psychrophilus prokMSA_id:15014 AF157111.1 Sporosarcina psychrophila str. 82346 prokMSA_id:15015 D16277.1 Bacillus psychrophilus prokMSA_id:33293 AJ431331.1 Bacillus sp. ikaite c21 ikaite21 prokMSA_id:39603 AJ431329.1 Bacillus sp. ikaite c1 prokMSA_id:43631 AF010009.1 soil clone prokMSA_id:45316 AJ431330.1 Bacillus sp. ikaite c5 prokMSA_id:48206 AF260711.1 Bacillus sp. str. S4 prokMSA_id:51589 AJ292316.1 Filibacter limicola str. DSM 13886T prokMSA_id:86093 AY217505.1 saturated sediment Wind Cave South Dakota clone WCB66 prokMSA_id:99640 AY660699.1 Bacillus sp. cryopeg_7 7 2.21.2.1.2.1.3715 OTU 2 seqs prokMSA_id:41580 AB049195.1 Bacillus funiculus str. NAF001 prokMSA_id:46547 AY039821.1 Bacillus sp. str. jshs2 2.21.2.1.2.1.3725 OTU 1 seq prokMSA_id:76722 AJ535639.1 Bacillus sp. R-6760 2.21.2.1.2.1.3727 OTU 1 seq prokMSA_id:46107 AB020200.1 Bacillus sp. str. TGS950 2.21.2.1.2.1.3728 OTU 1 seq prokMSA_id:26043 AB021193.1 Bacillus naganoensis str. ATCC53909 2.21.2.1.2.1.3730 OTU 2 seqs prokMSA_id:59480 AF541965.1 Bacillus baekryungensis str. SW-93 prokMSA_id:102878 AB167052.1 Bacillus sp. str. NT N166 2.21.2.1.2.1.3732 OTU 1 seq prokMSA_id:14681 Y07584.1 Drentse grassland soil clone DA026 2.21.2.1.2.1.3733 OTU 1 seq prokMSA_id:35322 AB016269.1 Bacillus sp. str. NIBH P3M5 2.21.2.1.2.1.3742 OTU 2 seqs prokMSA_id:14648 AJ237708.1 Marinibacillus marinus str. DSM 1297 prokMSA_id:23280 AB021190.1 Marinibacillus marinus str. ATCC29841 2.21.2.1.2.1.3744 OTU 1 seq prokMSA_id:17006 AF234863.1 Bacillus nealsonii str. FO-092 2.21.2.1.2.1.3754 OTU 5 seqs prokMSA_id:27345 AY047481.1 Exiguobacterium aurantiacum var. Colo. Road prokMSA_id:40496 AF343950.1 marine NBF29 prokMSA_id:81209 AY205564.1 Exiguobacterium sp. str. BTAH1 prokMSA_id:93699 AY297792.1 Exiguobacterium acetylicum str. MS 438 prokMSA_id:109950 AY818050.1 Exiguobacterium lactigenes str. 10C 2.21.2.1.2.1.3755 OTU 4 seqs prokMSA_id:14687 D55730.1 Exiguobacterium acetylicum prokMSA_id:14688 X70313.1 Exiguobacterium acetylicum prokMSA_id:68746 AF479360.1 glacial ice isolate str. SB12K-2-2 prokMSA_id:103859 AY635864.1 Exiguobacterium sp. str. BM-1 2.21.2.1.2.1.3757 OTU 4 seqs prokMSA_id:14596 AF071858.1 Bacillus sp. str. 115898 prokMSA_id:16862 AB066342.1 Bacillus sp. str. TAT105 prokMSA_id:25041 AB066341.1 Bacillus sp. str. TAT112 prokMSA_id:98060 AY397764.1 Bacillus sp. str. R-6488 2.21.2.1.2.1.3760 OTU 1 seq prokMSA_id:18100 AY030325.1 Bacillus sp. str. KL-024 2.21.2.1.2.1.3761 OTU 1 seq prokMSA_id:15009 AJ000980.2 soil clone DA114 2.21.2.1.2.1.3763 OTU 4 seqs prokMSA_id:17121 AF267509.1 Bacillus sp. Isopa9 prokMSA_id:104365 AY672761.1 Geobacillus stearothermophilus prokMSA_id:107338 AY491497.1 Geobacillus stearothermophilus prokMSA_id:107830 AY603073.1 Geobacillus sp. str. STB4 2.21.2.1.2.1.3765 OTU 1 seq prokMSA_id:14694 X86600.1 Acinetobacter sp. 2.21.2.1.2.1.3773 OTU 11 seqs prokMSA_id:18698 AB048252.1 Bacillus pumilus str. M1-9-1 prokMSA_id:55661 AJ494726.1 Bacillus pumilus EI-24-8 prokMSA_id:60382 AF513457.1 Bacillaceae isolate str. LA28 prokMSA_id:63739 AJ494734.1 Bacillus pumilus EI-44-7 prokMSA_id:63740 AJ494732.1 Bacillus pumilus EI-31-12 prokMSA_id:63741 AJ494731.1 Bacillus pumilus EI-26-8 prokMSA_id:63743 AJ494728.1 Bacillus pumilus EI-25-8 prokMSA_id:63747 AJ494727.1 Bacillus pumilus EI-24-10 prokMSA_id:64988 AY112667.1 Bacillus pumilus prokMSA_id:78259 AB098578.1 Bacillus pumilus str. TUT1009 prokMSA_id:78969 AY177362.2 Bacillus sp. str. 71a 2.21.2.1.2.1.3776 OTU 30 seqs prokMSA_id:14542 Z26930.1 Bacillus pallidus prokMSA_id:14566 Z26929.1 Bacillus species prokMSA_id:19352 AB040122.1 Bacillus sp. str. B-3 prokMSA_id:56614 AB089233.1 Bacillus sp. str. IZ3 prokMSA_id:58658 AB089235.1 Bacillus sp. str. IZ5 prokMSA_id:58660 AB089234.1 Bacillus sp. str. IZ4 prokMSA_id:58661 AB089232.1 Bacillus sp. str. H6 prokMSA_id:58662 AB089228.1 Bacillus sp. str. H2 prokMSA_id:58663 AB089230.1 Bacillus sp. str. H4 prokMSA_id:58664 AB089231.1 Bacillus sp. str. H5 prokMSA_id:58665 AB089229.1 Bacillus sp. str. H3 prokMSA_id:58666 AB089227.1 Bacillus sp. str. H1 prokMSA_id:58667 AB089226.1 Bacillus sp. str. G8 prokMSA_id:58668 AB089225.1 Bacillus sp. str. G7 prokMSA_id:58670 AB089223.1 Bacillus sp. str. G5 prokMSA_id:58671 AB089221.1 Bacillus sp. str. G3 prokMSA_id:58672 AB089220.1 Bacillus sp. str. G2 prokMSA_id:58673 AB089219.1 Bacillus sp. str. G1 prokMSA_id:58674 AB089218.1 Bacillus sp. str. F2 prokMSA_id:58675 AB089216.1 Bacillus sp. str. E3 prokMSA_id:58676 AB089217.1 Bacillus sp. str. F1 prokMSA_id:58678 AB089214.1 Bacillus sp. str. E1 prokMSA_id:74568 AB089222.1 Bacillus sp. str. G4 prokMSA_id:87853 AJ564609.1 soil clone prokMSA_id:87910 AJ564615.1 soil clone prokMSA_id:99231 AY639816.1 Bacillus sp. IS-2004 prokMSA_id:100406 AY583458.1 Bacillus sp. str. E53-10 prokMSA_id:102182 AY566220.1 Bacillus sp. str. BS1 prokMSA_id:104664 AY554279.1 Bacillus sp. str. JH1 prokMSA_id:107381 AY566219.1 Bacillus sp. str. BL8 2.21.2.1.2.1.3778 OTU 1 seq prokMSA_id:14997 X70321.1 Kurthia zopfii 2.21.2.1.2.1.3779 OTU 2 seqs prokMSA_id:14577 U20384.1 Bacillus infernus prokMSA_id:14581 U20385.1 Bacillus infernus 2.21.2.1.2.1.3781 OTU 1 seq prokMSA_id:17639 AF275706.1 cf. Bacillus sp. isolate str. T1 2.21.2.1.2.1.3783 OTU 1 seq prokMSA_id:48809 AF394173.1 simulated blackwater bioreactor isolate str. BW21 bacterium 2.21.2.1.2.1.3784 OTU 1 seq prokMSA_id:73669 AF423297.1 soil clone 889-1 2.21.2.1.2.1.3785 OTU 2 seqs prokMSA_id:71532 AJ315075.1 Bacillus decolorationis str. LMG 19507 prokMSA_id:72277 AJ316304.1 Bacillus decolorationis str. LMG 21001T 2.21.2.1.2.1.3802 OTU 10 seqs prokMSA_id:14702 AB020208.1 Bacillus pumilus str. OM-F6 prokMSA_id:19779 AY030327.1 Bacillus pumilus str. KL-052 prokMSA_id:23057 AF275714.1 cf. Bacillus sp. isolate str. Z6 prokMSA_id:39910 AJ315067.1 Bacillus sp. LMG 19499 prokMSA_id:63744 AJ494729.1 Bacillus pumilus EI-26-5 prokMSA_id:77426 AY167882.1 Bacillus pumilus str. SAFN-034 prokMSA_id:77484 AY167886.1 Bacillus pumilus str. SAFN-001 prokMSA_id:77556 AY167879.1 Bacillus pumilus str. SAFR-032 prokMSA_id:82672 AY260861.1 Bacillus pumilus str. WN694 prokMSA_id:86314 AY260864.1 Bacillus pumilus str. WN691 2.21.2.1.2.1.3805 OTU 1 seq prokMSA_id:24211 AF286485.1 Bacillus sp. str. VAN26 2.21.2.1.2.1.3818 OTU 6 seqs prokMSA_id:35852 AY030335.1 Bacillus licheniformis str. KL-176 prokMSA_id:50052 AJ293011.2 Bacillus licheniformis str. EI-34-6 prokMSA_id:56458 AF397062.1 Bacillus licheniformis str. AB111114 prokMSA_id:75073 AY162135.1 Bacillus licheniformis str. HAZ6-17 prokMSA_id:75819 AY162134.1 Bacillus licheniformis str. GA1-17 prokMSA_id:77543 AF372616.1 Bacillus licheniformis str. Mo1 2.21.2.1.2.1.3820 OTU 1 seq prokMSA_id:40827 AY030332.1 Bacillus subtilis str. KL-120 2.21.2.1.2.1.3827 OTU 9 seqs prokMSA_id:24269 AF423299.1 soil clone 911-1 prokMSA_id:24811 AF423263.1 soil clone 432-1 prokMSA_id:55942 AF483625.1 Bacillus aquimaris str. TF-12 prokMSA_id:69789 AJ250318.1 Bacillus shackletonii str. LMG 18435 prokMSA_id:71698 AF547209.1 Bacillus acidogenesis str. 105-2 prokMSA_id:72894 AF326373.1 Bacillus sp. str. SG-1 prokMSA_id:90462 AB099708.1 Bacillus vietnamensis str. 15-1 prokMSA_id:104173 AY690683.1 Bacillus sp. str. SC09 prokMSA_id:108082 AJ786805.1 Bacillus sp. R-22834 2.21.2.1.2.1.3831 OTU 1 seq prokMSA_id:36125 AY030328.1 Bacillus licheniformis str. KL-068 2.21.2.1.2.1.3836 OTU 7 seqs prokMSA_id:14548 AB002645.1 G+C gram-positive HTA426 prokMSA_id:14549 AB002646.1 G+C gram-positive HTA462 prokMSA_id:58656 AB089239.1 Bacillus sp. str. G6 prokMSA_id:58657 AB089238.1 Bacillus sp. str. VA2 prokMSA_id:106222 AY551907.1 Bacillus sp. str. B31 prokMSA_id:106248 AY682096.1 Geobacillus stearothermophilus str. 46 prokMSA_id:106383 AY551908.1 Geobacillus stearothermophilus str. BL1 2.21.2.1.2.1.3843 OTU 5 seqs prokMSA_id:19002 AF169527.1 Bacillus sp. str. NRS-1186 prokMSA_id:19225 AF169536.1 Bacillus sp. str. NRS-250 prokMSA_id:23256 AF169494.1 Bacillus sp. str. B-1876 prokMSA_id:34645 AF435435.1 Bacillus sphaericus str. 205y prokMSA_id:36376 AF169513.1 Bacillus sp. str. BD-113 2.21.2.1.2.1.3844 OTU 2 seqs prokMSA_id:14500 X76445.1 Bacillus species prokMSA_id:70518 AB043860.1 Bacillus sp. str. S2 2.21.2.1.2.1.3845 OTU 3 seqs prokMSA_id:43776 AB034705.1 compost clone 4-11 prokMSA_id:47302 AB034716.1 compost clone 4-74 prokMSA_id:51860 AF252326.1 hot synthetic compost clone pPD15 2.21.2.1.2.1.3848 OTU 1 seq prokMSA_id:78009 AB098576.1 Bacillus sp. str. TUT1007 2.21.2.1.2.1.385 OTU 2 seqs prokMSA_id:14552 X57309.1 Bacillus stearothermophilus prokMSA_id:104960 AY672765.1 Bacillus subtilis 2.21.2.1.2.1.3855 OTU 1 seq prokMSA_id:44986 AF348712.1 G+C Gram-positive clone MPD-16 2.21.2.1.2.1.3856 OTU 2 seqs prokMSA_id:14588 AB030930.1 Bacillus sp. str. IPso1 prokMSA_id:14589 AB030931.1 Bacillus sp. str. IPso2 2.21.2.1.2.1.3860 OTU 17 seqs prokMSA_id:16731 AF169530.1 Bacillus sp. str. NRS-156 prokMSA_id:19282 AF169538.1 Bacillus sp. str. NRS-400 prokMSA_id:19710 AF169504.1 Bacillus sp. str. B-23286 prokMSA_id:20757 AF169497.1 Bacillus sp. str. B-23279 prokMSA_id:25196 AF169506.1 Bacillus sp. str. B-23288 prokMSA_id:31780 AF169542.1 Bacillus sp. str. NRS-732 prokMSA_id:32927 AF169502.1 Bacillus sp. str. B-23284 prokMSA_id:34462 AF169500.1 Bacillus sp. str. B-23282 prokMSA_id:35652 AF169490.1 Bacillus sp. str. B-14865 prokMSA_id:39362 AF169529.1 Bacillus sp. str. NRS-1223 prokMSA_id:39772 AJ310083.1 Bacillus fusiformis str. DSM 2898T prokMSA_id:41414 AF169512.1 Bacillus sp. str. BD-111 prokMSA_id:42508 AF169546.1 Bacillus sp. str. NRS-866 prokMSA_id:43479 AF169540.1 Bacillus sp. str. NRS-718 prokMSA_id:47760 AF169503.1 Bacillus sp. str. B-23285 prokMSA_id:49078 AF169537.1 Bacillus fusiformis str. NRS-350 prokMSA_id:70299 AJ311893.1 Bacillus sphaericus subsp. fusiformis str. B3 2.21.2.1.2.1.3861 OTU 2 seqs prokMSA_id:26443 AJ229207.1 anoxic bulk soil flooded rice microcosm clone BSV55 clone prokMSA_id:43113 AJ229201.1 anoxic bulk soil flooded rice microcosm clone BSV46 clone 2.21.2.1.2.1.3867 OTU 2 seqs prokMSA_id:14471 D87035.1 Bacillus horti str. K13 prokMSA_id:14472 AF078813.1 Bacillus sp. str. 5215 2.21.2.1.2.1.3868 OTU 4 seqs prokMSA_id:37471 AJ315058.1 Bacillus sp. LMG 19490 prokMSA_id:55867 AF497256.1 Bacillus sp. str. BacB10 prokMSA_id:73499 AF295302.1 Bacillus endophyticus str. 2DT prokMSA_id:112939 AY941162.1 Bacillus sp. MSSRF 1 MSSRF1 2.21.2.1.2.1.3873 OTU 1 seq prokMSA_id:47807 AF286483.1 Bacillus sp. str. VAN22 2.21.2.1.2.1.3875 OTU 1 seq prokMSA_id:31334 AB043864.1 Bacillus sp. str. AM-001 2.21.2.1.2.1.3878 OTU 1 seq prokMSA_id:14642 AJ000982.2 soil clone DA066 2.21.2.1.2.1.3886 OTU 3 seqs prokMSA_id:14684 AB002642.1 G+C gram-positive HTA437 prokMSA_id:14685 AB002643.1 G+C gram-positive HTA506 prokMSA_id:96883 AY422984.1 Bacillus sp. str. R-6782 2.21.2.1.2.1.3893 OTU 4 seqs prokMSA_id:18610 AF218243.1 Bacillus sp prokMSA_id:21885 AF227837.1 environmental isolate 47083 prokMSA_id:26954 AF333090.1 Bacillus sp. str. A6 prokMSA_id:103946 AJ422145.1 Bacillus barbaricus str. V2-BIII-A2 2.21.2.1.2.1.3894 OTU 3 seqs prokMSA_id:55403 AJ514408.1 Sporosarcina macmurdoensis str. CMS 21w prokMSA_id:78989 AB094469.1 Sporosarcina sp. str. 2216.15.2 prokMSA_id:94088 AJ582201.1 soil collected near uranium mill tailings Gittersee/Coschuetz clone Gitt-GS-134 2.21.2.1.2.1.3895 OTU 5 seqs prokMSA_id:14584 U49080.1 Bacillus sporothermodurans prokMSA_id:14585 U49078.1 Bacillus sporothermodurans prokMSA_id:14587 U49079.1 Bacillus sporothermodurans prokMSA_id:19142 AJ302941.1 Bacillus sporothermodurans str. LMG 17897 (MB 372) prokMSA_id:27057 AJ302942.1 Bacillus sporothermodurans str. LMG 17883 (MB 385) 2.21.2.1.2.1.3896 OTU 3 seqs prokMSA_id:14573 Z26935.1 Bacillus smithii prokMSA_id:23483 AY062018.1 Bacillus sp. C7 prokMSA_id:94287 AY373319.1 Bacillus smithii str. R-7170 2.21.2.1.2.1.3898 OTU 1 seq prokMSA_id:27234 AB034710.1 compost clone 4-28 2.21.2.1.2.1.3899 OTU 1 seq prokMSA_id:14669 Y07574.2 Drentse grassland soil clone DA032 2.21.2.1.2.1.3900 OTU 71 seqs prokMSA_id:14700 D55731.1 Bacillus sp. prokMSA_id:14706 AF142575.1 Bacillus sp. str. Biosubtyl prokMSA_id:14716 X60605.1 Bacillus amyloliquefaciens prokMSA_id:14721 X68416.1 Bacillus licheniformis prokMSA_id:14723 X81131.1 Bacillus sp. prokMSA_id:14724 AJ000648.1 Bacillus sp. str. GCB-2 prokMSA_id:14746 AF058766.1 Bacillus subtilis str. TB11 prokMSA_id:17839 AF198249.1 Bacillus subtilis str. LN002 prokMSA_id:17874 AJ277905.1 Bacillus subtilis str. Lactipan prokMSA_id:20533 AF234846.1 Bacillus licheniformis str. FO-024 prokMSA_id:20987 AF234847.1 Bacillus licheniformis str. FO-026 prokMSA_id:22715 AF302125.1 Bacillus sonorensis str. NRRL B-23161 prokMSA_id:25728 AF302123.1 Bacillus sonorensis str. NNRL B-23159 prokMSA_id:28357 AY030337.1 Bacillus licheniformis str. KL-185 prokMSA_id:29247 AF302118.1 Bacillus sonorensis str. NRRL B-23154 prokMSA_id:30814 AF302120.1 Bacillus sonorensis str. NRRL B-23156 prokMSA_id:31469 AF234857.1 Bacillus licheniformis str. FO-054 prokMSA_id:32902 AF447803.1 Bacillus subtilis str. A184 prokMSA_id:33178 AF234849.1 Bacillus subtilis str. FO-029a prokMSA_id:34060 AF346496.1 Bacillus sp. str. USC13 prokMSA_id:34751 AF302124.1 Bacillus sonorensis str. NRRL B-23160 prokMSA_id:35577 AF234862.1 Bacillus licheniformis str. FO-085 prokMSA_id:36519 AY030326.1 Bacillus licheniformis str. KL-047 prokMSA_id:38139 AY071857.2 Bacillus licheniformis str. PR-1 prokMSA_id:38198 AF387515.1 Bacillus licheniformis str. KL-196 prokMSA_id:39670 AF302121.1 Bacillus sonorensis str. NRRL B-23157 prokMSA_id:40513 AB055006.1 Bacillus licheniformis str. MC-20 prokMSA_id:41068 AF234854.2 Bacillus pumilus prokMSA_id:41451 AF252321.1 hot synthetic compost clone pPD8 prokMSA_id:41964 AF302122.1 Bacillus sonorensis str. NRRL B-23158 prokMSA_id:42423 AF234848.1 Bacillus licheniformis str. FO-028 prokMSA_id:42774 AF234850.1 Bacillus subtilis str. FO-032 prokMSA_id:44878 AF234859.1 Bacillus licheniformis str. FO-074b prokMSA_id:45034 AB055007.1 Bacillus subtilis str. MC-11 prokMSA_id:45517 AY017347.1 Bacillus licheniformis str. S86 prokMSA_id:45582 AB020201.1 Bacillus sp. str. TGS1050 prokMSA_id:46335 AY030334.1 Bacillus mojavensis str. KL-154 prokMSA_id:46379 AF276309.1 Bacillus licheniformis str. B prokMSA_id:53195 AF234844.1 Bacillus licheniformis str. FO-017b prokMSA_id:55519 AY103463.1 Bacillus sp. str. CGTase prokMSA_id:58334 AF492486.1 Bacillus licheniformis str. N1 prokMSA_id:60365 AF513474.1 Bacillaceae isolate str. PH32 prokMSA_id:64682 AF516176.1 Bacillus licheniformis str. YW1258 prokMSA_id:71867 AF234852.1 Bacillus sp. str. FO-035b prokMSA_id:73877 AF387514.1 Bacillus licheniformis str. KL-182 prokMSA_id:76502 AY162132.1 Bacillus subtilis str. MA12 prokMSA_id:77146 AY162136.1 Bacillus licheniformis str. GA8 prokMSA_id:87398 AY279207.1 Bacillus subtilis str. HA401 prokMSA_id:94223 AF545570.1 Bacillus subtilis prokMSA_id:101297 AY587808.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te21R prokMSA_id:101956 AY296814.1 Bacillus subtilis str. IBT019 prokMSA_id:101989 AJ544538.1 Bacillus subtilis str. US116 prokMSA_id:102408 AY603963.1 Bacillus subtilis str. RAZ01 prokMSA_id:102618 AY587841.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te89R prokMSA_id:104821 AY672764.1 Bacillus licheniformis str. G prokMSA_id:106169 AY587817.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te35R prokMSA_id:107004 AJ846277.1 Bacillus sp. HHS10 prokMSA_id:107017 AY603657.2 Bacillus axarquiensis str. CR-119 prokMSA_id:107104 AJ831841.1 Bacillus sp. str. 41KF2a prokMSA_id:107397 AJ831843.1 Bacillus sp. str. 24K prokMSA_id:107544 AJ831844.1 Bacillus sp. str. 28K prokMSA_id:107809 AY608741.1 Bacillus velezensis str. CR-14B prokMSA_id:108037 AB193437.1 Bacillus sp. str. M4(KU) prokMSA_id:109513 AY462217.1 Bacillus subtilis str. DF61 prokMSA_id:109743 AY462197.1 Bacillus subtilis str. DF7 prokMSA_id:110184 AY867792.1 Bacillus subtilis str. C2 prokMSA_id:110417 AY462215.1 Bacillus sp. str. DF56 prokMSA_id:111931 AY897211.1 Bacillus subtilis str. ZJY-116 prokMSA_id:112354 AY887082.1 Bacillus subtilis prokMSA_id:112545 AY911607.1 Bacillus subtilis str. GB16 prokMSA_id:112579 AY907698.1 Bacillus subtilis str. CICC10080 2.21.2.1.2.1.3904 OTU 6 seqs prokMSA_id:14679 X76447.1 Bacillus species prokMSA_id:31425 AB043862.1 Bacillus sp. str. KX6 prokMSA_id:41217 AB055093.1 Bacillus sp. str. KSM-KP43 prokMSA_id:42189 AB043865.1 Bacillus horikoshii str. DSM8719 prokMSA_id:45974 AB055097.1 Bacillus sp. str. NCIB12289 prokMSA_id:68751 AF479350.1 glacial ice isolate str. G200-T16 2.21.2.1.2.1.3909 OTU 31 seqs prokMSA_id:14720 AB018485.1 Bacillus subtilis str. OG-01-fringe prokMSA_id:14731 D26185.1 Bacillus subtilis prokMSA_id:14734 AB017587.1 Bacillus sp. str. SSA3 prokMSA_id:14741 AB017588.1 Bacillus sp. str. PM3 prokMSA_id:14742 AB017589.1 Bacillus sp. str. SS7 prokMSA_id:14743 AB017590.1 Bacillus sp. str. SS9 prokMSA_id:14744 AB017591.1 Bacillus sp. str. TKSP21 prokMSA_id:14745 AB017592.1 Bacillus sp. str. TKSP24 prokMSA_id:14747 AF142574.1 Bacillus subtilis str. ATCC9799 prokMSA_id:14748 AB018487.1 Bacillus subtilis str. ATCC 21331 prokMSA_id:24519 AF465648.1 Bacillus sp. str. YNPRH8P-2 prokMSA_id:25248 AB021191.1 Bacillus mojavensis str. IFO15718 prokMSA_id:28010 AB021198.1 Bacillus vallismortis str. DSM11031 prokMSA_id:31397 AF333249.1 Bacillus subtilis str. GXD9901 prokMSA_id:36092 AF233579.1 Bacillus subtilis var. chungkookjang str. BS-4 var. prokMSA_id:38471 AB050667.1 Bacillus sp. str. PP19-H3 prokMSA_id:43444 AB021181.1 Bacillus atrophaeus str. JCM9070 prokMSA_id:50400 AF287011.1 Bacillus subtilis str. O9 prokMSA_id:62519 AF399911.1 Bacillus subtilis subsp. endophyticus prokMSA_id:68699 AF489591.1 Bacillus amyloliquefaciens prokMSA_id:68752 AF479349.1 glacial ice isolate str. G200-SD1 prokMSA_id:72314 AF411118.1 Bacillus sp. str. Bch1 prokMSA_id:74771 AB053351.1 Bacillus sp. str. BBK-1 prokMSA_id:76767 AY162128.1 Bacillus subtilis str. HAZ14 prokMSA_id:77829 AY172514.1 Bacillus subtilis BS-1 prokMSA_id:78407 AY172513.1 Bacillus subtilis BS-2 prokMSA_id:78621 AY160223.1 Bacillus sp. str. X3 prokMSA_id:78627 AY176768.1 Bacillus subtilis str. HJ19 prokMSA_id:78954 AY176764.1 Bacillus subtilis str. HJ11 prokMSA_id:80904 AY189749.1 Bacillus sp. str. B-6 prokMSA_id:84380 AY233455.1 Bacillus sp. str. B1(XC) 2.21.2.1.2.1.3916 OTU 1 seq prokMSA_id:28732 AB034715.1 compost clone 4-57 2.21.2.1.2.1.3918 OTU 9 seqs prokMSA_id:14727 X60646.1 Bacillus subtilis prokMSA_id:49632 AF408261.1 Bacillus sp. clone KL-37-1-5 prokMSA_id:57756 AF549498.1 Bacillus subtilis prokMSA_id:77901 AB098574.1 Bacillus sp. str. TUT1010 prokMSA_id:78577 AY176766.1 Bacillus sp. B2(XC) str. B2 prokMSA_id:80665 AY189745.1 Bacillus sp. str. B-2 prokMSA_id:84256 AY279209.1 Bacillus subtilis str. IBT015 prokMSA_id:91214 AB115958.1 Bacillus subtilis str. KT1002 prokMSA_id:109332 AY820954.1 Bacillus nematotocita str. B-16 2.21.2.1.2.1.3920 OTU 1 seq prokMSA_id:23337 AF275707.1 cf. Bacillus sp. isolate str. T10 2.21.2.1.2.1.3926 OTU 1 seq prokMSA_id:26101 X92160.1 Lake Bogoria isolate 64B4 2.21.2.1.2.1.429 OTU 1 seq prokMSA_id:14646 X60616.1 Bacillus firmus 2.21.2.1.2.1.462 OTU 1 seq prokMSA_id:14533 Z26927.1 "Bacillus denitrificans" 2.21.2.1.2.1.571 OTU 1 seq prokMSA_id:14568 Z26922.1 "Bacillus caldotenax" 2.21.2.1.2.1.829 OTU 1 seq prokMSA_id:78768 AY191842.1 Geobacillus sp. str. YMTC1049 2.21.2.1.3 Caryophanaceae 5 seqs 2.21.2.1.3.1 sf_1 5 seqs 2.21.2.1.3.1.3285 OTU 1 seq prokMSA_id:64192 AJ491302.1 Caryophanon latum str. DSM 14151 2.21.2.1.3.1.3658 OTU 3 seqs prokMSA_id:14993 X70315.1 Caryophanon tenue prokMSA_id:14994 X70314.1 Caryophanon latum prokMSA_id:64190 AJ491303.1 Caryophanon tenue str. DSM 14152 2.21.2.1.3.1.3817 OTU 1 seq prokMSA_id:14991 X70319.1 Caryophanon latum 2.21.2.1.4 Halobacillaceae 150 seqs 2.21.2.1.4.1 sf_1 150 seqs 2.21.2.1.4.1.3265 OTU 1 seq prokMSA_id:70340 AJ316302.1 Virgibacillus carmonensis str. LMG 20964 T 2.21.2.1.4.1.3268 OTU 1 seq prokMSA_id:19694 AY057394.1 Lentibacillus salicampi str. SF-20 2.21.2.1.4.1.3308 OTU 1 seq prokMSA_id:42141 AF326365.1 Bacillus sp. str. MB-9 2.21.2.1.4.1.3309 OTU 2 seqs prokMSA_id:14608 D16275.1 Bacillus pantothenticus prokMSA_id:42215 AB039331.1 Virgibacillus pantothenticus str. M1-4 2.21.2.1.4.1.3320 OTU 1 seq prokMSA_id:16928 AJ238042.1 Filobacillus milosensis str. SH714T (=DSM 13259T) 2.21.2.1.4.1.3344 OTU 25 seqs prokMSA_id:39733 AJ291752.1 Halobacillus sp. str. K3-1 prokMSA_id:60368 AF513472.1 Bacillaceae isolate str. PH28 prokMSA_id:60380 AF513459.1 Bacillaceae isolate str. LA42 prokMSA_id:63146 AY121438.1 Halobacillus sp. str. YIM-kkny15 prokMSA_id:63158 AY121429.1 Halobacillus sp. str. YIM-kkny2 prokMSA_id:71975 AJ291754.1 Halobacillus sp. str. I7 prokMSA_id:72101 AJ291753.1 Halobacillus sp. str. I3 prokMSA_id:80237 AY190534.1 Halobacillus locisalis str. MSS-155 prokMSA_id:92555 AY351395.1 Halobacillus sp. str. D-8 prokMSA_id:101925 AB189301.1 Halobacillus sp. str. SA-Hb1 prokMSA_id:102374 AB189304.1 Halobacillus sp. str. SA-Hb4 prokMSA_id:105463 AY505517.1 Halobacillus salinus str. GSP59 prokMSA_id:105666 AB167023.1 Halobacillus sp. str. NT N104 prokMSA_id:106135 AB189294.1 Halobacillus sp. str. JM-Hb prokMSA_id:106776 AB189298.1 Halobacillus sp. str. IS-Hb4 prokMSA_id:107171 AB167045.1 Halobacillus sp. str. NT N143 prokMSA_id:109526 AB198767.1 Halobacillus sp. str. SA-Hb10 prokMSA_id:109850 AB198757.1 Halobacillus sp. str. IS-Hb8 prokMSA_id:110527 AB198761.1 Halobacillus sp. str. SBC-Hb1 prokMSA_id:110702 AB198759.1 Halobacillus sp. str. IA-Hb1 prokMSA_id:110746 AB198758.1 Halobacillus sp. str. IS-Hb9 prokMSA_id:111103 AB198760.1 Halobacillus sp. str. SB-Hb1 prokMSA_id:111118 AB198765.1 Halobacillus sp. str. SA-Hb8 prokMSA_id:111228 AB198762.1 Halobacillus sp. str. RG-Hb prokMSA_id:111708 AY881246.1 Halobacillus yeomjeoni str. MSS-402 2.21.2.1.4.1.3367 OTU 1 seq prokMSA_id:21848 AJ309562.1 Bacillus nitritophilus str. IB-256 2.21.2.1.4.1.3408 OTU 2 seqs prokMSA_id:41371 AB021188.1 Bacillus halophilus str. DSM4771 prokMSA_id:42873 AJ243920.2 Bacillus halophilus str. DSM 4771T 2.21.2.1.4.1.3480 OTU 1 seq prokMSA_id:47685 AJ309561.1 Bacillus litoralis str. IB-B4 2.21.2.1.4.1.3488 OTU 1 seq prokMSA_id:66685 AF500003.1 Halobacillus salinus str. HSL-3 2.21.2.1.4.1.3552 OTU 1 seq prokMSA_id:56418 AB087828.1 Paraliobacillus ryukyuensis 2.21.2.1.4.1.3554 OTU 1 seq prokMSA_id:34922 AJ309559.1 Bacillus litoralis str. IB-B8 2.21.2.1.4.1.3582 OTU 1 seq prokMSA_id:14616 X62174.1 Halobacillus halophilus 2.21.2.1.4.1.3603 OTU 1 seq prokMSA_id:63156 AY121432.1 Amphibacillus sp. str. YIM-kkny6 2.21.2.1.4.1.3633 OTU 65 seqs prokMSA_id:14496 X76439.1 Bacillus species prokMSA_id:14504 X76448.1 Bacillus species prokMSA_id:14505 X76436.1 Bacillus alcalophilus prokMSA_id:14506 AB018595.1 Bacillus alcaliinulinus str. AM31 prokMSA_id:14511 X76440.1 Bacillus species prokMSA_id:14512 AF142576.1 Bacillus sp. str. Enterogermina prokMSA_id:14513 X76441.1 Bacillus species prokMSA_id:14515 AF078814.1 Bacillus sp. str. 4830 prokMSA_id:14516 X76438.1 Bacillus species prokMSA_id:16342 AF172603.1 Bacillus clausii str. Enterogermina prokMSA_id:17073 AY066000.1 Bacillus clausii str. za-w-3 prokMSA_id:18096 AF172997.1 Bacillus clausii prokMSA_id:20318 AB029256.1 Bacillus pseudofirmus str. OF4 prokMSA_id:21446 AJ297494.1 Bacillus clausii str. SIN Enterogermina prokMSA_id:22363 AB043853.1 Bacillus sp. str. O-4 prokMSA_id:24084 X92158.1 Lake Bogoria isolate 66B4 prokMSA_id:24551 AF329475.1 Bacillus clausii str. LMG 19634 prokMSA_id:25923 AF326122.1 Bacillus sp. XE22-4-1 prokMSA_id:31103 AB043851.1 Bacillus sp. str. N-1 prokMSA_id:32171 AJ431332.1 Bacillus sp. ikaite 27 ikaite27 prokMSA_id:34505 AJ297498.1 Bacillus clausii str. SIN84 Enterogermina prokMSA_id:36285 AB027713.1 Bacillus halodurans str. AH-101 prokMSA_id:37519 AB043841.1 Bacillus sp. str. 169 prokMSA_id:37620 AB043843.1 Bacillus sp. str. 17-1 prokMSA_id:37901 AJ297493.1 Bacillus clausii str. T Enterogermina prokMSA_id:38275 AB043845.1 Bacillus sp. str. 27-1 prokMSA_id:40868 AB043839.1 Bacillus sp. str. 13 prokMSA_id:41599 AB043850.1 Bacillus sp. str. K12-5 prokMSA_id:42836 AJ297492.1 Bacillus clausii str. N/R Enterogermina prokMSA_id:42958 AJ297495.1 Bacillus clausii str. O/C84 Enterogermina prokMSA_id:42999 AJ297496.1 Bacillus clausii str. N/R84 Enterogermina prokMSA_id:46525 AJ297497.1 Bacillus clausii str. T84 Enterogermina prokMSA_id:46785 AB043857.1 Bacillus sp. str. 2b-2 prokMSA_id:47686 AB043842.1 Bacillus sp. str. 8-1 prokMSA_id:47837 AF406790.1 Bacillus pseudofirmus str. FTU prokMSA_id:49611 AJ297491.1 Bacillus clausii str. O/C Enterogermina prokMSA_id:55141 AY152839.1 Bacillus clausii prokMSA_id:63157 AY121430.1 Salibacillus sp. str. YIM-kkny3 prokMSA_id:69971 AB043855.1 Bacillus sp. str. IC prokMSA_id:70502 AJ507321.1 Bacillus sp. str. NER prokMSA_id:71598 AF329474.1 Bacillus clausii str. LMG 19610 prokMSA_id:72213 AF137020.1 Bacillus sp. str. WW3-SN6 prokMSA_id:73573 AB043859.1 Bacillus sp. str. H167 prokMSA_id:76944 AJ519637.1 uranium mill tailings soil sample clone Sh765B-AG-44 sp. prokMSA_id:84032 AY258614.2 Bacillus patagoniensis PAT 05 prokMSA_id:99329 AB111932.2 Bacillus sp. str. T31 prokMSA_id:99792 AB111935.1 Bacillus clausii str. S23 prokMSA_id:101804 AY553128.1 Bacillus sp. str. GSP69 prokMSA_id:101960 AY553129.1 Bacillus sp. str. GSP77 prokMSA_id:104259 AB188090.1 Bacillus oshimae str. K11 prokMSA_id:109011 AY793550.1 Bacillus sp. str. MLB-2 prokMSA_id:109033 AJ865469.1 Bacillus arseniciselenatis str. DSM 15340 prokMSA_id:111408 AB201801.1 Bacillus clausii str. M-29 prokMSA_id:111530 AB201796.1 Bacillus clausii str. Y-76 prokMSA_id:111589 NC_006582.1 Bacillus clausii str. KSM-K16 prokMSA_id:111807 AB201795.1 Bacillus pseudofirmus str. -40-2 prokMSA_id:112110 AB201794.1 Bacillus clausii str. 221 prokMSA_id:112145 AB201793.1 Bacillus clausii str. 221 prokMSA_id:112192 AP006627.1 Bacillus clausii str. KSM-K16 prokMSA_id:112193 AB201799.1 Bacillus pseudofirmus str. 124-1 prokMSA_id:112353 AB201792.1 Bacillus clausii str. 221 prokMSA_id:112358 AB201797.1 Bacillus clausii str. Y-76 prokMSA_id:112416 AB201798.1 Bacillus clausii str. Y-76 prokMSA_id:113679 AY914067.1 Bacillus sp. -5B prokMSA_id:114386 AY914066.1 Bacillus sp. -5A 2.21.2.1.4.1.3639 OTU 11 seqs prokMSA_id:27556 AJ315060.1 Virgibacillus picturae str. LMG 19492 T prokMSA_id:28572 AF326364.1 Bacillus sp. str. MB-7 prokMSA_id:28827 AF326362.1 Bacillus sp. str. MB-3 prokMSA_id:35899 AF326359.1 Bacillus sp. str. MB-1 prokMSA_id:39597 AJ276808.1 Virgibacillus picturae str. LMG-19416 prokMSA_id:63154 AY121431.1 amplified with primers F8-27 and R1529-1546 isolate str. YIM-kkny4 prokMSA_id:70179 AJ316297.1 Virgibacillus picturae str. LMG 20959 prokMSA_id:103312 AB167055.1 Oceanobacillus sp. str. J23 prokMSA_id:103381 AB189323.1 Virgibacillus sp. str. JM-Vb prokMSA_id:106323 AY505535.1 Virgibacillus picturae str. GSP52 prokMSA_id:106481 AY505536.1 Virgibacillus picturae str. GSP60 2.21.2.1.4.1.3692 OTU 1 seq prokMSA_id:22996 AF275698.1 cf. Gracilibacillus sp. isolate str. F10 2.21.2.1.4.1.3700 OTU 1 seq prokMSA_id:23741 AJ391200.1 Adriatic Sea isolate str. AS-39 2.21.2.1.4.1.3702 OTU 1 seq prokMSA_id:62835 AJ496807.1 Amphibacillus xylanus str. DSM 6626 2.21.2.1.4.1.3712 OTU 1 seq prokMSA_id:14603 X82436.1 Bacillus species 2.21.2.1.4.1.3714 OTU 4 seqs prokMSA_id:14611 AB010863.2 Oceanobacillus iheyensis str. HTE831 prokMSA_id:59386 NC_004193.1 Oceanobacillus iheyensis HTE831 prokMSA_id:102936 AB189320.1 Bacillus sp. str. SA-B1 prokMSA_id:110585 BA000028.3 Oceanobacillus iheyensis str. HTE831 2.21.2.1.4.1.3718 OTU 1 seq prokMSA_id:14604 AF036922.1 Gracilibacillus halotolerans str. NN 2.21.2.1.4.1.3726 OTU 5 seqs prokMSA_id:14612 AJ009793.1 Virgibacillus marismortui str. 123 prokMSA_id:73885 AF166093.1 Bacillus sp. 2-9-3 prokMSA_id:103083 AB189321.1 Bacillus sp. str. SA-B2 prokMSA_id:106008 AY505533.1 Virgibacillus marismortui str. GSP17 prokMSA_id:111316 AB197851.1 Virgibacillus sp. str. SA-Vb1 Sh18-3 2.21.2.1.4.1.3734 OTU 1 seq prokMSA_id:14609 AJ012667.1 Virgibacillus proomii str. LMG 12370 2.21.2.1.4.1.3749 OTU 1 seq prokMSA_id:14615 X90834.1 Marinococcus albus str. DSM 20748 2.21.2.1.4.1.3756 OTU 1 seq prokMSA_id:63140 AY121439.1 Salibacillus sp. str. YIM-kkny16 2.21.2.1.4.1.3758 OTU 1 seq prokMSA_id:63143 AY121435.1 Amphibacillus sp. str. YIM-kkny10 2.21.2.1.4.1.3769 OTU 1 seq prokMSA_id:63145 AY121437.1 Gracilibacillus sp. str. YIM-kkny13 2.21.2.1.4.1.3780 OTU 1 seq prokMSA_id:46172 AJ315056.1 Virgibacillus necropolis str. LMG 19488 2.21.2.1.4.1.3849 OTU 3 seqs prokMSA_id:14614 X94558.1 Halobacillus litoralis prokMSA_id:44334 AJ310149.1 Halobacillus trueperi str. DSM 10404T prokMSA_id:66422 AJ486874.1 Halobacillus karajensis str. DSM 14948 2.21.2.1.4.1.3892 OTU 9 seqs prokMSA_id:39395 AB021186.1 Bacillus halodenitrificans str. ATCC49067 prokMSA_id:87957 AJ488179.2 Bacillus sp. NT16 prokMSA_id:99005 AB189318.1 Bacillus sp. str. JM-B prokMSA_id:99166 AB189319.1 Bacillus sp. str. Sag-B1 prokMSA_id:100652 AY505521.1 Halobacillus sp. str. GSP47 prokMSA_id:102564 AB167050.1 Bacillus sp. str. NT N164 prokMSA_id:103593 AY543168.1 Bacillus halodenitrificans str. SF-121 prokMSA_id:103594 AB167057.1 Bacillus sp. str. SB J81 prokMSA_id:103737 AY543169.1 Bacillus halodenitrificans str. DSM 10037 2.21.2.1.4.1.3913 OTU 2 seqs prokMSA_id:14602 X72876.1 Bacillus species prokMSA_id:26016 AJ238041.1 Bacillus haloalkaliphilus str. DSM 5271T 2.21.2.1.5 Listeriaceae 47 seqs 2.21.2.1.5.1 sf_1 47 seqs 2.21.2.1.5.1.3319 OTU 1 seq prokMSA_id:16370 Y12757.1 Listeria-like organism clone 2.21.2.1.5.1.3364 OTU 4 seqs prokMSA_id:15034 X98526.1 Listeria grayi str. ATCC19120 prokMSA_id:15041 X56150.1 Listeria grayi prokMSA_id:69153 AJ515521.1 Listeria grayi str. CECT 942 ATCC 25401 CCM 5990 CCRC 14849 CCTM La 3535 CCUG 4984 CIP 76.1240 CNCTC Li 69/89 DSMZ 20596 NCAIM B.01372 NCTC 108120 SLCC 4426 = Welshimer F-9 prokMSA_id:72152 AJ515520.1 Listeria grayi str. CECT 931 ATCC 19120 CCM 5887 CCRC 14842 CCTM La 3533 4983 CCUG 5118 CDC KC697 CIP 68.18 CLIP 12518 CNCTC 70/89 DSMZ 20601 NCTC 10815 Seeliger Li 2080 = SLCC 332/64 2.21.2.1.5.1.3701 OTU 42 seqs prokMSA_id:15030 X98529.1 Listeria ivanovii prokMSA_id:15032 S55473.1 Listeria innocua prokMSA_id:15036 M58822.1 Listeria monocytogenes prokMSA_id:15037 X98528.1 Listeria subsp. ivanovii str. CLIP12510 prokMSA_id:15039 X98527.1 Listeria innocua str. ATCC33090 prokMSA_id:15040 X98531.1 Listeria seeligeri str. ATCC35976 prokMSA_id:15042 S55472.1 Listeria monocytogenes prokMSA_id:15044 U84150.1 Listeria monocytogenes str. DD 6821 prokMSA_id:15045 X98530.1 Listeria monocytogenes str. LL195 prokMSA_id:15046 X98532.1 Listeria welshimeri str. ATCC35897 prokMSA_id:46413 AL596172.1 Listeria innocua str. Clip11262 prokMSA_id:49371 AL591983.1 Listeria monocytogenes str. EGD-e prokMSA_id:50304 NC_003210.1 Listeria monocytogenes EGD-e prokMSA_id:53366 NC_003212.1 Listeria innocua Clip11262 prokMSA_id:53770 AL591981.1 Listeria monocytogenes str. EGD-e prokMSA_id:54496 AL596170.1 Listeria innocua str. Clip11262 prokMSA_id:59299 AJ508749.1 Listeria monocytogenes str. CECT 4032 prokMSA_id:59488 AJ416946.3 Listeria seeligeri prokMSA_id:59524 AJ416945.1 Listeria seeligeri str. CECT 941 prokMSA_id:69445 AJ515515.1 Listeria monocytogenes str. CECT 935 ATCC 19111 CCM 5576 CIP 78.31 LMG 21263 Paterson LS/2 = Seeliger Li20 prokMSA_id:69491 AJ515513.1 Listeria monocytogenes str. CECT 932 ATCC 19111 CCM 5576 CIP 78.31 LMG 21263 Paterson LS/2 = Seeliger Li20 prokMSA_id:69663 AJ515519.1 Listeria welshimeri str. CECT 919 ATCC 35897 CCM 3971 CCRC 14851= CCTM La 2679 CCUG 15529 CIP 81.49 CNCTC Li 54/88 DSMZ 20650 LMG 11389 NCTC 11857 SLCC 5334 = Welshimer V-8 prokMSA_id:70623 AJ515512.1 Listeria monocytogenes str. CECT 4031 ATCC 15313 CCUG 15526 CIP 82.110 DSMZ 20600 NCTC 10357 = SLCC 53 prokMSA_id:74622 AJ515518.1 Listeria seeligeri str. CECT 917 ATCC 35967 CCM 3970 CCTM La 2678 CCUG 15530 CIP 100100 CNCTC Li 55/88 DSMZ 20751 LMG 11386 NCTC 11856 SLCC 3954 = Weiss 1120 prokMSA_id:99486 AJ535693.1 Listeria innocua 169 prokMSA_id:99513 AE017330.1 Listeria monocytogenes str. 4b F2365 prokMSA_id:99644 AJ535694.1 Listeria welshimeri 23 prokMSA_id:99796 AJ535695.1 Listeria innocua 107 prokMSA_id:99955 AJ535696.1 Listeria sp. 151 prokMSA_id:100113 AJ535697.1 Listeria monocytogenes 44 prokMSA_id:100269 AJ535698.1 Listeria seeligeri 50 prokMSA_id:100429 AJ535699.1 Listeria seeligeri 52 prokMSA_id:101322 NZ_AADR01000125.1 Listeria monocytogenes str. 4b H7858 prokMSA_id:103289 NZ_AADR01000078.1 Listeria monocytogenes str. 4b H7858 prokMSA_id:103746 AE017322.1 Listeria monocytogenes str. 4b F2365 prokMSA_id:104174 AJ535700.1 Listeria sp. 87 prokMSA_id:104328 AJ535701.1 Listeria monocytogenes 97 prokMSA_id:104510 AE017327.1 Listeria monocytogenes str. 4b F2365 prokMSA_id:104662 AE017328.1 Listeria monocytogenes str. 4b F2365 prokMSA_id:105516 AADR01000125.1 Listeria monocytogenes str. 4b H7858 prokMSA_id:107462 AADR01000078.1 Listeria monocytogenes str. 4b H7858 prokMSA_id:108681 NC_002973.5 Listeria monocytogenes str. 4b F2365 2.21.2.1.6 Paenibacillaceae 290 seqs 2.21.2.1.6.1 sf_12 1 seq 2.21.2.1.6.1.3568 OTU 1 seq prokMSA_id:14391 Y16129.1 Paenibacillus sp. str. C-168 2.21.2.1.6.2 sf_1 289 seqs 2.21.2.1.6.2.319 OTU 1 seq prokMSA_id:14469 Y14579.1 Ammoniphilus oxalaticus str. RAOx-FF 2.21.2.1.6.2.3247 OTU 1 seq prokMSA_id:26683 AJ345022.1 Paenibacillus sp. str. DSM 34 2.21.2.1.6.2.3248 OTU 5 seqs prokMSA_id:14409 X77792.1 "Paenibacillus viscosus" prokMSA_id:35596 AB021184.1 Paenibacillus ehimensis str. IFO 15659 prokMSA_id:42610 AF130254.1 Paenibacillus koreensis str. YC300 prokMSA_id:63561 AY116664.1 Paenibacillus ehimensis str. KCTC 3747 prokMSA_id:67227 AF492843.1 Bacillus sp. str. NK395 2.21.2.1.6.2.3254 OTU 1 seq prokMSA_id:44415 AJ345019.1 Paenibacillus sp. str. DSM 1482 2.21.2.1.6.2.3257 OTU 1 seq prokMSA_id:70633 AF309814.1 synthetic wastewater tmbr15-20 complete clone 2.21.2.1.6.2.3263 OTU 1 seq prokMSA_id:34851 AF306538.1 Paenibacillus sp. str. EE17 2.21.2.1.6.2.3264 OTU 1 seq prokMSA_id:54854 AF320074.1 Paenibacillus sp. str. NBT 2.21.2.1.6.2.3274 OTU 1 seq prokMSA_id:73761 AJ431333.1 Paenibacillus sp. ikaite c7 2.21.2.1.6.2.3282 OTU 2 seqs prokMSA_id:14465 X77840.1 Oxalophagus oxalicus prokMSA_id:14466 Y14581.1 Oxalophagus oxalicus str. DSM 5503T 2.21.2.1.6.2.3299 OTU 20 seqs prokMSA_id:14441 D78456.1 Brevibacillus borstelensis str. NRRL NRS-818 prokMSA_id:14444 D78464.1 Brevibacillus reuszeri str. NRRL NRS-1206 prokMSA_id:25731 AF228763.1 Brevibacillus sp. Riau prokMSA_id:48767 AB066340.1 Brevibacterium sp. str. BN53-1 prokMSA_id:63084 AF378230.1 Brevibacillus borstelensis str. LMG 15536 prokMSA_id:67396 AJ457160.1 Brevibacillus sp. str. AV-Pb prokMSA_id:71869 AF252328.1 Brevibacillus sp. HC6 prokMSA_id:72424 AF378233.1 Brevibacillus agri str. LMG 18172 prokMSA_id:91137 AB116134.1 Brevibacillus borstelensis str. M63 prokMSA_id:94939 AY373322.1 Brevibacillus borstelensis str. R-7201 prokMSA_id:97889 AY397767.1 Brevibacillus sp. str. R-6469 prokMSA_id:100059 AJ715380.1 Brevibacillus levickii str. R-22009 prokMSA_id:100216 AJ715381.1 Brevibacillus levickii str. LMG 22482 prokMSA_id:100376 AJ715382.1 Brevibacillus levickii str. R-12318 prokMSA_id:100531 AJ715383.1 Brevibacillus levickii str. R-22010 prokMSA_id:100684 AJ715384.1 Brevibacillus levickii str. R-22013 prokMSA_id:103153 AB112715.1 Brevibacillus reuszeri str. DSM 9887T prokMSA_id:104351 AJ586382.1 Brevibacillus borstelensis str. R-16402 prokMSA_id:105346 AJ715379.1 Brevibacillus levickii str. R-12317 prokMSA_id:107534 AB112721.1 Brevibacillus borstelensis str. DSM 6347T 2.21.2.1.6.2.3310 OTU 1 seq prokMSA_id:14368 AJ131119.1 Paenibacillus sp. vortex 2.21.2.1.6.2.3312 OTU 3 seqs prokMSA_id:71863 AF309809.1 synthetic wastewater tmbr11-29 complete clone wastewater prokMSA_id:71897 AF309811.1 synthetic wastewater tmbr11-6 complete clone wastewater prokMSA_id:98371 AY382189.1 Paenibacillus sp. str. R-7652 2.21.2.1.6.2.3316 OTU 2 seqs prokMSA_id:14435 Z26921.1 "Paenibacillus thermoruber" prokMSA_id:20029 AY062020.1 Brevibacillus sp. SL8 2.21.2.1.6.2.3322 OTU 8 seqs prokMSA_id:35842 AF353683.1 Paenibacillus naphthalenovorans str. PR-N5 prokMSA_id:51767 AF353681.1 Paenibacillus naphthalenovorans str. PR-N1; ATCC BAA-206; DSM14203 prokMSA_id:71096 AF353703.1 Paenibacillus naphthalenovorans str. PS-N1 prokMSA_id:73273 AF353690.1 Paenibacillus naphthalenovorans str. PR-N16 prokMSA_id:81244 AB091337.1 Paenibacillus sp. str. YK20 prokMSA_id:81558 AB091334.1 Paenibacillus sp. str. YK5 prokMSA_id:81627 AB091336.1 Paenibacillus sp. str. YK19 prokMSA_id:82278 AB091335.1 Paenibacillus sp. str. YK12 2.21.2.1.6.2.3325 OTU 1 seq prokMSA_id:18657 AJ272249.1 Paenibacillus azoreducens str. CM1 2.21.2.1.6.2.3329 OTU 6 seqs prokMSA_id:49008 AY030080.1 Paenibacillus larvae subsp. pulvifaciens str. ATCC 49843 subsp. prokMSA_id:49027 AY030079.1 Paenibacillus subsp. larvae str. NRRL B-3555 subsp. prokMSA_id:77692 AB073204.1 Paenibacillus larvae subsp. pulvifaciens str. DSM 3615 prokMSA_id:77802 AB073205.1 Paenibacillus subsp. larvae str. DSM 7030 prokMSA_id:101575 AY530294.1 Paenibacillus subsp. larvae str. DSM 7030 prokMSA_id:101751 AY530295.1 Paenibacillus larvae str. DSM 3615 2.21.2.1.6.2.3335 OTU 1 seq prokMSA_id:38089 AJ316314.1 Paenibacillus sp. str. LMG 20244 2.21.2.1.6.2.3360 OTU 3 seqs prokMSA_id:73496 AJ316315.1 Paenibacillus sp. str. LMG 20245 prokMSA_id:103012 AY554412.1 Paenibacillus sp. 19A prokMSA_id:109715 AY847463.1 Paenibacillus sp. YB-45 2.21.2.1.6.2.3390 OTU 3 seqs prokMSA_id:14360 D85397.1 Paenibacillus illinoisensis str. NRRL NRS-1356T prokMSA_id:77327 AY167800.1 Paenibacillus sp. str. SAFN-035 prokMSA_id:78185 AB073192.1 Paenibacillus illinoisensis str. JCM 9907 2.21.2.1.6.2.3409 OTU 1 seq prokMSA_id:14402 D78465.1 Paenibacillus alginolyticus str. DSM5050T 2.21.2.1.6.2.3413 OTU 2 seqs prokMSA_id:74125 AB043868.1 Paenibacillus sp. str. 7-5 prokMSA_id:79325 AJ539171.1 soil clone AB04 2.21.2.1.6.2.3415 OTU 2 seqs prokMSA_id:84099 AF480935.1 Paenibacillus nematophilus str. NEM1a prokMSA_id:85675 AF480937.1 Paenibacillus nematophilus str. NEM1b 2.21.2.1.6.2.3428 OTU 1 seq prokMSA_id:39053 AF312215.1 South Africa: KwaZulu-Natal Province Pietermaritzburg clone Y14-1 bacterium 2.21.2.1.6.2.3437 OTU 1 seq prokMSA_id:77745 AB073201.1 Paenibacillus apiarius str. DSM 5581 2.21.2.1.6.2.3445 OTU 2 seqs prokMSA_id:16553 AF227835.1 clinical isolate 31295 prokMSA_id:28024 AF227859.1 clinical isolate 31293 2.21.2.1.6.2.3450 OTU 1 seq prokMSA_id:28165 AJ320491.1 Paenibacillus alvei str. DSM 29 2.21.2.1.6.2.3505 OTU 10 seqs prokMSA_id:14354 M77489.1 Paenibacillus validus prokMSA_id:14406 S73541.1 Paenibacillus validus prokMSA_id:14408 D78320.1 Paenibacillus validus prokMSA_id:27850 D87094.1 Bacillus sp. str. F39-1 prokMSA_id:37347 AF353676.1 Paenibacillus validus str. DS-N1 prokMSA_id:38639 D87095.1 Bacillus sp. str. N7 prokMSA_id:71092 AF353697.1 Paenibacillus validus str. PR-P9 prokMSA_id:74208 AF353695.1 Paenibacillus validus str. PR-P1 prokMSA_id:78225 AB073203.1 Paenibacillus validus str. JCM 9077 prokMSA_id:103176 AB186915.1 Paenibacillus sp. str. KBC101 2.21.2.1.6.2.3525 OTU 2 seqs prokMSA_id:40413 AB021183.1 Paenibacillus chitinolyticus str. IFO 15660 prokMSA_id:73805 AF181573.1 Paenibacillus cf. polymyxa 6 2.21.2.1.6.2.3530 OTU 1 seq prokMSA_id:37854 AJ345023.1 Paenibacillus agaridevorans str. DSM 1355 2.21.2.1.6.2.3535 OTU 1 seq prokMSA_id:75026 AY154493.1 earthworm intestine clone wi79 2.21.2.1.6.2.3559 OTU 6 seqs prokMSA_id:14383 AJ223987.1 Paenibacillus graminis str. RSA19 prokMSA_id:21436 AJ251193.1 Paenibacillus sp. str. TRO4 (=LMG 19081) prokMSA_id:42642 AJ297714.1 Paenibacillus sp. P15-9 prokMSA_id:46666 AF378700.1 Paenibacillus turicensis str. MOL722 prokMSA_id:47416 AF378696.1 Paenibacillus turicensis str. MOL722 prokMSA_id:47969 AF378699.1 Paenibacillus turicensis str. MOL722 2.21.2.1.6.2.3564 OTU 1 seq prokMSA_id:18675 AF346495.1 Bacillus sp. str. USC14 2.21.2.1.6.2.3565 OTU 3 seqs prokMSA_id:48149 AJ316013.1 Paenibacillus stellifer str. IS1 prokMSA_id:83547 AY244777.1 Paenibacillus sp. str. 2002-56410 prokMSA_id:85150 AY099471.1 Paenibacillus stellifer str. IS-5 2.21.2.1.6.2.3567 OTU 1 seq prokMSA_id:14390 Y16128.1 Paenibacillus sp. str. T-168 2.21.2.1.6.2.3577 OTU 29 seqs prokMSA_id:14362 X57305.1 Paenibacillus macquariensis prokMSA_id:14363 AJ223991.1 Bacillus longisporus str. LMG13275T prokMSA_id:14365 X60625.1 Paenibacillus macquariensis prokMSA_id:19669 AF324200.2 Paenibacillus sp. V2 str. V22 prokMSA_id:21862 AB074690.1 Japan:Lake Biwa isolate str. D-St(1)-3 prokMSA_id:27118 AB052967.1 Bacillus sp. FE1 prokMSA_id:40008 AB052966.1 Bacillus sp. BE1 prokMSA_id:51524 AB074739.1 Japan:Lake Biwa isolate str. S-St(1)-6A prokMSA_id:55541 AJ495806.1 Paenibacillus sp. p22D prokMSA_id:77701 AB073190.1 Paenibacillus amylolyticus str. JCM 9906 prokMSA_id:78079 AB073191.1 Paenibacillus pabuli str. JCM 9074 prokMSA_id:78345 AB073193.1 Paenibacillus macquariensis str. DSM 2 prokMSA_id:78619 AB094470.1 Paenibacillus sp. str. 2216.15.16 prokMSA_id:84855 AY230772.1 Bacillus sp. 'Smarlab BioMol-2301285' str. Smarlab BioMol 2301285 'Smarlab prokMSA_id:90362 AY315170.1 Glacier isolate str. FJS42 prokMSA_id:91146 AY337581.1 Paenibacillus sp. str. CC-SB818D1 prokMSA_id:91452 AY345554.1 Lake Wai'ele'ele water isolate str. H17 prokMSA_id:91692 AY345535.1 Lake Wai'ele'ele water clone LWSR-64 prokMSA_id:92017 AB115960.1 Paenibacillus amylolyticus str. KT5501 prokMSA_id:96930 AY395017.1 Paenibacillus sp. NAB13 prokMSA_id:99679 AB045094.1 Paenibacillus pabuli str. HSCC 492T (NRRL NRS-924T) prokMSA_id:99695 AY509233.1 Paenibacillus amylolyticus str. S120 prokMSA_id:99986 AJ605292.1 20CM prokMSA_id:101051 AY289507.1 Paenibacillus sp. IDA5358 prokMSA_id:104674 AB045103.1 Bacillus sp. str. HSCC 1450 (DSM 596 WL-12) prokMSA_id:104823 AB045104.1 Paenibacillus pabuli str. HSCC 473 (NRRL BD-537) prokMSA_id:104924 AY188841.1 Paenibacillus sp. str. ROO32A prokMSA_id:106427 AY605699.1 Paenibacillus pabuli prokMSA_id:106608 AY439226.1 Paenibacillus sp. GIC16 2.21.2.1.6.2.3584 OTU 1 seq prokMSA_id:14396 AJ000984.2 soil clone DA116 2.21.2.1.6.2.3591 OTU 1 seq prokMSA_id:43825 AB042938.1 Paenibacillus glycanilyticus str. DS-1 2.21.2.1.6.2.3595 OTU 1 seq prokMSA_id:84807 AY257871.1 Paenibacillus sp. str. MB 2039 2.21.2.1.6.2.3608 OTU 1 seq prokMSA_id:49631 AF378698.1 Paenibacillus turicensis str. MOL722 2.21.2.1.6.2.3630 OTU 1 seq prokMSA_id:66508 AY100579.1 clone cvf65054 2.21.2.1.6.2.3641 OTU 1 seq prokMSA_id:38999 AJ313027.1 Brevibacillus sp. MN 47.2a 2.21.2.1.6.2.3651 OTU 80 seqs prokMSA_id:14375 AJ011321.1 Paenibacillus borealis KM8 prokMSA_id:14376 AJ011322.1 Paenibacillus borealis KK19 prokMSA_id:14377 AJ011323.1 Paenibacillus borealis KK20 prokMSA_id:14378 AJ011324.1 Paenibacillus borealis KN24 prokMSA_id:14379 AJ011325.1 Paenibacillus borealis KN25 prokMSA_id:14380 AJ011326.1 Paenibacillus borealis HM26 prokMSA_id:14381 AJ011327.1 Paenibacillus borealis HM31 prokMSA_id:14384 AJ223990.1 Paenibacillus odorifer str. TOD45 prokMSA_id:14428 D16276.1 Paenibacillus polymyxa prokMSA_id:14429 AJ011687.1 Paenibacillus sp. B2 prokMSA_id:14431 AJ223988.1 Paenibacillus polymyxa str. PMD230 prokMSA_id:14432 AJ223989.1 Paenibacillus polymyxa str. CF43 prokMSA_id:16360 AJ271157.1 Paenibacillus jamilae str. CECT 5266 B.3.-olive mill waste water prokMSA_id:20958 AF391123.1 Paenibacillus kribbensis str. AM49 prokMSA_id:22251 AF391124.1 Paenibacillus daejeonensis str. AM141 prokMSA_id:27285 AF273740.1 Paenibacillus brasilensis str. 172 prokMSA_id:28853 AJ297712.1 Paenibacillus sp. P14-7 prokMSA_id:33249 AJ302026.1 T107 prokMSA_id:38958 AJ320493.1 Paenibacillus polymyxa prokMSA_id:42808 AF355463.1 Paenibacillus polymyxa prokMSA_id:44105 AJ320494.1 Paenibacillus peoriae str. DSM 8320 prokMSA_id:50840 AJ297713.1 Paenibacillus sp. P22-9 prokMSA_id:58395 AJ297715.1 Paenibacillus sp. P51-3 prokMSA_id:64883 AF515611.1 Paenibacillus polymyxa str. GBR-1 prokMSA_id:68756 AF479345.1 glacial ice isolate str. G50-L2 prokMSA_id:71025 AB092351.1 Paenibacillus fujiensis str. Br1 prokMSA_id:71723 AF227827.1 Paenibacillus sp. str. 61724 prokMSA_id:77277 AJ318910.2 MH72 earthworm gut prokMSA_id:77429 AY167814.1 Paenibacillus sp. str. SAFN-016 prokMSA_id:77819 AB073196.1 Paenibacillus macerans str. IAM 12467 prokMSA_id:78234 AB073186.1 Paenibacillus peoriae str. DSM 8320 prokMSA_id:78235 AB073194.1 Paenibacillus chibensis str. JCM 9905 prokMSA_id:78279 AB073364.1 Paenibacillus borealis str. DSM 13118 prokMSA_id:78298 AB073189.1 Paenibacillus glucanolyticus str. DSM 5162 prokMSA_id:80385 Y13062.1 Bacillus circulans str. WSBC20030 prokMSA_id:80571 Y13061.1 Bacillus circulans str. 1-77 prokMSA_id:82473 AB046422.1 Paenibacillus sp. str. HSCC 1657 prokMSA_id:84469 AY266989.1 Paenibacillus sp. str. 436-1 prokMSA_id:84777 AY257868.1 Paenibacillus lactis str. MB 1871 prokMSA_id:85775 AB042063.1 Paenibacillus polymyxa str. IAM 13419T prokMSA_id:89987 AY302439.1 Paenibacillus polymyxa str. WY110 prokMSA_id:89996 AY090110.1 Paenibacillus elgii str. SD17 prokMSA_id:90699 AY302187.1 Paenibacillus polymyxa str. BS04 prokMSA_id:92059 AY359637.1 Paenibacillus polymyxa str. KCTC3717 prokMSA_id:92097 AY359628.1 Paenibacillus polymyxa str. GBR-501 prokMSA_id:92100 AY359619.1 Paenibacillus polymyxa str. GBR-11 prokMSA_id:92110 AY359621.1 Paenibacillus polymyxa str. GBR-462 prokMSA_id:92170 AY359629.1 Paenibacillus polymyxa str. GBR-515 prokMSA_id:92191 AY359631.1 Paenibacillus polymyxa str. GBR-602 prokMSA_id:92246 AY359627.1 Paenibacillus polymyxa str. GBR-485 prokMSA_id:92257 AY359634.1 Paenibacillus polymyxa str. KCTC1761 prokMSA_id:92293 AY359616.1 Paenibacillus polymyxa str. GBR-180 prokMSA_id:92370 AY359626.1 Paenibacillus polymyxa str. GBR-478 prokMSA_id:92405 AY359620.1 Paenibacillus polymyxa str. GBR-447 prokMSA_id:92521 AY359617.1 Paenibacillus polymyxa str. GBR-192 prokMSA_id:92572 AY359615.1 Paenibacillus polymyxa str. GBR-27 prokMSA_id:92583 AY359635.1 Paenibacillus polymyxa str. KCTC3554 prokMSA_id:92624 AY359625.1 Paenibacillus polymyxa str. GBR-477 prokMSA_id:92641 AY359633.1 Paenibacillus polymyxa str. KCTC1663 prokMSA_id:92844 AY359636.1 Paenibacillus polymyxa str. KCTC3627 prokMSA_id:92846 AY359624.1 Paenibacillus polymyxa str. GBR-472 prokMSA_id:92852 AY359630.1 Paenibacillus polymyxa str. GBR-540 prokMSA_id:92866 AY359622.1 Paenibacillus polymyxa str. GBR-464 prokMSA_id:93032 AY359623.1 Paenibacillus polymyxa str. GBR-465 prokMSA_id:93129 AY359632.1 Paenibacillus polymyxa str. GBR-603 prokMSA_id:93130 AY359618.1 Paenibacillus polymyxa str. GBR-325 prokMSA_id:94822 AB119649.2 Paenibacillus abekawaensis str. MG1 prokMSA_id:94987 AY373363.1 Paenibacillus sp. str. g2 prokMSA_id:98920 AY323612.1 Paenibacillus timonensis str. 2301032 prokMSA_id:99549 AY556411.1 Bacillus sp. str. SGE4 prokMSA_id:99868 AY556413.1 Bacillus sp. str. SSL3 prokMSA_id:101148 AY257870.1 Paenibacillus lactis str. MB 2035 prokMSA_id:104165 AY635866.1 Paenibacillus sp. str. BM-7 prokMSA_id:104695 AY556409.1 Bacillus sp. str. SGE2 prokMSA_id:104949 AY587797.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te79A prokMSA_id:107579 AY323610.1 Paenibacillus timonensis str. 2301032 prokMSA_id:107727 AY323611.1 Paenibacillus timonensis str. 2301032 prokMSA_id:110036 AY839866.1 Paenibacillus sp. str. B518 prokMSA_id:110061 AY772704.1 Paenibacillus polymyxa str. CP7 prokMSA_id:112626 AY912078.1 Paenibacillus polymyxa 2.21.2.1.6.2.3677 OTU 8 seqs prokMSA_id:14454 D78462.1 Aneurinibacillus migulanus str. ATCC9999 prokMSA_id:14455 X77789.1 "Alicyclobacillus acidovorans" prokMSA_id:14456 X94195.1 Aneurinibacillus migulanus prokMSA_id:14457 D78455.1 Aneurinibacillus aneurinilyticus str. ATCC12856 prokMSA_id:14458 X94194.1 Aneurinibacillus aneurinolyticus prokMSA_id:99023 AB112724.1 Aneurinibacillus aneurinilyticus str. DSM 5562T prokMSA_id:105534 AB101592.1 Aneurinibacillus aneurinilyticus str. DSM5562T prokMSA_id:107829 AB112723.1 Aneurinibacillus migulanus str. DSM 2895T 2.21.2.1.6.2.3708 OTU 1 seq prokMSA_id:72157 AJ315076.1 Paenibacillus sp. LMG 19508 2.21.2.1.6.2.3711 OTU 1 seq prokMSA_id:27158 AF433165.1 Paenibacillus hongkongensis str. HKU3 2.21.2.1.6.2.3716 OTU 1 seq prokMSA_id:14413 AJ005795.1 Thermobacillus xylanilyticus str. XE 2.21.2.1.6.2.3720 OTU 1 seq prokMSA_id:17949 AF182807.1 Paenibacillus velasolus str. P1 2.21.2.1.6.2.3721 OTU 1 seq prokMSA_id:39149 AF395027.1 Paenibacillus sp. str. TB9 2.21.2.1.6.2.3729 OTU 1 seq prokMSA_id:51119 AB046581.1 Paenibacillus sp. str. SM-XY60 (JCM 10914) SM-XY60 2.21.2.1.6.2.3731 OTU 1 seq prokMSA_id:48429 AJ229223.1 anoxic bulk soil flooded rice microcosm clone BSV79 clone 2.21.2.1.6.2.3735 OTU 1 seq prokMSA_id:14423 X77846.1 Paenibacillus durum 2.21.2.1.6.2.3748 OTU 1 seq prokMSA_id:28736 AF290916.1 Paenibacillus daejeonensis str. AP-20 2.21.2.1.6.2.3751 OTU 3 seqs prokMSA_id:14415 D78466.1 Paenibacillus curdlanolyticus str. IFO15724T prokMSA_id:27161 X99987.1 aquatic clone 1200-12 prokMSA_id:78004 AB073202.1 Paenibacillus curdlanolyticus str. DSM 10247 2.21.2.1.6.2.3766 OTU 1 seq prokMSA_id:14430 AB024598.1 Bacillus sp. str. GL1 2.21.2.1.6.2.3787 OTU 1 seq prokMSA_id:50002 AJ229199.1 anoxic bulk soil flooded rice microcosm clone BSV44 clone 2.21.2.1.6.2.3790 OTU 6 seqs prokMSA_id:14460 X94196.1 Bacillus thermoaerophilus prokMSA_id:14461 X94197.1 Bacillus thermoaerophilus prokMSA_id:38737 AF252327.1 Bacillus sp. HC5 prokMSA_id:71633 AF309816.1 synthetic wastewater tmbr15-26 complete clone wastewater prokMSA_id:72629 AF309813.1 synthetic wastewater tmbr15-12 complete clone wastewater prokMSA_id:99336 AB112726.1 Aneurinibacillus thermoaerophilus str. DSM 10154T 2.21.2.1.6.2.3793 OTU 1 seq prokMSA_id:34044 AF312217.1 South Africa: KwaZulu-Natal Province Pietermaritzburg clone Y14-3 bacterium 2.21.2.1.6.2.3797 OTU 2 seqs prokMSA_id:14445 D16271.1 "Paenibacillus laterosporus " prokMSA_id:107388 AB112720.1 Brevibacillus laterosporus str. DSM 25T 2.21.2.1.6.2.3811 OTU 2 seqs prokMSA_id:67648 AJ438302.1 Paenibacillus cookii str. R-11600 prokMSA_id:71618 AJ250319.1 Paenibacillus cookii str. LMG 18437 2.21.2.1.6.2.3814 OTU 1 seq prokMSA_id:39587 AJ252574.1 agricultural soil SI-4 2.21.2.1.6.2.3819 OTU 1 seq prokMSA_id:31440 AJ345024.1 Paenibacillus sp. str. DSM 1481 2.21.2.1.6.2.3824 OTU 6 seqs prokMSA_id:14367 AF021924.1 Paenibacillus campinasensis str. 324 prokMSA_id:69797 AB043867.1 Paenibacillus sp. str. S39 prokMSA_id:71978 AB043869.1 Paenibacillus sp. str. AG430 prokMSA_id:72049 AB043866.1 Paenibacillus sp. str. 38-2 prokMSA_id:77903 AB073187.1 Paenibacillus campinasensis str. JCM 11200 prokMSA_id:85263 AY237109.1 Paenibacillus sp. str. A11 2.21.2.1.6.2.3828 OTU 1 seq prokMSA_id:51632 AF369870.1 Aneurinibacillus sp. str. DB4 2.21.2.1.6.2.3857 OTU 2 seqs prokMSA_id:43033 AJ303338.1 clone SCBP-S17 prokMSA_id:73768 AJ303340.1 clone SCBP-S21 2.21.2.1.6.2.3876 OTU 1 seq prokMSA_id:22513 AF395033.1 Paenibacillus sp. str. G296-78 2.21.2.1.6.2.3877 OTU 2 seqs prokMSA_id:14386 AF071861.1 Paenibacillus lentimorbus str. ATCC14707(T) prokMSA_id:77770 AB073199.1 Paenibacillus lentimorbus str. ATCC 14707 2.21.2.1.6.2.3884 OTU 1 seq prokMSA_id:40165 AB048256.1 Brevibacillus sp. str. MC-Z 2.21.2.1.6.2.3891 OTU 1 seq prokMSA_id:27231 AJ345021.1 Paenibacillus sp. str. DSM 1474 2.21.2.1.6.2.3901 OTU 1 seq prokMSA_id:77934 AB073362.1 Paenibacillus alginolyticus str. DSM 5050 2.21.2.1.6.2.3905 OTU 1 seq prokMSA_id:22302 AF378695.1 Paenibacillus turicensis str. MOL722 2.21.2.1.6.2.3910 OTU 1 seq prokMSA_id:40899 AJ288158.1 Paenibacillus sp. -234 2.21.2.1.6.2.3911 OTU 6 seqs prokMSA_id:14357 D78473.1 Paenibacillus lautus str. NRRL NRS-666T prokMSA_id:14369 D78472.1 Paenibacillus lautus str. CCM 3892 prokMSA_id:50444 AF395029.1 Paenibacillus sp. str. SB45-2B prokMSA_id:77752 AB073188.1 Paenibacillus lautus str. JCM 9073 prokMSA_id:78091 AJ491842.1 Paenibacillus lautus str. C2 prokMSA_id:83727 AJ509004.1 Paenibacillus sp. 6495m-C2 2.21.2.1.6.2.3917 OTU 14 seqs prokMSA_id:14436 U65892.1 Brevibacillus agri str. NRRL NRS-1689 prokMSA_id:14442 D78463.1 Brevibacillus parabrevis str. IFO12334 prokMSA_id:14449 D78459.1 Brevibacillus choshinensis str. HPD52 prokMSA_id:14451 D78454.1 Brevibacillus agri str. NRRL NRS-1219 prokMSA_id:27343 AB048253.1 Brevibacillus agri str. MC-C1 prokMSA_id:34619 AF408264.1 Brevibacillus sp. clone KL-13-4-4 prokMSA_id:38327 AF408265.1 Brevibacillus sp. clone KL-13-4-10 prokMSA_id:44838 AB039334.1 Brevibacillus agri str. M1-5 prokMSA_id:55876 AB090804.1 Brevibacillus sp. str. EK-287 prokMSA_id:60320 AB090803.1 Brevibacillus sp. str. YT-658 prokMSA_id:72419 AF378231.1 Brevibacillus invocatus str. LMG 18167 prokMSA_id:79457 AB101593.1 Brevibacillus brevis str. DSM30T prokMSA_id:82855 AJ438305.2 Brevibacillus sp. str. R-12868 prokMSA_id:113283 AY739693.1 lubricant-contaminated soil clone KU26 2.21.2.1.6.2.3922 OTU 4 seqs prokMSA_id:14387 AF071859.1 Paenibacillus popilliae str. ATCC14706(T) prokMSA_id:14395 AF071860.1 Paenibacillus popilliae str. NRRL B-4081 prokMSA_id:17491 AJ320490.1 Paenibacillus thiaminolyticus str. DSM 7262 prokMSA_id:78039 AB073198.1 Paenibacillus popilliae str. ATCC 14706 2.21.2.1.6.2.625 OTU 1 seq prokMSA_id:14467 Y14580.1 Ammoniphilus oxalivorans str. RAOx-FS 2.21.2.1.7 Sporolactobacillaceae 61 seqs 2.21.2.1.7.1 sf_1 61 seqs 2.21.2.1.7.1.3324 OTU 13 seqs prokMSA_id:14478 D16285.1 "Sporolactobacillus laevis" prokMSA_id:14479 D16289.1 Sporolactobacillus racemicus prokMSA_id:14480 D16274.1 "Bacillus myxolacticus" prokMSA_id:14481 D16291.1 Sporolactobacillus racemicus prokMSA_id:14482 D16286.1 "Sporolactobacillus laevis " prokMSA_id:14483 D16269.1 Bacillus laevolacticus prokMSA_id:14484 D16287.1 "Sporolactobacillus laevis " prokMSA_id:14486 D16270.1 Bacillus laevolacticus prokMSA_id:14488 D16278.1 "Bacillus racemilacticus" prokMSA_id:14491 D16290.1 Sporolactobacillus racemicus prokMSA_id:101964 AJ698860.1 Sporolactobacillus nakayamae subsp. racemicus str. DSM 16324 prokMSA_id:102604 AJ634661.1 Sporolactobacillus kofuensis str. DSM 11701 prokMSA_id:102914 AJ634663.2 Sporolactobacillus subsp. nakayamae str. DSM 11696 2.21.2.1.7.1.3365 OTU 1 seq prokMSA_id:63834 AF454300.1 Bacillus sp. clone ML615J-19 2.21.2.1.7.1.3442 OTU 1 seq prokMSA_id:14475 X90835.1 Marinococcus halophilus str. DSM 20408 2.21.2.1.7.1.3444 OTU 1 seq prokMSA_id:14476 AB015022.1 halophilic lake isolate str. MBIC3303 2.21.2.1.7.1.3502 OTU 6 seqs prokMSA_id:14509 X76446.1 Bacillus species prokMSA_id:14510 X76443.2 Bacillus species prokMSA_id:70984 AJ316316.1 Bacillus sp. str. LMG 21005 prokMSA_id:77491 AY167815.1 Bacillus gibsonii str. SAFN-015 prokMSA_id:99480 AB111933.2 Bacillus gibsonii str. T32 prokMSA_id:103155 AY737309.1 Bacillus gibsonii str. S-2 2.21.2.1.7.1.3520 OTU 1 seq prokMSA_id:14492 D16279.1 "Bacillus racemilacticus" 2.21.2.1.7.1.3556 OTU 1 seq prokMSA_id:46071 AB043846.1 Bacillus sp. str. C-11 2.21.2.1.7.1.3622 OTU 1 seq prokMSA_id:44055 X92162.1 Lake Elmenteita isolate 3E1 2.21.2.1.7.1.3624 OTU 24 seqs prokMSA_id:14493 X76442.1 Bacillus species prokMSA_id:14495 AB002661.1 Bacillus sp. C-125 prokMSA_id:17467 AB047685.1 Bacillus okuhidensis prokMSA_id:21800 AB047684.1 Bacillus okuhidensis prokMSA_id:22552 AB043856.1 Bacillus sp. str. -59 prokMSA_id:36945 AB043844.1 Bacillus sp. str. 202-1 prokMSA_id:37869 AJ302709.1 Bacillus halodurans prokMSA_id:38836 AB043847.1 Bacillus sp. str. C-3 prokMSA_id:40528 AB021187.1 Bacillus halodurans str. ATCC27557 prokMSA_id:42445 AY017348.1 Bacillus halodurans str. MIR32 prokMSA_id:52107 AB043971.1 Bacillus halodurans prokMSA_id:53117 AB031215.1 Bacillus halodurans str. C-125 prokMSA_id:53545 AB031210.1 Bacillus halodurans str. C-125 prokMSA_id:53774 AB031211.1 Bacillus halodurans str. C-125 prokMSA_id:53960 AB031212.1 Bacillus halodurans str. C-125 prokMSA_id:54054 NC_002570.1 Bacillus halodurans C-125 prokMSA_id:54430 AB013373.1 Bacillus halodurans str. C-125 prokMSA_id:54477 AB031213.1 Bacillus halodurans str. C-125 prokMSA_id:54543 AB031209.1 Bacillus halodurans str. C-125 prokMSA_id:54652 AB031214.1 Bacillus halodurans str. C-125 prokMSA_id:94086 AF542087.1 Bacillus halodurans 314 prokMSA_id:94116 AF542086.1 Bacillus halodurans 34 prokMSA_id:105098 AY423275.1 Bacillus halodurans LBK 261 prokMSA_id:111581 BA000004.3 Bacillus halodurans str. C-125 2.21.2.1.7.1.3645 OTU 2 seqs prokMSA_id:45141 AB035091.1 Bacillus sp. KSM-S237 prokMSA_id:73180 AB043858.1 Bacillus sp. str. 1139 2.21.2.1.7.1.3747 OTU 2 seqs prokMSA_id:41956 AB043848.1 Bacillus sp. str. C-59-2 prokMSA_id:42049 AB043840.1 Bacillus sp. str. 135 2.21.2.1.7.1.3752 OTU 1 seq prokMSA_id:14474 X62171.1 Marinococcus halophilus 2.21.2.1.7.1.3879 OTU 1 seq prokMSA_id:40983 X92161.1 Lake Elmenteita isolate WE4 2.21.2.1.7.1.3882 OTU 5 seqs prokMSA_id:14477 D16283.1 Sporolactobacillus inulinus prokMSA_id:14489 D16288.1 Sporolactobacillus racemicus prokMSA_id:14490 D16284.1 Sporolactobacillus inulinus prokMSA_id:79523 AB101595.1 Sporolactobacillus inulinus str. IFO13595T prokMSA_id:102763 AJ634662.1 Sporolactobacillus terrae str. DSM 11697 2.21.2.1.7.1.3925 OTU 1 seq prokMSA_id:82109 AY196980.1 Marinococcus sp. 3019cM 2.21.2.1.8 Staphylococcaceae 150 seqs 2.21.2.1.8.1 sf_1 150 seqs 2.21.2.1.8.1.3258 OTU 10 seqs prokMSA_id:14763 L37598.1 Staphylococcus aureus prokMSA_id:14785 D83358.1 Staphylococcus auricularis prokMSA_id:23774 AF234853.1 Staphylococcus capitis str. FO-036a prokMSA_id:64566 AF467418.1 Staphylococcus sp. clone Gsetzeri3 prokMSA_id:64567 AF467416.1 Staphylococcus sp. clone Gexpansis24 prokMSA_id:77340 AY167864.1 Staphylococcus epidermidis str. SAFR-016 prokMSA_id:105836 AY748913.1 Staphylococcus sp. str. NIPHL090904/B4 prokMSA_id:106994 AY167863.1 Staphylococcus epidermidis str. SAFR-018 prokMSA_id:110552 AY864655.1 Staphylococcus sp. str. SA6 prokMSA_id:112954 AY928248.1 isolate str. 7RO1 2.21.2.1.8.1.3284 OTU 1 seq prokMSA_id:14869 X86633.1 Staphylococcus sp. str. 05-41 2.21.2.1.8.1.3292 OTU 2 seqs prokMSA_id:14913 X94559.1 Salinicoccus roseus prokMSA_id:31771 AF237976.1 Salinicoccus roseus str. MS21 2.21.2.1.8.1.3432 OTU 1 seq prokMSA_id:80961 AY188939.1 deep-sea sediment isolate str. P_wp0225 2.21.2.1.8.1.3449 OTU 1 seq prokMSA_id:37919 AJ251530.1 Jeotgalicoccus pinnipedialis str. CCUG 42722T 2.21.2.1.8.1.3486 OTU 1 seq prokMSA_id:26423 AY028927.1 Salinicoccus hispanicus str. DSM 5352 2.21.2.1.8.1.3494 OTU 3 seqs prokMSA_id:14905 Y15711.1 Macrococcus caseolyticus str. ATCC 13548 prokMSA_id:14910 D83359.1 "Macrococcus caseolyticus" prokMSA_id:61797 AB079788.1 Micrococcus luteus B-P 26 2.21.2.1.8.1.3524 OTU 8 seqs prokMSA_id:14914 L14327.1 Gemella morbillorum prokMSA_id:14916 Y13366.1 Gemella sp. str. 933-88 prokMSA_id:14918 L14326.1 Gemella haemolysans prokMSA_id:14922 Y13364.1 Gemella sanguinis str. 2045-94 prokMSA_id:14923 M58799.1 Gemella haemolysans prokMSA_id:50458 AY005051.1 Gemella sp. oral strain str. C24KA prokMSA_id:76927 AJ534689.1 Gemella haemolysans prokMSA_id:108249 AY757357.1 Gemella sanguinis str. MC-1 2.21.2.1.8.1.3545 OTU 6 seqs prokMSA_id:14784 AB002641.1 G+C gram-positive HTA563 prokMSA_id:14817 X75944.1 Staphylococcus epidermidis prokMSA_id:14891 X75943.1 Staphylococcus epidermidis prokMSA_id:48424 AY030317.1 Staphylococcus epidermidis str. JPL-7 prokMSA_id:64554 AF467430.1 Staphylococcus sp. clone Gexpansis25 prokMSA_id:77574 AE016750.1 Staphylococcus epidermidis str. ATCC 12228 ATCC 2.21.2.1.8.1.3569 OTU 13 seqs prokMSA_id:14762 L37596.1 Staphylococcus saprophyticus prokMSA_id:14823 D83374.1 Staphylococcus xylosus prokMSA_id:63475 AY121979.1 Staphylococcus sp. str. RA90 prokMSA_id:64738 AF515587.1 Staphylococcus xylosus prokMSA_id:78763 AY161046.1 Staphylococcus cohnii str. PLC-9 prokMSA_id:80662 AF468443.1 Arctic sea ice bacterum ARK9973 prokMSA_id:91071 AY345395.1 Green Lake water isolate str. G24 prokMSA_id:93337 AJ551159.1 Staphylococcus sp. An21 prokMSA_id:99913 AB166961.1 Staphylococcus sp. str. NT N1 prokMSA_id:100295 AB167011.1 Staphylococcus sp. str. NT N87 prokMSA_id:100387 AB166964.1 Staphylococcus sp. str. NT N4 prokMSA_id:103173 AB167054.1 Staphylococcus sp. str. J22 prokMSA_id:107035 AY669172.1 marine sediment OC-12 2.21.2.1.8.1.3585 OTU 1 seq prokMSA_id:25754 AY017054.1 Staphylococcus sp. str. ALE-3 2.21.2.1.8.1.3592 OTU 1 seq prokMSA_id:14862 Y12593.1 Staphylococcus caprae str. DSM 20608 2.21.2.1.8.1.3605 OTU 6 seqs prokMSA_id:14828 AB009933.1 Staphylococcus arlettae str. ATCC 43957T prokMSA_id:14901 D83366.1 Staphylococcus gallinarum prokMSA_id:64557 AF467426.1 Staphylococcus sp. clone 87-8 prokMSA_id:64564 AF467420.1 Staphylococcus sp. clone 87-5 prokMSA_id:64565 AF467417.1 Staphylococcus sp. clone 87-10 prokMSA_id:79759 AY189747.1 Staphylococcus sp. str. B-3 2.21.2.1.8.1.3613 OTU 1 seq prokMSA_id:37750 AF275710.1 Salinicoccus alkaliphilus str. T8 2.21.2.1.8.1.3628 OTU 33 seqs prokMSA_id:14765 AB009944.1 Staphylococcus pasteuri str. ATCC51129T prokMSA_id:14771 X66100.1 Staphylococcus haemolyticus prokMSA_id:14786 AB009939.1 Staphylococcus equorum str. ATCC 43958T prokMSA_id:14811 AB004764.1 symbiont prokMSA_id:14814 L37603.1 Staphylococcus warneri prokMSA_id:14816 AJ223451.1 Staphylococcus sp. 2e prokMSA_id:14818 L37601.1 Staphylococcus hominis prokMSA_id:14831 AB009940.1 Staphylococcus kloosii str. ATCC 43959T prokMSA_id:14836 X66101.1 Staphylococcus hominis prokMSA_id:14837 X86636.1 Acinetobacter sp. prokMSA_id:14857 L37600.1 Staphylococcus haemolyticus prokMSA_id:14859 AB009941.1 Staphylococcus lugdunensis str. ATCC 43809T prokMSA_id:14864 D83367.1 Staphylococcus haemolyticus prokMSA_id:14867 X86640.1 Acinetobacter sp. prokMSA_id:14877 L20250.1 Staphylococcus saprophyticus prokMSA_id:14878 AF041361.1 Staphylococcus pasteuri str. ATCC 51129 prokMSA_id:14893 AB009936.1 Staphylococcus cohnii subsp. urealyticum str. ATCC 49330T prokMSA_id:29754 AJ316320.1 Staphylococcus sp. str. LMG 21006 prokMSA_id:40009 AF200217.1 Psychrophilic marine complete isolate str. PS35 bacterium prokMSA_id:41763 AY030318.1 Staphylococcus hominis str. JPL-5 prokMSA_id:52769 AJ276810.1 Staphylococcus sp. LMG 19417 str. LMG-19417 LMG prokMSA_id:62644 AF527483.1 Staphylococcus equorum subsp. linens str. RP29 subsp. prokMSA_id:64558 AF467425.1 Staphylococcus sp. clone bottae4 prokMSA_id:64562 AF467421.1 Staphylococcus sp. clone Gexpansis9 prokMSA_id:74413 AF202011.1 cultivated isolate prokMSA_id:77345 AY167805.1 Staphylococcus hominis str. SAFN-038 prokMSA_id:78094 AJ517414.1 Staphylococcus nepalensis str. CW1 prokMSA_id:78674 AJ536435.1 Staphylococcus sp. 9:4 prokMSA_id:101806 AB179677.1 groundwater 0.2 m-filterable fraction clone KNA6-NB24 prokMSA_id:103460 AB167056.1 Staphylococcus sp. str. J33 prokMSA_id:105385 AY578092.1 Staphylococcus sp. str. 34/1 prokMSA_id:111564 AY903256.1 Staphylococcus lugdunensis str. Inje L2 prokMSA_id:112380 AY903257.1 Staphylococcus lugdunensis str. Inje L3 2.21.2.1.8.1.3638 OTU 1 seq prokMSA_id:14824 X86641.1 Acinetobacter sp. 2.21.2.1.8.1.3648 OTU 1 seq prokMSA_id:45265 AJ251987.1 Gemella sp. str. M60449/99/1 T 2.21.2.1.8.1.3654 OTU 1 seq prokMSA_id:26685 AF322002.1 Staphylococcus pettenkoferi str. B3117 2.21.2.1.8.1.3673 OTU 3 seqs prokMSA_id:28012 AY028926.1 Jeotgalicoccus psychrophilus str. YKJ-115 prokMSA_id:36078 AY038633.1 lacustrine subsurface sediment clone GL178.18 prokMSA_id:44574 AY028925.1 Jeotgalicoccus halotolerans str. YKJ-101 2.21.2.1.8.1.3684 OTU 33 seqs prokMSA_id:14764 D83360.1 Staphylococcus chromogenes prokMSA_id:14767 D83370.1 Staphylococcus lentus prokMSA_id:14768 D83373.1 Staphylococcus simulans prokMSA_id:14779 AB009943.1 Staphylococcus piscifermentans str. ATCC51136T prokMSA_id:14782 Y15753.1 Staphylococcus piscifermentans str. PU-87 prokMSA_id:14790 AF124039.1 #2 Psoroptes ovis prokMSA_id:14806 AB009945.1 Staphylococcus schleiferi subsp. coagulans str. ATCC49545T prokMSA_id:14807 D83372.1 Staphylococcus schleiferi prokMSA_id:14830 AB009934.1 Staphylococcus carnosus prokMSA_id:14834 S83566.1 Staphylococcus muscae prokMSA_id:14844 AB009946.1 Staphylococcus vitulinus str. ATCC 51145T prokMSA_id:14872 AB009938.1 Staphylococcus delphini str. ATCC 49171T prokMSA_id:14879 AB009942.1 Staphylococcus pulvereri str. ATCC 51698T prokMSA_id:14880 S83569.1 Staphylococcus sciuri prokMSA_id:14881 AB004765.1 symbiont prokMSA_id:14892 D83369.1 Staphylococcus intermedius prokMSA_id:14894 Y15750.1 Staphylococcus condimenti str. F-2 T prokMSA_id:14895 AF041359.1 Staphylococcus piscifermentans str. NRIC 1818 prokMSA_id:14898 D83364.1 Staphylococcus felis prokMSA_id:14899 D83365.1 Staphylococcus felis prokMSA_id:34155 AJ421446.1 Staphylococcus subsp. sciuri str. DSM 20345T subsp. prokMSA_id:64575 AF467407.1 Staphylococcus sp. clone Tminor30 prokMSA_id:64577 AF467406.1 Staphylococcus sp. clone Tminor17 prokMSA_id:64578 AF467405.1 Staphylococcus sp. clone Tminor25 prokMSA_id:64579 AF467404.1 Staphylococcus sp. clone Tminor27 prokMSA_id:64580 AF467403.1 Staphylococcus sp. clone Tminor19 prokMSA_id:64581 AF467402.1 Staphylococcus sp. clone Tminor24 prokMSA_id:70830 AF423242.1 soil clone 240-1 prokMSA_id:77128 AY167961.1 manure prokMSA_id:91092 AB116135.1 Staphylococcus subsp. sciuri str. T131 prokMSA_id:97108 AY395014.1 Staphylococcus lentus NAB7 prokMSA_id:102524 AB188210.1 Staphylococcus sp. str. TUT1203 prokMSA_id:104256 AY161045.1 Staphylococcus lentus str. PLC-6 2.21.2.1.8.1.3724 OTU 3 seqs prokMSA_id:14915 Y13363.1 Gemella sp. str. 1754-94 prokMSA_id:14920 Y13365.1 Gemella bergeri str. 617-93 prokMSA_id:52225 AY005050.1 Gemella sp. oral strain str. A31SC 2.21.2.1.8.1.3770 OTU 1 seq prokMSA_id:14903 Z22778.1 Staphylococcus spec. 2.21.2.1.8.1.3794 OTU 5 seqs prokMSA_id:14783 L37605.1 Staphylococcus epidermidis prokMSA_id:14795 D83363.1 Staphylococcus epidermidis prokMSA_id:21287 AF371538.1 phylotype OTU-181 swine intestine clone p-888-a5 prokMSA_id:42583 AY030340.1 Staphylococcus epidermidis str. KL-004 prokMSA_id:77465 AY167804.1 Staphylococcus epidermidis str. SAFN-039 2.21.2.1.8.1.3822 OTU 7 seqs prokMSA_id:14808 AF004220.1 Staphylococcus subsp. succinus str. AMG-D1 Dominican amber subsp. prokMSA_id:14809 AF004219.1 Staphylococcus subsp. succinus str. AMG-D2 Dominican amber subsp. prokMSA_id:21472 AJ320272.1 Staphylococcus succinus str. SB72 prokMSA_id:64553 AF467429.1 Staphylococcus sp. clone bottae10 prokMSA_id:64555 AF467428.1 Staphylococcus sp. clone 87-7 prokMSA_id:64560 AF467422.1 Staphylococcus sp. clone bottae5 prokMSA_id:64568 AF467414.1 Staphylococcus sp. clone Ggeomydis17 2.21.2.1.8.1.3865 OTU 7 seqs prokMSA_id:14908 Y15714.1 Macrococcus bovicus str. L2F4 prokMSA_id:14911 Y15712.1 Macrococcus equipercicus str. H8h3 prokMSA_id:14912 Y15713.1 Macrococcus carouselicus str. H8b16 prokMSA_id:55999 AY119686.1 Macrococcus brunensis str. CCM 4811 prokMSA_id:64393 AY119687.1 Macrococcus lamae str. CCM 4815 prokMSA_id:64394 AY119685.1 Macrococcus hajekii str. CCM 4809 prokMSA_id:89445 AJ576067.1 Macrococcus equipercicus 2.21.2.1.9 Thermoactinomycetaceae 30 seqs 2.21.2.1.9.1 sf_1 29 seqs 2.21.2.1.9.1.3301 OTU 5 seqs prokMSA_id:64299 AF517773.1 hydrothermal vent isolate str. OGL-7B prokMSA_id:78614 AB088361.1 Thermoactinomyces sp. str. 700375 prokMSA_id:78806 AB088364.1 Thermoactinomyces sp. str. H0165 prokMSA_id:78838 AB088363.1 Thermoactinomyces sp. str. C0170 prokMSA_id:78879 AB088362.1 Thermoactinomyces sp. str. 500275 2.21.2.1.9.1.3332 OTU 1 seq prokMSA_id:14559 AB002648.1 G+C gram-positive HTA1422 2.21.2.1.9.1.3407 OTU 1 seq prokMSA_id:14462 AF089890.1 Laceyella sacchari str. ATCC27349 2.21.2.1.9.1.3516 OTU 1 seq prokMSA_id:34691 AF138733.1 Thermoactinomyces dichotomicus 2.21.2.1.9.1.3539 OTU 4 seqs prokMSA_id:22272 AF138737.1 Thermoactinomyces sacchari str. KCTC 9790 () prokMSA_id:25830 AF138738.1 Thermoactinomyces sacchari prokMSA_id:33306 AJ251779.1 Thermoactinomyces sacchari str. DSM 43356T prokMSA_id:70190 AJ251777.1 Thermoactinomyces sacchari str. NCIMB 11367T 2.21.2.1.9.1.3574 OTU 1 seq prokMSA_id:46942 AB049939.1 Thermoactinomyces kribbensis str. KCTC 9933 A9500 2.21.2.1.9.1.3619 OTU 9 seqs prokMSA_id:14463 AF089891.1 Thermoactinomyces vulgaris str. ATCC43649 prokMSA_id:43719 AF367588.1 Thermoactinomyces albus str. 60013 prokMSA_id:63755 AY114167.1 Thermoactinomyces vulgaris str. RVH210302 prokMSA_id:66466 AY100626.1 clone cvf77073 prokMSA_id:101032 AF465645.1 Bacillus sp. str. YNPRH2P-1 prokMSA_id:111744 AF138732.1 Thermoactinomyces vulgaris str. KCTC 9557 () prokMSA_id:112065 AF138739.1 Thermoactinomyces vulgaris str. KCTC 9076 () prokMSA_id:112113 AF138734.1 Thermoactinomyces intermedius str. KCTC 9646 () prokMSA_id:112189 AJ251775.1 Thermoactinomyces intermedius str. ATCC 33205T 2.21.2.1.9.1.3640 OTU 2 seqs prokMSA_id:26206 AF138736.1 Thermoactinomyces putidus str. KCTC 3666 () prokMSA_id:33006 AJ251776.1 Thermoactinomyces putidus str. NCIMB 12324T 2.21.2.1.9.1.3859 OTU 1 seq prokMSA_id:41281 AJ251778.1 Thermoactinomyces sanguinis str. CCUG 38657T 2.21.2.1.9.1.3871 OTU 4 seqs prokMSA_id:14560 AB002649.1 G+C gram-positive HTA1417 prokMSA_id:14561 AB002650.1 G+C gram-positive HTA1420 prokMSA_id:14562 AB002651.1 G+C gram-positive HTA1416 prokMSA_id:14563 AB002652.1 G+C gram-positive HTA1415 2.21.2.1.9.2 sf_3 1 seq 2.21.2.1.9.2.3668 OTU 1 seq prokMSA_id:22975 AF138735.1 Thermoactinomyces peptonophilus str. KCTC 9740 () 2.21.2.2 Exiguobacterium 10 seqs 2.21.2.2.1 Unclassified 10 seqs 2.21.2.2.1.1 sf_1 10 seqs 2.21.2.2.1.1.3252 OTU 10 seqs prokMSA_id:14691 X70316.1 Exiguobacterium aurantiacum prokMSA_id:14695 AF029046.1 Benzene mineralizing consortium complete clone SB-22 prokMSA_id:30620 AF321049.1 SB22/GOBB3-111 isolate str. GOBB3-111 prokMSA_id:40417 AF227839.1 environmental isolate 61610 prokMSA_id:48885 AF275715.1 cf. Exiguobacterium sp. isolate str. Z8 prokMSA_id:73436 AJ132738.1 hydrothermal vent clone CHA3-116 prokMSA_id:75706 AJ518821.1 Exiguobacterium sp. B10 prokMSA_id:91390 AY345407.1 Lake Kauhako water isolate str. K2-67 prokMSA_id:106140 AY748915.1 Exiguobacterium sp. str. NIPHL090904/K2 prokMSA_id:107585 AY744448.1 Exiguobacterium sp. str. Exi 2.21.2.3 Lactobacillales 1178 seqs 2.21.2.3.1 Aerococcaceae 129 seqs 2.21.2.3.1.1 sf_1 129 seqs 2.21.2.3.1.1.3297 OTU 11 seqs prokMSA_id:15071 U64457.1 Aerococcus urinae str. G1-84 prokMSA_id:15072 U64458.1 Aerococcus urinae str. 1656-92 prokMSA_id:15073 U64459.1 Aerococcus urinae str. 944-94 prokMSA_id:15074 U64460.1 Aerococcus urinae str. 998-93 prokMSA_id:95500 AY422716.1 Aerococcus urinae CCUG 32514 prokMSA_id:96251 AY422712.1 Aerococcus urinae CDC 1515(85) prokMSA_id:96543 AY422713.1 Aerococcus urinae NL 95028 prokMSA_id:96593 AY422717.1 Aerococcus urinae DK E2T prokMSA_id:97674 AY422714.1 Aerococcus urinae NL 95012 prokMSA_id:98017 AY422711.1 Aerococcus urinae NL 95031 prokMSA_id:98780 AY422715.1 Aerococcus urinae CDC 3352(95) 2.21.2.3.1.1.3323 OTU 9 seqs prokMSA_id:15246 L76599.1 Lactosphaera pasteurii prokMSA_id:15254 Y17301.1 Trichococcus flocculiformis str. DSM 2094 prokMSA_id:47450 AF244372.1 Nostocoida limicola I str. Ben201 prokMSA_id:66187 AJ488077.1 chlorobenzene-degrading consortium clone IB-11 prokMSA_id:77290 AJ535705.1 Trichococcus sp. str. Coc4 prokMSA_id:102370 AJ306611.1 Trichococcus flocculiformis str. DSM 2094 prokMSA_id:108427 AY570568.1 -temperature biodegraded Canadian oil reservoir clone PL-37B5 prokMSA_id:108567 AY570695.1 sp. A15 prokMSA_id:108709 AY756594.1 Siwhaho sediment clone LJ5 2.21.2.3.1.1.3326 OTU 1 seq prokMSA_id:29998 AF255736.1 Nostocoida limicola I str. Ben206 2.21.2.3.1.1.3386 OTU 1 seq prokMSA_id:34802 AF317386.1 feedlot manure clone B87 2.21.2.3.1.1.3387 OTU 1 seq prokMSA_id:69980 AY005049.1 subgingival dental plaque clone BX005 2.21.2.3.1.1.3410 OTU 1 seq prokMSA_id:37875 AF275702.1 cf. Alkalibacterium sp. isolate str. F24 2.21.2.3.1.1.3423 OTU 1 seq prokMSA_id:48237 AF300974.1 South Atlantic Bight; approximately 200 miles offshore 80 m water on NO3 as sole nitrogen source isolate str. B16S 2.21.2.3.1.1.3425 OTU 1 seq prokMSA_id:15050 Y10772.1 Facklamia hominis str. ATCC 700628 2.21.2.3.1.1.3431 OTU 1 seq prokMSA_id:15053 Y18053.1 Facklamia languida str. 1144-97 2.21.2.3.1.1.3435 OTU 3 seqs prokMSA_id:36593 AF275700.1 cf. Alkalibacterium sp. isolate str. F1 prokMSA_id:47180 AF275703.1 cf. Alkalibacterium sp. isolate str. F27 prokMSA_id:76550 AY162943.1 Tibet: Zabuye Lake clone ZB-Z25 2.21.2.3.1.1.3466 OTU 1 seq prokMSA_id:15060 Y16426.1 Ignavigranum ruoffiae str. CCUG 37658 2.21.2.3.1.1.3470 OTU 1 seq prokMSA_id:15061 Y17312.1 Facklamia sourekii str. SS 1019 CCUG 28783 de Moor M13582 ATCC 700629 CDC1 CIP 105940 LMG 18982 = CNCTC 2/84 2.21.2.3.1.1.3471 OTU 1 seq prokMSA_id:15062 Y17820.1 Facklamia tabacinasalis str. CCUG30090 2.21.2.3.1.1.3501 OTU 1 seq prokMSA_id:27088 X92169.1 Lake Nakuru isolate WN16 2.21.2.3.1.1.3504 OTU 10 seqs prokMSA_id:55874 AB083411.1 Marinilactibacillus psychrotolerans str. M13-7 prokMSA_id:61165 AB083413.1 Marinilactibacillus psychrotolerans str. O21 prokMSA_id:61166 AB083412.1 Marinilactibacillus psychrotolerans str. O1-1 prokMSA_id:61167 AB083410.1 Marinilactibacillus psychrotolerans str. M13-6 prokMSA_id:61168 AB083409.1 Marinilactibacillus psychrotolerans str. M13-5 prokMSA_id:61171 AB083407.1 Marinilactibacillus psychrotolerans str. M13-3 prokMSA_id:61172 AB083408.1 Marinilactibacillus psychrotolerans str. M13-4 prokMSA_id:61173 AB083406.1 Marinilactibacillus psychrotolerans str. M13-2 prokMSA_id:78803 AB094468.1 Marinilactobacillus sp. str. MJYP.25.24 prokMSA_id:103175 AB159717.1 Marinilactibacillus psychrotolerans str. INCT119 2.21.2.3.1.1.3519 OTU 4 seqs prokMSA_id:15054 AF016390.1 Granulicatella elegans str. DSM 11693; B1333 prokMSA_id:15055 Y15408.1 Granulicatella elegans str. 2640-91 prokMSA_id:15056 Y15413.1 Granulicatella elegans str. 4067-96 prokMSA_id:15057 AB022026.1 Granulicatella elegans str. HHC5 2.21.2.3.1.1.3522 OTU 8 seqs prokMSA_id:15066 M58797.1 Aerococcus viridans prokMSA_id:15067 AF076639.1 Aerococcus sp. str. LV65.5:W1 prokMSA_id:15068 D87677.1 Pediococcus urinaeequi str. IFO12173 prokMSA_id:26672 AJ309980.1 Aerococcus viridans str. dtb226 prokMSA_id:39287 AF445246.1 Swine manure pit isolate str. PPC6 prokMSA_id:55490 AF548625.1 Aerococcus viridans prokMSA_id:82321 AY080967.1 Aerococcus cf. viridans clone ckl5 prokMSA_id:104296 AY626833.1 China: Shandong Province Yantai City (Yel Sea) isolate str. YTHM-17 2.21.2.3.1.1.3528 OTU 1 seq prokMSA_id:48276 AJ012666.1 Dolosicoccus paucivorans 2992-95 2.21.2.3.1.1.3537 OTU 1 seq prokMSA_id:15237 X59765.1 Alloiococcus otitis 2.21.2.3.1.1.3544 OTU 1 seq prokMSA_id:55895 AJ410303.1 Allofustis seminis str. CCUG 45438 2.21.2.3.1.1.3553 OTU 1 seq prokMSA_id:15259 Y17300.1 Desemzia incerta str. DSM 20581 2.21.2.3.1.1.3561 OTU 1 seq prokMSA_id:16452 AJ387905.1 Carnobacterium gallinarum str. DSM 4847(T) NCFB 2766(T) 2.21.2.3.1.1.3572 OTU 3 seqs prokMSA_id:15051 Y15037.1 Facklamia sp. str. 164-92 prokMSA_id:15052 Y15038.1 Facklamia sp. str. 1440-97 prokMSA_id:52354 Y15716.1 Facklamia ignava 2.21.2.3.1.1.3575 OTU 3 seqs prokMSA_id:35088 AF318316.1 Aerococcus sanguinicola str. BBMML 01 prokMSA_id:37545 AJ276512.2 Aerococcus sanguinicola str. CCUG 43001 prokMSA_id:109831 AY837833.1 Aerococcus sanguinicola 2.21.2.3.1.1.3615 OTU 1 seq prokMSA_id:23513 AJ278341.2 Aerococcus urinaehominis str. CCUG 42038b 2.21.2.3.1.1.3631 OTU 1 seq prokMSA_id:15063 D50541.1 Abiotrophia defectiva 2.21.2.3.1.1.3662 OTU 2 seqs prokMSA_id:17260 AJ308388.1 clone S37-11 prokMSA_id:41555 AJ400262.1 intestine clone S24-10 2.21.2.3.1.1.3681 OTU 3 seqs prokMSA_id:15238 AF124033.1 related to Alloiococcus otitidis (otitis) prokMSA_id:15239 AF124034.1 sheep scab mite clone #1 prokMSA_id:15240 AF124041.1 sheep scab mite clone #1 2.21.2.3.1.1.3682 OTU 1 seq prokMSA_id:15241 X70907.1 Dolosigranulum pigrum 2.21.2.3.1.1.3683 OTU 1 seq prokMSA_id:15243 S86170.1 Carnobacterium funditum 2.21.2.3.1.1.3693 OTU 1 seq prokMSA_id:73819 AF317369.1 feedlot manure clone B32 2.21.2.3.1.1.3717 OTU 1 seq prokMSA_id:15070 U64456.1 Aerococcus urinae str. F1-84 2.21.2.3.1.1.3719 OTU 1 seq prokMSA_id:15076 Y17318.1 Aerococcus christensenii str. CCUG 28826 2.21.2.3.1.1.3736 OTU 1 seq prokMSA_id:15266 Y14650.1 Desemzia incerta str. DSM 20581 2.21.2.3.1.1.3782 OTU 1 seq prokMSA_id:71345 AF317380.1 feedlot manure clone B7 2.21.2.3.1.1.3799 OTU 1 seq prokMSA_id:16600 AJ279038.1 Aerosphaera taetra str. CCUG 43036T 2.21.2.3.1.1.3833 OTU 22 seqs prokMSA_id:15257 L08623.1 Carnobacterium alterfunditum prokMSA_id:15258 Z73313.1 Carnobacterium sp. str. K1 prokMSA_id:15260 AF076637.1 Carnobacterium sp. str. LV62:W1 prokMSA_id:15261 AF113133.1 Carnobacterium sp. str. Y6 prokMSA_id:19355 AF425608.1 Carnobacterium viridans str. MPL-11 prokMSA_id:36062 AF184247.1 Carnobacterium maltaromaticum str. BA prokMSA_id:44929 AF450136.1 Carnobacterium sp. str. FTR-1 prokMSA_id:99180 AY543018.1 Carnobacterium maltaromaticum MF 130 prokMSA_id:99269 AY543031.1 Carnobacterium maltaromaticum MF 204 prokMSA_id:99426 AY543032.1 Carnobacterium maltaromaticum MF 205 prokMSA_id:99582 AY543033.1 Carnobacterium maltaromaticum MF 225 prokMSA_id:99735 AY543034.1 Carnobacterium maltaromaticum MF 226 prokMSA_id:99894 AY543035.1 Carnobacterium maltaromaticum MF 82 prokMSA_id:100049 AY543036.1 Carnobacterium divergens MF 66 prokMSA_id:100207 AY543037.1 Carnobacterium divergens MF 176 prokMSA_id:100660 AY212754.1 equine manure clone wet51 prokMSA_id:103243 AY543021.1 Carnobacterium divergens MF 156 prokMSA_id:104319 AY635867.1 Carnobacterium sp. str. BM-8 prokMSA_id:105159 AY212748.1 equine manure clone wet197 prokMSA_id:106829 AY573047.1 Carnobacterium sp. str. ARCTIC-P26 prokMSA_id:107129 AY573049.1 Carnobacterium sp. str. ARCTIC-P2 prokMSA_id:107824 AY543016.1 Carnobacterium divergens MF 109 2.21.2.3.1.1.3840 OTU 5 seqs prokMSA_id:15250 X87150.1 Lactosphaera pasteurii prokMSA_id:28044 AF394926.1 Lactosphaera sp. str. PMagG1 prokMSA_id:34045 AJ296179.1 Trichococcus palustris str. DSM 9172T prokMSA_id:47658 AJ306612.1 Trichococcus collinsii str. 37AN3 prokMSA_id:66180 AJ488083.1 chlorobenzene-degrading consortium clone IIA-2 2.21.2.3.1.1.3851 OTU 1 seq prokMSA_id:74511 Y17780.1 Eremococcus coleocola str. M1832/95/2 2.21.2.3.1.1.3854 OTU 4 seqs prokMSA_id:15245 AF061558.1 Carnobacterium sp. str. St2 prokMSA_id:56246 AB083414.1 Carnobacterium mobile str. DSM 4848 prokMSA_id:83763 AY244979.1 cow rumen clone BS28 prokMSA_id:84009 AJ427446.1 Carnobacterium sp. str. R-7279 2.21.2.3.1.1.3858 OTU 1 seq prokMSA_id:42227 AJ277381.1 Facklamia miroungae 2.21.2.3.1.1.3866 OTU 4 seqs prokMSA_id:20396 AF349724.1 Turicibacter sanguinis prokMSA_id:27545 AF371536.1 phylotype OTU-176 swine intestine clone p-2330-s962-2 prokMSA_id:29728 AF371535.1 phylotype OTU-176 swine intestine clone p-66-a5 prokMSA_id:45887 AF371534.1 phylotype OTU-176 swine intestine clone p-79-a5 2.21.2.3.1.1.3870 OTU 8 seqs prokMSA_id:15058 AB022027.1 Abiotrophia para-adiacens str. TKT1 prokMSA_id:15065 D50540.1 Abiotrophia adjacens prokMSA_id:20183 AB028411.1 prokMSA_id:26395 AB028441.1 prokMSA_id:34191 AB028421.1 prokMSA_id:54764 AB028420.1 prokMSA_id:70105 AJ312375.1 Granulicatella adiacens str. 10/833 prokMSA_id:70746 AJ312377.1 Granulicatella adiacens str. WG160 2.21.2.3.1.1.3902 OTU 2 seqs prokMSA_id:43119 AJ271861.1 Granulicatella sp. str. M658/99/3 prokMSA_id:43965 Y16546.1 Atopobacter phocae str. m1590/94/2 2.21.2.3.2 Carnobacteriaceae 7 seqs 2.21.2.3.2.1 sf_1 7 seqs 2.21.2.3.2.1.3317 OTU 2 seqs prokMSA_id:27852 AF317357.1 feedlot manure clone A77 prokMSA_id:71668 AF317367.1 feedlot manure clone B24 2.21.2.3.2.1.3358 OTU 1 seq prokMSA_id:24332 AF451276.1 Carnobacterium sp. str. D4 2.21.2.3.2.1.3536 OTU 1 seq prokMSA_id:55452 AY100576.1 clone cvf56045 2.21.2.3.2.1.3792 OTU 1 seq prokMSA_id:22650 AF451271.1 Carnobacterium sp. str. D35 2.21.2.3.2.1.3812 OTU 1 seq prokMSA_id:41252 AF276454.1 PCB-contaminated St. Lawrence River sediment clone RFLP 31E 2.21.2.3.2.1.3854 OTU 1 seq prokMSA_id:53108 AJ317963.1 Carnobacterium mobile str. DSM 4848 () 2.21.2.3.3 Enterococcaceae 153 seqs 2.21.2.3.3.1 sf_1 153 seqs 2.21.2.3.3.1.3261 OTU 5 seqs prokMSA_id:15320 AF061013.1 Enterococcus mundtii str. ATCC43186 prokMSA_id:15326 Y18340.1 Enterococcus mundtii str. NCFB 2375T prokMSA_id:44890 AJ420806.1 Enterococcus mundtii str. CECT972T prokMSA_id:62895 AB066266.1 Enterococcus mundtii str. NFRI 7393 prokMSA_id:74813 AJ301836.1 Enterococcus mundtii str. LMG 10748 2.21.2.3.3.1.3288 OTU 1 seq prokMSA_id:76127 AY167946.1 manure 2.21.2.3.3.1.3298 OTU 7 seqs prokMSA_id:15315 AF061004.1 Enterococcus saccharolyticus str. ATCC43076 prokMSA_id:15329 Y18357.1 Enterococcus saccharolyticus str. NCDO 2594T prokMSA_id:43998 AJ301839.1 Enterococcus saccharolyticus str. LMG 11427 prokMSA_id:67810 AF349930.1 Enterococcus sp. str. CR-303S prokMSA_id:72178 AJ271329.1 Enterococcus villorum str. LMG 12287 prokMSA_id:74276 AF335596.2 Enterococcus villorum str. ATCC 700913 prokMSA_id:99587 AY741386.1 silkworm intestine clone Lan-38 2.21.2.3.3.1.3318 OTU 5 seqs prokMSA_id:15302 AB015233.1 Enterococcus sp. str. GvF410 prokMSA_id:57509 AF326472.1 Enterococcus ratti prokMSA_id:60256 AF539705.1 Enterococcus ratti str. ATCC 700914 prokMSA_id:73318 AJ271856.1 Enterococcus faecalis str. UK873 traditional fermented milk prokMSA_id:100199 AY587789.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te49A 2.21.2.3.3.1.3346 OTU 1 seq prokMSA_id:37654 AF395325.1 isopod gut clone RKPsBA 2.21.2.3.3.1.3382 OTU 28 seqs prokMSA_id:15273 AF070224.1 Enterococcus faecalis str. JH2-2 prokMSA_id:15274 AF039902.1 Enterococcus faecalis prokMSA_id:15275 Y18293.1 Enterococcus faecalis prokMSA_id:26643 AF447490.1 Enterococcus faecalis str. DJ1 prokMSA_id:29590 AB036835.1 Enterococcus faecalis str. K-4 prokMSA_id:46861 AJ420803.1 Enterococcus faecalis str. CECT481T prokMSA_id:50297 AJ276460.1 Enterococcus faecalis str. P7812 prokMSA_id:58583 AB092693.1 Enterococcus faecalis str. K-4 prokMSA_id:64383 AF515223.1 Enterococcus faecalis str. RO90 prokMSA_id:76134 AB098122.1 Enterococcus faecalis str. TUA 2495L prokMSA_id:82596 AE016957.1 Enterococcus faecalis str. V583 prokMSA_id:83107 NC_004668.1 Enterococcus faecalis V583 prokMSA_id:84808 AE016950.1 Enterococcus faecalis str. V583 prokMSA_id:85425 AE016947.1 Enterococcus faecalis str. V583 prokMSA_id:85640 AE016956.1 Enterococcus faecalis str. V583 prokMSA_id:95956 AY395018.1 Enterococcus faecalis NAB11 prokMSA_id:100773 AY692453.1 Enterococcus faecalis str. SL5 prokMSA_id:100816 AY587805.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te14R prokMSA_id:104258 AB154827.1 Enterococcus faecalis str. EC-12 prokMSA_id:110344 AY850358.1 Enterococcus faecalis str. SFL prokMSA_id:112791 AY830405.1 insect gut clone 2-5 prokMSA_id:113110 AY830404.1 insect gut clone 2-4 prokMSA_id:113172 AY830401.1 insect gut clone 1-7 prokMSA_id:113505 AY830399.1 insect gut clone 1-4 prokMSA_id:113842 AY830406.1 insect gut clone 2-7 prokMSA_id:114099 AY830398.1 insect gut clone 1-2 prokMSA_id:114131 AY830402.1 insect gut clone 1-9 prokMSA_id:114269 AY830403.1 insect gut clone 2-2 2.21.2.3.3.1.3392 OTU 1 seq prokMSA_id:15276 Y17152.2 Vagococcus lutrae str. m1134/97/1; CCUG 39187 2.21.2.3.3.1.3420 OTU 18 seqs prokMSA_id:15272 AB012212.1 Enterococcus faecalis str. JCM 5803 prokMSA_id:15285 X76177.1 Enterococcus species prokMSA_id:15298 Y11621.1 Enterococcus asini str. AS2 prokMSA_id:22749 AJ276462.1 Enterococcus sp. str. P7644 prokMSA_id:28186 AF286832.1 Enterococcus haemoperoxidus str. CCM 4851T prokMSA_id:30497 AJ276352.1 Enterococcus rottae str. CCM4629 prokMSA_id:31938 AF477496.1 Enterococcus faecalis str. PL9003 prokMSA_id:35549 AJ276461.1 Enterococcus sp. str. P8403 prokMSA_id:37420 AJ301842.1 Melissococcus plutonius str. LTH 3442 prokMSA_id:40693 AJ301831.1 Enterococcus faecalis prokMSA_id:53470 AJ301841.1 Enterococcus sulfureus str. LMG 13084 prokMSA_id:62639 AJ459875.1 larval intestine clone E prokMSA_id:67813 AF349929.1 Enterococcus sp. str. CR-300S prokMSA_id:70378 AF286831.1 Enterococcus moraviensis str. CCM 4856T prokMSA_id:72148 AY028437.2 Enterococcus phoeniculicola str. JLB-1 prokMSA_id:73978 AJ133478.1 Enterococcus sp. RfL6 prokMSA_id:75810 AY167958.1 manure prokMSA_id:75898 AY167933.1 manure 2.21.2.3.3.1.3433 OTU 1 seq prokMSA_id:15292 D88824.1 Tetragenococcus muriaticus 2.21.2.3.3.1.3598 OTU 9 seqs prokMSA_id:15271 D87680.1 Tetragenococcus halophilus str. JCM5888 prokMSA_id:15291 D88668.1 Tetragenococcus halophilus str. IAM 1676 prokMSA_id:15293 AF061010.1 Enterococcus solitarius str. ATCC49428 prokMSA_id:15294 Y18338.1 Enterococcus solitarius str. NCIMB 12902T prokMSA_id:16995 AB041347.1 Tetragenococcus halophilus str. FSB101 prokMSA_id:20568 AJ301840.1 Enterococcus solitarius str. DSM 5634 prokMSA_id:20595 AJ301843.1 Tetragenococcus halophilus str. DSM 20339 prokMSA_id:36890 AB041349.1 Tetragenococcus halophilus str. FSB401 prokMSA_id:38324 AB041346.1 Tetragenococcus halophilus str. FSB201 2.21.2.3.3.1.3680 OTU 2 seqs prokMSA_id:15284 X75752.1 Melissococcus pluton prokMSA_id:15336 X75751.1 Melissococcus pluton 2.21.2.3.3.1.3713 OTU 4 seqs prokMSA_id:15279 AF061009.1 Enterococcus cecorum str. ATCC43198 prokMSA_id:15280 Y18355.1 Enterococcus cecorum str. NCDO 2674T prokMSA_id:48901 AF357562.1 mpn-isolate group 14 prokMSA_id:93993 AY365054.1 Enterococcus cecorum 2.21.2.3.3.1.3835 OTU 4 seqs prokMSA_id:15286 AB012213.1 Enterococcus faecium str. JCM 5804 prokMSA_id:37798 AJ301827.1 Enterococcus cecorum str. LMG 12902 prokMSA_id:51831 AJ243326.1 Vagococcus fessus str. m2661/98/1 prokMSA_id:74133 AJ272200.1 Enterococcus hirae str. UK 877 fermented milk 2.21.2.3.3.1.3881 OTU 67 seqs prokMSA_id:15287 AF070223.1 Enterococcus faecium str. GUCR prokMSA_id:15288 AF145258.1 Enterococcus faecium prokMSA_id:15289 AF039901.1 Enterococcus faecium prokMSA_id:15290 Y18294.1 Enterococcus faecium str. NCFB 942T prokMSA_id:15307 AF039898.1 Enterococcus gallinarum 42 prokMSA_id:15308 AF039899.1 Enterococcus casseliflavus 32 prokMSA_id:15309 AF039900.1 Enterococcus gallinarum prokMSA_id:15310 AF039903.1 Enterococcus casseliflavus prokMSA_id:15311 Y17302.1 Enterococcus hirae str. DSM 20160 prokMSA_id:15312 AF061000.1 Enterococcus durans prokMSA_id:15313 AF061002.1 Enterococcus pseudoavium str. ATCC49372 prokMSA_id:15314 AF061003.1 Enterococcus raffinosus str. Mayo Clinic laboratory strain 27 prokMSA_id:15316 AF061007.1 Enterococcus dispar str. ATCC51266 prokMSA_id:15317 AF061008.1 Enterococcus avium str. Mayo Clinic laboratory strain 23 prokMSA_id:15319 AF061012.1 Enterococcus malodoratus str. ATCC43197 prokMSA_id:15321 Y18160.1 Enterococcus gallinarum str. NCFB 2314 prokMSA_id:15323 Y18295.1 Enterococcus flavescens str. NCIMB 13226T prokMSA_id:15324 Y18296.1 Enterococcus raffinosus str. NCIMB 12901T prokMSA_id:15325 Y18339.1 Enterococcus malodoratus str. NCFB 846T prokMSA_id:15328 Y18356.1 Enterococcus pseudoavium str. NCFB 2138T prokMSA_id:15330 Y18358.1 Enterococcus dispar str. NCIMB 13000T prokMSA_id:15331 Y18359.1 Enterococcus durans str. NCFB 596T prokMSA_id:15332 Y18274.1 Enterococcus avium str. NCFB 2369T prokMSA_id:16425 AF277567.1 Enterococcus gallinarum str. MG25 prokMSA_id:17444 AJ301829.1 Enterococcus dispar str. LMG 13521 prokMSA_id:18966 AF357561.1 mpn-isolate group 13 prokMSA_id:19924 AJ420805.1 Enterococcus gallinarum str. CECT970T prokMSA_id:20443 AJ301838.1 Enterococcus raffinosus str. LMG 12999 prokMSA_id:21403 AJ309563.1 Enterococcus azikeevi str. IB-A35 prokMSA_id:25976 AB018210.1 Enterococcus faecium str. E 26 prokMSA_id:28797 AJ301832.1 Enterococcus flavescens str. LMG 13518 prokMSA_id:29774 AF135452.1 sp. str. 1275b prokMSA_id:32550 AF371532.1 phylotype OTU-328 swine intestine clone p-1938-s962-3 prokMSA_id:35969 AF395326.1 isopod gut clone RKPsAG prokMSA_id:37447 AJ301834.1 Enterococcus hirae str. LMG 6399 prokMSA_id:39621 AJ301830.1 Enterococcus faecium str. LMG 11423 prokMSA_id:40545 AJ301837.1 Enterococcus pseudoavium str. LMG 11426 prokMSA_id:42419 AJ420804.1 Enterococcus casseliflavus str. CECT969T prokMSA_id:43140 AJ301833.1 Enterococcus gallinarum str. LMG 13129 prokMSA_id:45325 AJ301825.1 Enterococcus avium str. LMG 10744 prokMSA_id:45428 AJ420799.1 Enterococcus hirae str. CECT279T prokMSA_id:45618 AJ420802.1 Enterococcus flavescens str. CECT4481T prokMSA_id:47702 AJ276354.1 Enterococcus durans str. DSM20633 prokMSA_id:47779 AJ420801.1 Enterococcus durans str. CECT411T prokMSA_id:48898 AJ301835.1 Enterococcus malodoratus str. LMG 10747 prokMSA_id:50018 AJ420800.1 Enterococcus faecium str. CECT410T prokMSA_id:50668 AF133535.1 Enterococcus avium str. CIP 103 019 prokMSA_id:51948 AF371531.1 phylotype OTU-178 swine intestine clone p-2526-18B5 prokMSA_id:62987 AF526922.1 Mars Odyssey Orbiter and encapsulation facility clone T8-20 sp. prokMSA_id:67869 AY033814.1 Enterococcus gilvus str. PQ1 prokMSA_id:72595 AY098492.1 Enterococcus sp. AK61 prokMSA_id:73484 AF367978.1 Enterococcus casseliflavus str. CCM 4870 prokMSA_id:74720 AJ276356.1 Enterococcus hirae str. DSM20160 prokMSA_id:75570 AY167960.1 manure prokMSA_id:76721 AY172570.1 Enterococcus faecium prokMSA_id:84132 AY184239.1 Enterococcus sulfureus str. A36202 prokMSA_id:88240 AY321375.1 Enterococcus sp. str. CDC PNS-E1 prokMSA_id:90221 AY321377.1 Enterococcus sp. str. CDC PNS-E3 prokMSA_id:99568 AY587785.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te32A prokMSA_id:100200 AY587801.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te95A prokMSA_id:102525 AY587828.1 Portuguese dry smoked sausages (chouricos) type Ribatejano isolate str. Te59R prokMSA_id:103652 AY587776.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te1A prokMSA_id:103891 AY587790.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te50A prokMSA_id:105262 AY587799.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te91A prokMSA_id:107412 AY665974.1 Enterococcus faecium str. 230604/ prokMSA_id:108718 AJ626904.1 R-7861 prokMSA_id:111218 AY653231.1 Enterococcus faecium str. MLG856-2 2.21.2.3.4 Lactobacillaceae 396 seqs 2.21.2.3.4.1 sf_1 396 seqs 2.21.2.3.4.1.3270 OTU 1 seq prokMSA_id:15190 X76330.1 Lactobacillus fructivorans 2.21.2.3.4.1.3275 OTU 1 seq prokMSA_id:21782 AJ306298.1 Lactobacillus hamsteri str. DSM 5661T 2.21.2.3.4.1.3278 OTU 12 seqs prokMSA_id:15178 AB024300.1 Lactobacillus kefiri str. NRIC 1693 prokMSA_id:20664 AY026751.1 Lactobacillus parabuchneri str. LMG 11457T prokMSA_id:26241 AF264701.2 Lactobacillus sp. str. JKD6 prokMSA_id:30670 AY026750.1 Lactobacillus parakefiri str. LMG 15133T prokMSA_id:33139 AF275311.1 Lactobacillus ferintoshensis str. R7-84(T) prokMSA_id:38705 AY026752.1 Lactobacillus sp. str. ACD7 prokMSA_id:87788 AY278620.1 Lactobacillus genomosp. C2 str. C4M_47 prokMSA_id:93917 AY363303.1 Lactobacillus kefiri prokMSA_id:110073 AY579584.1 Lactobacillus kefiri str. JCM 5818 prokMSA_id:110920 AY579586.1 Lactobacillus sp. CIDCA 8348 prokMSA_id:113623 AB205055.1 Lactobacillus buchneri str. JCM1115 prokMSA_id:114320 AB205056.1 Lactobacillus parabuchneri str. JCM12493 2.21.2.3.4.1.3279 OTU 1 seq prokMSA_id:52430 AF371501.1 phylotype OTU-208 swine intestine clone p-2956-9F2 2.21.2.3.4.1.3281 OTU 1 seq prokMSA_id:17309 AF371490.1 phylotype OTU-309 swine intestine clone p-2984-9F2 2.21.2.3.4.1.3302 OTU 4 seqs prokMSA_id:15130 AF157050.1 Lactobacillus sp. ASF360 str. ASF 360 prokMSA_id:31066 AJ308390.2 mouse gastrointestine clone L10-37 prokMSA_id:47413 AJ306299.1 Lactobacillus intestinalis str. DSM 6629T prokMSA_id:98005 AY239420.1 rat feces clone rc1-22(7) 2.21.2.3.4.1.3330 OTU 5 seqs prokMSA_id:36681 AF371468.1 phylotype OTU-171 swine intestine clone p-2500-18B5 prokMSA_id:39660 AF371469.1 phylotype OTU-171 swine intestine clone p-2488-18B5 prokMSA_id:45134 AF371471.1 phylotype OTU-171 swine intestine clone p-2501-18B5 prokMSA_id:84781 AB107638.1 Lactobacillus kitasatonis str. JCM 1039 prokMSA_id:85653 AB107637.1 Lactobacillus kitasatonis str. KM9212 2.21.2.3.4.1.3336 OTU 1 seq prokMSA_id:22491 AF371473.1 phylotype OTU-50 swine intestine clone p-2716-65A5 2.21.2.3.4.1.3342 OTU 7 seqs prokMSA_id:15127 Y17362.1 Lactobacillus crispatus str. DSM 20584 T prokMSA_id:16988 AF257097.1 Lactobacillus crispatus str. ATCC33820 prokMSA_id:24380 AF243172.1 Lactobacillus crispatus str. TL25a prokMSA_id:26975 AF243152.1 Lactobacillus crispatus str. KC12a prokMSA_id:33386 AF243171.1 Lactobacillus crispatus str. TL23a prokMSA_id:45385 AF243158.1 Lactobacillus crispatus str. KC35b prokMSA_id:49002 AF243169.1 Lactobacillus crispatus str. KLB79 2.21.2.3.4.1.3353 OTU 1 seq prokMSA_id:40960 AF296648.1 Lactobacillus fermentum str. 4F22 2.21.2.3.4.1.3363 OTU 7 seqs prokMSA_id:15200 AF157049.1 Lactobacillus murinus str. ASF 361 prokMSA_id:22999 AJ308393.2 mouse gastrointestine clone S25-9 prokMSA_id:24547 AF371500.1 phylotype OTU-175 swine intestine clone p-487-o2 prokMSA_id:80227 AY186045.1 Lactobacillus murinus str. MP3 prokMSA_id:90383 AY324630.1 Lactobacillus murinus str. ONS2 prokMSA_id:97991 AY239418.1 rat feces clone rc1-1(8) prokMSA_id:100825 AY522567.1 Lactobacillus animalis str. LA51 2.21.2.3.4.1.3366 OTU 1 seq prokMSA_id:84709 AY255802.1 Lactobacillus saerimneri str. GDA154 LMG 22087 DSM 16049 (T); CCUG 48462 (T) 2.21.2.3.4.1.3379 OTU 2 seqs prokMSA_id:15201 M58828.1 Lactobacillus ruminis prokMSA_id:48534 AB034090.1 rumen clone 5C3d-14 2.21.2.3.4.1.3381 OTU 1 seq prokMSA_id:49917 AF371486.1 phylotype OTU-354 swine intestine clone p-4312-4Wa3 2.21.2.3.4.1.3395 OTU 4 seqs prokMSA_id:15143 L23507.1 Lactobacillus reuteri prokMSA_id:15144 X76328.1 Lactobacillus reuteri prokMSA_id:28515 AJ308392.2 mouse gastrointestine clone S25-5 prokMSA_id:36454 AF371482.1 phylotype OTU-173 swine intestine clone p-165-a2 2.21.2.3.4.1.3418 OTU 2 seqs prokMSA_id:15208 AB001836.2 Lactobacillus subsp. aviarius prokMSA_id:15209 AB001837.2 Lactobacillus aviarius subsp. araffinosus 2.21.2.3.4.1.3452 OTU 1 seq prokMSA_id:46006 AF371502.1 phylotype OTU-208 swine intestine clone p-2923-9F2 2.21.2.3.4.1.3459 OTU 1 seq prokMSA_id:18716 AF371475.1 phylotype OTU-353 swine intestine clone p-4729-2Wb2 2.21.2.3.4.1.3475 OTU 6 seqs prokMSA_id:15164 AB005893.1 Lactobacillus collinoides str. JCM1123 prokMSA_id:38883 E16651.1 Lactobacillus sp prokMSA_id:100533 AB159218.1 Lactobacillus paracollinoides str. LA7 prokMSA_id:100688 AB159219.1 Lactobacillus sp. str. ATCC 8291 prokMSA_id:101366 AJ786664.1 Lactobacillus sp. str. DSM 20197 prokMSA_id:101535 AJ786665.1 Lactobacillus paracollinoides str. DSM 15502 2.21.2.3.4.1.3478 OTU 5 seqs prokMSA_id:18690 AF243175.1 Lactobacillus crispatus str. TL39b prokMSA_id:21096 AF257096.1 Lactobacillus crispatus str. ATCC33197 prokMSA_id:40830 AF243170.1 Lactobacillus crispatus str. TL13 prokMSA_id:42454 AF243174.1 Lactobacillus crispatus str. TL35 prokMSA_id:49001 AF243150.1 Lactobacillus crispatus str. KC12b 2.21.2.3.4.1.3479 OTU 1 seq prokMSA_id:74053 AB048833.1 Lactobacillus equi str. YIT 0455 2.21.2.3.4.1.3490 OTU 15 seqs prokMSA_id:41700 AF243141.1 Lactobacillus crispatus str. BLB2 prokMSA_id:47365 AF243160.1 Lactobacillus sp. str. KC38 prokMSA_id:47438 AY029223.1 Lactobacillus sp. str. Y10 prokMSA_id:48213 AF371472.1 phylotype OTU-171 swine intestine clone p-3443-SwA2 prokMSA_id:61751 AJ417737.1 Lactobacillus gallinarum str. ATCC 33199 prokMSA_id:77358 AF215872.1 Lactobacillus sp. str. KC38 prokMSA_id:82427 AY080968.1 Lactobacillus cf. crispatus clone ck6 prokMSA_id:84798 AY253660.1 Lactobacillus ultunensis str. Kx146C1; LMG 22117T; DSM 16047T; CCUG 48460T prokMSA_id:89142 AY335494.1 Lactobacillus crispatus prokMSA_id:92041 AY349383.1 human oral cavity clone HT070 prokMSA_id:99069 AY445815.1 Lactobacillus suntoryeus str. SA prokMSA_id:100669 AY675251.1 Lactobacillus suntoryeus str. LH5 prokMSA_id:100987 AY644397.1 Lactobacillus suntoryeus str. M4 prokMSA_id:103954 AY763430.1 Lactobacillus acidophilus str. LH5 prokMSA_id:105631 AY675248.1 Lactobacillus suntoryeus str. LH 2.21.2.3.4.1.3493 OTU 1 seq prokMSA_id:15202 AF197125.1 Lactobacillus sp. str. C33LV5 2.21.2.3.4.1.3496 OTU 1 seq prokMSA_id:15206 AF049743.1 Lactobacillus sp. str. LMG 17676 2.21.2.3.4.1.3510 OTU 1 seq prokMSA_id:26722 AF371494.1 phylotype OTU-271 swine intestine clone p-2960-9F2 2.21.2.3.4.1.3513 OTU 1 seq prokMSA_id:15229 D87679.1 Pediococcus dextrinicus str. JCM5887 2.21.2.3.4.1.3521 OTU 4 seqs prokMSA_id:15153 D88528.1 Pediococcus parvulus str. JCM5889 prokMSA_id:19307 AJ271383.1 Pediococcus inopinatus str. DSM 20285 prokMSA_id:39325 AJ318414.1 Pediococcus damnosus str. DSM 20331 prokMSA_id:51901 AF371489.1 phylotype OTU-290 swine intestine clone p-2997-9F2 2.21.2.3.4.1.3523 OTU 1 seq prokMSA_id:15230 AF049745.2 Paralactobacillus selangorensis str. LMG 17710 2.21.2.3.4.1.3526 OTU 12 seqs prokMSA_id:15236 D16553.1 Lactobacillus casei subsp. fusiformis str. JCM 1177 prokMSA_id:27633 AF401673.1 Lactobacillus sakei prokMSA_id:33531 AY038636.1 lacustrine subsurface sediment clone GL184.23 prokMSA_id:35674 AY038634.1 lacustrine subsurface sediment clone GL182.39 prokMSA_id:52229 AY038637.1 lacustrine subsurface sediment clone GL178.12 prokMSA_id:81067 AY204895.1 Lactobacillus sakei str. HNMRS2c prokMSA_id:81933 AY204889.1 Lactobacillus sakei carnosus subsp. melibiosus str. CCUG 34545 prokMSA_id:81991 AY204892.1 Lactobacillus sakei subsp. carnosus str. CCUG 31331 subsp. prokMSA_id:82221 AY204893.1 Lactobacillus sakei subsp. sakei prokMSA_id:82312 AY204896.1 Lactobacillus sakei str. HNSL5a prokMSA_id:103607 AB124845.1 Lactobacillus sakei str. HS-1 prokMSA_id:104152 AB183697.1 Lactobacillus sakei 2.21.2.3.4.1.3547 OTU 4 seqs prokMSA_id:16684 AF243154.1 Lactobacillus vaginalis str. KC19 prokMSA_id:21772 AF243177.1 Lactobacillus vaginalis str. ATCC49540 prokMSA_id:35658 AJ250074.1 Lactobacillus frumenti str. TMW 1.666 prokMSA_id:49202 AF371484.1 phylotype OTU-47 swine intestine clone p-3301-23G2 2.21.2.3.4.1.3566 OTU 8 seqs prokMSA_id:15142 X76329.1 Lactobacillus pontis prokMSA_id:15148 X94230.1 Lactobacillus panis prokMSA_id:15150 X94229.1 Lactobacillus oris prokMSA_id:22238 AF371485.1 phylotype OTU-341 swine intestine clone p-3979-6Wa2 prokMSA_id:49835 AF371487.1 phylotype OTU-301 swine intestine clone p-3083-SwA-3 prokMSA_id:76876 AJ422032.1 Lactobacillus pontis str. LMG 14187 T (= R-14655) prokMSA_id:77216 AJ422033.1 Lactobacillus pontis str. LMG 14188 prokMSA_id:85511 AY253659.1 Lactobacillus antri str. Kx146A4; LMG 22111T; DSM 16041T; CCUG 48456T 2.21.2.3.4.1.3587 OTU 1 seq prokMSA_id:49102 AB063479.1 Lactobacillus fuchuensis str. JCM 11249 2.21.2.3.4.1.3590 OTU 1 seq prokMSA_id:39949 AF413523.1 Lactobacillus pantheris 2.21.2.3.4.1.3593 OTU 1 seq prokMSA_id:36943 AB033209.1 Lactobacillus algidus str. JCM 10491 2.21.2.3.4.1.3596 OTU 1 seq prokMSA_id:15125 Y17361.1 Lactobacillus amylolyticus str. LA 5 2.21.2.3.4.1.3599 OTU 1 seq prokMSA_id:15128 AJ242968.1 Lactobacillus gallinarum str. ATCC 33199 2.21.2.3.4.1.3600 OTU 1 seq prokMSA_id:15129 AJ242969.1 Lactobacillus crispatus str. NCTC 4 2.21.2.3.4.1.3604 OTU 20 seqs prokMSA_id:15132 M99704.1 Lactobacillus acidophilus prokMSA_id:15135 AJ002515.1 Lactobacillus johnsonii str. ATCC 33200 (T) prokMSA_id:16314 AF243144.1 Lactobacillus gasseri str. BLB1b prokMSA_id:16504 AF243165.1 Lactobacillus gasseri str. KC5a prokMSA_id:17132 AF371476.1 phylotype OTU-170 swine intestine clone p-136-a2 prokMSA_id:18662 AF371478.1 phylotype OTU-170 swine intestine clone p-2315-962-2 prokMSA_id:22892 AF243151.1 Lactobacillus gasseri str. KC36a prokMSA_id:28241 AF371479.1 phylotype OTU-170 swine intestine clone p-2865-6C5 prokMSA_id:35597 AF243142.1 Lactobacillus gasseri str. BLB3 prokMSA_id:39384 AF243173.1 Lactobacillus gasseri str. TL33a prokMSA_id:48509 AF243157.1 Lactobacillus gasseri str. KC29 prokMSA_id:50521 AF243156.1 Lactobacillus gasseri str. KC26 prokMSA_id:66613 AY094066.1 Lactobacillus sp. str. IDSAc prokMSA_id:70466 AF371477.1 phylotype OTU-170 swine intestine clone p-13-a5 prokMSA_id:74642 AF519171.1 Lactobacillus gasseri str. ATCC 33323 prokMSA_id:105432 AE017201.1 Lactobacillus johnsonii prophage Lj965 str. NCC 533 prokMSA_id:106048 AE017205.1 Lactobacillus johnsonii str. NCC 533 prokMSA_id:106194 AE017206.1 Lactobacillus johnsonii str. NCC 533 prokMSA_id:108679 NC_005362.1 Lactobacillus johnsonii NCC 533 prokMSA_id:111685 AY862434.1 Lactobacillus sp. str. ID9203 2.21.2.3.4.1.3611 OTU 1 seq prokMSA_id:15133 Y16329.1 Lactobacillus sp. str. CCUG 28746 2.21.2.3.4.1.3618 OTU 8 seqs prokMSA_id:18763 AF243162.1 Lactobacillus jensenii str. KC44 prokMSA_id:27140 AF243161.1 Lactobacillus jensenii str. KC39 prokMSA_id:31979 AF243143.1 Lactobacillus jensenii str. BLB1a prokMSA_id:35518 AF243159.1 Lactobacillus jensenii str. KC36b prokMSA_id:38470 AF243176.1 Lactobacillus jensenii str. ATCC25258 prokMSA_id:47914 AF243155.1 Lactobacillus jensenii str. KC23 prokMSA_id:51715 AF243153.1 Lactobacillus jensenii str. KC13 prokMSA_id:77350 AF215880.1 Lactobacillus jensenii 2.21.2.3.4.1.3632 OTU 1 seq prokMSA_id:35081 AF371503.1 phylotype OTU-208 swine intestine clone p-2594-9F5 2.21.2.3.4.1.3634 OTU 1 seq prokMSA_id:56512 AJ417738.1 Lactobacillus letivazi str. JCL3994 2.21.2.3.4.1.3652 OTU 7 seqs prokMSA_id:40447 AF317703.1 Lactobacillus thermotolerans str. G 43 prokMSA_id:40831 AF317704.1 Lactobacillus thermotolerans str. G 44 prokMSA_id:44614 AF317702.1 Lactobacillus thermotolerans str. G 35 prokMSA_id:52162 AF333975.1 Lactobacillus ingluviei str. KR3 prokMSA_id:52562 AF308147.1 Lactobacillus thermotolerans str. G22 prokMSA_id:72717 AF308146.1 Lactobacillus thermotolerans str. G 12 prokMSA_id:107193 AY445123.1 Lactobacillus sp. str. RA2053 2.21.2.3.4.1.3660 OTU 1 seq prokMSA_id:15222 AJ132757.1 Lactobacillus sp. LM-17 2.21.2.3.4.1.3663 OTU 4 seqs prokMSA_id:15191 X95421.1 Lactobacillus lindneri str. DSM 20690 prokMSA_id:15192 X95422.1 Lactobacillus lindneri str. L2 prokMSA_id:15193 X95423.1 Lactobacillus lindneri str. LTH 2505 prokMSA_id:15194 D37784.1 Lactobacillus lindneri DA1 2.21.2.3.4.1.3665 OTU 3 seqs prokMSA_id:15196 AB016864.1 Lactobacillus sp prokMSA_id:38501 Y17500.1 Lactobacillus nagelii str. LuE10 prokMSA_id:106519 AB162131.1 Lactobacillus nagelii str. NRIC 0559 2.21.2.3.4.1.3669 OTU 2 seqs prokMSA_id:15211 AF000162.1 Lactobacillus manihotivorans str. OND 32; LMG 18010T prokMSA_id:15212 AF000163.1 Lactobacillus manihotivorans str. YAM I; LMG 18011 2.21.2.3.4.1.3678 OTU 1 seq prokMSA_id:22336 Y18654.1 Lactobacillus fornicalis str. TV1018 2.21.2.3.4.1.3696 OTU 1 seq prokMSA_id:84126 AY253657.1 Lactobacillus kalixensis str. Kx127A2; LMG 22115T; DSM 16043T; CCUG 48459T 2.21.2.3.4.1.3703 OTU 14 seqs prokMSA_id:15205 AF089108.1 Lactobacillus subsp. salivarius str. ATCC 11741 prokMSA_id:22623 AF201900.1 Chicken intestinal isolate str. MRS 4.5 prokMSA_id:33452 AF335475.1 Lactobacillus subsp. salivarius prokMSA_id:35499 AF420311.1 Lactobacillus salivarius prokMSA_id:48374 AF371497.1 phylotype OTU-364 swine intestine clone p-4323-4Wa3 prokMSA_id:62010 AY137589.1 Lactobacillus salivarius subsp. salicinius str. JCM 1230 subsp. prokMSA_id:62011 AY137587.1 Lactobacillus salivarius subsp. salicinius str. JCM 1046 subsp. prokMSA_id:62012 AY137588.1 Lactobacillus salivarius subsp. salicinius str. JCM 1047 subsp. prokMSA_id:62013 AY137585.1 Lactobacillus salivarius subsp. salicinius str. JCM 1044 prokMSA_id:62014 AY137584.1 Lactobacillus salivarius subsp. salicinius str. JCM 1042 prokMSA_id:62015 AY137586.1 Lactobacillus salivarius subsp. salicinius str. JCM 1045 prokMSA_id:64741 AY112743.1 Lactobacillus subsp. salivarius str. KLB39 subsp. prokMSA_id:95759 AY389803.1 Lactobacillus salivarius str. RA2115 prokMSA_id:96905 AY389802.1 Lactobacillus salivarius str. RA2116 2.21.2.3.4.1.3740 OTU 1 seq prokMSA_id:50977 AF316585.1 Lactobacillus sp. str. YE06 2.21.2.3.4.1.3759 OTU 1 seq prokMSA_id:16292 AJ400259.1 intestine clone S24-8 2.21.2.3.4.1.3767 OTU 2 seqs prokMSA_id:74107 AJ315640.1 Lactobacillus durianis str. LMG 19193 prokMSA_id:88564 AJ575744.1 Lactobacillus suebicus str. CECT 5917T 2.21.2.3.4.1.3768 OTU 1 seq prokMSA_id:15232 Y19167.1 Lactobacillus perolens str. L532 2.21.2.3.4.1.3795 OTU 1 seq prokMSA_id:23628 AJ408207.1 equine large intestine clone MW20 2.21.2.3.4.1.3798 OTU 19 seqs prokMSA_id:15139 M58819.1 Lactobacillus fermentum prokMSA_id:15140 U62624.1 Lactobacillus fermentum str. KRM prokMSA_id:21805 AF243149.1 Lactobacillus fermentum str. F53 prokMSA_id:41377 AF243166.1 Lactobacillus fermentum str. KC5b prokMSA_id:44080 AF477499.1 Lactobacillus fermentum str. PL9006 prokMSA_id:52471 AF302116.1 Lactobacillus fermentum str. KLD prokMSA_id:67806 AF349935.1 Lactobacillus sp. str. CR-6AS prokMSA_id:67816 AF349926.1 derived cheese sample clone 60CR prokMSA_id:71186 AF522394.1 Lactobacillus fermentum str. KLB12 prokMSA_id:88448 AJ575812.1 Lactobacillus fermentum prokMSA_id:91530 AY332396.2 Lactobacillus sp. rennanqilyf4 prokMSA_id:95034 AY373589.1 Lactobacillus fermentum str. MD-9 prokMSA_id:96956 AJ508720.1 Lactobacillus fermentum str. F53 prokMSA_id:107854 AY773954.1 Lactobacillus paracasei 4C prokMSA_id:107871 CQ890344.1 Lactobacillus fermentum prokMSA_id:112981 AY929282.1 Lactobacillus fermentum str. BFE 6658 prokMSA_id:113053 AY929281.1 Lactobacillus fermentum str. BFE 6628 prokMSA_id:113236 AY929279.1 Lactobacillus fermentum str. BFE 6618 prokMSA_id:113560 AY929280.1 Lactobacillus fermentum str. BFE 6620 2.21.2.3.4.1.3808 OTU 55 seqs prokMSA_id:15159 D79211.1 Lactobacillus pentosus prokMSA_id:15160 D79213.1 Lactobacillus sp. prokMSA_id:15161 D79210.1 Lactobacillus plantarum prokMSA_id:15163 M58827.1 Lactobacillus plantarum prokMSA_id:17624 AF320256.1 Lactobacillus plantarum prokMSA_id:19229 AF323677.1 Lactobacillus plantarum prokMSA_id:20723 AF382389.1 Lactobacillus plantarum str. C5 prokMSA_id:26342 AF382390.1 Lactobacillus plantarum str. 0B8 prokMSA_id:31888 AJ306297.1 Lactobacillus paraplantarum str. DSM 10667T prokMSA_id:33677 AF095564.1 Lactobacillus plantarum prokMSA_id:46388 AB070610.1 Lactobacillus sp. str. B5407 prokMSA_id:62378 AF404710.1 Lactobacillus plantarum str. ATCC 14917 prokMSA_id:64381 AF515222.1 Lactobacillus plantarum str. RO7 prokMSA_id:64526 AF516755.1 Lactobacillus sp. str. MR-2 prokMSA_id:64527 AF516754.1 Lactobacillus sp. str. MR-1 prokMSA_id:67804 AF349936.1 Lactobacillus sp. str. CR-7AS prokMSA_id:73661 AJ271852.1 Lactobacillus plantarum str. UK782 traditional fermented milk prokMSA_id:73879 AJ272031.1 Lactobacillus plantarum str. HSW36 prokMSA_id:79835 AL935253.1 Lactobacillus plantarum str. WCFS1 prokMSA_id:80353 NC_004567.1 Lactobacillus plantarum WCFS1 prokMSA_id:80366 AL935261.1 Lactobacillus plantarum str. WCFS1 prokMSA_id:80507 AL935258.1 Lactobacillus plantarum str. WCFS1 prokMSA_id:80613 AL935255.1 Lactobacillus plantarum str. WCFS1 prokMSA_id:80844 AL935260.1 Lactobacillus plantarum str. WCFS1 prokMSA_id:83239 AY230220.1 Lactobacillus plantarum str. H prokMSA_id:83673 AY244626.1 Lactobacillus plantarum str. BJ G26-1 prokMSA_id:83774 AY230225.1 Lactobacillus plantarum str. H8 prokMSA_id:83806 AY244634.1 Lactobacillus plantarum str. BJ G9-3 prokMSA_id:84089 AB104855.1 Lactobacillus plantarum str. Chikuso-1 prokMSA_id:84280 AY230227.1 Lactobacillus plantarum str. K14 prokMSA_id:84302 AY244631.1 Lactobacillus plantarum str. BJ G29-1 prokMSA_id:84560 AY230221.1 Lactobacillus plantarum str. H19 prokMSA_id:84583 AY244637.1 Lactobacillus plantarum str. BJ G14-5 prokMSA_id:84594 AY244633.1 Lactobacillus plantarum str. BJ G26-4 prokMSA_id:84617 AY230223.1 Lactobacillus plantarum str. H4 prokMSA_id:85070 AY244627.1 Lactobacillus plantarum str. BJ G32-1 prokMSA_id:85716 AY244630.1 Lactobacillus plantarum str. BJ G31-1 prokMSA_id:86180 AY230224.1 Lactobacillus plantarum str. H5 prokMSA_id:86228 AY244638.1 Lactobacillus pentosus str. BJ G9-1 prokMSA_id:88391 AB112083.1 Lactobacillus plantarum str. L137 prokMSA_id:92163 AY341560.1 Lactobacillus plantarum str. BJ4-1 prokMSA_id:92227 AY341559.1 Lactobacillus plantarum str. BJ6-2 prokMSA_id:92312 AY341544.1 Lactobacillus plantarum str. BJ20-1 prokMSA_id:92364 AY341557.1 Lactobacillus plantarum str. BJ32-1 prokMSA_id:92442 AY341552.1 Lactobacillus plantarum str. BJ31-1S prokMSA_id:92674 AY341551.1 Lactobacillus plantarum str. BJ16-28 prokMSA_id:93128 AY341546.1 Lactobacillus plantarum str. BJ26-2 prokMSA_id:95489 AY383631.1 Lactobacillus plantarum str. MiLAB14 prokMSA_id:101484 AY675256.1 Lactobacillus plantarum str. LP3 prokMSA_id:103995 AB183696.1 Lactobacillus plantarum str. HOKKAIDO prokMSA_id:107631 AB191250.1 Lactobacillus paraplantarum str. II 32 prokMSA_id:108108 AY735404.1 Lactobacillus plantarum str. LP1 prokMSA_id:108112 AY735405.1 Lactobacillus paracasei str. LPC4 prokMSA_id:108246 AY735409.1 Lactobacillus plantarum str. LP2 prokMSA_id:111985 AJ878739.1 Lactobacillus paraplantarum str. TKR17B 2.21.2.3.4.1.3809 OTU 17 seqs prokMSA_id:15119 AB007908.1 Lactobacillus delbrueckii subsp. bulgaricus str. JCM 1002 prokMSA_id:15120 M58814.1 Lactobacillus delbrueckii prokMSA_id:15124 M58823.1 Lactobacillus lactis prokMSA_id:19801 AF371474.1 phylotype OTU-172 swine intestine clone p-2370-55G5 prokMSA_id:24230 AY050172.1 Lactobacillus subsp. delbrueckii str. ATCC 9649 subsp. prokMSA_id:55673 AF349925.1 derived cheese sample clone 54CR prokMSA_id:67815 AF349923.1 cheese clone 45CR prokMSA_id:67818 AF349922.1 derived cheese sample clone 51CR prokMSA_id:67822 AF349919.1 derived cheese sample clone 37CR prokMSA_id:70954 AY050171.1 Lactobacillus delbrueckii subsp. bulgaricus prokMSA_id:73747 AY050173.1 Lactobacillus delbrueckii subsp. lactis str. ATCC 12315 subsp. prokMSA_id:95745 AY421720.1 Lactobacillus delbrueckii subsp. indicus str. NCC725 prokMSA_id:101649 AY675257.1 Lactobacillus delbrueckii subsp. bulgaricus str. LGM2 prokMSA_id:107848 AY773949.1 Lactobacillus subsp. delbrueckii str. BCRC12195 prokMSA_id:107850 AY773950.1 Lactobacillus delbrueckii subsp. lactis str. BCRC11051 prokMSA_id:108136 AY735407.1 Lactobacillus delbrueckii subsp. bulgaricus str. LG1 prokMSA_id:112321 AB200872.1 Lactobacillus delbrueckii subsp. bulgaricus str. DL2 2.21.2.3.4.1.3810 OTU 10 seqs prokMSA_id:15170 M58810.1 Lactobacillus brevis prokMSA_id:15171 AB024299.1 Lactobacillus brevis str. NRIC 1684 prokMSA_id:15172 AF090328.1 Lactobacillus brevis str. K9 prokMSA_id:15173 D37785.1 Lactobacillus brevis L63 prokMSA_id:16554 AB070606.1 Lactobacillus brevis str. B4101 prokMSA_id:17965 AB070611.1 Lactobacillus brevis str. B5501 prokMSA_id:40052 AB070608.1 Lactobacillus brevis str. B5401 prokMSA_id:48588 AB070607.1 Lactobacillus brevis str. B5201 prokMSA_id:64387 AF515220.1 Lactobacillus brevis str. RO66 prokMSA_id:64389 AF515219.1 Lactobacillus brevis str. RO97 2.21.2.3.4.1.3813 OTU 1 seq prokMSA_id:24271 AF371491.1 phylotype OTU-185 swine intestine clone p-2626-9F5 2.21.2.3.4.1.3821 OTU 60 seqs prokMSA_id:15213 M58815.1 Lactobacillus casei prokMSA_id:15214 D16552.1 Lactobacillus casei subsp. rhamnosus str. JCM 1136 prokMSA_id:15215 D16551.1 Lactobacillus subsp. casei str. JCM 1134 prokMSA_id:15216 D86518.1 Lactobacillus casei str. JCM 8129 (=NCDO 173) prokMSA_id:15218 M23928.1 Lactobacillus casei prokMSA_id:15219 D86516.1 Lactobacillus zeae str. ATCC15820 prokMSA_id:15221 D79212.1 Lactobacillus paracasei prokMSA_id:15223 D16548.1 Lactobacillus casei subsp. alactosus str. JCM 1133 prokMSA_id:15224 D16549.1 Lactobacillus casei subsp. pseudoplantarum str. JCM 1181 prokMSA_id:15225 D16550.1 Lactobacillus casei subsp. tolerans str. JCM 1171 prokMSA_id:19371 AB070609.1 Lactobacillus sp. str. B5406 prokMSA_id:20863 AF243147.1 Lactobacillus subsp. paracasei str. F31 prokMSA_id:21135 AF306539.1 Lactobacillus sp. str. P8 prokMSA_id:27334 AF385770.1 Lactobacillus casei str. BL23 prokMSA_id:33166 AJ272201.1 Lactobacillus subsp. casei str. UK 318 fermented milk prokMSA_id:46704 D86517.1 Lactobacillus casei str. ATCC334 prokMSA_id:48136 AF243146.1 Lactobacillus rhamnosus str. F11 prokMSA_id:48159 AF320255.1 Lactobacillus casei prokMSA_id:50029 AF243168.1 Lactobacillus subsp. paracasei str. KLB58 prokMSA_id:56018 AF349937.1 Lactobacillus sp. str. CR-609S prokMSA_id:66614 AY094065.1 Lactobacillus sp. str. IDLAc prokMSA_id:67359 AY091596.1 Lactobacillus casei str. KH-1 prokMSA_id:77419 AF215881.1 Lactobacillus sp. str. F11 prokMSA_id:77533 AF526388.1 Lactobacillus casei str. HSM 357872 prokMSA_id:79380 AF469172.1 Lactobacillus casei str. ATCC 393 prokMSA_id:83495 AJ558112.1 Lactobacillus casei str. CWBI-B623 prokMSA_id:87604 AY299488.1 Lactobacillus rhamnosus str. MCRF-412 prokMSA_id:87656 AY299486.1 Lactobacillus rhamnosus prokMSA_id:87913 AY299487.1 Lactobacillus casei str. MCRF-284 prokMSA_id:91774 AY332395.2 Lactobacillus sp. rennanqilyf7 prokMSA_id:93227 AY363384.2 Lactobacillus sp. str. rennanqilfy16 prokMSA_id:93234 AY363373.2 Lactobacillus sp. str. rennanqilfy15 prokMSA_id:93435 AY369076.1 Lactobacillus subsp. paracasei Akira1 prokMSA_id:93488 AY339128.2 Lactobacillus sp. str. rennanqilyf5 prokMSA_id:93510 AY363372.2 Lactobacillus sp. str. rennanqilfy14 prokMSA_id:93775 AY363371.2 Lactobacillus sp. str. rennanqilfy11 prokMSA_id:93837 AY363376.1 Lactobacillus sp. str. rennanqilfy10 prokMSA_id:93982 AY363374.2 Lactobacillus sp. str. rennanqilfy2 prokMSA_id:94117 AY363378.2 Lactobacillus sp. str. rennanqilfy20 prokMSA_id:100824 AY675252.1 Lactobacillus casei str. LC3 prokMSA_id:100985 AY675253.1 Lactobacillus rhamnosus str. LR3 prokMSA_id:101151 AY675254.1 Lactobacillus rhamnosus str. LR2 prokMSA_id:101305 AY675255.1 Lactobacillus paracasei str. LPC1 prokMSA_id:102058 AY370679.1 Lactobacillus rhamnosus str. B5269/99 prokMSA_id:103815 AB181950.1 Lactobacillus paracasei subsp. tolerans str. NBRC 15906 prokMSA_id:105660 AY370680.1 Lactobacillus rhamnosus str. LCG SHARDINGER prokMSA_id:105814 AY370681.1 Lactobacillus rhamnosus str. SPAR CREME YOGHOURT LEICHT prokMSA_id:105965 AY370682.1 Lactobacillus rhamnosus str. GG ATCC 53103 prokMSA_id:106116 AB126872.1 Lactobacillus subsp. paracasei str. A221(LPH) prokMSA_id:107851 AY773951.1 Lactobacillus subsp. paracasei str. BCRC12193 prokMSA_id:107852 AY773952.1 Lactobacillus paracasei 2C prokMSA_id:107853 AY773953.1 Lactobacillus paracasei 3C prokMSA_id:107855 AY773955.1 Lactobacillus paracasei 9C prokMSA_id:107860 AY773957.1 Lactobacillus rhamnosus 5D prokMSA_id:108735 AY773946.1 Lactobacillus sp. str. BCRC16000 prokMSA_id:108736 AY773945.1 Lactobacillus casei str. BCRC10697 prokMSA_id:109725 AJ441105.1 Lactobacillus paracasei str. SM20 prokMSA_id:109839 AJ441107.1 Lactobacillus paracasei str. SM63 prokMSA_id:110589 AY852248.1 Lactobacillus rhamnosus str. P15 prokMSA_id:111049 AJ441106.1 Lactobacillus paracasei str. SM29 2.21.2.3.4.1.3829 OTU 5 seqs prokMSA_id:24802 AF183558.1 Lactobacillus kimchii str. AP1077 prokMSA_id:70330 AJ417500.1 Lactobacillus paralimentarius str. DSM 13238 prokMSA_id:76191 AJ422035.1 Lactobacillus paralimentarius str. ACA-DC 3413 (= R-13312) prokMSA_id:76249 AJ422036.1 Lactobacillus paralimentarius str. ACA-DC 3415 (= R-13314) prokMSA_id:76371 AJ422034.1 Lactobacillus paralimentarius str. ACA-DC 3363 (= R-13310) 2.21.2.3.4.1.3834 OTU 7 seqs prokMSA_id:15141 AF197126.1 Lactobacillus sp. str. G24 prokMSA_id:15146 AF126738.1 Lactobacillus mucosae str. CCUG 43179 (T); S32; DSM 13345 prokMSA_id:18857 AF243145.1 Lactobacillus mucosae str. BLB1c prokMSA_id:41977 AB034098.1 rumen clone 3C3d-12 prokMSA_id:47403 AF243148.1 Lactobacillus mucosae str. F52 prokMSA_id:48564 AF371488.1 phylotype OTU-174 swine intestine clone p-1883-s962-3 prokMSA_id:77529 AF215871.1 Lactobacillus sp. str. BLB1c 2.21.2.3.4.1.3839 OTU 3 seqs prokMSA_id:70438 AJ271854.1 Lactobacillus subsp. paracasei str. UK179 traditional fermented milk prokMSA_id:75967 AJ422039.1 Lactobacillus sp. str. ACA-DC 3411t1 (= R-13317) ACA-DC prokMSA_id:85541 AY241664.1 Lactobacillus hilgardii str. IOEB0204 2.21.2.3.4.1.3842 OTU 3 seqs prokMSA_id:15233 Y19168.1 Lactobacillus perolens str. L534 prokMSA_id:15234 AB005739.1 Lactobacillus sp. str. LA-6 prokMSA_id:36168 E17066.1 Lactobacillus sp 2.21.2.3.4.1.3874 OTU 1 seq prokMSA_id:27815 AB018212.1 Pediococcus acidilactici str. E 7 2.21.2.3.4.1.3880 OTU 2 seqs prokMSA_id:26176 AF408267.1 Lactobacillus sp. clone KL-11-1-6 prokMSA_id:74576 AF408266.1 Lactobacillus sp. clone KL-111-2-6 2.21.2.3.4.1.3885 OTU 12 seqs prokMSA_id:15151 M58834.1 Pediococcus pentosaceus prokMSA_id:15152 AB018215.1 Pediococcus pentosaceus str. LS 5 prokMSA_id:15156 AB018213.1 Pediococcus acidilactici str. LA 3 prokMSA_id:15157 AB018214.1 Pediococcus acidilactici str. LA 35 prokMSA_id:38120 AJ305321.1 Pediococcus pentosaceus str. DSM 20336 (T) prokMSA_id:40870 AJ305322.1 Pediococcus acidilactici str. B1104 Blood isolate prokMSA_id:44357 AJ305320.1 Pediococcus acidilactici str. DSM 20284 (T) prokMSA_id:56137 AF515227.1 Pediococcus pentosaceus str. RO95 prokMSA_id:56475 AF515229.1 Pediococcus acidilactici str. RO17 prokMSA_id:66561 AJ487026.1 intestine Zophobas mori clone prokMSA_id:66562 AJ487025.1 intestine Zophobas mori clone prokMSA_id:67805 AF349938.1 Pediococcus sp. str. CR-6S 2.21.2.3.4.1.3887 OTU 1 seq prokMSA_id:23477 AJ292530.2 Lactobacillus coleohominis 2.21.2.3.4.1.3889 OTU 1 seq prokMSA_id:72207 AF316588.1 Lactobacillus sp. str. YE10 2.21.2.3.4.1.3890 OTU 3 seqs prokMSA_id:15176 X76331.1 Lactobacillus sanfrancisco prokMSA_id:15189 X76327.1 Lactobacillus sanfrancisco prokMSA_id:76839 AJ422037.1 Lactobacillus sanfranciscensis str. C57 (= R-15351) 2.21.2.3.4.1.3908 OTU 2 seqs prokMSA_id:72216 AF316586.1 Lactobacillus sp. str. YE07 prokMSA_id:89972 AJ576008.1 Lactobacillus sp. str. CECT 5923 2.21.2.3.4.1.3912 OTU 1 seq prokMSA_id:38908 AF371492.1 phylotype OTU-285 swine intestine clone p-2945-9F2 2.21.2.3.4.1.3914 OTU 2 seqs prokMSA_id:18965 AJ251560.1 Lactobacillus cypricasei str. LMK3 prokMSA_id:28727 AF305930.1 Lactobacillus sp. str. 121B 2.21.2.3.4.1.3919 OTU 1 seq prokMSA_id:27265 AF371495.1 phylotype OTU-302 swine intestine clone p-2988-9F2 2.21.2.3.4.1.3924 OTU 1 seq prokMSA_id:15179 Y11374.1 Lactobacillus kunkeei str. YH-15 2.21.2.3.5 Leuconostocaceae 59 seqs 2.21.2.3.5.1 sf_1 59 seqs 2.21.2.3.5.1.3286 OTU 4 seqs prokMSA_id:15087 M23040.1 Weissella viridescens prokMSA_id:15094 M23039.1 Weissella minor prokMSA_id:30631 AB022920.1 Weissella minor str. NRIC 1625 prokMSA_id:33970 AB023236.1 Weissella viridescens str. NRIC 1536 2.21.2.3.5.1.3293 OTU 2 seqs prokMSA_id:15093 M23038.1 Weissella kandleri prokMSA_id:43687 AB022922.1 Weissella kandleri str. NRIC 1628 2.21.2.3.5.1.3311 OTU 37 seqs prokMSA_id:15100 M23035.1 Leuconostoc mesenteroides prokMSA_id:15102 AF175402.1 Leuconostoc gelidum str. DSM5578 prokMSA_id:15103 AB023242.1 Leuconostoc subsp. mesenteroides str. NCFB 523 prokMSA_id:15104 AB023243.1 Leuconostoc subsp. mesenteroides str. NRIC 1541 prokMSA_id:15105 AB004661.1 Leuconostoc gelidum str. JCM10093 prokMSA_id:15106 X95978.1 Leuconostoc mesenteroides prokMSA_id:15107 M23034.1 Leuconostoc mesenteroides prokMSA_id:15110 AF111948.1 Leuconostoc citreum prokMSA_id:15111 AF111949.1 Leuconostoc citreum str. IH22; KCTC0542BP prokMSA_id:15112 AF195784.1 Leuconostoc citreum str. 22R; CNRZ1478 prokMSA_id:15116 AB023968.1 Leuconostoc lactis str. JCM 6123 prokMSA_id:15117 AF175403.1 Leuconostoc argentinum str. DSM8581 prokMSA_id:24274 AF231131.1 Leuconostoc gasicomitatum str. LMG 18811 prokMSA_id:24435 AB023237.1 Leuconostoc pseudomesenteroides str. NRIC 1777 prokMSA_id:24935 AB022921.1 Leuconostoc gelidum str. NRIC 1778 prokMSA_id:28880 AF231132.1 Leuconostoc gasicomitatum str. LMG 18812 prokMSA_id:32872 AF173986.1 Leuconostoc kimchii prokMSA_id:33805 AB023246.1 Leuconostoc mesenteroides subsp. dextranicum str. NRIC 1539 prokMSA_id:33861 AB023245.1 Leuconostoc mesenteroides subsp. cremoris str. NRIC 1538 prokMSA_id:41680 AF468002.1 Leuconostoc pseudomesenteroides str. CHCC2114 prokMSA_id:44146 AB022923.1 Leuconostoc citreum str. NRIC 1776 prokMSA_id:45789 AB023247.1 Leuconostoc mesenteroides subsp. cremoris str. NCFB 543 prokMSA_id:50225 AB023244.1 Leuconostoc mesenteroides subsp. dextranicum str. NCFB 529 prokMSA_id:64385 AF515228.1 Leuconostoc pseudomesenteroides str. RO1 prokMSA_id:64684 AY117686.1 Leuconostoc inhae str. IH611 3 prokMSA_id:64685 AY117685.1 Leuconostoc inhae str. IH515 2 prokMSA_id:64686 AY117684.1 Leuconostoc inhae str. IH101 1 prokMSA_id:65411 AF439560.1 Leuconostoc inhae str. IH003 prokMSA_id:67685 AF360737.1 Leuconostoc fructosum str. DSM 20349 prokMSA_id:67809 AF349931.1 Leuconostoc sp. str. CR-310S prokMSA_id:75964 AY165007.1 Leuconostoc citreum str. CY2 prokMSA_id:84812 AY264850.1 Leuconostoc mesenteroides str. KNUC03 prokMSA_id:98624 AY186084.1 ferromanganese deposit clone LB1C2 prokMSA_id:104149 AY456086.1 Leuconostoc garlicum new species prokMSA_id:105017 AY675244.1 Leuconostoc inhae str. LM2630 prokMSA_id:105786 AY675249.1 Leuconostoc mesenteroides str. LM2 prokMSA_id:112814 AY929289.1 Leuconostoc pseudomesenteroides str. BFE 6644 2.21.2.3.5.1.3485 OTU 1 seq prokMSA_id:48808 AY040669.1 Weissella hanii str. IH1012 2.21.2.3.5.1.3497 OTU 2 seqs prokMSA_id:63449 AY035892.1 Weissella koreensis S-5673 prokMSA_id:63450 AY035891.1 Weissella koreensis S-5623 2.21.2.3.5.1.3512 OTU 7 seqs prokMSA_id:20679 AB054805.1 Oenococcus oeni str. 95 St.CS-5-1 prokMSA_id:20790 AB022924.1 Oenococcus oeni prokMSA_id:24042 AB054807.1 Oenococcus oeni str. 95 ASH-5-C-1 prokMSA_id:32963 AB054804.1 Oenococcus oeni str. 95 MBA-6--1 prokMSA_id:43771 AB054803.1 Oenococcus oeni str. 94 CS-3-4 prokMSA_id:43827 AB054806.1 Oenococcus oeni str. 95 St.Mer-2-4 prokMSA_id:44642 AB054808.1 Oenococcus oeni str. 95 St.Mer-8-1 2.21.2.3.5.1.3573 OTU 1 seq prokMSA_id:67688 AF360736.1 Leuconostoc ficulneum str. FS-1 2.21.2.3.5.1.3601 OTU 3 seqs prokMSA_id:16498 AF218797.1 Leuconostoc fallax str. 17D (CNRZ2049) prokMSA_id:52511 AB023239.1 Leuconostoc fallax str. NRIC 0210 prokMSA_id:67686 AF360738.1 Leuconostoc fallax str. DSM 20189 2.21.2.3.5.1.3801 OTU 1 seq prokMSA_id:73154 AY028260.1 Weissella soli str. Mi268; LMG 20113; DSM 14420 2.21.2.3.5.1.3850 OTU 1 seq prokMSA_id:45087 AB022926.1 Weissella halotolerans str. NRIC 1627 2.21.2.3.6 Streptococcaceae 431 seqs 2.21.2.3.6.1 sf_1 431 seqs 2.21.2.3.6.1.3250 OTU 13 seqs prokMSA_id:15478 M58835.1 Streptococcus bovis str.ATCC 33317 prokMSA_id:15484 AF177729.1 Streptococcus infantarius str. HDP90104; SLB prokMSA_id:15485 AB002481.1 Streptococcus bovis str.ATCC 27960 prokMSA_id:15486 AB002514.1 Streptococcus equinus str. NCTC 9814 prokMSA_id:24015 AF429762.1 Streptococcus subsp. infantarius str. HDP90056T; NCDO599T subsp. prokMSA_id:25587 AF135453.1 Streptococcus bovis str. 1276 prokMSA_id:30971 AJ297214.1 Streptococcus luteciae str. NEM 760 prokMSA_id:36122 AJ305257.1 Streptococcus bovis str. NCTC11436 prokMSA_id:36638 AF298199.1 Streptococcus sp. str. LRC 0476 prokMSA_id:38058 AF429763.1 Streptococcus lutetiensis subsp. coli str. HDP90246; NCDO964 prokMSA_id:39742 AF396920.1 Streptococcus bovis str. B315 prokMSA_id:51368 AJ301607.1 Streptococcus equinus str. ATCC 9812 prokMSA_id:71159 AF429765.1 Streptococcus equinus str. NCDO1037T; ATCC9812 2.21.2.3.6.1.3251 OTU 7 seqs prokMSA_id:15567 AB008313.1 Streptococcus cristatus str. NCTC12479 prokMSA_id:53864 AY005047.1 Streptococcus sp. oral strain str. B5SC prokMSA_id:66308 AY099095.1 Streptococcus oligofermentans str. 2-4T prokMSA_id:80267 AY188347.1 Streptococcus cristatus str. ATCC 51100 prokMSA_id:99648 AY584476.1 Streptococcus cristatus str. ATCC 51100 prokMSA_id:108737 AJ853835.1 Streptococcus cristatus str. PD01A5 prokMSA_id:108738 AJ853836.1 Streptococcus cristatus str. 0109 93830B 2.21.2.3.6.1.3253 OTU 1 seq prokMSA_id:67823 AF349918.1 derived cheese sample clone 32CR 2.21.2.3.6.1.3287 OTU 1 seq prokMSA_id:47073 AF432137.1 tongue dorsum scrapings clone FP015 2.21.2.3.6.1.3290 OTU 74 seqs prokMSA_id:15551 AB008315.1 Streptococcus infantis str. GTC849 prokMSA_id:15552 D38482.1 Streptococcus mitis prokMSA_id:15554 AF003932.1 Streptococcus oralis str. ATCC 35037 prokMSA_id:15568 AF003929.1 Streptococcus mitis str. ATCC 49456 prokMSA_id:15572 AF003930.1 Streptococcus pneumoniae str. ATCC 33400 prokMSA_id:15573 AB002522.1 Streptococcus pneumoniae str. MAFF 911410 prokMSA_id:18951 AE008552.1 Streptococcus pneumoniae str. R6 prokMSA_id:26554 AF479579.1 Streptococcus sp. str. NJ9704 prokMSA_id:26707 AF316591.1 Streptococcus sp. str. 2061A prokMSA_id:27308 AY005046.1 subgingival dental plaque clone AA007 prokMSA_id:28885 AY005040.1 Streptococcus sp. oral strain str. 7A prokMSA_id:36398 AY005044.1 subgingival dental plaque clone CH016 prokMSA_id:37656 AF479580.1 Streptococcus mitis str. NJ9705 prokMSA_id:39626 AF316595.1 Streptococcus sp. str. 3170A prokMSA_id:41742 AJ295848.1 Streptococcus mitis str. 127R prokMSA_id:41889 AF316594.1 Streptococcus sp. str. 3097C prokMSA_id:42006 AB038371.1 Streptococcus sp. str. PSH2 prokMSA_id:45312 AE008386.1 Streptococcus pneumoniae str. R6 prokMSA_id:46365 AJ295853.1 Streptococcus mitis str. 209 prokMSA_id:47428 AE008546.1 Streptococcus pneumoniae str. R6 prokMSA_id:48329 AE008537.1 Streptococcus pneumoniae str. R6 prokMSA_id:52668 NC_003098.1 Streptococcus pneumoniae R6 prokMSA_id:53325 NC_003028.1 Streptococcus pneumoniae TIGR4 prokMSA_id:58287 AF543291.1 Streptococcus mitis str. ChDC OS41 prokMSA_id:59561 AY134908.1 Streptococcus sp. oral strain str. 12F prokMSA_id:59566 AY134901.1 Streptococcus sp. oral clone FX003 prokMSA_id:69773 AY005042.1 subgingival dental plaque clone BW009 prokMSA_id:70487 AF316592.1 Streptococcus sp. str. 4093B prokMSA_id:70803 AF432132.1 tongue dorsum scrapings clone DP009 prokMSA_id:70877 AF432131.1 tongue dorsum scrapings clone DN025 prokMSA_id:71055 AY005043.1 subgingival dental plaque clone BM035 prokMSA_id:71395 AF385574.1 purified crevicular epithelial cells clone EK048 oral prokMSA_id:71752 AY005045.1 Streptococcus mitis bv2 str. SK34 prokMSA_id:72273 AF316593.1 Streptococcus sp. str. 2056B prokMSA_id:72990 AF385526.1 Streptococcus sp. oral strain str. T4-E3 prokMSA_id:73251 AY005041.1 Streptococcus sp. oral strain str. H6 prokMSA_id:73545 AF385525.1 Streptococcus sp. oral strain str. T1-E5 prokMSA_id:73592 AF385523.1 Streptococcus sp. oral strain str. H3-M2 prokMSA_id:81302 AY216449.1 temperate estuarine mud clone KM46 prokMSA_id:82688 AY207064.1 human mouth clone P4PA_30 prokMSA_id:83689 AY207062.1 human mouth clone P4PA_13 prokMSA_id:84858 AY207051.1 human mouth clone P2PA_41 prokMSA_id:86104 AY256519.1 formalin fixed embedded archival prosthetic cardiac valve tissue case fulminant endocarditis clone sp. prokMSA_id:86805 AY278632.1 Streptococcus genomosp. C4 prokMSA_id:87053 AY278609.1 Streptococcus genomosp. C8 prokMSA_id:88146 AY281077.1 Streptococcus mitis str. ATCC 6249 prokMSA_id:88205 AY281076.1 Streptococcus mitis str. ATCC 15914 prokMSA_id:88323 AY281086.1 Streptococcus sanguinis str. ATCC 49296 prokMSA_id:88494 AY281084.1 Streptococcus pneumoniae str. ATCC 6303 prokMSA_id:88719 AY281082.1 Streptococcus pneumoniae str. ATCC 49619 prokMSA_id:89429 AY281081.1 Streptococcus pneumoniae str. ATCC 700669 prokMSA_id:89930 AY281079.1 Streptococcus oralis str. ATCC 9811 prokMSA_id:90116 AY281080.1 Streptococcus oralis str. ATCC 700233 prokMSA_id:90432 AY281085.1 Streptococcus sanguinis str. ATCC 29667 prokMSA_id:90442 AY281083.1 Streptococcus pneumoniae str. ATCC BAA-334 prokMSA_id:94837 AJ583201.1 ground water monitoring deep-well at radioactive waste disposal site clone S15B-MN30 prokMSA_id:100642 AJ617796.1 Hu-o8 prokMSA_id:101588 AY485601.1 Streptococcus mitis str. ATCC 49456; GCSS 1303 prokMSA_id:101685 AY518677.1 Streptococcus mitis str. Sm91 prokMSA_id:101765 AY485602.1 Streptococcus oralis str. ATCC 35037 prokMSA_id:105608 AJ617805.1 Streptococcus mitis str. B6 prokMSA_id:106495 AY612844.1 Streptococcus pseudopneumoniae str. ATCC BAA-960; gc297-03; CDC ss1757 prokMSA_id:106609 AY485599.1 Streptococcus pseudopneumoniae str. ATCC BAA-891; 253-03 prokMSA_id:107158 AJ608938.1 Streptococcus pneumoniae str. 101 prokMSA_id:107858 AY485600.1 Streptococcus pneumoniae prokMSA_id:111444 AY525790.1 Streptococcus pneumoniae str. HK_P55 prokMSA_id:111686 AY880051.1 Streptococcus sp. S16-11 prokMSA_id:111752 AY525793.1 Streptococcus pneumoniae str. SI_P25 prokMSA_id:111799 AY525794.1 Streptococcus pneumoniae str. VN_O27 prokMSA_id:111812 AY525792.1 Streptococcus pneumoniae str. SI_P7 prokMSA_id:112132 AY880050.1 Streptococcus sp. S16-08 prokMSA_id:112257 AY525788.1 Streptococcus pneumoniae str. Kor 145 prokMSA_id:112307 AY525795.1 Streptococcus pneumoniae str. Mal_O1 prokMSA_id:112327 AY525789.1 Streptococcus pneumoniae str. HK_P47 2.21.2.3.6.1.3305 OTU 1 seq prokMSA_id:26896 Y17358.1 Streptococcus ovis str. S369-98-1 2.21.2.3.6.1.3313 OTU 8 seqs prokMSA_id:15459 M58839.1 Streptococcus salivarius prokMSA_id:23153 AF408260.1 Streptococcus sp. clone KL-48-1-4 prokMSA_id:31326 AF408263.1 Streptococcus sp. clone KL-27-1-5 prokMSA_id:41340 AF408258.1 Streptococcus sp. clone KL-86-2-9 prokMSA_id:56634 AF459433.1 Streptococcus salivarius prokMSA_id:80065 AY188353.1 Streptococcus vestibularis str. ATCC 49124 prokMSA_id:80129 AY188352.1 Streptococcus salivarius str. ATCC 7073 prokMSA_id:80926 AY188354.1 Streptococcus thermophilus 2.21.2.3.6.1.3340 OTU 1 seq prokMSA_id:15509 Z94010.1 clone T46 2.21.2.3.6.1.3357 OTU 4 seqs prokMSA_id:15365 X89967.1 Streptococcus parauberis prokMSA_id:36800 AF284579.2 Streptococcus parauberis str. SAP 99 prokMSA_id:75302 AY167955.1 manure prokMSA_id:76372 AY167959.1 manure 2.21.2.3.6.1.3380 OTU 2 seqs prokMSA_id:27408 AJ420199.1 Streptococcus macacae str. NCTC11558 prokMSA_id:80258 AY188351.1 Streptococcus macacae str. ATCC 35911 2.21.2.3.6.1.3389 OTU 1 seq prokMSA_id:43122 AJ420198.1 Streptococcus criceti str. ATCC19642 2.21.2.3.6.1.3397 OTU 5 seqs prokMSA_id:15436 Z94012.1 Streptococcus macedonicus prokMSA_id:15446 AF088900.1 Streptococcus macedonicus str. 3/1; NZRCC 20100 prokMSA_id:42690 AF298197.1 Streptococcus sp. str. LRC 0253 prokMSA_id:46517 AF298198.1 Streptococcus sp. str. LRC 0255 prokMSA_id:58771 AF459431.1 Streptococcus macedonicus 2.21.2.3.6.1.3422 OTU 6 seqs prokMSA_id:15434 X68418.1 Streptococcus thermophilus prokMSA_id:42918 AF408257.1 Streptococcus sp. clone KL-94-1-12 prokMSA_id:67808 AF349932.1 Streptococcus sp. str. CR-314S prokMSA_id:69863 AF349920.1 derived cheese sample clone 39CR prokMSA_id:70173 AF202012.1 cultivated isolate prokMSA_id:106862 AY138233.1 human stomach biopsy clone Sto1-3 2.21.2.3.6.1.3436 OTU 12 seqs prokMSA_id:15348 AB012306.1 Lactococcus garvieae str. JCM 8735 prokMSA_id:19276 AF352164.1 Lactococcus garvieae str. FLG4 prokMSA_id:28491 AF352163.1 Lactococcus garvieae str. FLG2 prokMSA_id:31382 AF352166.1 Lactococcus garvieae str. FLG12 prokMSA_id:36458 AF061005.1 Lactococcus garvieae str. ATCC49156 prokMSA_id:39953 AB026843.1 Lactococcus garvieae str. ATCC49156 prokMSA_id:44780 AB079369.1 Enterococcus sp. str. U1-1 prokMSA_id:45250 AF283499.1 Lactococcus garvieae prokMSA_id:45788 AB079371.1 Enterococcus sp. str. U5-1 prokMSA_id:48070 AF352165.1 Lactococcus garvieae str. FLG5 prokMSA_id:102785 AY699289.1 Lactococcus garvieae M79 prokMSA_id:111012 AY669388.1 Lactococcus garvieae 15G 2.21.2.3.6.1.3446 OTU 5 seqs prokMSA_id:15510 Z94011.1 activated sludge clone T44 prokMSA_id:35624 AF284578.2 Streptococcus suis str. SAP 77 prokMSA_id:36287 AF429766.1 Streptococcus bovis str. NCDO2127 prokMSA_id:51661 AF290487.1 cf. Streptococcus suis clone Welshpool 44 prokMSA_id:78372 AY173079.1 Streptococcus bovis str. HJ50 2.21.2.3.6.1.3462 OTU 1 seq prokMSA_id:22640 AF124350.1 Streptococcus orisratti str. ATCC700640; A63 2.21.2.3.6.1.3499 OTU 24 seqs prokMSA_id:15500 AF104672.1 Streptococcus intermedius str. 125 prokMSA_id:15501 AF104673.1 Streptococcus intermedius str. 488 prokMSA_id:15502 AF104674.1 Streptococcus intermedius str. 535 prokMSA_id:15503 AF104675.1 Streptococcus intermedius str. 539 prokMSA_id:15504 AF104676.1 Streptococcus constellatus str. ATCC27823 prokMSA_id:15505 AF104677.1 Streptococcus constellatus str. 206 prokMSA_id:15569 AF003928.1 Streptococcus sanguinis str. ATCC 10556 prokMSA_id:38234 AB002524.1 Streptococcus sanguinis prokMSA_id:58288 AF543290.1 Streptococcus sanguinis str. ChDC OS38 prokMSA_id:58297 AF543281.1 Streptococcus sanguinis str. ChDC B203 prokMSA_id:87435 AY277939.1 Streptococcus constellatus str. 15 prokMSA_id:87453 AY277941.1 Streptococcus constellatus str. 919 prokMSA_id:87466 AY277940.1 Streptococcus constellatus str. 1192 prokMSA_id:87550 AY277938.1 Streptococcus constellatus str. 857 prokMSA_id:87569 AY277942.1 Streptococcus constellatus str. 1259 prokMSA_id:87920 AY277937.1 Streptococcus constellatus str. 1 prokMSA_id:94436 AJ583202.1 ground water monitoring deep-well at radioactive waste disposal site clone S15B-MN51 prokMSA_id:102076 AY485604.1 Streptococcus australis str. ATCC 700641 prokMSA_id:102723 AY309095.1 Streptococcus constellatus subsp. pharyngis str. MM9889a prokMSA_id:103148 AY691542.1 Streptococcus sanguinis str. ChDC YSA1 prokMSA_id:109345 AY838460.1 fruiting body Pleurotus eryngii clone PE04 prokMSA_id:109350 AY838465.1 fruiting body Pleurotus eryngii clone PE09 prokMSA_id:109352 AY838467.1 fruiting body Pleurotus eryngii clone PE11 prokMSA_id:109360 AY838475.1 fruiting body Pleurotus eryngii clone PE19 2.21.2.3.6.1.3507 OTU 5 seqs prokMSA_id:28805 AJ420196.1 Streptococcus ferus str. HD3 prokMSA_id:35033 AY058218.1 Streptococcus ferus str. LMG16520T prokMSA_id:37236 AF336367.1 Streptococcus ferus str. KOMA81 prokMSA_id:39498 AJ420197.1 Streptococcus ferus str. 8S1 prokMSA_id:100119 AY584479.1 Streptococcus ferus str. ATCC 33477 2.21.2.3.6.1.3533 OTU 1 seq prokMSA_id:22071 AJ131965.1 Streptococcus sp. str. 2285-97 2.21.2.3.6.1.3543 OTU 1 seq prokMSA_id:15451 Y10868.1 Streptococcus gallolyticus str. ACM3969 2.21.2.3.6.1.3558 OTU 1 seq prokMSA_id:78223 AB089061.2 termite gut homogenate clone Rs-B70 2.21.2.3.6.1.3560 OTU 1 seq prokMSA_id:63461 AJ307888.1 Streptococcus gallinaceus str. CCUG 42692 2.21.2.3.6.1.3576 OTU 9 seqs prokMSA_id:15357 AF176101.1 Streptococcus didelphis str. W95-108899 (177) prokMSA_id:15358 AF176102.1 Streptococcus didelphis str. W95-018899 (131) prokMSA_id:15359 AF176103.1 Streptococcus didelphis str. W94-11374-1 prokMSA_id:15360 AF176104.1 Streptococcus didelphis str. W94-12010 prokMSA_id:15361 AF176105.1 Streptococcus didelphis str. 95-111064 prokMSA_id:15362 AF176106.1 Streptococcus didelphis str. W95-2085-1 prokMSA_id:15363 AF176107.1 Streptococcus didelphis str. 95-3349-1 prokMSA_id:15364 AF176108.1 Streptococcus didelphis str. W95-3565-7 prokMSA_id:15386 AF176100.1 Streptococcus didelphis str. W95-4849 2.21.2.3.6.1.3588 OTU 2 seqs prokMSA_id:72603 AJ420200.1 Streptococcus downei str. NCTC11391 prokMSA_id:80847 AY188350.1 Streptococcus downei str. ATCC 33748 2.21.2.3.6.1.3616 OTU 1 seq prokMSA_id:15354 AB002515.1 Streptococcus equi subsp. equi 2.21.2.3.6.1.3629 OTU 26 seqs prokMSA_id:15565 AJ243965.1 Streptococcus mutans str. NCTC 10449 prokMSA_id:51371 AF202013.1 cultivated isolate prokMSA_id:55433 AF139600.1 Streptococcus mutans str. UA96 prokMSA_id:57764 AE015023.1 Streptococcus mutans str. UA159 prokMSA_id:57765 AE015006.1 Streptococcus mutans str. UA159 prokMSA_id:57766 AE015003.1 Streptococcus mutans str. UA159 prokMSA_id:57767 AE014869.1 Streptococcus mutans str. UA159 prokMSA_id:57768 AE014854.1 Streptococcus mutans str. UA159 prokMSA_id:69287 AF139599.1 Streptococcus mutans str. UA140 prokMSA_id:69297 AF139602.1 Streptococcus mutans str. AF199 prokMSA_id:72123 AF139603.1 Streptococcus mutans str. 669 prokMSA_id:72641 AF139601.1 Streptococcus mutans str. LM7 prokMSA_id:80416 AY188348.1 Streptococcus mutans str. ATCC 25175 prokMSA_id:81367 AF077832.1 Streptococcus mutans str. LM7 prokMSA_id:81591 AF077835.1 Streptococcus mutans str. UA96 prokMSA_id:81886 AF077833.1 Streptococcus mutans str. AF199 prokMSA_id:82180 AF077834.1 Streptococcus mutans str. 669 prokMSA_id:82224 AF077836.1 Streptococcus mutans str. UA140 prokMSA_id:102441 AY691525.1 Streptococcus mutans str. ChDC YM2 prokMSA_id:102599 AY691526.1 Streptococcus mutans str. ChDC YM3 prokMSA_id:102759 AY691527.1 Streptococcus mutans str. ChDC YM9 prokMSA_id:102907 AY691528.1 Streptococcus mutans str. ChDC YM71 prokMSA_id:103051 AY691529.1 Streptococcus mutans str. ChDC YM83 prokMSA_id:106688 AY691530.1 Streptococcus mutans str. ChDC YM86 prokMSA_id:106842 AY691531.1 Streptococcus mutans str. ChDC YM88 prokMSA_id:106988 AY691532.1 Streptococcus mutans str. ChDC YM97 2.21.2.3.6.1.3637 OTU 1 seq prokMSA_id:70091 AF227836.1 environmental isolate 37236 2.21.2.3.6.1.3685 OTU 6 seqs prokMSA_id:15563 AF003931.1 Streptococcus gordonii str. ATCC 10558 prokMSA_id:15576 AB002520.1 Streptococcus mitis str. NCTC 3165 MAFF 911479 prokMSA_id:36023 AJ427479.1 Streptococcus gordonii str. DL1 prokMSA_id:50550 AF385545.1 purified crevicular epithelial cells clone AY020 oral prokMSA_id:58289 AF543289.1 Streptococcus sp. str. ChDC OS37 prokMSA_id:62977 AF526931.1 Mars Odyssey Orbiter and encapsulation facility clone T10-23 sp. 2.21.2.3.6.1.3699 OTU 17 seqs prokMSA_id:15372 AB002479.1 Streptococcus agalactiae prokMSA_id:15373 AF015927.1 Streptococcus agalactiae str. ATCC 27956 prokMSA_id:15374 AB023574.1 Streptococcus agalactiae str. JCM 5671 prokMSA_id:15382 AB002523.1 Streptococcus porcinus str. ATCC 43138 NCTC 10999 prokMSA_id:15383 AB002480.1 Streptococcus agalactiae str. ATCC 23956 prokMSA_id:15425 X59032.1 Streptococcus agalactiae prokMSA_id:55265 AE014192.1 Streptococcus agalactiae str. 2603V/R prokMSA_id:55977 AE014195.1 Streptococcus agalactiae str. 2603V/R prokMSA_id:57716 NC_004368.1 Streptococcus agalactiae NEM316 prokMSA_id:58770 AF459432.1 Streptococcus agalactiae prokMSA_id:59530 NC_004116.1 Streptococcus agalactiae 2603V/R prokMSA_id:59711 AE014210.1 Streptococcus agalactiae str. 2603V/R prokMSA_id:59712 AE014207.1 Streptococcus agalactiae str. 2603V/R prokMSA_id:59713 AE014202.1 Streptococcus agalactiae str. 2603V/R prokMSA_id:59714 AE014198.1 Streptococcus agalactiae str. 2603V/R prokMSA_id:59717 AE014191.1 Streptococcus agalactiae str. 2603V/R prokMSA_id:107431 AB112407.1 Streptococcus difficilis str. GTC 730 (T) =ATCC 51487 2.21.2.3.6.1.3709 OTU 1 seq prokMSA_id:15540 AF009508.1 Streptococcus suis str. EA1832.92 2.21.2.3.6.1.3722 OTU 43 seqs prokMSA_id:15343 X64887.1 Lactococcus lactis prokMSA_id:15345 M58836.1 Lactococcus lactis prokMSA_id:30402 AF408259.1 Lactococcus sp. clone KL-86-2-7 prokMSA_id:54615 NC_002662.1 Lactococcus lactis subsp. lactis Il1403 prokMSA_id:58588 AB083092.1 Lactococcus subsp. lactis K231 prokMSA_id:64379 AF515224.1 Lactococcus subsp. lactis str. RO6 prokMSA_id:64380 AF515226.1 Lactococcus subsp. lactis str. RO37 prokMSA_id:64382 AF515225.1 Lactococcus subsp. lactis str. RO3 prokMSA_id:66046 AJ488176.1 Lactococcus lactis str. 04 prokMSA_id:66047 AJ488175.1 Lactococcus lactis str. MRS5 prokMSA_id:66048 AJ488174.1 Lactococcus lactis str. MRS2 prokMSA_id:66049 AJ488173.1 Lactococcus lactis str. MRS1 prokMSA_id:66568 AJ487019.1 intestine Zophobas mori clone prokMSA_id:69977 AJ271851.1 Lactococcus subsp. lactis str. UK1560 traditional fermented milk prokMSA_id:75483 AY167937.1 manure prokMSA_id:75681 AY167948.1 manure prokMSA_id:82870 AB100796.1 Lactococcus subsp. lactis str. NIRD 712 prokMSA_id:83001 AB100803.1 Lactococcus subsp. lactis str. NCDO 604T prokMSA_id:83027 AB100797.1 Lactococcus subsp. lactis str. NIAI SLN prokMSA_id:83318 AB100800.1 Lactococcus bv. diacetylactis subsp. lactis str. NIRD DRC-1 subsp. prokMSA_id:83325 AB100801.1 Lactococcus bv. diacetylactis subsp. lactis str. NIRD DRC-2 subsp. prokMSA_id:83390 AB100792.1 Lactococcus lactis subsp. cremoris str. NIAI H-61 subsp. prokMSA_id:83439 AF493058.1 Lactococcus subsp. lactis prokMSA_id:83464 AB100794.1 Lactococcus lactis subsp. cremoris str. NIRD 924 subsp. prokMSA_id:84466 AB100802.1 Lactococcus lactis subsp. cremoris prokMSA_id:84491 AB100799.1 Lactococcus bv. diacetylactis subsp. lactis str. NIAI N-7 subsp. prokMSA_id:84539 AB100804.1 Lactococcus lactis subsp. hordniae str. NCDO 2181T subsp. prokMSA_id:84578 AB100805.1 Lactococcus bv. diacetylactis subsp. lactis str. ATCC 13675 subsp. prokMSA_id:84723 AB100791.1 Lactococcus lactis subsp. cremoris str. NIRD Ho-6 subsp. prokMSA_id:85252 AB100795.1 Lactococcus subsp. lactis str. NIAI 527 prokMSA_id:85709 AB100798.1 Lactococcus subsp. lactis str. NIRD SC-10 prokMSA_id:85961 AB100793.1 Lactococcus lactis subsp. cremoris str. NIRD HC-1 subsp. prokMSA_id:86118 AF493057.1 Lactococcus subsp. lactis prokMSA_id:86637 AY231304.1 wastewater clone ER1_4 prokMSA_id:89935 AY328550.1 drinking water system simulator clone HOClCi1 prokMSA_id:92114 AB118033.1 Lactococcus subsp. lactis str. K335 prokMSA_id:104570 AY675241.1 Lactococcus lactis str. SL1 prokMSA_id:104720 AY675242.1 Lactococcus lactis str. SL3 prokMSA_id:105941 AB181302.1 Lactococcus lactis subsp. cremoris str. CF4 prokMSA_id:106096 AY533297.1 Lactococcus lactis str. milk prokMSA_id:106261 AY533298.1 Lactococcus lactis subsp. cremoris str. milk prokMSA_id:108033 AB178485.1 Lactococcus lactis prokMSA_id:113317 AY789461.1 Lactococcus lactis str. ZFX-2 2.21.2.3.6.1.3741 OTU 3 seqs prokMSA_id:15444 AJ243966.1 Streptococcus sobrinus str. NCTC 12279 prokMSA_id:70509 AF439398.2 Streptococcus sobrinus str. 6715 prokMSA_id:80496 AY188349.1 Streptococcus sobrinus 2.21.2.3.6.1.3753 OTU 52 seqs prokMSA_id:15508 AF009477.1 Streptococcus suis str. NCTC10234 prokMSA_id:15511 AF009475.1 Streptococcus suis str. 5428 prokMSA_id:15512 AF009478.1 Streptococcus suis str. 4961 prokMSA_id:15513 AF009479.1 Streptococcus suis str. 6407 prokMSA_id:15514 AF009483.1 Streptococcus suis str. 14636 prokMSA_id:15515 AF009484.1 Streptococcus suis str. 22083 prokMSA_id:15516 AF009485.1 Streptococcus suis str. 4417 prokMSA_id:15517 AF009486.1 Streptococcus suis str. 12814 prokMSA_id:15518 AF009487.1 Streptococcus suis str. 88308 prokMSA_id:15519 AF009489.1 Streptococcus suis str. 13730 prokMSA_id:15520 AF009490.1 Streptococcus suis str. NCTC1046 prokMSA_id:15521 AF009491.1 Streptococcus suis str. 2726 prokMSA_id:15522 AF009492.1 Streptococcus suis str. 93A prokMSA_id:15523 AF009493.1 Streptococcus suis str. NT77 prokMSA_id:15524 AF009494.1 Streptococcus suis str. 42A prokMSA_id:15525 AF009496.1 Streptococcus suis str. 14A prokMSA_id:15529 AF009498.1 Streptococcus suis str. 89-2479 prokMSA_id:15530 AF009499.1 Streptococcus suis str. 88-5299A prokMSA_id:15531 AF009500.1 Streptococcus suis str. 89-3576 prokMSA_id:15532 AF009502.1 Streptococcus suis str. 89-5259 prokMSA_id:15533 AF009503.1 Streptococcus suis str. 89-590 prokMSA_id:15534 AF009504.1 Streptococcus suis str. 92-1191 prokMSA_id:15535 AF009506.1 Streptococcus suis str. 92-4172 prokMSA_id:15536 AF014817.1 Streptococcus suis str. 88-5299A prokMSA_id:15537 AF014818.1 Streptococcus suis str. 89-3576-3 prokMSA_id:15539 AF014820.1 Streptococcus suis str. 89-5259 prokMSA_id:15541 AB002525.1 Streptococcus suis prokMSA_id:15542 AF009480.1 Streptococcus suis str. 11538 prokMSA_id:15543 AF009481.1 Streptococcus suis str. 2524 prokMSA_id:15544 AF009488.1 Streptococcus suis str. 10581 prokMSA_id:15547 AF009505.1 Streptococcus suis str. 92-1400 prokMSA_id:18069 AB071344.1 Streptococcus suis str. 211 prokMSA_id:19499 AB071346.1 Streptococcus suis str. 222 prokMSA_id:20126 AF009482.1 Streptococcus suis prokMSA_id:20455 AB071345.1 Streptococcus suis str. 220 prokMSA_id:23271 AB071341.1 Streptococcus suis str. 203 prokMSA_id:24173 AB071339.1 Streptococcus suis str. 193 prokMSA_id:27714 AB071349.1 Streptococcus suis str. 235 prokMSA_id:29146 AB071347.1 Streptococcus suis str. 226 prokMSA_id:29179 AB071350.1 Streptococcus suis str. 243 prokMSA_id:29248 AF009497.1 Streptococcus suis str. 88-1861 prokMSA_id:31821 AF371511.1 phylotype OTU-374 swine intestine clone p-4747-2Wb2 prokMSA_id:33693 AB071342.1 Streptococcus suis str. 209 prokMSA_id:34124 AB071348.1 Streptococcus suis str. 228 prokMSA_id:34509 AB071340.1 Streptococcus suis str. 194 prokMSA_id:36314 AB071338.1 Streptococcus suis str. NIAH11318 prokMSA_id:46648 AB071343.1 Streptococcus suis str. 210 prokMSA_id:49657 AB071337.1 Streptococcus suis str. DAT2 prokMSA_id:51021 AF009476.1 Streptococcus suis str. 2651 prokMSA_id:51591 AB071336.1 Streptococcus suis str. DAT1 prokMSA_id:109958 AJ871187.1 Streptococcus sp. 253a prokMSA_id:110876 AJ871181.1 Streptococcus sp. 1040-02B 2.21.2.3.6.1.3774 OTU 1 seq prokMSA_id:15564 U87827.1 aortic heart valve patient with endocarditis clone v2 2.21.2.3.6.1.3786 OTU 12 seqs prokMSA_id:24233 AF433167.1 Streptococcus dysgalactiae str. HKU7 prokMSA_id:55142 AB096755.1 Streptococcus dysgalactiae subsp. equisimilis str. ATCC 35666 subsp. prokMSA_id:62942 AY121361.1 Streptococcus dysgalactiae subsp. equisimilis str. ATCC 12394 subsp. prokMSA_id:81034 AB104847.1 Streptococcus dysgalactiae subsp. equisimilis subsp. prokMSA_id:81224 AB104848.1 Streptococcus dysgalactiae subsp. equisimilis str. -ka subsp. prokMSA_id:81436 AB104844.1 Streptococcus dysgalactiae subsp. equisimilis str. N1434 subsp. prokMSA_id:81598 AB104840.1 Streptococcus dysgalactiae subsp. equisimilis str. 1149 subsp. prokMSA_id:81712 AB104849.1 Streptococcus dysgalactiae subsp. equisimilis str. -yo subsp. prokMSA_id:81812 AB104850.1 Streptococcus dysgalactiae subsp. equisimilis str. -sa subsp. prokMSA_id:82202 AB104839.1 Streptococcus dysgalactiae subsp. equisimilis str. BL2719 subsp. prokMSA_id:82226 AB104841.1 Streptococcus dysgalactiae subsp. equisimilis str. 1201 subsp. prokMSA_id:82327 AB104842.1 Streptococcus dysgalactiae subsp. equisimilis str. Fukuoka subsp. 2.21.2.3.6.1.3789 OTU 1 seq prokMSA_id:15430 Y07601.1 Streptococcus sp. str. SHV515 2.21.2.3.6.1.3796 OTU 1 seq prokMSA_id:15570 U87828.1 aortic heart valve patient with endocarditis clone v3 2.21.2.3.6.1.3800 OTU 1 seq prokMSA_id:15571 U87829.1 aortic heart valve patient with endocarditis clone v5 2.21.2.3.6.1.3815 OTU 12 seqs prokMSA_id:15384 AB002485.1 Streptococcus dysgalactiae str. ATCC 43078 prokMSA_id:15385 AF015928.1 Streptococcus dysgalactiae str. ATCC 27957 prokMSA_id:15388 AB002484.1 Streptococcus dysgalactiae str. ATCC 27957 prokMSA_id:15413 AB002510.1 Streptococcus dysgalactiae V24 prokMSA_id:15426 AB008926.1 Streptococcus dysgalactiae subsp. equisimilis str. NCFB1356 prokMSA_id:25514 AJ314611.1 Streptococcus dysgalactiae subsp. equisimilis prokMSA_id:48038 AJ314610.1 Streptococcus dysgalactiae subsp. equisimilis str. AC-2832 subsp. prokMSA_id:48544 AJ314609.1 Streptococcus dysgalactiae subsp. equisimilis str. AC-2713 subsp. prokMSA_id:55700 AJ319644.1 Streptococcus dysgalactiae subsp. equisimilis str. AC-4436 subsp. prokMSA_id:62943 AY121359.1 Streptococcus subsp. dysgalactiae str. ATCC 43078 subsp. prokMSA_id:66197 AJ319643.1 Streptococcus dysgalactiae subsp. equisimilis str. ATCC 35666 subsp. prokMSA_id:81796 AB104846.1 Streptococcus dysgalactiae subsp. equisimilis str. Ichi subsp. 2.21.2.3.6.1.3825 OTU 56 seqs prokMSA_id:15356 U41048.1 Streptococcus uberis prokMSA_id:15366 AB002527.1 Streptococcus uberis str. ATCC 27958 prokMSA_id:15367 AF009507.1 Streptococcus suis str. EA1172.91 prokMSA_id:15368 AF009509.1 Streptococcus suis str. 92-2742 prokMSA_id:15370 AB023575.1 Streptococcus pyogenes str. JCM 5674 prokMSA_id:15378 AB002526.1 Streptococcus uberis prokMSA_id:15419 AB002521.1 Streptococcus pyogenes prokMSA_id:15421 AB002483.1 Streptococcus canis str. ATCC 43498 DSM 20715 prokMSA_id:15422 AB002517.1 Streptococcus sp. 'group G' str. ATCC 27961 'group prokMSA_id:15428 AB002518.1 Streptococcus hyointestinalis str. ATCC 49169 DSM 20770 prokMSA_id:15439 AF084834.1 Streptococcus sp. str. KN3 prokMSA_id:15440 AF084836.1 Streptococcus sp. str. TW1 prokMSA_id:15443 Y10869.1 Streptococcus gallolyticus str. ACM3968 prokMSA_id:15445 AF157108.1 streptococcus clone R16-B35 prokMSA_id:15456 AB002519.1 Streptococcus alactolyticus str. ATCC 43492 prokMSA_id:15458 AB002482.1 Streptococcus bovis str.ATCC 33317 prokMSA_id:15461 X81023.1 "Streptococcus milleri" prokMSA_id:15464 AF145239.1 Streptococcus anginosus str. 367 prokMSA_id:15466 AF145241.1 Streptococcus anginosus str. 213 prokMSA_id:15467 AF145242.1 Streptococcus anginosus str. 21 prokMSA_id:15468 AF145243.1 Streptococcus anginosus str. 414 prokMSA_id:15469 AF145244.1 Streptococcus anginosus str. 1093 prokMSA_id:15471 AF145246.1 Streptococcus anginosus str. 920 prokMSA_id:15472 AB006119.1 Streptococcus anginosus str. GTC820 prokMSA_id:15473 AB006120.1 Streptococcus anginosus str. GTC821 prokMSA_id:15476 X78826.1 Streptococcus sp. prokMSA_id:15488 X78825.1 Streptococcus sp. prokMSA_id:15526 AF014814.1 Streptococcus suis str. St. 22083 prokMSA_id:15527 AF014815.1 Streptococcus suis str. 86-5192 prokMSA_id:15538 AF014819.1 Streptococcus suis str. 89-4109-1 prokMSA_id:15545 AF009495.1 Streptococcus suis str. 86-5192 prokMSA_id:15546 AF009501.1 Streptococcus suis str. 89-4109-1 prokMSA_id:15555 AF003933.1 Streptococcus parasanguinis str. ATCC 15912 prokMSA_id:15556 AB006125.1 Streptococcus parasanguinis str. GIFU8099 prokMSA_id:15557 AB006127.1 Streptococcus parasanguinis str. GIFU8496 prokMSA_id:17851 AY053482.1 gas hydrate clone AT425_EubB10 prokMSA_id:24384 AF371504.1 phylotype OTU-180 swine intestine clone p-4-a5 prokMSA_id:27019 AF221604.1 Streptococcus sp. ES11 prokMSA_id:28293 AF432135.1 tongue dorsum scrapings clone FN051 prokMSA_id:28686 AJ413204.1 Streptococcus canis str. CG5 prokMSA_id:29598 AF357560.1 mpn-isolate group 12 prokMSA_id:31706 AF323911.1 Streptococcus gallolyticus prokMSA_id:32537 AF432139.1 tongue dorsum scrapings clone FP064 prokMSA_id:40363 AF432134.1 tongue dorsum scrapings clone FN042 prokMSA_id:40770 AF201898.1 Streptococcus hyointestinalis str. ATCC 49169; DSM 20770 (T) prokMSA_id:41712 AF371505.1 phylotype OTU-180 swine intestine clone p-2-a5 prokMSA_id:42170 AF184974.1 Streptococcus australis str. AI1; ATCC 700641 prokMSA_id:45642 AE006496.1 Streptococcus pyogenes M1 GAS str. SF370 prokMSA_id:47988 AF371508.1 phylotype OTU-360 swine intestine clone p-4306-4Wa3 prokMSA_id:50372 AF371506.1 phylotype OTU-180 swine intestine clone p-29-a5 prokMSA_id:51275 AF385550.1 purified crevicular epithelial cells clone BE024 oral prokMSA_id:51786 AF201899.1 Streptococcus alactolyticus str. ATCC 43077; DSM 20728 (T) prokMSA_id:54235 AE006593.1 Streptococcus pyogenes M1 GAS str. SF370 prokMSA_id:59559 AY134909.1 Streptococcus sp. oral clone AG008 prokMSA_id:66577 AY098489.1 Streptococcus sp. AK68 prokMSA_id:84371 AY273147.1 Streptococcus pyogenes 2.21.2.3.6.1.3846 OTU 1 seq prokMSA_id:15355 AB002516.1 Streptococcus equi subsp. zooepidemicus 2.21.2.3.6.1.3863 OTU 1 seq prokMSA_id:15483 AF084832.1 Streptococcus sp. str. KN1 2.21.2.3.6.1.3869 OTU 3 seqs prokMSA_id:81475 AB104843.1 Streptococcus equi subsp. zooepidemicus str. Tokyo1291 subsp. prokMSA_id:105195 AJ605748.1 Streptococcus equi subsp. ruminatorum str. CECT 5772 prokMSA_id:105978 AJ715480.1 Streptococcus equi subsp. zooepidemicus 122 2.21.2.3.6.1.3906 OTU 5 seqs prokMSA_id:15437 AF104114.1 Streptococcus bovis str.ATCC 43143 prokMSA_id:19466 AF371507.1 phylotype OTU-358 swine intestine clone p-4289-4Wa3 prokMSA_id:29347 AJ297217.1 Streptococcus pasteuri str. NEM1205 CIP 105073 prokMSA_id:39559 AF357559.1 mpn-isolate group 11 prokMSA_id:44756 AJ297216.1 Streptococcus pasteuri str. NEM1202 CIP 105070 2.21.2.3.6.1.3907 OTU 1 seq prokMSA_id:15387 U87830.1 aortic heart valve patient with endocarditis clone v6 2.21.2.3.7 Unclassified 3 seqs 2.21.2.3.7.1 sf_1 3 seqs 2.21.2.3.7.1.3289 OTU 1 seq prokMSA_id:20210 AJ302648.1 Isobaculum melis CCUG 37660T 2.21.2.3.7.1.3434 OTU 1 seq prokMSA_id:78015 AB089063.1 termite gut homogenate clone Rs-C68 sp. 2.21.2.3.7.1.3481 OTU 1 seq prokMSA_id:71312 AF253361.1 intestine newborn human infant clone N108E 2.21.3 Catabacter 19 seqs 2.21.3.1 Unclassified 19 seqs 2.21.3.1.1 Unclassified 19 seqs 2.21.3.1.1.1 sf_1 2 seqs 2.21.3.1.1.1.4261 OTU 1 seq prokMSA_id:77977 AB089006.1 termite gut homogenate clone Rs-G04 bacterium 2.21.3.1.1.1.4293 OTU 1 seq prokMSA_id:78317 AB089008.1 termite gut homogenate clone Rs-Q01 bacterium 2.21.3.1.1.2 sf_4 17 seqs 2.21.3.1.1.2.2682 OTU 1 seq prokMSA_id:18245 AB062822.1 termite gut clone BCf4-09 2.21.3.1.1.2.2716 OTU 1 seq prokMSA_id:77959 AB089010.1 termite gut homogenate clone Rs-F76 bacterium 2.21.3.1.1.2.2880 OTU 1 seq prokMSA_id:72230 AF275916.1 anaerobic digester clone AA05 2.21.3.1.1.2.3014 OTU 1 seq prokMSA_id:14133 U81761.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinBB35 2.21.3.1.1.2.3023 OTU 1 seq prokMSA_id:83754 AY197417.1 Guaymas Basin hydrothermal vent sediments clone B04R016 2.21.3.1.1.2.3083 OTU 1 seq prokMSA_id:34789 AF371833.1 phylotype OTU-242 swine intestine clone p-2801-24E5 2.21.3.1.1.2.3241 OTU 1 seq prokMSA_id:50268 AF371945.1 phylotype OTU-391 swine intestine clone p-5324-2Wa3 2.21.3.1.1.2.4170 OTU 1 seq prokMSA_id:66191 AJ488074.1 chlorobenzene-degrading consortium clone IA-23 2.21.3.1.1.2.4319 OTU 2 seqs prokMSA_id:16272 AB009198.1 rumen clone RFN42 bacterium prokMSA_id:16273 AB009208.1 rumen clone RFN54 bacterium 2.21.3.1.1.2.4325 OTU 1 seq prokMSA_id:78194 AB088963.1 termite gut homogenate clone Rs-K21 bacterium 2.21.3.1.1.2.4351 OTU 1 seq prokMSA_id:51473 AB062807.1 termite gut homogenate clone BCf10-24 2.21.3.1.1.2.4392 OTU 1 seq prokMSA_id:16130 AF129867.1 anaerobic digestor clone HB69 2.21.3.1.1.2.4396 OTU 1 seq prokMSA_id:16131 AF129865.1 anaerobic digestor clone HA16 2.21.3.1.1.2.4503 OTU 1 seq prokMSA_id:78199 AB088976.1 termite gut homogenate clone Rs-H83 bacterium 2.21.3.1.1.2.4517 OTU 1 seq prokMSA_id:23003 AF371834.1 phylotype OTU-303 swine intestine clone p-2513-18B5 2.21.3.1.1.2.4526 OTU 1 seq prokMSA_id:59913 AY133082.1 TCE-contaminated site clone ccslm210 2.21.4 Clostridia 2076 seqs 2.21.4.1 Clostridiales 1971 seqs 2.21.4.1.1 Clostridiaceae 547 seqs 2.21.4.1.1.1 sf_12 542 seqs 2.21.4.1.1.1.10457 OTU 1 seq prokMSA_id:79565 AJ431218.1 strain isolate str. Dex60-82 2.21.4.1.1.1.123 OTU 2 seqs prokMSA_id:14250 L10086.1 "Eubacterium thermomarinus" prokMSA_id:106726 AJ272422.1 Caloranaerobacter azorensis MV1087 2.21.4.1.1.1.132 OTU 3 seqs prokMSA_id:77725 AB089019.1 termite gut homogenate clone Rs-J36 bacterium prokMSA_id:78152 AB089018.1 termite gut homogenate clone Rs-H17 bacterium prokMSA_id:78210 AB088985.1 termite gut homogenate clone Rs-K66 bacterium 2.21.4.1.1.1.206 OTU 1 seq prokMSA_id:78366 AB089017.1 termite gut homogenate clone Rs-P50 bacterium 2.21.4.1.1.1.252 OTU 3 seqs prokMSA_id:77865 AB089014.1 termite gut homogenate clone Rs-A28 bacterium prokMSA_id:77906 AB089013.2 termite gut homogenate clone Rs-D61 bacterium prokMSA_id:78141 AB089015.1 termite gut homogenate clone Rs-D04 bacterium 2.21.4.1.1.1.2657 OTU 1 seq prokMSA_id:71603 AJ271456.1 Clostridium alcaliphilum B8NS1- 2.21.4.1.1.1.2664 OTU 1 seq prokMSA_id:60608 AF407690.1 Great Artesian Basin clone R35 2.21.4.1.1.1.2677 OTU 1 seq prokMSA_id:38812 AJ400260.1 Large intestine clone L10-8 2.21.4.1.1.1.2678 OTU 1 seq prokMSA_id:71692 AF357570.1 mpn-isolate group 22 2.21.4.1.1.1.2687 OTU 2 seqs prokMSA_id:14103 AF116920.1 Clostridium xylanovorans str. HESP1; DSM 12503 prokMSA_id:84603 AY244954.1 cow rumen clone BE38 2.21.4.1.1.1.2689 OTU 1 seq prokMSA_id:25925 AB037677.1 Alkaliphilus transvaalensis str. SAGM1 2.21.4.1.1.1.2690 OTU 1 seq prokMSA_id:14105 X73436.1 Clostridium aminovalericum 2.21.4.1.1.1.2691 OTU 1 seq prokMSA_id:14106 X77841.1 Clostridium propionicum 2.21.4.1.1.1.2699 OTU 1 seq prokMSA_id:14107 AF152959.1 isolate snow obtained River Elbe clone Iso11_2 2.21.4.1.1.1.2707 OTU 1 seq prokMSA_id:14109 X76746.1 Clostridium neopropionicum 2.21.4.1.1.1.2725 OTU 2 seqs prokMSA_id:14180 X77845.1 Clostridium litorale prokMSA_id:19395 AF058004.1 PCB-dechlorinating enrichment 2.21.4.1.1.1.2736 OTU 1 seq prokMSA_id:58790 AY137848.1 Alkaliphils metalliredigenes 2.21.4.1.1.1.2750 OTU 1 seq prokMSA_id:42607 AB031327.1 Clostridium sp. str. NT-1 2.21.4.1.1.1.2757 OTU 2 seqs prokMSA_id:16757 AJ400255.2 Large intestine clone L10-3 prokMSA_id:18180 AJ308396.2 mouse gastrointestine clone C13-5 2.21.4.1.1.1.2759 OTU 4 seqs prokMSA_id:14174 Y15626.1 Tindallia magadiensis prokMSA_id:28874 AF373919.2 Tindallia californiensis str. APO prokMSA_id:40951 AJ271455.1 Clostridium aminovorans B7FT- prokMSA_id:51262 AJ271457.1 Clostridium bogorii B8NS1-C 2.21.4.1.1.1.2764 OTU 1 seq prokMSA_id:59830 AY133358.1 coastal Antarctic sediment clone OB3_52 2.21.4.1.1.1.2766 OTU 1 seq prokMSA_id:14108 AF157052.1 Clostridium sp. ASF356 str. ASF 356 2.21.4.1.1.1.2768 OTU 1 seq prokMSA_id:43181 Y16716.1 Natronincola histidinovorans 2.21.4.1.1.1.2775 OTU 1 seq prokMSA_id:14114 X76748.1 Clostridium colinum 2.21.4.1.1.1.2778 OTU 4 seqs prokMSA_id:14215 X73450.1 Clostridium difficile prokMSA_id:14216 AF072473.1 Clostridium difficile str. VPI 10463 prokMSA_id:14217 AF072474.1 Clostridium difficile str. 79685 prokMSA_id:70276 AB075770.1 Clostridium difficile str. ATCC 9689 2.21.4.1.1.1.2782 OTU 3 seqs prokMSA_id:33341 AF371595.1 phylotype OTU-89 swine intestine clone p-596-a5 prokMSA_id:38044 AJ408996.1 human colonic clone HuCB21 prokMSA_id:77315 AF349423.1 pig feces clone 2.21.4.1.1.1.2783 OTU 11 seqs prokMSA_id:19457 AB020806.1 Clostridium scindens str. JCM 10423 36S prokMSA_id:20145 Y18186.1 Clostridium scindens str. DSM 5676 prokMSA_id:23008 AB020731.1 Clostridium scindens str. JCM 10422 TH-82 prokMSA_id:33482 AB020727.1 Clostridium scindens str. JCM 10418 prokMSA_id:37201 AB020730.1 Clostridium scindens str. JCM 10421 I-10 prokMSA_id:39133 AB020729.1 Clostridium scindens str. JCM 10420 M-18 prokMSA_id:45711 AB020883.1 Clostridium scindens str. JCM 6567 prokMSA_id:48553 AB020728.1 Clostridium scindens str. JCM 10419 Y-1113 prokMSA_id:50457 AF262238.1 Clostridium scindens str. ATCC 35704 prokMSA_id:54563 AF262236.1 Clostridium scindens str. VPI 12708 prokMSA_id:86360 AY244789.1 Clostridium scindens str. 2002-69680 2.21.4.1.1.1.2786 OTU 3 seqs prokMSA_id:40074 AY007244.1 Clostridium glycolicum str. CIN5 prokMSA_id:84941 AY244773.1 Clostridium glycolicum str. 2002-87768 prokMSA_id:104123 AY548780.1 Clostridium sp. str. PPf35L1 2.21.4.1.1.1.2790 OTU 2 seqs prokMSA_id:33116 AF224674.1 Clostridium sp. str. FL3 prokMSA_id:39630 AF224675.1 Clostridium sp. str. FL4 2.21.4.1.1.1.2794 OTU 3 seqs prokMSA_id:51694 AJ320233.1 Caminicella sporogenes str. AM1114 prokMSA_id:79538 AJ431241.1 Clostridium sp. str. Dex60-28 prokMSA_id:79586 AJ431242.1 Clostridium sp. str. Dex60-4 2.21.4.1.1.1.2807 OTU 1 seq prokMSA_id:41951 AF255644.1 EBPR sludge clone Ebpr14 2.21.4.1.1.1.2811 OTU 1 seq prokMSA_id:14111 D14639.1 str RT 2.21.4.1.1.1.2816 OTU 1 seq prokMSA_id:82089 AY217423.1 TCE-dechlorinating microbial community clone 4C 2.21.4.1.1.1.2829 OTU 1 seq prokMSA_id:51807 AB031328.1 Clostridium sp. str. NT-2 2.21.4.1.1.1.2846 OTU 1 seq prokMSA_id:44669 AF349756.2 reductive DCE-dehalogenating enrichment clone DCE25 2.21.4.1.1.1.2892 OTU 2 seqs prokMSA_id:14089 X71858.1 Clostridium polysaccharolyticum prokMSA_id:14090 X77839.1 Clostridium polysaccharolyticum 2.21.4.1.1.1.2898 OTU 8 seqs prokMSA_id:30495 AF132271.1 adult human fecal matter clone adhufec420 prokMSA_id:38717 AF446129.1 Clostridiaceae str. LEMV61 prokMSA_id:39079 AJ132842.1 Dorea longicatena str. III-35 prokMSA_id:58016 AB094156.1 feces adult human clone C-52 prokMSA_id:61097 AF530297.1 Crohn adult fecal flora clone cadhufec010h7 prokMSA_id:89849 AY328371.1 feces human infant clone inhufecB-27 prokMSA_id:92241 AY343310.1 human feces clone DONOR_41 prokMSA_id:94532 AY386237.2 raw liquid sewage clone Dpcom147 2.21.4.1.1.1.2915 OTU 1 seq prokMSA_id:76251 AY158079.1 Tepidibacter thalassicus str. SC 562 2.21.4.1.1.1.2924 OTU 1 seq prokMSA_id:44883 AF371594.1 phylotype OTU-228 swine intestine clone p-2486-18B5 2.21.4.1.1.1.2933 OTU 1 seq prokMSA_id:14145 X76161.1 "Clostridium aminobutyricum" 2.21.4.1.1.1.2984 OTU 1 seq prokMSA_id:14131 X77837.1 Clostridium halophilum 2.21.4.1.1.1.2990 OTU 1 seq prokMSA_id:14132 AF016691.1 Acidaminobacter hydrogenoformans 2.21.4.1.1.1.3003 OTU 1 seq prokMSA_id:79318 AJ431244.1 Clostridium sp. str. Dex60-75 2.21.4.1.1.1.3004 OTU 1 seq prokMSA_id:74779 AB023973.1 Clostridium hylemonae str. TN-272 2.21.4.1.1.1.3012 OTU 5 seqs prokMSA_id:70837 AF371691.1 phylotype OTU-165 swine intestine clone p-478-o2 prokMSA_id:83050 AY238334.1 Clostridium sp. str. MDA2315 prokMSA_id:100539 AB185550.1 rumen clone F23-F06 prokMSA_id:102944 AY438672.1 Clostridium bartlettii str. WAL 16138 prokMSA_id:104433 AB185612.1 rumen clone F24-D12 2.21.4.1.1.1.3019 OTU 1 seq prokMSA_id:83820 AY245527.1 Tepidibacter formicigenes str. DV1184 2.21.4.1.1.1.3021 OTU 1 seq prokMSA_id:67640 AF458779.1 Clostridium caminithermale str. DVird3 2.21.4.1.1.1.3027 OTU 2 seqs prokMSA_id:13965 X76163.1 Clostridium aerotolerans prokMSA_id:13973 X71855.1 Clostridium xylanolyticum 2.21.4.1.1.1.3031 OTU 1 seq prokMSA_id:19162 AJ229220.1 anoxic bulk soil flooded rice microcosm clone BSV76 2.21.4.1.1.1.3039 OTU 1 seq prokMSA_id:14168 X77836.1 Clostridium formicoaceticum 2.21.4.1.1.1.3040 OTU 1 seq prokMSA_id:14169 X77851.1 Clostridium felsineum 2.21.4.1.1.1.3041 OTU 1 seq prokMSA_id:14099 X71853.1 Clostridium populeti 2.21.4.1.1.1.3049 OTU 1 seq prokMSA_id:14189 Z69929.1 Clostridium paradoxum str. DSM 7308T 2.21.4.1.1.1.3050 OTU 1 seq prokMSA_id:14170 AF142918.1 clone PENDANT-5 2.21.4.1.1.1.3057 OTU 1 seq prokMSA_id:49274 AY033434.1 Clostridium lactatifermentans str. G17 2.21.4.1.1.1.3067 OTU 1 seq prokMSA_id:40259 Y18183.1 Clostridium aceticum str. DSM 1496 2.21.4.1.1.1.3069 OTU 1 seq prokMSA_id:42001 AJ431342.1 Greenland:Ikka Fjord clone 2.21.4.1.1.1.3074 OTU 1 seq prokMSA_id:14184 Z69942.1 Clostridium paradoxum str. DSM 7308T 2.21.4.1.1.1.3077 OTU 4 seqs prokMSA_id:14212 X76750.1 Clostridium glycolinum prokMSA_id:18262 AF371689.1 phylotype OTU-164 swine intestine clone p-248-o5 prokMSA_id:38819 AJ404682.1 anaerobic dechlorinating enrichment clone ZF5 ZF5 prokMSA_id:46716 AB075771.1 Clostridium sordellii str. ATCC 9714 2.21.4.1.1.1.3096 OTU 1 seq prokMSA_id:45283 AF467248.1 Alkaliphilus crotonatoxidans str. B11-2 2.21.4.1.1.1.3104 OTU 1 seq prokMSA_id:19154 AJ271453.1 Clostridium elmenteitii E2SE1-B 2.21.4.1.1.1.3108 OTU 14 seqs prokMSA_id:14185 Z69927.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14186 Z69928.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14187 Z69941.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14188 Z69940.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14190 Z69930.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14191 Z69931.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14192 Z69935.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14193 Z69932.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14194 Z69936.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14195 Z69937.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14196 Z69933.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14197 Z69938.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14198 Z69934.1 Clostridium paradoxum str. DSM 7308T prokMSA_id:14199 Z69939.1 Clostridium paradoxum str. DSM 7308T 2.21.4.1.1.1.3119 OTU 1 seq prokMSA_id:37414 AF158712.1 chloroethene dechlorinating enrichment clone PM3 2.21.4.1.1.1.3125 OTU 1 seq prokMSA_id:74243 AF317379.1 feedlot manure clone B6 2.21.4.1.1.1.3134 OTU 1 seq prokMSA_id:32467 AF371679.1 phylotype OTU-355 swine intestine clone p-4247-4Wa3 2.21.4.1.1.1.3163 OTU 1 seq prokMSA_id:17494 AF126687.1 Clostridium fimetarium str. Z-2189; DSM 9179 2.21.4.1.1.1.3201 OTU 1 seq prokMSA_id:31552 AF349758.2 reductive TCE-dehalogenating enrichment clone TCE8 2.21.4.1.1.1.3219 OTU 1 seq prokMSA_id:60603 AF407695.1 Great Artesian Basin clone R82 2.21.4.1.1.1.3227 OTU 1 seq prokMSA_id:36762 AF158717.1 chloroethene dechlorinating enrichment clone PM33 2.21.4.1.1.1.4149 OTU 1 seq prokMSA_id:30476 AF132283.1 adult human fecal matter clone adhufec108 2.21.4.1.1.1.4150 OTU 1 seq prokMSA_id:36503 AF371801.1 phylotype OTU-363 swine intestine clone p-4322-4Wa3 2.21.4.1.1.1.4153 OTU 1 seq prokMSA_id:16227 X97432.1 Clostridium vincentii 2.21.4.1.1.1.4154 OTU 1 seq prokMSA_id:79436 AY187622.1 Clostridium tunisiense str. DSM 15206 2.21.4.1.1.1.4156 OTU 1 seq prokMSA_id:68943 AF407388.1 MCB-contaminated groundwater-treating reactor clone RA9C1 2.21.4.1.1.1.4157 OTU 1 seq prokMSA_id:77693 AB089043.1 termite gut homogenate clone Rs-A15 2.21.4.1.1.1.4160 OTU 1 seq prokMSA_id:32194 AB034038.1 rumen clone 5C0d-4 2.21.4.1.1.1.4161 OTU 1 seq prokMSA_id:16083 AF050584.1 contaminated aquifer clone WCHA1-53 2.21.4.1.1.1.4163 OTU 1 seq prokMSA_id:16110 AF104215.1 Caloramator coolhaasii str. Z 2.21.4.1.1.1.4166 OTU 1 seq prokMSA_id:16796 AF371819.1 phylotype OTU-320 swine intestine clone p-3230-42A2 2.21.4.1.1.1.4169 OTU 1 seq prokMSA_id:56713 AY100566.1 clone cvf70173 2.21.4.1.1.1.4172 OTU 1 seq prokMSA_id:40062 AB018184.1 multiforme str. JCM 6484 2.21.4.1.1.1.4173 OTU 1 seq prokMSA_id:78088 AB089020.1 termite gut homogenate clone Rs-D81 bacterium 2.21.4.1.1.1.4174 OTU 2 seqs prokMSA_id:16157 S46737.1 Clostridium tetanomorphum prokMSA_id:16159 X68184.1 Clostridium tetanomorphum 2.21.4.1.1.1.4177 OTU 1 seq prokMSA_id:31319 AF241842.1 Clostridium subterminale DSM 2636 2.21.4.1.1.1.4180 OTU 1 seq prokMSA_id:77848 AB089028.1 termite gut homogenate clone Rs-M23 bacterium 2.21.4.1.1.1.4185 OTU 1 seq prokMSA_id:27375 AJ276992.1 Clostridium uliginosum str. CK55 2.21.4.1.1.1.4187 OTU 1 seq prokMSA_id:70302 AF538854.1 Clostridiales oral clone P4PB_122 P3 2.21.4.1.1.1.4190 OTU 1 seq prokMSA_id:70408 AJ289214.1 2.21.4.1.1.1.4191 OTU 1 seq prokMSA_id:49549 AB020191.1 Clostridium beijerinckii str. JCM 7847 2.21.4.1.1.1.4192 OTU 1 seq prokMSA_id:43660 AF424412.1 G+C Gram-positive clone MERTZ_2CM_209 2.21.4.1.1.1.4193 OTU 13 seqs prokMSA_id:16132 X73442.1 Clostridium putrificum prokMSA_id:16133 L37593.1 Clostridium botulinum prokMSA_id:16139 X73844.1 Clostridium botulinum prokMSA_id:16140 X68189.1 Clostridium sporogenes prokMSA_id:16141 AF105402.1 Clostridium botulinum str. LP1284 prokMSA_id:16143 X68185.1 Clostridium botulinum prokMSA_id:16147 L37586.1 Clostridium botulinum prokMSA_id:16148 L37585.1 Clostridium botulinum type A prokMSA_id:16149 X68172.1 Clostridium botulinum prokMSA_id:16154 X68186.1 Clostridium botulinum prokMSA_id:90396 AY321658.1 Clostridium sp. str. MD4 prokMSA_id:103741 AJ579907.1 Clostridium sporogenes prokMSA_id:104093 AY442816.1 Clostridium sporogenes YE52 2.21.4.1.1.1.4197 OTU 1 seq prokMSA_id:34959 AJ237756.2 Clostridium acidisoli str. CK74 2.21.4.1.1.1.4198 OTU 3 seqs prokMSA_id:19089 AF132255.1 adult human fecal matter clone adhufec269 prokMSA_id:37799 AF371798.1 phylotype OTU-129 swine intestine clone p-2856-6C5 prokMSA_id:55945 AF530344.1 Crohn adult fecal flora clone cadhufec17g05sav 2.21.4.1.1.1.4199 OTU 1 seq prokMSA_id:36378 AF371777.1 phylotype OTU-145 swine intestine clone p-1528-b5 2.21.4.1.1.1.4202 OTU 1 seq prokMSA_id:34823 AF371937.1 phylotype OTU-383 swine intestine clone p-5152-2Wb3 2.21.4.1.1.1.4204 OTU 1 seq prokMSA_id:16163 Y15985.1 Clostridium sp. str. RPec1 2.21.4.1.1.1.4206 OTU 1 seq prokMSA_id:16164 X79862.1 Clostridium acetireducens str. 30A 2.21.4.1.1.1.4208 OTU 2 seqs prokMSA_id:16239 AF092548.1 Clostridium gasigenes str. DSM 12272 prokMSA_id:16240 AF143692.1 Clostridium gasigenes str. R26 2.21.4.1.1.1.4211 OTU 1 seq prokMSA_id:81682 AY208919.1 Clostridium fallax VA24831_02 2.21.4.1.1.1.4217 OTU 1 seq prokMSA_id:35027 AF401541.1 landfill clone g3B5 2.21.4.1.1.1.4218 OTU 1 seq prokMSA_id:18115 AJ229232.1 anoxic bulk soil flooded rice microcosm clone BSV89 2.21.4.1.1.1.4225 OTU 1 seq prokMSA_id:81980 AB100486.1 termite gut clone Rs-116 2.21.4.1.1.1.4229 OTU 3 seqs prokMSA_id:79176 AE015936.1 Clostridium tetani E88 str. Massachusetts prokMSA_id:79236 AE015937.1 Clostridium tetani E88 str. Massachusetts prokMSA_id:79542 AE015945.1 Clostridium tetani E88 str. Massachusetts 2.21.4.1.1.1.4231 OTU 1 seq prokMSA_id:27748 AF418957.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTE5 2.21.4.1.1.1.4234 OTU 1 seq prokMSA_id:16379 AB034011.1 rumen clone 3C0d-11 2.21.4.1.1.1.4243 OTU 1 seq prokMSA_id:27881 AF407403.1 MCB-contaminated groundwater-treating reactor clone RA13C3 2.21.4.1.1.1.4244 OTU 1 seq prokMSA_id:77963 AB089011.1 termite gut homogenate clone Rs-K46 bacterium 2.21.4.1.1.1.4245 OTU 1 seq prokMSA_id:73946 AF371780.1 phylotype OTU-282 swine intestine clone p-2448-18B5 2.21.4.1.1.1.4251 OTU 1 seq prokMSA_id:19611 AF371779.1 phylotype OTU-334 swine intestine clone p-1674-b3 2.21.4.1.1.1.4252 OTU 1 seq prokMSA_id:38129 AF371948.1 phylotype OTU-393 swine intestine clone p-5460-2Wb5 2.21.4.1.1.1.4253 OTU 1 seq prokMSA_id:51886 AF276451.1 PCB-contaminated St. Lawrence River sediment clone RFLP 17E 2.21.4.1.1.1.4259 OTU 1 seq prokMSA_id:16180 U62838.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB15 2.21.4.1.1.1.4263 OTU 1 seq prokMSA_id:29311 AB078861.1 Clostridiaceae str. 80Wd 2.21.4.1.1.1.4264 OTU 1 seq prokMSA_id:16185 X73439.1 Clostridium collagenovorans 2.21.4.1.1.1.4265 OTU 1 seq prokMSA_id:78138 AB088969.1 termite gut homogenate clone Rs-N70 bacterium 2.21.4.1.1.1.4266 OTU 1 seq prokMSA_id:78067 AB088951.1 termite gut homogenate clone Rs-M86 bacterium 2.21.4.1.1.1.4267 OTU 1 seq prokMSA_id:82016 AB100485.1 termite gut clone Rs-114 2.21.4.1.1.1.4271 OTU 1 seq prokMSA_id:73132 AJ488093.1 chlorobenzene-degrading consortium clone IIIA-3 2.21.4.1.1.1.4272 OTU 1 seq prokMSA_id:78224 AB088965.1 termite gut homogenate clone Rs-M34 bacterium 2.21.4.1.1.1.4275 OTU 1 seq prokMSA_id:16181 M59087.1 Clostridium botulinum 2.21.4.1.1.1.4278 OTU 1 seq prokMSA_id:77360 AF482434.1 granular sludge clone R1p16 2.21.4.1.1.1.4282 OTU 1 seq prokMSA_id:53929 AF371827.1 phylotype OTU-279 swine intestine clone p-3024-SwA5 2.21.4.1.1.1.4285 OTU 1 seq prokMSA_id:35135 AF401540.1 landfill clone g3Br5 2.21.4.1.1.1.4286 OTU 1 seq prokMSA_id:81242 AB100467.1 termite gut clone Rs-L37 2.21.4.1.1.1.4287 OTU 1 seq prokMSA_id:34407 AF181848.1 Caloramator viterbiensis str. JW/MS-VS5 2.21.4.1.1.1.4296 OTU 1 seq prokMSA_id:71518 AB081585.1 Clostridiaceae str. A4d 2.21.4.1.1.1.4297 OTU 1 seq prokMSA_id:63296 AF523923.1 forested wetland clone RCP2-43 2.21.4.1.1.1.4299 OTU 1 seq prokMSA_id:81326 AB100466.1 termite gut clone Rs-L02 2.21.4.1.1.1.4300 OTU 1 seq prokMSA_id:82058 AB100493.1 termite gut clone Rs-060 2.21.4.1.1.1.4303 OTU 2 seqs prokMSA_id:32020 Y18187.1 Clostridium orbiscindens str. DSM 6740 prokMSA_id:88785 AY328360.1 feces human infant clone inhufecA-19 2.21.4.1.1.1.4306 OTU 1 seq prokMSA_id:86415 AY261814.1 UASB reactor granular sludge clone PD-UASB-4 bacterium 2.21.4.1.1.1.4309 OTU 6 seqs prokMSA_id:16192 D86305.1 Candidatus Arthromitus sp. SFB-mouse prokMSA_id:16193 X77814.1 Segmented filamentous bacterium prokMSA_id:16194 X87244.1 Candidatus Arthromitus prokMSA_id:34378 AJ308387.2 mouse gastrointestine clone S25-6 prokMSA_id:70665 E11861.1 segment prokMSA_id:72493 E11886.1 novel Segmented filamentous bacterium BAL01 2.21.4.1.1.1.4310 OTU 1 seq prokMSA_id:82036 AB100478.1 termite gut clone Rs-056 2.21.4.1.1.1.4311 OTU 2 seqs prokMSA_id:15970 AF001719.1 rumen clone RC38 prokMSA_id:16005 AB009181.1 rumen clone RFN23 bacterium 2.21.4.1.1.1.4318 OTU 1 seq prokMSA_id:16769 AJ387881.1 clone anoxSCC-25 2.21.4.1.1.1.4321 OTU 1 seq prokMSA_id:78187 AB089045.1 termite gut homogenate clone Rs-C76 bacterium 2.21.4.1.1.1.4323 OTU 2 seqs prokMSA_id:34479 AF281142.1 Clostridium sp. str. T7 prokMSA_id:44328 AJ250960.1 Clostridium sp. 'CCUG 42741' str. CCUG 42741 'CCUG 2.21.4.1.1.1.4326 OTU 1 seq prokMSA_id:19113 AB040497.1 Oscillospira guilliermondii 2.21.4.1.1.1.4327 OTU 3 seqs prokMSA_id:21464 AB040499.1 Oscillospira guilliermondii prokMSA_id:31587 AB040495.1 Oscillospira guilliermondii prokMSA_id:49276 AB040498.1 Oscillospira guilliermondii 2.21.4.1.1.1.4328 OTU 2 seqs prokMSA_id:27099 AJ289210.1 prokMSA_id:29859 AJ289208.1 2.21.4.1.1.1.4337 OTU 3 seqs prokMSA_id:16201 X76649.1 Sarcina ventriculi prokMSA_id:16202 AF110272.1 Sarcina ventriculi prokMSA_id:73781 AF371846.1 phylotype OTU-157 swine intestine clone p-37-a5 2.21.4.1.1.1.4339 OTU 5 seqs prokMSA_id:16235 U51843.1 Clostridium chauvoei prokMSA_id:35112 AF371932.1 phylotype OTU-154 swine intestine clone p-4936-6Wb2 prokMSA_id:37589 Y18176.1 Clostridium disporicum str. DSM 5521 prokMSA_id:41092 AF371837.1 phylotype OTU-154 swine intestine clone p-2117-s959-2 prokMSA_id:70497 U59278.1 Clostridium septicum 2.21.4.1.1.1.4340 OTU 2 seqs prokMSA_id:16176 AF142928.1 clone PENDANT-16 prokMSA_id:16177 AF142915.1 clone PENDANT-1 2.21.4.1.1.1.4341 OTU 2 seqs prokMSA_id:23882 Y18173.1 Clostridium haemolyticum str. DSM 5565 prokMSA_id:28961 AB041865.1 Clostridium novyi type C 2.21.4.1.1.1.4342 OTU 2 seqs prokMSA_id:30916 AF401536.1 landfill clone g3R1 prokMSA_id:49948 AF401533.1 landfill clone g3W3 2.21.4.1.1.1.4345 OTU 1 seq prokMSA_id:15975 AB009220.1 rumen clone RFN72 bacterium 2.21.4.1.1.1.4346 OTU 1 seq prokMSA_id:73606 AF376230.1 ckncm326-B4-13 clone 2.21.4.1.1.1.4348 OTU 1 seq prokMSA_id:27541 AJ387878.1 clone anoxSCC-7 2.21.4.1.1.1.4349 OTU 1 seq prokMSA_id:15977 AB011057.1 Clostridium josui str. FERM P-9684 2.21.4.1.1.1.4353 OTU 5 seqs prokMSA_id:16242 X68170.1 Clostridium botulinum type E prokMSA_id:16245 L37592.1 Clostridium botulinum prokMSA_id:16246 X68171.1 Clostridium botulinum prokMSA_id:16262 X68173.1 Clostridium botulinum type B prokMSA_id:88762 AY303799.1 Clostridium botulinum str. AIP 355.02 2.21.4.1.1.1.4354 OTU 1 seq prokMSA_id:16925 AJ318164.1 Waste-gas biofilter clone BIri47 2.21.4.1.1.1.4357 OTU 1 seq prokMSA_id:85903 AF550610.1 Lachnospiraceae bacterium 19gly4 2.21.4.1.1.1.4359 OTU 1 seq prokMSA_id:77816 AB089047.1 termite gut homogenate clone Rs-C69 bacterium 2.21.4.1.1.1.4360 OTU 1 seq prokMSA_id:15989 L09173.1 Clostridium thermocellum 2.21.4.1.1.1.4363 OTU 1 seq prokMSA_id:45063 AF317376.1 feedlot manure clone B54 2.21.4.1.1.1.4364 OTU 1 seq prokMSA_id:69664 AF481208.1 E1 clone MCE3_9 2.21.4.1.1.1.4369 OTU 1 seq prokMSA_id:77864 AB089032.1 termite gut homogenate clone Rs-N73 bacterium 2.21.4.1.1.1.4373 OTU 1 seq prokMSA_id:25957 AF371792.1 phylotype OTU-132 swine intestine clone p-2479-18B5 2.21.4.1.1.1.4374 OTU 1 seq prokMSA_id:74480 AB034126.1 rumen clone 4C28d-12 2.21.4.1.1.1.4378 OTU 1 seq prokMSA_id:29102 AJ387884.1 clone anoxSCC-33 2.21.4.1.1.1.4380 OTU 1 seq prokMSA_id:16059 L09177.1 Clostridium cellulosi 2.21.4.1.1.1.4382 OTU 6 seqs prokMSA_id:16107 X99238.1 Thermobrachium celere prokMSA_id:16108 X75788.1 Caloramator indicus prokMSA_id:38722 AF286863.1 Caloramator sp. str. JW/JH-1 prokMSA_id:64744 AY102936.1 Caloramator uzoniensis str. JW/VK-KS5R prokMSA_id:68459 AF489534.1 Caloramator uzoniensis str. JW/VK-KU2 prokMSA_id:104028 AY728366.1 Guguan hot spring isolate str. K2L1 2.21.4.1.1.1.4384 OTU 1 seq prokMSA_id:26704 AF371823.1 phylotype OTU-108 swine intestine clone p-2573-9F5 2.21.4.1.1.1.4386 OTU 1 seq prokMSA_id:19341 AJ408169.1 equine large intestine clone ML23 2.21.4.1.1.1.4391 OTU 1 seq prokMSA_id:16203 D14151.1 Sarcina ventriculi 2.21.4.1.1.1.4393 OTU 2 seqs prokMSA_id:16199 AJ222546.1 Anaerobacter polyendosporus prokMSA_id:42703 Y18189.1 Anaerobacter polyendosporus 2.21.4.1.1.1.4398 OTU 1 seq prokMSA_id:24896 AF429377.1 chicken intestinal s clone CCAJG161 2.21.4.1.1.1.4399 OTU 1 seq prokMSA_id:43679 AJ229231.1 anoxic bulk soil flooded rice microcosm clone BSV87 clone 2.21.4.1.1.1.4404 OTU 1 seq prokMSA_id:16062 AF050581.1 contaminated aquifer clone WCHB1-49 2.21.4.1.1.1.4406 OTU 1 seq prokMSA_id:77727 AB088977.1 termite gut homogenate clone Rs-J39 bacterium 2.21.4.1.1.1.4409 OTU 1 seq prokMSA_id:16063 AB009176.1 rumen clone RFN17 bacterium 2.21.4.1.1.1.4411 OTU 1 seq prokMSA_id:16017 AF001706.1 rumen clone RC15 2.21.4.1.1.1.4412 OTU 1 seq prokMSA_id:16019 AF001758.1 rumen clone RF26 2.21.4.1.1.1.4413 OTU 1 seq prokMSA_id:22509 AJ408103.1 equine large intestine clone DL16 2.21.4.1.1.1.4414 OTU 1 seq prokMSA_id:16138 X77835.1 Clostridium magnum 2.21.4.1.1.1.4415 OTU 1 seq prokMSA_id:78388 AB089041.1 termite gut homogenate clone Rs-K32 bacterium 2.21.4.1.1.1.4417 OTU 1 seq prokMSA_id:29313 AJ408114.1 equine large intestine clone DL27 2.21.4.1.1.1.4418 OTU 1 seq prokMSA_id:77804 AB088966.2 termite gut homogenate clone Rs-H18 bacterium 2.21.4.1.1.1.4419 OTU 2 seqs prokMSA_id:29799 AJ387886.1 clone anoxSCC-44 prokMSA_id:45660 AJ387882.1 clone anoxSCC-27 2.21.4.1.1.1.4420 OTU 1 seq prokMSA_id:29174 AF401537.1 landfill clone g3P17 2.21.4.1.1.1.4421 OTU 1 seq prokMSA_id:31495 AB045747.1 Japan:HokkaidoShizunaiHU Livestock Farm clone YT1 2.21.4.1.1.1.4422 OTU 1 seq prokMSA_id:30766 AJ229202.1 anoxic bulk soil flooded rice microcosm clone BSV50 clone 2.21.4.1.1.1.4424 OTU 1 seq prokMSA_id:77738 AB088982.1 termite gut homogenate clone Rs-M05 bacterium 2.21.4.1.1.1.4426 OTU 1 seq prokMSA_id:16214 X76745.1 Clostridium quinii 2.21.4.1.1.1.4427 OTU 1 seq prokMSA_id:16144 L08062.1 Clostridium tyrobutyricum 2.21.4.1.1.1.4431 OTU 1 seq prokMSA_id:32182 Y18179.1 Clostridium cylindrosporum str. DSM 605 2.21.4.1.1.1.4436 OTU 1 seq prokMSA_id:16145 AJ009473.1 anaerobic TCB-transforming consortium clone SJA-65 2.21.4.1.1.1.4437 OTU 1 seq prokMSA_id:16072 X81125.1 Clostridium viride 2.21.4.1.1.1.4438 OTU 1 seq prokMSA_id:16219 X98395.1 Clostridium sp. str. WV6 2.21.4.1.1.1.4439 OTU 1 seq prokMSA_id:16190 X78072.1 Clostridium acetobutylicum 2.21.4.1.1.1.4441 OTU 1 seq prokMSA_id:16073 AF050582.1 contaminated aquifer clone WCHB1-54 2.21.4.1.1.1.4444 OTU 1 seq prokMSA_id:15976 AB015268.1 deepest cold-seep area Japan Trench clone JTB32 2.21.4.1.1.1.4448 OTU 1 seq prokMSA_id:16195 X80834.1 long segmented filamentous organism 2.21.4.1.1.1.4455 OTU 1 seq prokMSA_id:53642 Y18180.1 Clostridium thermosuccinogenes str. DSM 5807 2.21.4.1.1.1.4456 OTU 1 seq prokMSA_id:43950 AF371803.1 phylotype OTU-143 swine intestine clone p-1316-a5 2.21.4.1.1.1.4459 OTU 1 seq prokMSA_id:81634 AB100469.1 termite gut clone Rs-109 2.21.4.1.1.1.4460 OTU 1 seq prokMSA_id:16220 AF069742.1 Clostridium frigidicarnis str. SPL77A 2.21.4.1.1.1.4461 OTU 1 seq prokMSA_id:66188 AJ488075.1 chlorobenzene-degrading consortium clone IA-24 2.21.4.1.1.1.4462 OTU 1 seq prokMSA_id:43602 AJ387883.1 clone anoxSCC-31 2.21.4.1.1.1.4463 OTU 1 seq prokMSA_id:50120 AJ229216.1 anoxic bulk soil flooded rice microcosm clone BSV72 clone 2.21.4.1.1.1.4466 OTU 1 seq prokMSA_id:35865 AF371835.1 phylotype OTU-151 swine intestine clone p-406-o3 2.21.4.1.1.1.4467 OTU 1 seq prokMSA_id:16230 X77844.1 Clostridium celatum 2.21.4.1.1.1.4469 OTU 1 seq prokMSA_id:25054 AF371765.1 phylotype OTU-125 swine intestine clone p-1082-a5 2.21.4.1.1.1.4470 OTU 1 seq prokMSA_id:16166 X74770.1 Clostridium tetani 2.21.4.1.1.1.4472 OTU 1 seq prokMSA_id:49771 AJ229181.1 unidentified eubacterium clone BSV07 2.21.4.1.1.1.4475 OTU 1 seq prokMSA_id:78184 AB089035.1 termite gut homogenate clone Rs-N02 bacterium 2.21.4.1.1.1.4477 OTU 1 seq prokMSA_id:78383 AB089042.1 termite gut homogenate clone Rs-N85 bacterium 2.21.4.1.1.1.4478 OTU 1 seq prokMSA_id:34412 AF371797.1 swine intestine clone p-956-s962-5 2.21.4.1.1.1.4479 OTU 1 seq prokMSA_id:44693 AJ418058.1 clone L10-14 2.21.4.1.1.1.4480 OTU 1 seq prokMSA_id:73000 AF275949.1 Clostridium neonatale str. LCDC no.99--005 2.21.4.1.1.1.4483 OTU 1 seq prokMSA_id:22115 AF371824.1 phylotype OTU-150 swine intestine clone p-2406-55G5 2.21.4.1.1.1.4485 OTU 1 seq prokMSA_id:41287 AF371776.1 phylotype OTU-146 swine intestine clone p-1651-c5 2.21.4.1.1.1.4486 OTU 1 seq prokMSA_id:21032 AF401538.1 landfill clone g3H3 2.21.4.1.1.1.4488 OTU 1 seq prokMSA_id:48313 AF407399.1 MCB-contaminated groundwater-treating reactor clone RA13C2 2.21.4.1.1.1.4490 OTU 1 seq prokMSA_id:20372 AB056707.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT25 2.21.4.1.1.1.4496 OTU 1 seq prokMSA_id:42993 AF429356.1 chicken intestinal s clone CCAJG166 2.21.4.1.1.1.4497 OTU 1 seq prokMSA_id:77671 AB089033.1 termite gut homogenate clone Rs-N16 bacterium 2.21.4.1.1.1.4502 OTU 1 seq prokMSA_id:59826 AY133360.1 coastal Antarctic sediment clone BB2_90 2.21.4.1.1.1.4506 OTU 1 seq prokMSA_id:17161 Y18178.1 Clostridium autoethanogenum str. DSM 10061 2.21.4.1.1.1.4507 OTU 1 seq prokMSA_id:77761 AB088984.1 termite gut homogenate clone Rs-N21 bacterium 2.21.4.1.1.1.4516 OTU 1 seq prokMSA_id:47464 AF371843.1 phylotype OTU-153 swine intestine clone p-2194-s959-3 2.21.4.1.1.1.4522 OTU 1 seq prokMSA_id:74798 AF132261.1 adult human fecal matter clone adhufec311 2.21.4.1.1.1.4524 OTU 1 seq prokMSA_id:81110 AB100476.1 termite gut clone Rs-093 2.21.4.1.1.1.4530 OTU 1 seq prokMSA_id:46741 AF332717.1 granular sludge clone UASB_brew_B68 2.21.4.1.1.1.4531 OTU 1 seq prokMSA_id:29902 AB034030.1 rumen clone 4C0d-17 2.21.4.1.1.1.4532 OTU 3 seqs prokMSA_id:20034 Y18813.1 Clostridium scatologenes str. SL1 prokMSA_id:64232 AJ427628.1 Clostridium scatologenes str. FP prokMSA_id:77703 AY170379.1 Clostridium carboxidivorans str. P7 2.21.4.1.1.1.4534 OTU 2 seqs prokMSA_id:15959 AJ229248.1 Clostridium sp. str. FCB45 prokMSA_id:15960 AJ229249.1 Clostridium sp. str. FCB90-1 2.21.4.1.1.1.4542 OTU 1 seq prokMSA_id:31973 AJ408998.1 human colonic clone HuCB24 2.21.4.1.1.1.4545 OTU 1 seq prokMSA_id:40798 AF371806.1 phylotype OTU-273 swine intestine clone p-2560-9F5 2.21.4.1.1.1.4547 OTU 4 seqs prokMSA_id:16225 X73445.1 Clostridium paraputrificum prokMSA_id:16228 AB032556.1 Clostridium paraputrificum str. M-21 prokMSA_id:16237 M59102.1 Clostridium baratii prokMSA_id:103941 AY442815.1 Clostridium paraputrificum YE51 2.21.4.1.1.1.4548 OTU 1 seq prokMSA_id:78376 AB089029.1 termite gut homogenate clone Rs-Q69 bacterium 2.21.4.1.1.1.4550 OTU 1 seq prokMSA_id:45365 AF371790.1 phylotype OTU-134 swine intestine clone p-320-a3 2.21.4.1.1.1.4551 OTU 1 seq prokMSA_id:16187 X78070.1 Clostridium acetobutylicum 2.21.4.1.1.1.4554 OTU 1 seq prokMSA_id:81528 AB100479.1 termite gut clone Rs-068 2.21.4.1.1.1.4555 OTU 1 seq prokMSA_id:16153 M59113.1 Clostridium tyrobutyricum 2.21.4.1.1.1.4558 OTU 3 seqs prokMSA_id:16018 AF001740.1 rumen clone RF7 prokMSA_id:16029 AB009217.1 rumen clone RFN7 prokMSA_id:17907 AB034042.1 rumen clone 5C0d-9 2.21.4.1.1.1.4559 OTU 1 seq prokMSA_id:85153 AY244908.1 cow rumen clone BF30 2.21.4.1.1.1.4560 OTU 30 seqs prokMSA_id:16243 X77843.1 "Clostridium caliptrosporum" prokMSA_id:16248 U16122.1 "Clostridium saccharoperbutylacetonicum" prokMSA_id:16250 X68180.1 Clostridium beijerinckii prokMSA_id:16258 X76742.1 "Clostridium corinoforum" prokMSA_id:16259 X68179.1 Clostridium beijerinckii prokMSA_id:16264 X76749.1 "Clostridium favososporum" prokMSA_id:16266 X78073.1 Clostridium acetobutylicum prokMSA_id:16268 S46735.1 Clostridium acetobutylicum prokMSA_id:16270 U16147.1 Clostridium acetobutylicum prokMSA_id:16271 X71857.1 Clostridium puniceum prokMSA_id:16275 U16165.1 Clostridium acetobutylicum prokMSA_id:16277 X81021.1 Clostridium acetobutylicum prokMSA_id:27405 Y18171.1 Clostridium roseum str. DSM 51 prokMSA_id:32781 AB020188.1 Clostridium beijerinckii str. JCM 7839 prokMSA_id:34846 AB020189.1 Clostridium beijerinckii str. JCM 7844 prokMSA_id:39254 AB020190.1 Clostridium beijerinckii str. JCM 7845 prokMSA_id:47159 AB020187.1 Clostridium beijerinckii str. JCM 7833 prokMSA_id:59906 AY133085.1 TCE-contaminated site clone ccslm2120 prokMSA_id:67023 AJ458419.1 Clostridium diolis str. E5 prokMSA_id:67024 AJ458418.2 Clostridium diolis str. DSM 5431 prokMSA_id:67025 AJ458417.1 Clostridium diolis str. DSM 5430 prokMSA_id:84677 AY228334.1 Clostridium chromoreductans str. GCAF-1 prokMSA_id:96776 AB114256.1 Clostridium sp. str. UsIt101-1 prokMSA_id:97280 AB114257.1 Clostridium sp. str. UsIt102-2 prokMSA_id:97482 AB114254.1 Clostridium sp. str. UsS102-1 prokMSA_id:97998 AB114252.1 Clostridium sp. str. Kas202-1 prokMSA_id:98062 AB114255.1 Clostridium sp. str. Usu-S-R3 prokMSA_id:98508 AB114253.1 Clostridium sp. str. UsS101-2 prokMSA_id:105374 AY188844.1 Clostridium sp. str. C1T/10 prokMSA_id:105532 AY188845.1 Clostridium sp. str. L1/8 2.21.4.1.1.1.4561 OTU 2 seqs prokMSA_id:16216 X76164.1 "Clostridium longisporum" prokMSA_id:16223 X71850.1 Clostridium chartatabidum 2.21.4.1.1.1.4566 OTU 1 seq prokMSA_id:29413 AF371796.1 swine intestine clone p-2657-65A5 2.21.4.1.1.1.4570 OTU 8 seqs prokMSA_id:16652 AJ408991.1 human colonic clone HuCB7 prokMSA_id:27791 AF371800.1 phylotype OTU-137 swine intestine clone p-2053-s959-5 prokMSA_id:61046 AF530352.1 Crohn adult fecal flora clone cadhufec18c11sav prokMSA_id:61076 AF530315.1 Crohn adult fecal flora clone cadhufec121h7 prokMSA_id:61094 AF530295.1 Crohn adult fecal flora clone cadhufec007h7 prokMSA_id:92937 AY343231.1 human feces clone REC6M_71 prokMSA_id:114105 AY916237.1 human descending colon biopsy clone MF23 prokMSA_id:114368 AY916203.1 human cecum biopsy clone LD59 2.21.4.1.1.1.4573 OTU 2 seqs prokMSA_id:15963 X71854.1 Clostridium termitidis prokMSA_id:15980 X71856.1 Clostridium cellobioparum 2.21.4.1.1.1.4574 OTU 6 seqs prokMSA_id:16189 U16166.1 Clostridium acetobutylicum prokMSA_id:16191 X78071.1 Clostridium acetobutylicum prokMSA_id:18375 AF270501.1 Clostridium felsineum str. NCIMB 10690 prokMSA_id:20598 AF270502.1 Clostridium felsineum str. DSM 794 prokMSA_id:46897 Y18172.1 Clostridium roseum str. DSM 6424 prokMSA_id:47394 NC_003030.1 Clostridium acetobutylicum ATCC 824 2.21.4.1.1.1.4575 OTU 5 seqs prokMSA_id:16178 X68316.1 Clostridium argentinense prokMSA_id:16179 X68317.1 Clostridium botulinum prokMSA_id:16182 X68451.1 Clostridium subterminale prokMSA_id:16183 X78074.1 Clostridium species prokMSA_id:39409 AF241843.1 Clostridium subterminale DSM 758 2.21.4.1.1.1.4576 OTU 24 seqs prokMSA_id:16206 M69264.1 Clostridium perfringens prokMSA_id:16210 Y12669.1 Clostridium perfringens str. antibiotic (Nitrofurantoin)-resistant prokMSA_id:18408 AF390549.1 Clostridium sp. str. AB&J prokMSA_id:26184 AF371845.1 phylotype OTU-371 swine intestine clone p-4636-2Wa2 prokMSA_id:46789 NC_003366.1 Clostridium perfringens str. 13 prokMSA_id:52947 AB045282.1 Clostridium perfringens str. 13 prokMSA_id:53902 AB045286.1 Clostridium perfringens str. 13 prokMSA_id:54029 AB045285.1 Clostridium perfringens str. 13 prokMSA_id:54412 AB045284.1 Clostridium perfringens str. 13 prokMSA_id:54675 AB045283.1 Clostridium perfringens str. 13 prokMSA_id:54809 AB045287.1 Clostridium perfringens str. 13 prokMSA_id:54834 AB045288.1 Clostridium perfringens str. 13 prokMSA_id:63982 AP003194.2 Clostridium perfringens str. 13 prokMSA_id:63983 AP003193.2 Clostridium perfringens str. 13 prokMSA_id:68917 AB045289.1 Clostridium perfringens str. 13 prokMSA_id:68918 AB045290.1 Clostridium perfringens str. 13 prokMSA_id:68919 AB045291.1 Clostridium perfringens str. 13 prokMSA_id:70420 AF018036.1 neolithic glacier mummy clone OI1612 prokMSA_id:73346 AB075767.1 Clostridium perfringens prokMSA_id:75452 AY167965.1 manure prokMSA_id:77120 AY167966.1 manure prokMSA_id:106923 AY581817.1 feces clone 1E2 prokMSA_id:107872 BA000016.3 Clostridium perfringens str. 13 prokMSA_id:110358 AY773139.1 swine manure biofilm developed sub-surface f constructed wetland 2.21.4.1.1.1.4582 OTU 6 seqs prokMSA_id:23250 AF371781.1 phylotype OTU-133 swine intestine clone p-2628-9F5 prokMSA_id:27984 AF371788.1 phylotype OTU-133 swine intestine clone p-882-a5 prokMSA_id:34464 AF371786.1 phylotype OTU-133 swine intestine clone p-2215-s959-3 prokMSA_id:44399 AF371783.1 phylotype OTU-133 swine intestine clone p-2600-9F5 prokMSA_id:45610 AF371787.1 phylotype OTU-133 swine intestine clone p-2179-s959-3 prokMSA_id:68839 AF371789.1 phylotype OTU-133 swine intestine clone p-1497-b5 2.21.4.1.1.1.4584 OTU 4 seqs prokMSA_id:15957 X71852.1 Clostridium papyrosolvens prokMSA_id:15961 AJ229250.1 Clostridium sp. str. FCB90-2 prokMSA_id:15962 Y15986.1 Clostridium sp. str. RCel1 prokMSA_id:109994 CR933129.1 municipal wastewater treatment plant clone 013B04_B_SD_P15 2.21.4.1.1.1.4587 OTU 1 seq prokMSA_id:16125 X68315.1 Clostridium botulinum type C 2.21.4.1.1.1.4588 OTU 8 seqs prokMSA_id:15984 AF001697.1 rumen clone RC4 prokMSA_id:15990 AF001733.1 rumen clone RC31 prokMSA_id:98930 AB185515.1 rumen clone F23-A12 prokMSA_id:99021 AB185600.1 rumen clone F24-C12 prokMSA_id:100371 AB185621.1 rumen clone F24-E10 prokMSA_id:103244 AB185592.1 rumen clone F24-C01 prokMSA_id:104112 AB185598.1 rumen clone F24-C09 prokMSA_id:110750 AY854352.1 herbivore gastrointestinal tract clone Thompsons73 2.21.4.1.1.1.4589 OTU 6 seqs prokMSA_id:16251 X77834.1 "Clostridium kainantoi" prokMSA_id:16253 AJ002592.1 Clostridium butyricum str. strain MW8 prokMSA_id:16255 X68176.1 Clostridium butyricum prokMSA_id:19926 AJ289706.1 Clostridium butyricum str. IBUN 64A prokMSA_id:21382 AJ289705.1 Clostridium butyricum str. IBUN 125C prokMSA_id:33631 AJ289704.1 Clostridium butyricum str. IBUN 22A 2.21.4.1.1.1.4590 OTU 2 seqs prokMSA_id:25889 Y18175.1 Clostridium sartagoforme str. DSM 1292 prokMSA_id:105443 AY542483.1 Swine manure pit isolate str. PPC78A 2.21.4.1.1.1.4591 OTU 2 seqs prokMSA_id:39555 AB034125.1 rumen clone 4C28d-4 prokMSA_id:46835 AF371799.1 phylotype OTU-260 swine intestine clone p-953-s962-5 2.21.4.1.1.1.4593 OTU 1 seq prokMSA_id:50712 AF371934.1 swine intestine clone p_5014-2Wa5 2.21.4.1.1.1.4594 OTU 1 seq prokMSA_id:44151 AF371804.1 phylotype OTU-240 swine intestine clone p-1487-b5 2.21.4.1.1.1.4598 OTU 20 seqs prokMSA_id:16213 X68174.1 Clostridium baratii prokMSA_id:16215 X75907.1 Clostridium paraputrificum prokMSA_id:16232 X68175.1 Clostridium baratii prokMSA_id:16234 X77842.1 Clostridium absonum prokMSA_id:16256 AF005092.1 Clostridium sp. str. SP3 prokMSA_id:16276 Y15984.1 Clostridium sp. str. RXyl1 prokMSA_id:31869 AB018185.1 nitritogenes str. JCM 6485 prokMSA_id:71927 AB075768.1 Clostridium butyricum str. ATCC 19398 prokMSA_id:74851 AB018183.1 budayi str. JCM 9989 prokMSA_id:92509 AY341243.1 Clostridium baratii prokMSA_id:93007 AY341242.1 Clostridium baratii prokMSA_id:100243 AB161367.1 Clostridium sardiniense str. DSM 2632 prokMSA_id:100402 AB161368.1 Clostridium sardiniense str. DSM 2632 prokMSA_id:100560 AB161369.1 Clostridium sardiniense str. DSM 599 prokMSA_id:103516 AY442812.1 Clostridium butyricum YE48 prokMSA_id:104245 AB161370.1 Clostridium sardiniense str. DSM 599 prokMSA_id:104406 AB161371.1 Clostridium sardiniense str. DSM 600 prokMSA_id:104559 AB161372.1 Clostridium sardiniense str. DSM 600 prokMSA_id:104711 AB161373.1 Clostridium sardiniense str. KZ 1544 prokMSA_id:104866 AB161374.1 Clostridium sardiniense str. KZ 1544 2.21.4.1.1.1.4599 OTU 1 seq prokMSA_id:36208 AJ229227.1 anoxic bulk soil flooded rice microcosm clone BSV83 2.21.4.1.1.1.4600 OTU 2 seqs prokMSA_id:30877 AJ229211.1 anoxic bulk soil flooded rice microcosm clone BSV62 clone prokMSA_id:74580 AJ229226.1 anoxic bulk soil flooded rice microcosm clone BSV82 clone 2.21.4.1.1.1.4605 OTU 2 seqs prokMSA_id:22883 AJ229192.1 anoxic bulk soil flooded rice microcosm clone BSV30 prokMSA_id:35019 AJ229191.1 anoxic bulk soil flooded rice microcosm clone BSV29 clone 2.21.4.1.1.1.4606 OTU 2 seqs prokMSA_id:16212 X68183.1 Clostridium aurantibutyricum prokMSA_id:16221 S46736.1 Clostridium aurantibutyricum 2.21.4.1.1.1.4607 OTU 7 seqs prokMSA_id:16120 X76744.1 Clostridium homopropionicum prokMSA_id:16121 X95274.1 Clostridium sp. str. LMG 16094 prokMSA_id:16123 X68188.1 Clostridium novyi type A prokMSA_id:16124 L37594.1 Clostridium novyi type A prokMSA_id:16127 L37591.1 Clostridium botulinum type D prokMSA_id:19010 AB041866.1 Clostridium novyi type A prokMSA_id:29673 AB045606.1 Clostridium novyi type A 2.21.4.1.1.1.4609 OTU 2 seqs prokMSA_id:16224 X71849.1 Clostridium cellulovorans prokMSA_id:16231 X73438.1 Clostridium cellulovorans 2.21.4.1.1.1.4610 OTU 14 seqs prokMSA_id:16204 X76650.1 Sarcina maxima prokMSA_id:32184 AF127024.1 Clostridium putrefaciens str. DSM 1291 prokMSA_id:37683 Y18177.1 Clostridium putrefaciens str. DSM 1291 prokMSA_id:41634 AF127023.1 Clostridium algidicarnis str. NCFB 2931 prokMSA_id:82617 AY244986.1 cow rumen clone BS35 prokMSA_id:82860 AY244982.1 cow rumen clone BS31 prokMSA_id:82928 AY244981.1 cow rumen clone BS30 prokMSA_id:83292 AY244988.1 cow rumen clone BS37 prokMSA_id:85204 AY244984.1 cow rumen clone BS33 prokMSA_id:85319 AY244977.1 cow rumen clone BS26 prokMSA_id:85792 AY244991.1 cow rumen clone BS40 prokMSA_id:85888 AY244978.1 cow rumen clone BS27 prokMSA_id:86108 AY244989.1 cow rumen clone BS38 prokMSA_id:86395 AY244980.1 cow rumen clone BS29 2.21.4.1.1.1.4614 OTU 1 seq prokMSA_id:81208 AB093546.1 Clostridium sp. str. JC3 2.21.4.1.1.1.4615 OTU 1 seq prokMSA_id:15955 L35517.1 Bacteroides cellulosolvens 2.21.4.1.1.1.4617 OTU 1 seq prokMSA_id:15956 AF050583.1 contaminated aquifer clone WCHA1-45 2.21.4.1.1.1.4619 OTU 1 seq prokMSA_id:20765 AF371768.1 phylotype OTU-337 swine intestine clone p-3275-A42 2.21.4.1.1.1.4620 OTU 1 seq prokMSA_id:51722 AF371805.1 phylotype OTU-140 swine intestine clone p-1877-s962-3 2.21.4.1.1.1.4622 OTU 1 seq prokMSA_id:81946 AB100475.1 termite gut clone Rs-L36 2.21.4.1.1.1.4624 OTU 1 seq prokMSA_id:21299 AJ408194.1 equine large intestine clone MW07 2.21.4.1.1.1.4626 OTU 1 seq prokMSA_id:16023 AF157051.1 ASF500 isolate str. ASF 500 2.21.4.1.1.1.4627 OTU 1 seq prokMSA_id:78007 AB089030.1 termite gut homogenate clone Rs-A13 bacterium 2.21.4.1.1.1.4629 OTU 1 seq prokMSA_id:34679 AF371841.1 phylotype OTU-156 swine intestine clone p-2171-s959-3 2.21.4.1.1.1.4630 OTU 1 seq prokMSA_id:17630 AJ408149.1 equine large intestine clone ML03 2.21.4.1.1.1.4631 OTU 1 seq prokMSA_id:42636 AF371826.1 phylotype OTU-149 swine intestine clone p-208-o5 2.21.4.1.1.1.4632 OTU 1 seq prokMSA_id:33877 AF429381.1 chicken intestinal s clone CCAJG114 2.21.4.1.1.1.4634 OTU 1 seq prokMSA_id:16027 AF001761.1 rumen clone RF29 2.21.4.1.1.1.4635 OTU 3 seqs prokMSA_id:16236 AJ245413.1 Clostridium tertium prokMSA_id:33186 AF227826.1 Clostridium sp. str. 75064 prokMSA_id:38488 Y18174.1 Clostridium tertium 2.21.4.1.1.1.4636 OTU 1 seq prokMSA_id:38025 AF401535.1 landfill clone g3S5 2.21.4.1.1.1.4637 OTU 1 seq prokMSA_id:81967 AB100473.1 termite gut clone Rs-088 2.21.4.1.1.1.4638 OTU 1 seq prokMSA_id:18935 AJ408137.1 equine large intestine clone DW12 2.21.4.1.1.1.4639 OTU 1 seq prokMSA_id:16030 U81762.2 anaerobic digestor clone vadinHA42 2.21.4.1.1.1.4641 OTU 1 seq prokMSA_id:39700 AF167711.1 Papillibacter cinnamivorans 2.21.4.1.1.1.4642 OTU 1 seq prokMSA_id:16106 X77838.1 Oxobacter pfennigii 2.21.4.1.1.1.4643 OTU 1 seq prokMSA_id:15969 X71846.1 Clostridium aldrichii 2.21.4.1.1.1.4644 OTU 1 seq prokMSA_id:16033 AF129862.1 anaerobic digestor clone CA26 2.21.4.1.1.1.4645 OTU 1 seq prokMSA_id:40164 AF371764.1 phylotype OTU-316 swine intestine clone p-1986-959-5 2.21.4.1.1.1.4647 OTU 1 seq prokMSA_id:16109 X90488.1 Caloramator proteoclasticus str. Uruguayensis 2.21.4.1.1.1.552 OTU 1 seq prokMSA_id:33448 AF113543.1 Thermohalobacter berrensis 2.21.4.1.1.1.645 OTU 1 seq prokMSA_id:52451 AB052397.1 Symbiobacterium sp. HN1 2.21.4.1.1.2 sf_1 3 seqs 2.21.4.1.1.2.4227 OTU 1 seq prokMSA_id:36705 AF371825.1 phylotype OTU-148 swine intestine clone p-52-a5 2.21.4.1.1.2.4314 OTU 2 seqs prokMSA_id:45031 AJ229206.1 anoxic bulk soil flooded rice microcosm clone BSV54 clone prokMSA_id:46414 AJ229194.1 anoxic bulk soil flooded rice microcosm clone BSV34 clone 2.21.4.1.1.3 sf_21 1 seq 2.21.4.1.1.3.4471 OTU 1 seq prokMSA_id:81882 AB100483.1 termite gut clone Rs-058 2.21.4.1.1.4 sf_4 1 seq 2.21.4.1.1.4.4423 OTU 1 seq prokMSA_id:16142 M23930.1 Clostridium pasteurianum 2.21.4.1.2 Eubacteriaceae 51 seqs 2.21.4.1.2.1 sf_1 51 seqs 2.21.4.1.2.1.1045 OTU 1 seq prokMSA_id:34061 AF371692.1 phylotype OTU-312 swine intestine clone p-3402-SwA2 2.21.4.1.2.1.1053 OTU 4 seqs prokMSA_id:20221 AB036761.1 Pseudoramibacter alactolyticus str. 9p-21 prokMSA_id:30675 AB036760.1 Pseudoramibacter alactolyticus str. 146-3 prokMSA_id:46867 AB036759.1 Pseudoramibacter alactolyticus str. 23263T prokMSA_id:70847 AF287778.1 human subgingival plaque clone CK057 2.21.4.1.2.1.1066 OTU 6 seqs prokMSA_id:14235 M59120.1 Eubacterium limosum prokMSA_id:14240 X96961.1 callanderi str. DSM 3662 prokMSA_id:14241 AF064241.1 Butyribacterium methylotrophicum prokMSA_id:14242 AF064242.1 limosum str. PM31 prokMSA_id:14243 U67159.1 limosum str. kist612 prokMSA_id:37240 AF427914.1 RFLP type 5; TCE-dechlorinating consortium ANAS I clone 9D 2.21.4.1.2.1.154 OTU 1 seq prokMSA_id:14257 X96959.1 Acetobacterium fimetarium str. DSM 8238 2.21.4.1.2.1.28 OTU 1 seq prokMSA_id:77821 AB088988.1 termite gut homogenate clone Rs-H81 bacterium 2.21.4.1.2.1.323 OTU 1 seq prokMSA_id:14237 X96954.1 Acetobacterium woodii str. DSM 1030 2.21.4.1.2.1.423 OTU 1 seq prokMSA_id:67841 AY082466.1 neutral pH mine biofilm clone 44a-B1-37 2.21.4.1.2.1.687 OTU 31 seqs prokMSA_id:14230 X96955.1 Acetobacterium wieringae str. DSM 1911 prokMSA_id:14232 X96957.1 Acetobacterium malicum str. DSM 4132 prokMSA_id:14233 X95232.1 deep subsurface clone Aspo4 prokMSA_id:14234 AF132739.1 Acetobacterium psammolithicum str. CN-E prokMSA_id:14255 X96956.1 Acetobacterium carbinolicum str. DSM 2925 prokMSA_id:27312 AY013610.1 sample taken beneath landfill clone BVA53 prokMSA_id:32798 AB030612.1 groundwater clone 1055 prokMSA_id:66182 AJ488081.1 chlorobenzene-degrading consortium clone IB-28 prokMSA_id:70260 AF479584.1 Acetobacterium sp. str. HAAP-1 prokMSA_id:75865 AB086092.1 Acetobacterium sp. str. TM20-2 prokMSA_id:77494 AJ535706.1 anaerobic enrichment clone A4 prokMSA_id:79093 AY185323.1 Acetobacterium sp. clone AKS29 prokMSA_id:79098 AY185319.1 Acetobacterium sp. clone AKS04 prokMSA_id:79162 AY185321.1 Acetobacterium sp. clone AKS17 prokMSA_id:79235 AY185311.1 Acetobacterium sp. clone ARC03 prokMSA_id:79278 AY185310.1 Acetobacterium sp. clone ARC01 prokMSA_id:79314 AY185312.1 Acetobacterium sp. clone ARC05 prokMSA_id:79459 AY185330.1 Acetobacterium sp. clone AKS70 prokMSA_id:79463 AY185326.1 Acetobacterium sp. clone AKS48 prokMSA_id:79515 AY185318.1 Acetobacterium sp. clone AKS02 prokMSA_id:79527 AY185327.1 Acetobacterium sp. clone AKS55 prokMSA_id:79549 AY185325.1 Acetobacterium sp. clone AKS42 prokMSA_id:79573 AY185315.1 Acetobacterium sp. clone ARC44 prokMSA_id:82262 AY214194.1 benzene-contaminated groundwater clone ZZ14C8 prokMSA_id:99280 AY485791.1 Acetobacterium submarinus str. LT18 prokMSA_id:102072 AY667261.1 TCE-dechlorinating groundwater clone TANB55 prokMSA_id:107733 AY744449.1 Acetobacterium halotolerans str. SyrA5 prokMSA_id:108419 AY570559.1 -temperature biodegraded Canadian oil reservoir clone PL-14B7 prokMSA_id:108430 AY570572.1 -temperature biodegraded Canadian oil reservoir clone PL-39B1 prokMSA_id:108478 AY570601.1 -temperature biodegraded Canadian oil reservoir clone PL-18B2 prokMSA_id:108488 AY570610.1 -temperature biodegraded Canadian oil reservoir clone PL-25B8 2.21.4.1.2.1.707 OTU 1 seq prokMSA_id:14231 X96960.1 Acetobacterium bakii str. DSM 8239 2.21.4.1.2.1.748 OTU 1 seq prokMSA_id:14253 AF073898.1 aggregans str. SR12; DSM 12183 2.21.4.1.2.1.764 OTU 2 seqs prokMSA_id:14249 X96958.1 Acetobacterium paludosum str. DSM 8237 prokMSA_id:28584 AJ297449.1 Acetobacterium tundrae str. DSM 9173 2.21.4.1.2.1.923 OTU 1 seq prokMSA_id:14252 M23927.1 Eubacterium barkeri 2.21.4.1.3 Heliobacteriaceae 3 seqs 2.21.4.1.3.1 sf_1 2 seqs 2.21.4.1.3.1.318 OTU 1 seq prokMSA_id:73860 AF249678.1 Heliobacterium sulfidophilum str. BR4 (T) 2.21.4.1.3.1.380 OTU 1 seq prokMSA_id:13923 M11212.1 Heliobacterium chlorum 2.21.4.1.3.2 sf_6 1 seq 2.21.4.1.3.2.383 OTU 1 seq prokMSA_id:13924 AF079102.1 Heliorestis daurensis str. BT-H1 2.21.4.1.4 Lachnospiraceae 780 seqs 2.21.4.1.4.1 sf_5 779 seqs 2.21.4.1.4.1.2660 OTU 1 seq prokMSA_id:13974 AF001724.1 rumen clone RC39 2.21.4.1.4.1.2661 OTU 1 seq prokMSA_id:13976 AB009185.1 rumen clone RFN27 bacterium 2.21.4.1.4.1.2662 OTU 1 seq prokMSA_id:39361 AF371938.1 phylotype OTU-379 swine intestine clone p-5278-2Wa3 2.21.4.1.4.1.2663 OTU 1 seq prokMSA_id:50530 AF371649.1 phylotype OTU-65 swine intestine clone p-2016-s959-5 2.21.4.1.4.1.2665 OTU 1 seq prokMSA_id:36892 AF371677.1 phylotype OTU-268 swine intestine clone p-2409-55G5 2.21.4.1.4.1.2668 OTU 1 seq prokMSA_id:77853 AB088998.1 termite gut homogenate clone Rs-G40 bacterium 2.21.4.1.4.1.2670 OTU 1 seq prokMSA_id:25534 AF371626.1 phylotype OTU-60 swine intestine clone p-2035-s959-5 2.21.4.1.4.1.2671 OTU 1 seq prokMSA_id:14100 U68616.1 Amazon clone M30 2.21.4.1.4.1.2673 OTU 1 seq prokMSA_id:71397 AF287771.1 human subgingival plaque clone AO068 2.21.4.1.4.1.2674 OTU 1 seq prokMSA_id:38374 AF132267.1 human gut clone adhufec382 2.21.4.1.4.1.2676 OTU 1 seq prokMSA_id:14069 AF028351.1 Clostridium indolis CM971 2.21.4.1.4.1.2681 OTU 1 seq prokMSA_id:78144 AB088974.1 termite gut homogenate clone Rs-K41 bacterium 2.21.4.1.4.1.2684 OTU 1 seq prokMSA_id:14101 AJ229234.1 Clostridium sp. str. XB90 2.21.4.1.4.1.2688 OTU 1 seq prokMSA_id:30215 AJ408183.1 equine large intestine clone ML37 2.21.4.1.4.1.2692 OTU 1 seq prokMSA_id:13981 AF018554.1 rumen fluid clone JW25 2.21.4.1.4.1.2693 OTU 8 seqs prokMSA_id:14081 AB008552.1 ruminantium str. GA195 prokMSA_id:31513 AB056166.1 ) prokMSA_id:31710 AB056163.1 ) prokMSA_id:31834 AB056168.1 ) prokMSA_id:34599 AB056162.1 ) prokMSA_id:36238 AB056164.1 ) prokMSA_id:39286 AB056167.1 ) prokMSA_id:48656 AB056165.1 ) 2.21.4.1.4.1.2698 OTU 1 seq prokMSA_id:77867 AB088950.1 termite gut homogenate clone Rs-B88 bacterium 2.21.4.1.4.1.2702 OTU 1 seq prokMSA_id:25469 AF132270.1 adult human fecal matter clone adhufec40 2.21.4.1.4.1.2703 OTU 1 seq prokMSA_id:16575 AJ408093.1 equine large intestine clone DL05 2.21.4.1.4.1.2706 OTU 1 seq prokMSA_id:14036 X73443.1 Clostridium nexile 2.21.4.1.4.1.2708 OTU 1 seq prokMSA_id:72606 AF275914.1 anaerobic digester clone AA02 2.21.4.1.4.1.2709 OTU 2 seqs prokMSA_id:33369 AJ270488.2 faeces isolate str. L2-12 prokMSA_id:113050 AY916314.1 human stool clone B065 2.21.4.1.4.1.2711 OTU 1 seq prokMSA_id:13984 AF018565.1 rumen fluid clone 12-128 2.21.4.1.4.1.2713 OTU 1 seq prokMSA_id:46733 AJ408128.1 equine large intestine clone DW03 2.21.4.1.4.1.2717 OTU 1 seq prokMSA_id:14098 AF153857.1 clone adhufec37.25 2.21.4.1.4.1.2719 OTU 1 seq prokMSA_id:46667 AF371643.1 phylotype OTU-62 swine intestine clone p-268-o5 2.21.4.1.4.1.2724 OTU 2 seqs prokMSA_id:22721 AF371580.1 phylotype OTU-69 swine intestine clone p-265-o5 prokMSA_id:47477 AF371581.1 phylotype OTU-69 swine intestine clone p-217-o5 2.21.4.1.4.1.2726 OTU 1 seq prokMSA_id:27488 AF371597.1 phylotype OTU-88 swine intestine clone p-1561-b5 2.21.4.1.4.1.2728 OTU 1 seq prokMSA_id:26279 AB062841.1 termite gut clone BCf8-25 2.21.4.1.4.1.2731 OTU 1 seq prokMSA_id:35993 AJ408059.1 equine large intestine clone CL25 2.21.4.1.4.1.2732 OTU 4 seqs prokMSA_id:20244 AJ270485.2 faeces isolate str. A2-175 prokMSA_id:28767 AF371662.1 phylotype OTU-94 swine intestine clone p-373-a3 prokMSA_id:33837 AF371661.1 phylotype OTU-94 swine intestine clone p-59-a5 prokMSA_id:54048 AF371663.1 phylotype OTU-94 swine intestine clone p-1676-b3 2.21.4.1.4.1.2733 OTU 1 seq prokMSA_id:77371 AF349421.1 pig feces clone 2.21.4.1.4.1.2735 OTU 1 seq prokMSA_id:32228 AF371637.1 phylotype OTU-105 swine intestine clone p-1529-b5 2.21.4.1.4.1.2737 OTU 1 seq prokMSA_id:14043 AF001754.1 rumen clone RF22 2.21.4.1.4.1.2739 OTU 2 seqs prokMSA_id:43305 AB034116.1 rumen clone 4C28d-13 prokMSA_id:51916 AB034115.1 rumen clone 4C28d-17 2.21.4.1.4.1.2740 OTU 2 seqs prokMSA_id:14093 AF157054.1 plexicaudatum str. ASF 492 prokMSA_id:14094 AF157058.1 plexicaudatum str. ATCC 27514 2.21.4.1.4.1.2741 OTU 1 seq prokMSA_id:14047 AF001716.1 rumen clone RC27 2.21.4.1.4.1.2742 OTU 1 seq prokMSA_id:14048 AB004910.1 Butyrivibrio fibrisolvens str. T63 Bovine rumen 2.21.4.1.4.1.2745 OTU 1 seq prokMSA_id:71649 AF385562.1 purified crevicular epithelial cells clone BS091 oral 2.21.4.1.4.1.2747 OTU 2 seqs prokMSA_id:34649 AF371559.1 phylotype OTU-278 swine intestine clone p-3075-SwA5 prokMSA_id:47954 AF132268.1 adult human fecal matter clone adhufec405 2.21.4.1.4.1.2748 OTU 1 seq prokMSA_id:35314 AJ408120.1 equine large intestine clone DL33 2.21.4.1.4.1.2749 OTU 1 seq prokMSA_id:50625 AJ408238.1 equine large intestine clone PL31 2.21.4.1.4.1.2753 OTU 5 seqs prokMSA_id:14025 AF052421.1 human fecal sample clone A54 prokMSA_id:26562 AF132245.1 adult human fecal matter clone adhufec217 prokMSA_id:29024 AB050853.1 clone GA21 prokMSA_id:43617 AJ408969.1 human colonic clone HuCA17 prokMSA_id:81160 AY169422.1 Clostridium clostridioforme 2.21.4.1.4.1.2754 OTU 1 seq prokMSA_id:77466 AF349420.1 pig feces clone 2.21.4.1.4.1.2756 OTU 7 seqs prokMSA_id:17208 AF132238.1 adult human fecal matter clone adhufec150 prokMSA_id:21408 AB034123.1 rumen clone 4C28d-8 prokMSA_id:29758 AJ408967.1 human colonic clone HuCA13 prokMSA_id:31554 AJ408979.1 human colonic clone HuCA28 prokMSA_id:103526 AY305310.1 butyrate-producing M72/1 prokMSA_id:109015 AY804149.1 Roseburia faecalis str. M6/1 prokMSA_id:109017 AY804150.1 Roseburia faecalis str. M88/1 2.21.4.1.4.1.2758 OTU 2 seqs prokMSA_id:29903 AF371586.1 phylotype OTU-54 swine intestine clone p-190-o5 prokMSA_id:34847 AF371585.1 phylotype OTU-54 swine intestine clone p-242-o5 2.21.4.1.4.1.2760 OTU 2 seqs prokMSA_id:42680 AF371641.1 phylotype OTU-62 swine intestine clone p-327-a3 prokMSA_id:72033 AF371642.1 phylotype OTU-62 swine intestine clone p-189-o5 2.21.4.1.4.1.2762 OTU 1 seq prokMSA_id:14125 AF087643.1 hindgut isolate str. PS7 2.21.4.1.4.1.2763 OTU 2 seqs prokMSA_id:14120 M99572.1 Epulopiscium species prokMSA_id:14121 AF067413.1 Epulopiscium fishelsoni str. Red Sea A1 2.21.4.1.4.1.2765 OTU 1 seq prokMSA_id:78278 AB088996.1 termite gut homogenate clone Rs-Q35 bacterium 2.21.4.1.4.1.2769 OTU 4 seqs prokMSA_id:36592 AJ408250.1 equine large intestine clone PW0$ prokMSA_id:37099 AJ408198.1 equine large intestine clone MW11 prokMSA_id:40098 AJ408244.1 equine large intestine clone PL37 prokMSA_id:52617 AJ408073.1 equine large intestine clone CW03 2.21.4.1.4.1.2770 OTU 2 seqs prokMSA_id:38358 AB034110.1 rumen clone 3C28d-6 prokMSA_id:45716 AB034111.1 rumen clone 4C28d-22 2.21.4.1.4.1.2771 OTU 5 seqs prokMSA_id:16944 AJ270487.2 Anaerostipes caccae str. L1-92 prokMSA_id:31621 AF149884.2 methanogenic reactor; related genus spore-forming; glucose and hydrogen; ferments lactate to butyrate using acetate as electron acceptor clone EO-II; 08.96.4 prokMSA_id:48557 AF275915.1 anaerobic digester clone AA04 prokMSA_id:74649 AF332714.1 granular sludge clone UASB_brew_B16 prokMSA_id:104062 AJ315982.1 Ruminococcus sp. str. 5 2.21.4.1.4.1.2774 OTU 1 seq prokMSA_id:14041 AF001695.1 rumen clone RC32 2.21.4.1.4.1.2777 OTU 13 seqs prokMSA_id:27628 AJ408964.1 clone HuCA8 prokMSA_id:39012 AJ409004.1 human colonic clone HuCB37 prokMSA_id:70219 AJ270474.2 faeces isolate str. L1-83 prokMSA_id:91132 AY338296.1 human feces clone BREC_68 prokMSA_id:91209 AY338298.1 human feces clone BREC_7 prokMSA_id:91289 AY338325.1 human feces clone BREC_5 prokMSA_id:91333 AY338327.1 human feces clone BREC_31 prokMSA_id:91345 AY338328.1 human feces clone BREC_76 prokMSA_id:91590 AY338324.1 human feces clone BREC_65 prokMSA_id:91785 AY338295.1 human feces clone BREC_42 prokMSA_id:91814 AY338326.1 human feces clone BREC_91 prokMSA_id:91835 AY338331.1 human feces clone BREC_24 prokMSA_id:99571 AJ270473.3 faeces isolate str. A2-194 2.21.4.1.4.1.2779 OTU 2 seqs prokMSA_id:21714 AJ408192.1 equine large intestine clone MW05 prokMSA_id:38154 AJ408092.1 equine large intestine clone DL04 2.21.4.1.4.1.2781 OTU 4 seqs prokMSA_id:23274 AB034119.1 rumen clone 2C28d-6 prokMSA_id:34221 AB034118.1 rumen clone 2C28d-12 prokMSA_id:34495 AB034117.1 rumen clone 2C28d-1 prokMSA_id:54674 AB034120.1 rumen clone 2C28d-5 2.21.4.1.4.1.2784 OTU 4 seqs prokMSA_id:18687 AF371542.1 phylotype OTU-84 swine intestine clone p-2000-s959-5 prokMSA_id:43588 AJ408993.1 human colonic clone HuCB12 prokMSA_id:99731 AY305321.1 butyrate-producing SR1/1 prokMSA_id:99891 AY305322.1 butyrate-producing SR1/5 2.21.4.1.4.1.2787 OTU 1 seq prokMSA_id:13936 AF001700.1 rumen clone RC7 2.21.4.1.4.1.2793 OTU 1 seq prokMSA_id:71434 AF357572.1 mpn-isolate group 24 2.21.4.1.4.1.2798 OTU 2 seqs prokMSA_id:13995 X94965.1 Ruminococcus schinkii str. B; CIP 105464; DSM 10518 prokMSA_id:13996 X94964.1 Ruminococcus schinkii str. Bie 41 2.21.4.1.4.1.2799 OTU 6 seqs prokMSA_id:23277 AF396924.1 sp. str. C124b prokMSA_id:24050 AF396923.1 sp. str. C12b prokMSA_id:35683 AF298662.1 Lachnobacterium bovis str. LRC 5357 prokMSA_id:36354 AF298665.1 Lachnobacterium bovis str. LRC 5436 prokMSA_id:37865 AF298663.1 Lachnobacterium bovis str. LRC 5382; ATCC BAA-151 prokMSA_id:52262 AF298664.1 Lachnobacterium bovis str. LRC 5405 2.21.4.1.4.1.2801 OTU 1 seq prokMSA_id:81139 AY169412.1 Butyrivibrio fibrisolvens 2.21.4.1.4.1.2802 OTU 1 seq prokMSA_id:71965 AF371545.1 phylotype OTU-246 swine intestine clone p-2624-9F5 2.21.4.1.4.1.2803 OTU 1 seq prokMSA_id:54116 AF371552.1 phylotype OTU-229 swine intestine clone p-2432-55G5 2.21.4.1.4.1.2804 OTU 2 seqs prokMSA_id:13971 Y10030.1 Clostridium sp. str. DR7 prokMSA_id:103489 AY353957.1 Clostridium amygdalinum str. BR-10 2.21.4.1.4.1.2806 OTU 1 seq prokMSA_id:36330 AF371561.1 phylotype OTU-74 swine intestine clone p-195-o5 2.21.4.1.4.1.2808 OTU 4 seqs prokMSA_id:13979 M59089.1 Clostridium clostridiiformes prokMSA_id:13985 Y10028.1 Clostridium sp. str. DR6A prokMSA_id:13986 AJ002591.1 Clostridium sp. str. DSM 10643 Lip1 prokMSA_id:83226 AJ508452.1 Clostridium bolteae str. 16351 2.21.4.1.4.1.2809 OTU 1 seq prokMSA_id:18550 AB056647.1 fiber rumen clone AAB6 2.21.4.1.4.1.2810 OTU 1 seq prokMSA_id:25842 AF371666.1 phylotype OTU-101 swine intestine clone p-204-o5 2.21.4.1.4.1.2812 OTU 1 seq prokMSA_id:28175 AB062774.1 termite gut homogenate clone BCf1-20 2.21.4.1.4.1.2814 OTU 3 seqs prokMSA_id:36059 AJ408980.1 human colonic clone HuCA29 prokMSA_id:44776 AF132260.1 adult human fecal matter clone adhufec310 prokMSA_id:69909 AJ011522.1 ramulus Human gut 2.21.4.1.4.1.2815 OTU 3 seqs prokMSA_id:44493 AF399956.1 Shuttleworthia satelles str. VPI D143K-13 prokMSA_id:70087 AF385570.1 purified crevicular epithelial cells clone EH006 prokMSA_id:73645 AF385507.1 healthy and subjects with halitosis clone DN050 oral 2.21.4.1.4.1.2817 OTU 1 seq prokMSA_id:20690 AB056635.1 fiber rumen clone AAB19 2.21.4.1.4.1.2818 OTU 1 seq prokMSA_id:46103 AJ408975.1 human colonic clone HuCA23 2.21.4.1.4.1.2819 OTU 1 seq prokMSA_id:49372 AJ408150.1 equine large intestine clone ML04 2.21.4.1.4.1.2821 OTU 1 seq prokMSA_id:43700 AB062773.1 termite gut homogenate clone BCf1-16 2.21.4.1.4.1.2823 OTU 1 seq prokMSA_id:45306 AJ400261.1 Large intestine clone L11-5 2.21.4.1.4.1.2825 OTU 1 seq prokMSA_id:14049 AF105403.1 Butyrivibrio fibrisolvens str. LP1265 2.21.4.1.4.1.2826 OTU 1 seq prokMSA_id:22371 AF371633.1 phylotype OTU-61 swine intestine clone p-2186-s959-3 2.21.4.1.4.1.2827 OTU 1 seq prokMSA_id:48583 AF385556.1 purified crevicular epithelial cells clone BR063 oral 2.21.4.1.4.1.2828 OTU 1 seq prokMSA_id:29205 AF371582.1 phylotype OTU-70 swine intestine clone p-57-a5 2.21.4.1.4.1.2830 OTU 1 seq prokMSA_id:25934 AF132278.1 adult human fecal matter clone adhufec68 2.21.4.1.4.1.2833 OTU 1 seq prokMSA_id:21868 AJ408107.1 equine large intestine clone DL20 2.21.4.1.4.1.2834 OTU 5 seqs prokMSA_id:14058 U41169.1 Butyrivibrio fibrisolvens prokMSA_id:14059 U41168.1 Butyrivibrio fibrisolvens prokMSA_id:14066 U41171.1 Butyrivibrio fibrisolvens prokMSA_id:14067 U41170.1 Butyrivibrio fibrisolvens prokMSA_id:52841 AF349660.1 Butyrivibrio fibrisolvens str. OB146 2.21.4.1.4.1.2835 OTU 1 seq prokMSA_id:48871 AJ408083.1 equine large intestine clone CW14 2.21.4.1.4.1.2837 OTU 1 seq prokMSA_id:22599 AF385557.1 purified crevicular epithelial cells clone BR088 oral 2.21.4.1.4.1.2839 OTU 1 seq prokMSA_id:51880 AJ400256.2 large intestine clone L10-4 2.21.4.1.4.1.2840 OTU 1 seq prokMSA_id:39770 AJ400250.1 Large intestine clone L7-6 2.21.4.1.4.1.2841 OTU 1 seq prokMSA_id:70254 AF371639.1 phylotype OTU-92 swine intestine clone p-50-a5 2.21.4.1.4.1.2842 OTU 1 seq prokMSA_id:25210 AF371565.1 phylotype OTU-87 swine intestine clone p-2489-18B5 2.21.4.1.4.1.2844 OTU 7 seqs prokMSA_id:14046 X95893.1 Pseudobutyrivibrio ruminis prokMSA_id:14061 X89980.1 Butyrivibrio fibrisolvens prokMSA_id:14062 AB009190.1 rumen clone RFN34 bacterium prokMSA_id:14065 U77338.1 Butyrivibrio fibrisolvens str. CF3 prokMSA_id:19835 AF202260.1 Pseudobutyrivibrio ruminis str. pC-XS2 prokMSA_id:36852 AF264034.1 Butyrivibrio cf. fibrisolvens EAT6 prokMSA_id:74850 AF202261.1 Pseudobutyrivibrio ruminis str. pC-XS6 2.21.4.1.4.1.2849 OTU 6 seqs prokMSA_id:13934 AF125902.1 Butyrivibrio fibrisolvens str. H17c(SA) prokMSA_id:13949 X89975.1 Butyrivibrio fibrisolvens prokMSA_id:13952 U77341.1 Butyrivibrio fibrisolvens str. OB251 prokMSA_id:48290 AF349662.1 Butyrivibrio fibrisolvens str. OB247 prokMSA_id:48412 AF349661.1 Butyrivibrio fibrisolvens str. OB237 prokMSA_id:74571 AF349663.1 Butyrivibrio fibrisolvens str. OB249 2.21.4.1.4.1.2851 OTU 1 seq prokMSA_id:28702 AF371672.1 phylotype OTU-270 swine intestine clone p-322-a3 2.21.4.1.4.1.2853 OTU 1 seq prokMSA_id:28275 AJ408050.1 equine large intestine clone CL15 2.21.4.1.4.1.2856 OTU 1 seq prokMSA_id:30622 AF371634.1 phylotype OTU-179 swine intestine clone p-1817-c3 2.21.4.1.4.1.2857 OTU 1 seq prokMSA_id:47001 AJ408177.1 equine large intestine clone ML31 2.21.4.1.4.1.2860 OTU 1 seq prokMSA_id:46138 AJ408145.1 equine large intestine clone DW20 2.21.4.1.4.1.2861 OTU 1 seq prokMSA_id:21881 AF371573.1 phylotype OTU-71 swine intestine clone p-1616-c5 2.21.4.1.4.1.2862 OTU 1 seq prokMSA_id:13939 AF001728.1 rumen clone RCP17 2.21.4.1.4.1.2868 OTU 1 seq prokMSA_id:51036 AJ408084.1 equine large intestine clone CW15 2.21.4.1.4.1.2870 OTU 1 seq prokMSA_id:37397 AJ408146.1 equine large intestine clone DW21 2.21.4.1.4.1.2871 OTU 1 seq prokMSA_id:21065 AJ408158.1 equine large intestine clone ML12 2.21.4.1.4.1.2872 OTU 1 seq prokMSA_id:30895 AB050852.1 clone GA36 2.21.4.1.4.1.2873 OTU 1 seq prokMSA_id:30968 AB034055.1 rumen clone 6C3d-13 2.21.4.1.4.1.2874 OTU 1 seq prokMSA_id:50166 AF371583.1 phylotype OTU-215 swine intestine clone p-389-o3 2.21.4.1.4.1.2877 OTU 1 seq prokMSA_id:13988 X71860.1 Eubacterium cellulosolvens 2.21.4.1.4.1.2878 OTU 1 seq prokMSA_id:13940 AF001772.1 rumen clone RFP4 2.21.4.1.4.1.2879 OTU 1 seq prokMSA_id:13941 AF018545.1 rumen fluid clone JW5 2.21.4.1.4.1.2881 OTU 1 seq prokMSA_id:13942 AF018556.1 rumen fluid clone JW28 2.21.4.1.4.1.2882 OTU 3 seqs prokMSA_id:14085 AF052416.1 human fecal sample clone A19 prokMSA_id:26113 AF153856.1 clone adhufec46.25 prokMSA_id:35020 AF132241.1 adult human fecal matter clone adhufec157 2.21.4.1.4.1.2883 OTU 2 seqs prokMSA_id:28901 AB034056.1 rumen clone 4C3d-8 prokMSA_id:104740 AB185542.1 rumen clone F23-D11 2.21.4.1.4.1.2884 OTU 1 seq prokMSA_id:37723 AB034052.1 rumen clone 3C3d-17 2.21.4.1.4.1.2886 OTU 1 seq prokMSA_id:13943 AF018566.1 rumen fluid clone 30-2 2.21.4.1.4.1.2887 OTU 1 seq prokMSA_id:29564 AF132264.1 adult human fecal matter clone adhufec363 2.21.4.1.4.1.2888 OTU 1 seq prokMSA_id:13945 X89971.1 Butyrivibrio fibrisolvens 2.21.4.1.4.1.2890 OTU 1 seq prokMSA_id:13947 X89973.1 Butyrivibrio fibrisolvens 2.21.4.1.4.1.2891 OTU 1 seq prokMSA_id:49916 AF371941.1 phylotype OTU-386 swine intestine clone p-4459-6Wb3 2.21.4.1.4.1.2893 OTU 13 seqs prokMSA_id:13989 X85101.1 Ruminococcus obeum prokMSA_id:13993 L76601.1 Ruminococcus obeum prokMSA_id:38418 AF371544.1 phylotype OTU-83 swine intestine clone p-60-a5 prokMSA_id:40507 AF371543.1 phylotype OTU-83 swine intestine clone p-1977-s962-5 prokMSA_id:58011 AB094165.1 feces adult human clone C-86 prokMSA_id:61089 AF530301.1 Crohn adult fecal flora clone cadhufec028h7 prokMSA_id:73388 AF357567.1 mpn-isolate group 19 prokMSA_id:81645 AY169411.1 Ruminococcus obeum prokMSA_id:92205 AY343314.1 human feces clone DONOR_30 prokMSA_id:92538 AY343315.1 human feces clone DONOR_31 prokMSA_id:92961 AY343250.1 human feces clone DONOR_81 prokMSA_id:97679 AY239462.1 Clostridium sp. cTPY-17 prokMSA_id:114154 AY916138.1 human transverse colon biopsy clone KS90 2.21.4.1.4.1.2894 OTU 1 seq prokMSA_id:19873 AF371570.1 phylotype OTU-259 swine intestine clone p-416-o3 2.21.4.1.4.1.2895 OTU 1 seq prokMSA_id:17263 AJ408125.1 equine large intestine clone DL38 2.21.4.1.4.1.2897 OTU 1 seq prokMSA_id:52780 AJ408126.1 equine large intestine clone DW01 2.21.4.1.4.1.2899 OTU 1 seq prokMSA_id:18024 AJ408191.1 equine large intestine clone MW04 2.21.4.1.4.1.2901 OTU 1 seq prokMSA_id:72420 AF132274.1 adult human fecal matter clone adhufec52 2.21.4.1.4.1.2902 OTU 2 seqs prokMSA_id:38415 AJ400271.1 Large intestine clone L10-9 prokMSA_id:45623 AJ400265.2 Large intestine clone L10-2 2.21.4.1.4.1.2903 OTU 1 seq prokMSA_id:13992 AF153853.1 faecal clone adhufec35.25 2.21.4.1.4.1.2904 OTU 1 seq prokMSA_id:34139 AF371678.1 phylotype OTU-295 swine intestine clone p-1573-b5 2.21.4.1.4.1.2905 OTU 1 seq prokMSA_id:13997 X95624.1 Ruminococcus hydrogenotrophicus str. S5a36 2.21.4.1.4.1.2906 OTU 1 seq prokMSA_id:13998 AF001692.1 rumen clone RC25 2.21.4.1.4.1.2909 OTU 1 seq prokMSA_id:24372 AJ408263.1 equine large intestine clone PW17 2.21.4.1.4.1.2911 OTU 1 seq prokMSA_id:22771 AF371554.1 phylotype OTU-75 swine intestine clone p-214-o5 2.21.4.1.4.1.2914 OTU 2 seqs prokMSA_id:27728 AJ408209.1 equine large intestine clone PL01 prokMSA_id:105358 AB185775.1 rumen clone U29-D04 2.21.4.1.4.1.2919 OTU 1 seq prokMSA_id:28914 AF371611.1 phylotype OTU-52 swine intestine clone p-2418-55G5 2.21.4.1.4.1.2920 OTU 1 seq prokMSA_id:48088 AF371553.1 phylotype OTU-330 swine intestine clone p-3663-18B3 2.21.4.1.4.1.2921 OTU 1 seq prokMSA_id:78382 AB088957.1 termite gut homogenate clone Rs-K95 bacterium 2.21.4.1.4.1.2922 OTU 1 seq prokMSA_id:50432 AB054173.1 gram-positive clone HOC39 2.21.4.1.4.1.2928 OTU 1 seq prokMSA_id:77537 AF349417.1 pig feces clone 2.21.4.1.4.1.2929 OTU 2 seqs prokMSA_id:85225 AF499908.1 human colonic mucosal biopsy clone ABLCf20 prokMSA_id:112852 AY916380.1 human stool clone D692 2.21.4.1.4.1.2931 OTU 2 seqs prokMSA_id:77584 AB088994.1 termite gut homogenate clone Rs-G77 bacterium prokMSA_id:81579 AB100464.1 termite gut clone Rs-L40 2.21.4.1.4.1.2937 OTU 1 seq prokMSA_id:52321 AF371541.1 phylotype OTU-253 swine intestine clone p-2482-18B5 2.21.4.1.4.1.2938 OTU 1 seq prokMSA_id:32727 AF371667.1 phylotype OTU-102 swine intestine clone p-1612-c5 2.21.4.1.4.1.2939 OTU 1 seq prokMSA_id:20421 AF371657.1 phylotype OTU-292 swine intestine clone p-444-o3 2.21.4.1.4.1.2941 OTU 1 seq prokMSA_id:41178 AF371674.1 phylotype OTU-106 swine intestine clone p-211-o5 2.21.4.1.4.1.2942 OTU 1 seq prokMSA_id:14126 U22331.1 "Metabacterium polyspora" 2.21.4.1.4.1.2943 OTU 1 seq prokMSA_id:62513 AF527773.1 human thigh wound isolate str. MDA2477 2.21.4.1.4.1.2944 OTU 1 seq prokMSA_id:14127 U22332.1 "Metabacterium polyspora" 2.21.4.1.4.1.2947 OTU 2 seqs prokMSA_id:47862 AF371654.1 phylotype OTU-96 swine intestine clone p-600-a5 prokMSA_id:68840 AF371653.1 phylotype OTU-96 swine intestine clone p-339-a3 2.21.4.1.4.1.2948 OTU 1 seq prokMSA_id:14128 M99574.1 Epulopiscium species 2.21.4.1.4.1.2949 OTU 1 seq prokMSA_id:16475 AJ408999.1 human colonic clone HuCB25 2.21.4.1.4.1.2951 OTU 1 seq prokMSA_id:14129 M99573.1 Epulopiscium species 2.21.4.1.4.1.2952 OTU 1 seq prokMSA_id:72430 AJ270480.2 faeces isolate str. L1-81 2.21.4.1.4.1.2953 OTU 1 seq prokMSA_id:30190 AJ408186.1 equine large intestine clone ML40 2.21.4.1.4.1.2955 OTU 1 seq prokMSA_id:71824 AF253375.1 intestine newborn human infant clone L127dB 2.21.4.1.4.1.2957 OTU 1 seq prokMSA_id:22899 AJ133124.1 Ruminococcus luti str. bln9 2.21.4.1.4.1.2958 OTU 1 seq prokMSA_id:20288 AJ408167.1 equine large intestine clone ML21 2.21.4.1.4.1.2959 OTU 1 seq prokMSA_id:52043 AB034114.1 rumen clone 3C28d-5 2.21.4.1.4.1.2960 OTU 1 seq prokMSA_id:46494 AB062805.1 termite gut homogenate clone BCf10-10 2.21.4.1.4.1.2961 OTU 1 seq prokMSA_id:77702 AB088989.1 termite gut homogenate clone Rs-F92 bacterium 2.21.4.1.4.1.2963 OTU 1 seq prokMSA_id:33245 AF148533.1 anaerobic fix bed reactor isolate str. TMB 39 2.21.4.1.4.1.2964 OTU 1 seq prokMSA_id:49154 AJ289215.1 2.21.4.1.4.1.2965 OTU 1 seq prokMSA_id:68343 AF481221.1 E4 clone MCE9_173 2.21.4.1.4.1.2966 OTU 3 seqs prokMSA_id:20886 AJ408039.1 equine large intestine clone CL04 prokMSA_id:23089 AJ408078.1 equine large intestine clone CW08 prokMSA_id:29915 AJ408131.1 equine large intestine clone DW06 2.21.4.1.4.1.2967 OTU 1 seq prokMSA_id:31573 AF371680.1 phylotype OTU-356 swine intestine clone p-4496-6Wb3 2.21.4.1.4.1.2968 OTU 1 seq prokMSA_id:43159 AF371599.1 phylotype OTU-32 swine intestine clone p-1512-b5 2.21.4.1.4.1.2969 OTU 1 seq prokMSA_id:49088 AF132250.1 adult human fecal matter clone adhufec236 2.21.4.1.4.1.2971 OTU 1 seq prokMSA_id:14010 X87152.1 Johnsonella ignava 2.21.4.1.4.1.2973 OTU 1 seq prokMSA_id:50377 AF427938.1 RFLP type 3; TCE-dechlorinating consortium ANAS II clone 6A 2.21.4.1.4.1.2974 OTU 1 seq prokMSA_id:14013 AB009173.1 rumen clone RFN14 bacterium 2.21.4.1.4.1.2975 OTU 1 seq prokMSA_id:14015 AF153858.1 faecal clone adhufec80.25 2.21.4.1.4.1.2976 OTU 1 seq prokMSA_id:13933 U37378.1 "Clostridium nakupumuans" 2.21.4.1.4.1.2979 OTU 1 seq prokMSA_id:77642 AB088995.1 termite gut homogenate clone Rs-A79 bacterium 2.21.4.1.4.1.2980 OTU 1 seq prokMSA_id:41673 AF371605.1 phylotype OTU-49 swine intestine clone p-2176-s959-3 2.21.4.1.4.1.2981 OTU 1 seq prokMSA_id:14016 M59109.1 Clostridium oroticum 2.21.4.1.4.1.2986 OTU 1 seq prokMSA_id:39350 AF371571.1 phylotype OTU-296 swine intestine clone p-2168-959-3 2.21.4.1.4.1.2991 OTU 2 seqs prokMSA_id:72301 AB034063.1 rumen clone 3C3d-8 prokMSA_id:73371 AB034064.1 rumen clone 4C3d-14 2.21.4.1.4.1.2994 OTU 1 seq prokMSA_id:81051 AB100463.1 termite gut clone Rs-L15 2.21.4.1.4.1.2995 OTU 1 seq prokMSA_id:50499 AF371579.1 phylotype OTU-343 swine intestine clone p-4162-6Wa5 2.21.4.1.4.1.2997 OTU 1 seq prokMSA_id:45915 AB056640.1 fiber rumen clone AAB24 2.21.4.1.4.1.2998 OTU 1 seq prokMSA_id:17500 AJ408215.1 equine large intestine clone PL07 2.21.4.1.4.1.2999 OTU 1 seq prokMSA_id:34413 AF371635.1 phylotype OTU-7 swine intestine clone p-2182-959-3 2.21.4.1.4.1.3000 OTU 1 seq prokMSA_id:110723 AJ518873.1 Lachnobacterium sp. str. wal 14165 2.21.4.1.4.1.3001 OTU 4 seqs prokMSA_id:53144 AF153862.1 clone adhufec71.25 prokMSA_id:72481 AJ408972.1 human colonic clone HuCA20 prokMSA_id:99579 AY305320.1 butyrate-producing SSC/2 prokMSA_id:104884 AY305319.1 butyrate-producing SS2/1 2.21.4.1.4.1.3007 OTU 1 seq prokMSA_id:40482 AF446130.1 Clostridiaceae str. LEMV78 2.21.4.1.4.1.3011 OTU 1 seq prokMSA_id:14130 AF067414.1 Epulopiscium fishelsoni str. Red Sea A2 2.21.4.1.4.1.3013 OTU 1 seq prokMSA_id:14060 AF018549.1 rumen fluid clone JW18 2.21.4.1.4.1.3016 OTU 4 seqs prokMSA_id:14076 L34420.1 Eubacterium eligens prokMSA_id:21126 AJ408985.1 human colonic clone HuCA40 prokMSA_id:51050 AF132285.1 adult human fecal matter clone adhufec85 prokMSA_id:91803 AY338355.1 human feces clone BREC_37 2.21.4.1.4.1.3017 OTU 1 seq prokMSA_id:78204 AB088993.1 termite gut homogenate clone Rs-D48 bacterium 2.21.4.1.4.1.3022 OTU 1 seq prokMSA_id:23653 AJ229214.1 anoxic bulk soil flooded rice microcosm clone BSV70 clone 2.21.4.1.4.1.3028 OTU 3 seqs prokMSA_id:14012 L76604.1 Ruminococcus torques prokMSA_id:38313 AJ408992.1 human colonic clone HuCB10 prokMSA_id:106049 AY452007.1 human intestine clone Muc3-18 2.21.4.1.4.1.3032 OTU 3 seqs prokMSA_id:24781 AJ409005.1 human colonic clone HuCB40 prokMSA_id:33850 AF132269.1 adult human fecal matter clone adhufec406 prokMSA_id:49141 AF371568.1 phylotype OTU-91 swine intestine clone p-355-a3 2.21.4.1.4.1.3033 OTU 8 seqs prokMSA_id:17859 AJ315482.1 isolate HuCC15 clone prokMSA_id:27613 AJ409000.1 human colonic clone HuCB26 prokMSA_id:28879 AJ408968.1 human colonic clone HuCA15 prokMSA_id:29597 AF052409.2 derived human fecal sample clone A07 prokMSA_id:52410 AF371658.1 phylotype OTU-235 swine intestine clone p-2001-s959-5 prokMSA_id:70163 AJ270490.2 faeces isolate str. L2-7 prokMSA_id:104577 AY305317.1 butyrate-producing SL6/1/1 prokMSA_id:104727 AY305318.1 butyrate-producing SM6/1 2.21.4.1.4.1.3035 OTU 1 seq prokMSA_id:14092 AF018553.1 rumen fluid clone JW24 2.21.4.1.4.1.3036 OTU 1 seq prokMSA_id:77653 AB088990.1 termite gut homogenate clone Rs-F27 bacterium 2.21.4.1.4.1.3037 OTU 1 seq prokMSA_id:30277 AJ408162.1 equine large intestine clone ML16 2.21.4.1.4.1.3038 OTU 1 seq prokMSA_id:68841 AF371648.1 phylotype OTU-64 swine intestine clone p-1594-c5 2.21.4.1.4.1.3042 OTU 1 seq prokMSA_id:68844 AF371584.1 phylotype OTU-237 swine intestine clone p-2876-6C5 2.21.4.1.4.1.3045 OTU 1 seq prokMSA_id:28218 AJ408961.1 human colonic clone HuCA5 2.21.4.1.4.1.3046 OTU 1 seq prokMSA_id:41850 AJ408104.1 equine large intestine clone DL17 2.21.4.1.4.1.3047 OTU 1 seq prokMSA_id:33906 AJ408977.1 human colonic clone HuCA26 2.21.4.1.4.1.3048 OTU 1 seq prokMSA_id:33833 AF371673.1 phylotype OTU-293 swine intestine clone p-1321-a5 2.21.4.1.4.1.3058 OTU 1 seq prokMSA_id:29965 AJ428552.1 Clostridium proteoclasticum str. UC 142 2.21.4.1.4.1.3059 OTU 21 seqs prokMSA_id:14040 U41167.1 Butyrivibrio fibrisolvens prokMSA_id:14042 AF001704.1 rumen clone RC13 prokMSA_id:14044 X89977.1 Butyrivibrio fibrisolvens prokMSA_id:14045 U77339.1 Butyrivibrio fibrisolvens str. H10b prokMSA_id:14050 X89978.1 Butyrivibrio fibrisolvens prokMSA_id:14051 AF125217.1 Butyrivibrio fibrisolvens str. B835 prokMSA_id:14052 AB003392.1 Butyrivibrio sp. str. sp45 prokMSA_id:14053 AB003393.1 Butyrivibrio sp. str. sp42 prokMSA_id:14054 U77337.1 Butyrivibrio fibrisolvens str. AR27 prokMSA_id:14055 U77340.1 Butyrivibrio fibrisolvens str. OB236 prokMSA_id:14056 U77342.1 Butyrivibrio fibrisolvens str. OR35 prokMSA_id:14057 U77343.1 Butyrivibrio fibrisolvens str. OR79 prokMSA_id:14063 X89979.1 Butyrivibrio fibrisolvens prokMSA_id:18666 AJ428549.1 Pseudobutyrivibrio ruminis str. JK 626 prokMSA_id:21769 AJ428550.1 Pseudobutyrivibrio xylanivorans str. JK 23/2 prokMSA_id:23954 AB034066.1 rumen clone 4C3d-11 prokMSA_id:36497 AJ428548.1 Pseudobutyrivibrio xylanivorans str. Mz 5 prokMSA_id:42103 AB034067.1 rumen clone 4C3d-7 prokMSA_id:42110 AJ270493.1 Butyrivibrio fibrisolvens str. 1.230 prokMSA_id:45953 AJ250365.2 Butyrivibrio fibrisolvens str. 16.4 human feaces prokMSA_id:70650 AY029616.1 Butyrivibrio fibrisolvens str. JL5 2.21.4.1.4.1.3060 OTU 1 seq prokMSA_id:77862 AB089002.1 termite gut homogenate clone Rs-B14 bacterium 2.21.4.1.4.1.3061 OTU 1 seq prokMSA_id:40124 AJ270491.2 faeces isolate str. L2-50 2.21.4.1.4.1.3062 OTU 1 seq prokMSA_id:50757 AF371671.1 phylotype OTU-306 swine intestine clone p-3181-SwA3 2.21.4.1.4.1.3063 OTU 1 seq prokMSA_id:52289 AF092549.1 Clostridium algidixylanolyticum str. SPL73 2.21.4.1.4.1.3064 OTU 1 seq prokMSA_id:32108 AJ408047.1 equine large intestine clone CL12 2.21.4.1.4.1.3065 OTU 2 seqs prokMSA_id:25317 Y18191.1 Syntrophococcus sucromutans str. DSM 3224 prokMSA_id:41867 AF202264.1 Syntrophococcus sucromutans str. S195 2.21.4.1.4.1.3066 OTU 13 seqs prokMSA_id:13958 Y11568.1 Desulfotomaculum guttoideum str. DSM 4024 prokMSA_id:13961 Y10029.1 Clostridium sp. str. DR6B prokMSA_id:13962 Y12289.1 Clostridium sp. str. LIP5 prokMSA_id:13963 AF067965.1 Clostridium methoxybenzovorans str. SR3; DSM 12182 prokMSA_id:17743 AJ295659.2 Clostridium celerecrescens prokMSA_id:26602 Y18184.1 Clostridium indolis str. DSM 755 prokMSA_id:39305 AJ404679.1 anaerobic dechlorinating enrichment clone ZF1 ZF1 prokMSA_id:52311 Y18185.1 Clostridium saccharolyticum str. DSM 2544 prokMSA_id:70424 AB075772.1 Clostridium sphenoides str. ATCC 19403 prokMSA_id:85342 AY221993.1 Clostridium sp. str. CITR8 prokMSA_id:85783 AF520990.1 Clostridium sp. str. TDO prokMSA_id:88374 AF443594.1 Clostridium sp. str. ArC5 prokMSA_id:104071 AY604564.1 Clostridium celerecrescens str. HAW-G4 2.21.4.1.4.1.3070 OTU 1 seq prokMSA_id:37325 AJ408124.1 equine large intestine clone DL37 2.21.4.1.4.1.3072 OTU 1 seq prokMSA_id:41204 AF371620.1 phylotype OTU-73 swine intestine clone p-2354-55G5 2.21.4.1.4.1.3075 OTU 6 seqs prokMSA_id:20827 AJ270478.2 faeces isolate str. L1-93 prokMSA_id:32710 AJ270482.2 faeces isolate str. A2-183 prokMSA_id:42286 AF132248.1 adult human fecal matter clone adhufec225 prokMSA_id:70039 AJ312385.1 Roseburia intestinalis str. L1-82 prokMSA_id:73965 AF371615.1 phylotype OTU-239 swine intestine clone p-616-a5 prokMSA_id:99633 AY305308.1 butyrate-producing M50/1 2.21.4.1.4.1.3076 OTU 28 seqs prokMSA_id:16544 AF371591.1 phylotype OTU-90 swine intestine clone p-44-a5 prokMSA_id:18972 AJ270484.2 faeces isolate str. A2-231 prokMSA_id:24546 AF262239.1 Clostridium leptum str. 10900 prokMSA_id:28261 AF445239.2 Hespellia porcina str. PPC80 prokMSA_id:35150 AB023972.1 Clostridium hylemonae str. TN-271 prokMSA_id:46947 AF371592.1 phylotype OTU-90 swine intestine clone p-2561-9F5 prokMSA_id:81063 AY169415.1 Clostridium nexile prokMSA_id:99176 AY305305.1 butyrate-producing A2-232 prokMSA_id:100067 AJ315979.1 Ruminococcus sp. str. 14531 prokMSA_id:100707 AJ576397.1 midgut homogenate Pachnoda ephippiata larva clone PeM38 prokMSA_id:101163 AY592220.1 marine ANAMMOX sediment clone AY592220 prokMSA_id:103464 AJ576367.1 hindgut homogenate Pachnoda ephippiata larva clone PeH54 prokMSA_id:103808 AY305312.1 butyrate-producing SL7/1 prokMSA_id:105684 AY685919.1 feces clone 2C12 prokMSA_id:106129 AJ576337.1 hindgut homogenate Pachnoda ephippiata larva clone PeH20 prokMSA_id:106393 AJ576351.1 hindgut homogenate Pachnoda ephippiata larva clone PeH35 prokMSA_id:107026 AJ318890.1 Clostridium sp. str. 14505 prokMSA_id:110113 AY684370.2 mucosal biopsies human intestine clone HuRC12 prokMSA_id:110259 AY684374.2 mucosal biopsies human intestine clone HuRC33 prokMSA_id:111376 AB117570.1 Clostridium hylemonae str. CT-35 prokMSA_id:111552 AB117568.1 Clostridium hylemonae str. CT-30 prokMSA_id:111570 AB117567.1 Clostridium hylemonae str. CT-14 prokMSA_id:111628 AB117566.1 Clostridium hylemonae str. CT-9 prokMSA_id:111922 AB117569.1 Clostridium hylemonae str. CT-33 prokMSA_id:112797 AY916215.1 human descending colon biopsy clone KW79 prokMSA_id:113669 AY916190.1 human ascending colon biopsy clone N874 prokMSA_id:113755 AY916284.1 human sigmoid colon biopsy clone G187 prokMSA_id:114120 AY916252.1 human descending colon biopsy clone NP09 2.21.4.1.4.1.3078 OTU 1 seq prokMSA_id:27706 AJ408179.2 equine large intestine clone ML33 2.21.4.1.4.1.3079 OTU 1 seq prokMSA_id:29237 AJ408105.1 equine large intestine clone DL18 2.21.4.1.4.1.3082 OTU 1 seq prokMSA_id:73902 AF376145.1 chicken cecum content clone 2.21.4.1.4.1.3085 OTU 1 seq prokMSA_id:69958 AJ408971.1 human colonic clone HuCA19 2.21.4.1.4.1.3086 OTU 1 seq prokMSA_id:51634 AF371546.1 phylotype OTU-310 swine intestine clone p-2746-24E5 2.21.4.1.4.1.3087 OTU 9 seqs prokMSA_id:13935 AF001696.1 rumen clone RC3 prokMSA_id:13937 AF001712.1 rumen clone RC22 prokMSA_id:13938 AF001726.1 rumen clone RCP5 prokMSA_id:13944 AB009172.1 rumen clone RFN13 bacterium prokMSA_id:13946 X89972.1 Butyrivibrio fibrisolvens prokMSA_id:13950 X89976.1 Butyrivibrio fibrisolvens prokMSA_id:41384 AJ428553.1 Butyrivibrio hungatei str. JK 615 prokMSA_id:98638 AY178635.1 Butyrivibrio hungatei str. Su6 prokMSA_id:107748 AB185815.1 rumen clone U29-H10 2.21.4.1.4.1.3088 OTU 2 seqs prokMSA_id:13957 X73449.1 Clostridium sphenoides prokMSA_id:72750 AF479585.1 Clostridium sp. str. HAAP-2 2.21.4.1.4.1.3089 OTU 7 seqs prokMSA_id:35844 AF357566.1 mpn-isolate group 18 prokMSA_id:40035 AF132243.1 adult human fecal matter clone adhufec171 prokMSA_id:40308 AJ408958.1 human colonic clone HuCA2 prokMSA_id:81152 AY169424.1 Ruminococcus obeum prokMSA_id:81272 AY169419.1 Ruminococcus obeum prokMSA_id:113064 AY916198.1 human cecum biopsy clone K379 prokMSA_id:113955 AY916229.1 human descending colon biopsy clone ME10 2.21.4.1.4.1.3091 OTU 1 seq prokMSA_id:50105 AF371616.1 phylotype OTU-51 swine intestine clone p-2195-s959-3 2.21.4.1.4.1.3092 OTU 1 seq prokMSA_id:52718 AJ408142.1 equine large intestine clone DW17 2.21.4.1.4.1.3094 OTU 1 seq prokMSA_id:25904 AF371659.1 phylotype OTU-100 swine intestine clone p-197-o5 2.21.4.1.4.1.3095 OTU 2 seqs prokMSA_id:41849 AJ408161.1 equine large intestine clone ML15 prokMSA_id:45632 AJ408237.1 equine large intestine clone PL30 2.21.4.1.4.1.3097 OTU 1 seq prokMSA_id:41212 AF132257.1 adult human fecal matter clone adhufec295 2.21.4.1.4.1.3100 OTU 1 seq prokMSA_id:37999 AJ408213.1 equine large intestine clone PL05 2.21.4.1.4.1.3102 OTU 1 seq prokMSA_id:18619 AF371567.1 phylotype OTU-80 swine intestine clone p-662-a5 2.21.4.1.4.1.3105 OTU 1 seq prokMSA_id:34466 AF287774.1 human subgingival plaque clone CK051 2.21.4.1.4.1.3107 OTU 2 seqs prokMSA_id:16477 AF202259.1 oxidoreducens str. G2-2 prokMSA_id:38558 AF202258.1 oxidoreducens str. DAS110 2.21.4.1.4.1.3109 OTU 2 seqs prokMSA_id:14096 X87151.1 Catonella morbi prokMSA_id:40708 AF385577.1 purified crevicular epithelial cells clone EZ006 oral 2.21.4.1.4.1.3111 OTU 3 seqs prokMSA_id:21995 AB034058.1 rumen clone 5C3d-13 prokMSA_id:27777 AB034059.1 rumen clone 6C3d-11 prokMSA_id:101661 AB185629.1 rumen clone F24-F08 2.21.4.1.4.1.3113 OTU 3 seqs prokMSA_id:17906 AB034060.1 rumen clone 5C3d-5 prokMSA_id:23832 AB034061.1 rumen clone 5C3d-20 prokMSA_id:30898 AB034062.1 rumen clone 5C3d-16 2.21.4.1.4.1.3114 OTU 4 seqs prokMSA_id:14000 X94966.1 Ruminococcus productus str. ATCC 27340 prokMSA_id:14001 Y10584.1 Clostridium sp. str. formate prokMSA_id:14007 L76595.1 Ruminococcus productus prokMSA_id:110918 AY858458.1 gastrointestinal tract zebra clone ZEBRA_19 2.21.4.1.4.1.3115 OTU 1 seq prokMSA_id:21698 AF371676.1 phylotype OTU-298 swine intestine clone p-273-o5 2.21.4.1.4.1.3116 OTU 1 seq prokMSA_id:50579 AB056711.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT29 2.21.4.1.4.1.3120 OTU 1 seq prokMSA_id:44560 AF371618.1 phylotype OTU-58 swine intestine clone p-196-o5 2.21.4.1.4.1.3123 OTU 1 seq prokMSA_id:45296 AF371602.1 phylotype OTU-43 swine intestine clone p-61-a5 2.21.4.1.4.1.3126 OTU 1 seq prokMSA_id:14073 X67097.1 "Eubacterium pectinii" 2.21.4.1.4.1.3128 OTU 1 seq prokMSA_id:45298 AJ408164.1 equine large intestine clone ML18 2.21.4.1.4.1.3129 OTU 1 seq prokMSA_id:24243 AF401542.1 landfill clone g14Br5 2.21.4.1.4.1.3132 OTU 1 seq prokMSA_id:41158 AB034053.1 rumen clone 3C3d-19 2.21.4.1.4.1.3136 OTU 1 seq prokMSA_id:13951 AF084837.1 sp. str. TW2 2.21.4.1.4.1.3137 OTU 2 seqs prokMSA_id:13955 AF153861.1 clone adhufec13.25 prokMSA_id:113664 AY916197.1 human cecum biopsy clone K375 2.21.4.1.4.1.3138 OTU 1 seq prokMSA_id:24175 AF371944.1 phylotype OTU-390 swine intestine clone p-5263-4Wb5 2.21.4.1.4.1.3140 OTU 1 seq prokMSA_id:14079 AF001738.1 rumen clone RF5 2.21.4.1.4.1.3141 OTU 1 seq prokMSA_id:36624 AF371555.1 phylotype OTU-75 swine intestine clone p-188-o5 2.21.4.1.4.1.3143 OTU 1 seq prokMSA_id:29937 AB034113.1 rumen clone 4C28d-24 2.21.4.1.4.1.3144 OTU 1 seq prokMSA_id:51382 AJ408042.1 equine large intestine clone CL07 2.21.4.1.4.1.3146 OTU 1 seq prokMSA_id:29867 AJ408974.1 human colonic clone HuCA22 2.21.4.1.4.1.3147 OTU 1 seq prokMSA_id:35682 AF429358.1 chicken intestinal s clone CCAJG140 2.21.4.1.4.1.3148 OTU 1 seq prokMSA_id:42492 AF371590.1 phylotype OTU-78 swine intestine clone p-228-o5 2.21.4.1.4.1.3149 OTU 13 seqs prokMSA_id:14038 L34627.1 Eubacterium rectale prokMSA_id:35147 AJ270475.2 faeces isolate str. A1-86 prokMSA_id:36445 AJ408994.1 human colonic clone HuCB14 prokMSA_id:44330 AJ270476.2 faeces isolate str. T1-815 prokMSA_id:58030 AB064884.2 sp. str. CB4 prokMSA_id:62219 AB064721.1 human feces clone NB2A11 prokMSA_id:70078 AF132286.1 adult human fecal matter clone adhufec8 prokMSA_id:81674 AY169428.1 rectale prokMSA_id:84111 AF499882.1 human colonic mucosal biopsy clone ABLC21 prokMSA_id:87206 AB099747.1 fecal elderly human clone OLDA-A9 prokMSA_id:88070 AY328375.1 feces human infant clone inhufecB-36 prokMSA_id:92704 AY343303.1 human feces clone DONOR_61 prokMSA_id:103661 AY305311.1 butyrate-producing M104/1 2.21.4.1.4.1.3150 OTU 1 seq prokMSA_id:49854 AF371629.1 phylotype OTU-340 swine intestine clone p-3848-23G3 2.21.4.1.4.1.3152 OTU 1 seq prokMSA_id:49856 AF385510.1 healthy and subjects with halitosis clone DO016 oral 2.21.4.1.4.1.3154 OTU 1 seq prokMSA_id:52933 AF287773.1 human subgingival plaque clone CK030 2.21.4.1.4.1.3156 OTU 1 seq prokMSA_id:36823 AJ408155.1 equine large intestine clone ML09 2.21.4.1.4.1.3157 OTU 1 seq prokMSA_id:35015 AJ408233.1 equine large intestine clone PL26 2.21.4.1.4.1.3158 OTU 1 seq prokMSA_id:29269 AJ408080.1 equine large intestine clone CW10 2.21.4.1.4.1.3159 OTU 1 seq prokMSA_id:30334 AJ272036.1 Parasporobacterium paucivorans str. SYR1 2.21.4.1.4.1.3160 OTU 1 seq prokMSA_id:23380 AB034009.1 rumen clone 3C0d-9 2.21.4.1.4.1.3161 OTU 1 seq prokMSA_id:25995 AB034025.1 rumen clone 4C0d-12 2.21.4.1.4.1.3162 OTU 1 seq prokMSA_id:40464 AB034122.1 rumen clone 2C28d-7 2.21.4.1.4.1.3165 OTU 2 seqs prokMSA_id:72630 AF287776.1 human subgingival plaque clone CK004 prokMSA_id:73120 AF481219.1 E2 clone MCE9_104 2.21.4.1.4.1.3166 OTU 1 seq prokMSA_id:24522 AF371668.1 phylotype OTU-332 swine intestine clone p-3487-9F3 2.21.4.1.4.1.3167 OTU 3 seqs prokMSA_id:13982 AF018560.1 rumen fluid clone 12-74 prokMSA_id:36565 AB034001.1 rumen clone 3C0d-1 prokMSA_id:52499 AB034049.1 rumen clone 5C0d-19 2.21.4.1.4.1.3168 OTU 1 seq prokMSA_id:69988 AF371577.1 phylotype OTU-66 swine intestine clone p-386-o3 2.21.4.1.4.1.3170 OTU 1 seq prokMSA_id:16766 AF371670.1 phylotype OTU-103 swine intestine clone p-1807-c3 2.21.4.1.4.1.3171 OTU 1 seq prokMSA_id:82283 AY169414.1 Lachnospira pectinoschiza 2.21.4.1.4.1.3173 OTU 1 seq prokMSA_id:14080 AF001756.1 rumen clone RF24 2.21.4.1.4.1.3174 OTU 1 seq prokMSA_id:28618 AF287772.1 human subgingival plaque clone BB124 2.21.4.1.4.1.3175 OTU 1 seq prokMSA_id:50208 AF371669.1 phylotype OTU-269 swine intestine clone p-2169-s959-3 2.21.4.1.4.1.3176 OTU 1 seq prokMSA_id:30192 AJ408058.1 equine large intestine clone CL24 2.21.4.1.4.1.3177 OTU 1 seq prokMSA_id:18923 AJ408241.1 equine large intestine clone PL34 2.21.4.1.4.1.3178 OTU 1 seq prokMSA_id:27817 AB056645.1 fiber rumen clone AAB31 2.21.4.1.4.1.3185 OTU 2 seqs prokMSA_id:26597 AF371646.1 phylotype OTU-53 swine intestine clone p-1750-b3 prokMSA_id:33320 AF371645.1 phylotype OTU-53 swine intestine clone p-1692-b3 2.21.4.1.4.1.3188 OTU 1 seq prokMSA_id:22923 AF371547.1 phylotype OTU-227 swine intestine clone p-2465-18B5 2.21.4.1.4.1.3189 OTU 3 seqs prokMSA_id:14032 L76597.1 Ruminococcus gnavus prokMSA_id:14034 X94967.1 Ruminococcus gnavus str. ATCC 29149 prokMSA_id:88198 AY328362.1 feces human infant clone inhufecA-23 2.21.4.1.4.1.3190 OTU 1 seq prokMSA_id:40639 AF371560.1 phylotype OTU-252 swine intestine clone p-2399-55G5 2.21.4.1.4.1.3191 OTU 1 seq prokMSA_id:19729 AB034018.1 rumen clone 4C0d-5 2.21.4.1.4.1.3195 OTU 1 seq prokMSA_id:13960 AB009177.1 rumen clone RFN18 bacterium 2.21.4.1.4.1.3198 OTU 1 seq prokMSA_id:28479 AB078860.1 Clostridiaceae str. 80Wc 2.21.4.1.4.1.3199 OTU 1 seq prokMSA_id:43789 AB038359.1 Coprococcus catus 2.21.4.1.4.1.3202 OTU 1 seq prokMSA_id:14086 D14148.1 Coprococcus eutactus 2.21.4.1.4.1.3203 OTU 1 seq prokMSA_id:26949 AJ408220.1 equine large intestine clone PL12 2.21.4.1.4.1.3205 OTU 1 seq prokMSA_id:30420 AJ408168.1 equine large intestine clone ML22 2.21.4.1.4.1.3208 OTU 1 seq prokMSA_id:48120 AF371614.1 phylotype OTU-59 swine intestine clone p-2184-s959-3 2.21.4.1.4.1.3209 OTU 1 seq prokMSA_id:24389 AB056634.1 fiber rumen clone AAB16 2.21.4.1.4.1.3210 OTU 1 seq prokMSA_id:44311 AB034054.1 rumen clone 3C3d-15 2.21.4.1.4.1.3211 OTU 1 seq prokMSA_id:13966 AF001710.1 rumen clone RC20 2.21.4.1.4.1.3212 OTU 1 seq prokMSA_id:71783 AF376231.1 ckncm327-B6-72 clone 2.21.4.1.4.1.3213 OTU 1 seq prokMSA_id:13967 AF001717.1 rumen clone RC28 2.21.4.1.4.1.3217 OTU 1 seq prokMSA_id:77909 AB088949.1 termite gut homogenate clone Rs-D68 bacterium 2.21.4.1.4.1.3218 OTU 1 seq prokMSA_id:77765 AB089000.1 termite gut homogenate clone Rs-N53 2.21.4.1.4.1.3221 OTU 1 seq prokMSA_id:13968 AF001727.1 rumen clone RCP10 2.21.4.1.4.1.3222 OTU 1 seq prokMSA_id:37633 AF371656.1 phylotype OTU-249 swine intestine clone p-2025-s959-5 2.21.4.1.4.1.3223 OTU 1 seq prokMSA_id:44923 AF371578.1 phylotype OTU-68 swine intestine clone p-619-a5 2.21.4.1.4.1.3224 OTU 1 seq prokMSA_id:42647 AJ408147.1 equine large intestine clone ML01 2.21.4.1.4.1.3226 OTU 1 seq prokMSA_id:45581 AF371589.1 phylotype OTU-224 swine intestine clone p-3-a5 2.21.4.1.4.1.3228 OTU 1 seq prokMSA_id:33681 AF371604.1 phylotype OTU-234 swine intestine clone p-2581-9F5 2.21.4.1.4.1.3233 OTU 1 seq prokMSA_id:37128 AB062772.1 termite gut homogenate clone BCf1-11 2.21.4.1.4.1.3234 OTU 1 seq prokMSA_id:14021 AF116854.1 Sporobacterium olearium 2.21.4.1.4.1.3235 OTU 1 seq prokMSA_id:14022 AF018557.1 rumen fluid clone JW29 2.21.4.1.4.1.3236 OTU 2 seqs prokMSA_id:55615 AF481222.1 E5 clone MCE10_236 prokMSA_id:70198 AF287770.1 Firmicutes sp. oral strain str. FTB41 2.21.4.1.4.1.3238 OTU 1 seq prokMSA_id:14023 AF052412.1 human fecal sample clone A11 2.21.4.1.4.1.3239 OTU 5 seqs prokMSA_id:13930 U41172.1 Butyrivibrio fibrisolvens prokMSA_id:13931 X89970.1 Butyrivibrio fibrisolvens prokMSA_id:37898 AF396926.1 Butyrivibrio fibrisolvens str. C211 prokMSA_id:46567 AF396927.1 Butyrivibrio fibrisolvens str. WV1 prokMSA_id:106126 AY699276.1 Butyrivibrio fibrisolvens L2 2.21.4.1.4.1.3240 OTU 1 seq prokMSA_id:16512 AF371660.1 phylotype OTU-241 swine intestine clone p-2566-9F5 2.21.4.1.4.1.3242 OTU 1 seq prokMSA_id:41448 AJ408130.1 equine large intestine clone DW05 2.21.4.1.4.1.3243 OTU 1 seq prokMSA_id:13970 AB009229.1 rumen clone RFN81 bacterium 2.21.4.1.4.1.3244 OTU 1 seq prokMSA_id:14026 AB009204.1 rumen clone RFN48 bacterium 2.21.4.1.4.1.3245 OTU 1 seq prokMSA_id:14027 AB009213.1 rumen clone RFN66 bacterium 2.21.4.1.4.1.4151 OTU 1 seq prokMSA_id:29029 AF371743.1 phylotype OTU-114 swine intestine clone p-1293-a5 2.21.4.1.4.1.4152 OTU 3 seqs prokMSA_id:33458 AF429364.1 chicken intestinal s clone CCAJG144 prokMSA_id:33914 AF371739.1 phylotype OTU-348 swine intestine clone p-4177-6Wa5 prokMSA_id:34444 AF429363.1 chicken intestinal s clone CCAJG52 2.21.4.1.4.1.4155 OTU 1 seq prokMSA_id:77833 AB089039.1 termite gut homogenate clone Rs-K92 bacterium 2.21.4.1.4.1.4158 OTU 1 seq prokMSA_id:19521 AF132235.1 adult human fecal matter clone adhufec101 2.21.4.1.4.1.4159 OTU 1 seq prokMSA_id:15993 AB009183.1 rumen clone RFN25 bacterium 2.21.4.1.4.1.4164 OTU 1 seq prokMSA_id:17850 AF376226.1 ckncm322-B3-7 clone 2.21.4.1.4.1.4165 OTU 1 seq prokMSA_id:16040 AF104837.1 Ruminococcus flavefaciens str. AR46 2.21.4.1.4.1.4167 OTU 1 seq prokMSA_id:77698 AB089038.1 termite gut homogenate clone Rs-D76 bacterium 2.21.4.1.4.1.4179 OTU 1 seq prokMSA_id:16047 M59116.1 Clostridium sporosphaeroides 2.21.4.1.4.1.4183 OTU 1 seq prokMSA_id:17822 AF371822.1 phylotype OTU-161 swine intestine clone p-1014-a5 2.21.4.1.4.1.4184 OTU 1 seq prokMSA_id:37423 AB062821.1 termite gut homogenate clone BCf4-08 2.21.4.1.4.1.4195 OTU 2 seqs prokMSA_id:22863 AF376443.1 chicken cecum mucus clone prokMSA_id:81903 AB100489.1 termite gut clone Rs-L27 2.21.4.1.4.1.4209 OTU 2 seqs prokMSA_id:25461 AF371722.1 phylotype OTU-159 swine intestine clone p-2622-9F5 prokMSA_id:49605 AF371721.1 phylotype OTU-142 swine intestine clone p-3796-23G3 2.21.4.1.4.1.4212 OTU 1 seq prokMSA_id:81416 AB100488.1 termite gut clone Rs-061 2.21.4.1.4.1.4223 OTU 1 seq prokMSA_id:73205 AF376223.1 ckncm319-B7-19 clone 2.21.4.1.4.1.4224 OTU 1 seq prokMSA_id:16045 AF001713.1 rumen clone RC23 2.21.4.1.4.1.4233 OTU 1 seq prokMSA_id:48899 AF371815.1 phylotype OTU-314 swine intestine clone p-1062-a5 2.21.4.1.4.1.4235 OTU 1 seq prokMSA_id:40616 AF371770.1 phylotype OTU-130 swine intestine clone p-84-a5 2.21.4.1.4.1.4238 OTU 1 seq prokMSA_id:43051 AF371737.1 phylotype OTU-111 swine intestine clone p-810-a5 2.21.4.1.4.1.4240 OTU 1 seq prokMSA_id:43052 AF371774.1 phylotype OTU-128 swine intestine clone p-878-a5 2.21.4.1.4.1.4246 OTU 2 seqs prokMSA_id:32491 AJ305238.1 Clostridium leptum str. DSM 753T prokMSA_id:114058 AY916319.1 human stool clone B629 2.21.4.1.4.1.4247 OTU 1 seq prokMSA_id:31763 AF371736.1 phylotype OTU-110 swine intestine clone p-193-o5 2.21.4.1.4.1.4255 OTU 1 seq prokMSA_id:29495 AF371720.1 phylotype OTU-142 swine intestine clone p-2609-9F5 2.21.4.1.4.1.4256 OTU 1 seq prokMSA_id:45715 AB034127.1 rumen clone 4C28d-18 2.21.4.1.4.1.4262 OTU 1 seq prokMSA_id:16067 AF030446.1 Ruminococcus flavefaciens str. NJ 2.21.4.1.4.1.4273 OTU 1 seq prokMSA_id:78154 AB089044.1 termite gut homogenate clone Rs-M14 bacterium 2.21.4.1.4.1.4276 OTU 2 seqs prokMSA_id:20993 AB034026.1 rumen clone 4C0d-13 prokMSA_id:48444 AB034074.1 rumen clone 3C3d-3 2.21.4.1.4.1.4277 OTU 1 seq prokMSA_id:71706 AF150697.1 Elbe River snow isolate Iso15_5 Iso15_5_1454 snow 2.21.4.1.4.1.4281 OTU 1 seq prokMSA_id:36596 AF332721.1 granular sludge clone UASB_brew_B86 2.21.4.1.4.1.4284 OTU 1 seq prokMSA_id:45766 AB034020.1 rumen clone 4C0d-7 2.21.4.1.4.1.4289 OTU 1 seq prokMSA_id:81319 AB100487.1 termite gut clone Rs-039 2.21.4.1.4.1.4290 OTU 1 seq prokMSA_id:51306 AF371734.1 phylotype OTU-291 swine intestine clone p-2576-9F5 2.21.4.1.4.1.4301 OTU 2 seqs prokMSA_id:28666 AF201985.1 direct prokMSA_id:72439 AF287779.1 human subgingival plaque clone F058 2.21.4.1.4.1.4313 OTU 2 seqs prokMSA_id:16053 L76596.1 Ruminococcus callidus prokMSA_id:16054 X85100.1 Ruminococcus callidus 2.21.4.1.4.1.4315 OTU 1 seq prokMSA_id:78171 AB089040.1 termite gut homogenate clone Rs-N94 bacterium 2.21.4.1.4.1.4316 OTU 2 seqs prokMSA_id:21306 AF371753.1 phylotype OTU-121 swine intestine clone p-241-o5 prokMSA_id:31392 AF371752.1 phylotype OTU-121 swine intestine clone p-422-o3 2.21.4.1.4.1.4320 OTU 2 seqs prokMSA_id:16082 U27711.1 Clostridium-like species prokMSA_id:16085 U27710.1 Clostridium-like species 2.21.4.1.4.1.4324 OTU 3 seqs prokMSA_id:16021 AB009219.1 rumen clone RFN71 bacterium prokMSA_id:45828 AB034076.1 rumen clone 3C3d-13 prokMSA_id:112350 AB034022.1 rumen clone 4C0d-9 2.21.4.1.4.1.4329 OTU 5 seqs prokMSA_id:29057 AB034071.1 rumen clone 6C3d-10 prokMSA_id:31936 AB034070.1 rumen clone 6C3d-12 prokMSA_id:39644 AB034072.1 rumen clone 6C3d-27 prokMSA_id:44628 AB034124.1 rumen clone 4C28d-19 prokMSA_id:54623 AB034073.1 rumen clone 6C3d-33 2.21.4.1.4.1.4330 OTU 1 seq prokMSA_id:84779 AY244949.1 cow rumen clone BE33 2.21.4.1.4.1.4331 OTU 1 seq prokMSA_id:32842 AF332720.1 granular sludge clone UASB_brew_B84 2.21.4.1.4.1.4333 OTU 1 seq prokMSA_id:36271 Y18181.1 Clostridium methylpentosum str. DSM 5476 2.21.4.1.4.1.4335 OTU 1 seq prokMSA_id:78375 AB088952.1 termite gut homogenate clone Rs-N86 bacterium 2.21.4.1.4.1.4344 OTU 1 seq prokMSA_id:15974 AB009186.1 rumen clone RFN28 bacterium 2.21.4.1.4.1.4362 OTU 1 seq prokMSA_id:45135 AJ404681.1 anaerobic dechlorinating enrichment clone ZF3 ZF3 2.21.4.1.4.1.4366 OTU 1 seq prokMSA_id:66186 AJ488078.1 chlorobenzene-degrading consortium clone IB-18 2.21.4.1.4.1.4367 OTU 1 seq prokMSA_id:27355 AF371738.1 phylotype OTU-109 swine intestine clone p-1061-a5 2.21.4.1.4.1.4371 OTU 1 seq prokMSA_id:15992 AB009175.1 rumen clone RFN16 bacterium 2.21.4.1.4.1.4379 OTU 1 seq prokMSA_id:70077 AF132280.1 adult human fecal matter clone adhufec81 2.21.4.1.4.1.4381 OTU 1 seq prokMSA_id:73826 AF376205.1 ckncm301-B3-28 clone 2.21.4.1.4.1.4387 OTU 1 seq prokMSA_id:33112 AF371740.1 phylotype OTU-287 swine intestine clone p-1719-b3 2.21.4.1.4.1.4389 OTU 1 seq prokMSA_id:16004 AF018564.1 rumen fluid clone 12-124 2.21.4.1.4.1.4390 OTU 1 seq prokMSA_id:22352 AJ400237.2 Feces clone F13 2.21.4.1.4.1.4407 OTU 1 seq prokMSA_id:33668 AF371742.1 phylotype OTU-123 swine intestine clone p-417-o3 2.21.4.1.4.1.4425 OTU 1 seq prokMSA_id:72147 AF376220.1 ckncm316-B4-5 clone 2.21.4.1.4.1.4434 OTU 1 seq prokMSA_id:77987 AB089036.1 termite gut homogenate clone Rs-K11 bacterium 2.21.4.1.4.1.4435 OTU 1 seq prokMSA_id:35786 AF371778.1 phylotype OTU-144 swine intestine clone p-2498-18B5 2.21.4.1.4.1.4440 OTU 2 seqs prokMSA_id:15971 AF001739.1 rumen clone RF6 prokMSA_id:15973 AF001765.1 rumen clone RF34 2.21.4.1.4.1.4442 OTU 1 seq prokMSA_id:15972 AF001743.1 rumen clone RF10 2.21.4.1.4.1.4443 OTU 1 seq prokMSA_id:23994 AF371775.1 phylotype OTU-335 swine intestine clone p-3567-9F3 2.21.4.1.4.1.4445 OTU 1 seq prokMSA_id:42029 AB034045.1 rumen clone 5C0d-12 2.21.4.1.4.1.4447 OTU 1 seq prokMSA_id:47100 AF371820.1 phylotype OTU-333 swine intestine clone p-1565-b5 2.21.4.1.4.1.4449 OTU 1 seq prokMSA_id:72970 AF132277.1 adult human fecal matter clone adhufec58 2.21.4.1.4.1.4450 OTU 1 seq prokMSA_id:44184 AF371761.1 phylotype OTU-338 swine intestine clone p-3778-23G3 2.21.4.1.4.1.4457 OTU 8 seqs prokMSA_id:31601 AF481148.1 Linmingia china prokMSA_id:91547 AY332392.2 Clostridiaceae rennanqilyf12 prokMSA_id:93647 AY363375.2 Clostridium sp. str. rennanqilfy3 prokMSA_id:103079 AY675965.1 Ethonalogenbacterium harbin str. Yuan-3 prokMSA_id:103855 AY434719.1 Ethanologenbacterium harbin str. X-2 prokMSA_id:107816 AY434722.1 Ethanologenbacterium harbin str. MD-19 prokMSA_id:109521 AY833426.1 Ethanologenbacterium harbinense str. CGMCC1152 prokMSA_id:110732 AY833421.1 Ethanologenbacterium harbinense str. X-29 2.21.4.1.4.1.4465 OTU 2 seqs prokMSA_id:33321 AB034039.1 rumen clone 5C0d-6 prokMSA_id:33958 AB034040.1 rumen clone 5C0d-7 2.21.4.1.4.1.4468 OTU 1 seq prokMSA_id:19757 AJ408129.1 equine large intestine clone DW04 2.21.4.1.4.1.4473 OTU 1 seq prokMSA_id:21784 AB034005.1 rumen clone 3C0d-5 2.21.4.1.4.1.4474 OTU 1 seq prokMSA_id:36670 AF429370.1 chicken intestinal s clone CCAJG148 2.21.4.1.4.1.4476 OTU 1 seq prokMSA_id:21232 AF371769.1 phylotype OTU-126 swine intestine clone p-2484-18B5 2.21.4.1.4.1.4489 OTU 1 seq prokMSA_id:30067 AF371759.1 phylotype OTU-119 swine intestine clone p-2506-18B5 2.21.4.1.4.1.4491 OTU 1 seq prokMSA_id:46657 AF376229.1 ckncm325-B3-50 clone 2.21.4.1.4.1.4493 OTU 1 seq prokMSA_id:52755 AJ408987.1 human colonic clone HuCB2 2.21.4.1.4.1.4494 OTU 1 seq prokMSA_id:52759 AF371735.1 phylotype OTU-345 swine intestine clone p-4067-6Wa3 2.21.4.1.4.1.4495 OTU 1 seq prokMSA_id:50218 AF371751.1 phylotype OTU-117 swine intestine clone p-206-o5 2.21.4.1.4.1.4499 OTU 1 seq prokMSA_id:35154 AF371744.1 phylotype OTU-304 swine intestine clone p-3051-SwA5 2.21.4.1.4.1.4500 OTU 4 seqs prokMSA_id:16076 X85099.1 Ruminococcus bromii prokMSA_id:23588 AF371771.1 phylotype OTU-216 swine intestine clone p-2452-18B5 prokMSA_id:42426 AF132247.1 adult human fecal matter clone adhufec21 prokMSA_id:61082 AF530317.1 Crohn adult fecal flora clone cadhufec014h7 2.21.4.1.4.1.4501 OTU 1 seq prokMSA_id:17517 AF385563.1 purified crevicular epithelial cells clone BU014 oral 2.21.4.1.4.1.4504 OTU 1 seq prokMSA_id:42379 AB034048.1 rumen clone 5C0d-16 2.21.4.1.4.1.4505 OTU 1 seq prokMSA_id:33345 AB034019.1 rumen clone 4C0d-6 2.21.4.1.4.1.4509 OTU 1 seq prokMSA_id:16649 AF371755.1 phylotype OTU-120 swine intestine clone p-812-a5 2.21.4.1.4.1.4510 OTU 1 seq prokMSA_id:77781 AB089034.1 termite gut homogenate clone Rs-Q53 bacterium 2.21.4.1.4.1.4511 OTU 1 seq prokMSA_id:73575 AF376218.1 ckncm314-B7-17 clone 2.21.4.1.4.1.4512 OTU 1 seq prokMSA_id:28258 AF332711.1 granular sludge clone UASB_brew_B25 2.21.4.1.4.1.4514 OTU 1 seq prokMSA_id:77791 AB088983.2 termite gut homogenate clone Rs-B34 bacterium 2.21.4.1.4.1.4515 OTU 1 seq prokMSA_id:52211 AF371808.1 phylotype OTU-385 swine intestine clone p-1772-c3 2.21.4.1.4.1.4525 OTU 1 seq prokMSA_id:78350 AB088991.1 termite gut homogenate clone Rs-Q18 bacterium 2.21.4.1.4.1.4527 OTU 1 seq prokMSA_id:17384 AB034077.1 rumen clone 5C3d-17 2.21.4.1.4.1.4528 OTU 1 seq prokMSA_id:16729 AF371773.1 phylotype OTU-127 swine intestine clone p-2428-55G5 2.21.4.1.4.1.4533 OTU 1 seq prokMSA_id:77897 AB088980.1 termite gut homogenate clone Rs-N06 bacterium 2.21.4.1.4.1.4535 OTU 8 seqs prokMSA_id:24554 AF376204.1 ckncm300-B2-4 clone prokMSA_id:26738 AF376201.1 ckncm297-B1-1 clone prokMSA_id:36483 AF376213.1 ckncm309-B3-39 clone prokMSA_id:69800 AF376214.1 ckncm310-B6-79 clone prokMSA_id:71012 AF376212.1 ckncm308-B6-4 clone prokMSA_id:73168 AF376211.1 ckncm307-B-6-40 clone prokMSA_id:73368 AF376202.1 ckncm298-B3-17 clone prokMSA_id:73521 AF376206.1 ckncm302-B3-11 clone 2.21.4.1.4.1.4537 OTU 2 seqs prokMSA_id:26264 AF371750.1 phylotype OTU-116 swine intestine clone p-1637-c5 prokMSA_id:31384 AF371749.1 phylotype OTU-116 swine intestine clone p-839-a5 2.21.4.1.4.1.4538 OTU 6 seqs prokMSA_id:26836 AF371731.1 phylotype OTU-107 swine intestine clone p-2423-55G5 prokMSA_id:28428 AF371730.1 phylotype OTU-107 swine intestine clone p-2557-9F5 prokMSA_id:31395 AJ270470.2 Faecalibacterium prausnitzii str. L2-6 prokMSA_id:35563 AJ408966.1 human colonic clone HuCA11 prokMSA_id:40793 AJ409002.1 human colonic clone HuCB29 prokMSA_id:72568 AF132236.1 adult human fecal matter clone adhufec113 2.21.4.1.4.1.4539 OTU 1 seq prokMSA_id:78294 AB089046.1 termite gut homogenate clone Rs-C61 bacterium 2.21.4.1.4.1.4540 OTU 1 seq prokMSA_id:78368 AB088968.1 termite gut homogenate clone Rs-M18 bacterium 2.21.4.1.4.1.4541 OTU 1 seq prokMSA_id:32948 AF132258.1 adult human fecal matter clone adhufec296 2.21.4.1.4.1.4544 OTU 1 seq prokMSA_id:85658 AY244917.1 cow rumen clone BF39 2.21.4.1.4.1.4557 OTU 2 seqs prokMSA_id:16037 AF001730.1 rumen clone RCP6 prokMSA_id:26324 AB034024.1 rumen clone 4C0d-11 2.21.4.1.4.1.4563 OTU 6 seqs prokMSA_id:17499 AF371729.1 phylotype OTU-107 swine intestine clone p-2203-s959-3 prokMSA_id:18520 AF371728.1 phylotype OTU-107 swine intestine clone p-1720-b3 prokMSA_id:37047 AF371726.1 phylotype OTU-107 swine intestine clone p-1706-b3 prokMSA_id:37658 AF371727.1 phylotype OTU-107 swine intestine clone p-1721-b3 prokMSA_id:39948 AF371723.1 phylotype OTU-107 swine intestine clone p-366-a3 prokMSA_id:45687 AF371724.1 phylotype OTU-107 swine intestine clone p-2840-6C5 2.21.4.1.4.1.4567 OTU 7 seqs prokMSA_id:18308 AF371717.1 phylotype OTU-184 swine intestine clone p-2617-9F5 prokMSA_id:19049 AF376216.1 ckncm312-B6-5 clone prokMSA_id:21362 AJ408989.1 human colonic clone HuCB5 prokMSA_id:46691 AF371716.1 phylotype OTU-184 swine intestine clone p-2814-24E5 prokMSA_id:49003 AF371719.1 phylotype OTU-184 swine intestine clone p-2571-9F5 prokMSA_id:51893 AB050851.1 clone CB25 prokMSA_id:52894 AF371718.1 phylotype OTU-184 swine intestine clone p-3198-SwA-3 2.21.4.1.4.1.4568 OTU 2 seqs prokMSA_id:16078 AB009169.1 rumen clone RFN10 bacterium prokMSA_id:16079 AB009210.1 rumen clone RFN63 bacterium 2.21.4.1.4.1.4569 OTU 4 seqs prokMSA_id:16011 L09175.1 str Rt51B1 prokMSA_id:16012 L09174.1 Clostridium stercorarium prokMSA_id:40758 AF266461.1 Clostridium stercorarium subsp. leptospartum str. ATCC 35414 subsp. prokMSA_id:85611 AB092895.1 acetate-degrading methanogenic consortium clone AHU10 2.21.4.1.4.1.4571 OTU 20 seqs prokMSA_id:16080 X85022.1 Fusobacterium prausnitzii prokMSA_id:18361 AJ270469.2 Faecalibacterium prausnitzii str. A2-165 prokMSA_id:22018 AJ409008.1 human colonic clone HuCA10 prokMSA_id:27857 AF132246.1 adult human fecal matter clone adhufec 218 prokMSA_id:27866 AJ413954.1 Faecalibacterium prausnitzii str. ATCC 27768 prokMSA_id:34145 AF376219.1 ckncm315-B3-32 clone prokMSA_id:51328 AF371947.1 phylotype OTU-389 swine intestine clone p-5459-2Wb5 prokMSA_id:53461 AF371733.1 phylotype OTU-107 swine intestine clone p-1749-b3 prokMSA_id:71071 AF376203.1 ckncm299-B6-29 clone prokMSA_id:72195 AF376207.1 ckncm303-B3-1 clone prokMSA_id:72853 AF376215.1 ckncm311-B3-45 clone prokMSA_id:72938 AF376210.1 ckncm306-B3-19 clone prokMSA_id:73770 AF376208.1 ckncm304-B3-9 clone prokMSA_id:74119 AJ408973.1 human colonic clone HuCA25 prokMSA_id:100419 AF371732.1 phylotype OTU-107 swine intestine clone p-1503-b5 prokMSA_id:112893 AY916308.1 human sigmoid colon biopsy clone NU74 prokMSA_id:112923 AY916300.1 human sigmoid colon biopsy clone MJ65 prokMSA_id:113076 AY916169.1 human transverse colon biopsy clone NC10 prokMSA_id:113700 AY916280.1 human sigmoid colon biopsy clone L420 prokMSA_id:114224 AY916214.1 human descending colon biopsy clone L308 2.21.4.1.4.1.4572 OTU 2 seqs prokMSA_id:77443 AF349415.1 pig feces clone prokMSA_id:77507 AF349422.1 pig feces clone 2.21.4.1.4.1.4581 OTU 2 seqs prokMSA_id:46910 AF371762.1 phylotype OTU-124 swine intestine clone p-2239-s959-3 prokMSA_id:49817 AF371763.1 phylotype OTU-124 swine intestine clone p-594-a5 2.21.4.1.4.1.4583 OTU 2 seqs prokMSA_id:16058 X98011.1 Anaerofilum agile prokMSA_id:16081 X97852.1 Anaerofilum pentosovorans 2.21.4.1.4.1.4585 OTU 12 seqs prokMSA_id:16025 L76603.1 Ruminococcus flavefaciens prokMSA_id:16035 X85097.1 Ruminococcus flavefaciens prokMSA_id:16038 AB009234.1 rumen clone RFN88 bacterium prokMSA_id:16039 AF104844.1 Ruminococcus flavefaciens prokMSA_id:16064 X83430.1 Ruminococcus flavefaciens prokMSA_id:16065 AF104846.1 Ruminococcus flavefaciens str. Y1 prokMSA_id:16066 AF104841.1 Ruminococcus flavefaciens str. AR72 prokMSA_id:16068 AF030447.1 Ruminococcus flavefaciens str. 007; LRC017 prokMSA_id:16069 AF030448.1 Ruminococcus flavefaciens str. 4; LRC083 prokMSA_id:16070 AF030450.1 Ruminococcus flavefaciens str. 17 prokMSA_id:31080 AF104836.1 Ruminococcus flavefaciens str. LP9155 prokMSA_id:105964 AB185779.1 rumen clone U29-D09 2.21.4.1.4.1.4586 OTU 2 seqs prokMSA_id:24626 AY050580.1 MCB-contaminated groundwater-treating reactor clone GOUTA8 prokMSA_id:50158 AY050596.1 MCB-contaminated groundwater-treating reactor clone GOUTB10 2.21.4.1.4.1.4592 OTU 2 seqs prokMSA_id:16041 AF104835.1 Ruminococcus flavefaciens str. LP-R1-Adx prokMSA_id:16042 AF104834.1 Ruminococcus flavefaciens str. LP-C14-Adx 2.21.4.1.4.1.4601 OTU 5 seqs prokMSA_id:16048 L76598.1 Ruminococcus albus prokMSA_id:16049 AF104839.1 Ruminococcus albus str. AR67 prokMSA_id:16052 AF030452.1 Ruminococcus albus str. OR108 prokMSA_id:16074 X85098.1 Ruminococcus albus prokMSA_id:16075 AF079847.1 Ruminococcus albus str. F-40 2.21.4.1.4.1.4602 OTU 1 seq prokMSA_id:42480 AB034033.1 rumen clone 3C0d-15 2.21.4.1.4.1.4603 OTU 8 seqs prokMSA_id:46933 AF371715.1 phylotype OTU-184 swine intestine clone p-2559-9F5 prokMSA_id:81198 AY169430.1 Faecalibacterium prausnitzii prokMSA_id:81552 AY169429.1 Faecalibacterium prausnitzii prokMSA_id:82053 AY169427.1 Faecalibacterium prausnitzii prokMSA_id:92157 AY343144.1 human feces clone REC1M_12 prokMSA_id:92569 AY343151.1 human feces clone REC1M_20 prokMSA_id:92881 AY343145.1 human feces clone REC1M_33 prokMSA_id:93090 AY343221.1 human feces clone REC6M_63 2.21.4.1.4.1.4604 OTU 1 seq prokMSA_id:19080 AF371758.1 phylotype OTU-118 swine intestine clone p-1510-b5 2.21.4.1.4.1.4611 OTU 2 seqs prokMSA_id:22844 AF371746.1 phylotype OTU-113 swine intestine clone p-641-a5 prokMSA_id:47737 AF371745.1 phylotype OTU-113 swine intestine clone p-886-a5 2.21.4.1.4.1.4612 OTU 2 seqs prokMSA_id:23492 AF332709.1 granular sludge clone UASB_brew_B8 prokMSA_id:71310 AF132242.1 adult human fecal matter clone adhufec168 2.21.4.1.4.1.4613 OTU 5 seqs prokMSA_id:40552 AB034003.1 rumen clone 3C0d-3 prokMSA_id:77617 AB088967.1 termite gut homogenate clone Rs-P37 bacterium prokMSA_id:78083 AB088958.1 termite gut homogenate clone Rs-M87 bacterium prokMSA_id:82143 AB100484.1 termite gut clone Rs-L03 prokMSA_id:100124 AY622268.1 subsurface soil clone S-F26 2.21.4.1.4.1.4618 OTU 2 seqs prokMSA_id:16043 AF030449.1 Ruminococcus flavefaciens str. ATCC 49949; C52 prokMSA_id:44827 AF371747.1 phylotype OTU-115 swine intestine clone p-421-o3 2.21.4.1.4.1.4623 OTU 1 seq prokMSA_id:72987 AJ408957.1 human colonic clone HuCA1 2.21.4.1.4.1.4633 OTU 1 seq prokMSA_id:24921 AF376228.1 ckncm324-B6-45 clone 2.21.4.1.4.1.4648 OTU 1 seq prokMSA_id:16036 AF001720.1 rumen clone RC37 2.21.4.1.4.2 sf_6 1 seq 2.21.4.1.4.2.4453 OTU 1 seq prokMSA_id:71095 AF317372.1 feedlot manure clone B4 2.21.4.1.5 Peptococc/Acidaminococc 321 seqs 2.21.4.1.5.1 sf_11 321 seqs 2.21.4.1.5.1.10 OTU 2 seqs prokMSA_id:27610 AF364911.1 clone clB02 prokMSA_id:29529 AF364927.1 clone clI20 2.21.4.1.5.1.1010 OTU 1 seq prokMSA_id:38434 AJ306706.1 Desulfosporosinus sp. str. ML7-SRB15 2.21.4.1.5.1.1012 OTU 1 seq prokMSA_id:13813 AF001774.1 rumen clone RFP7 2.21.4.1.5.1.1023 OTU 1 seq prokMSA_id:13873 AF050591.1 contaminated aquifer clone WCHB1-84 2.21.4.1.5.1.1026 OTU 2 seqs prokMSA_id:26894 AF473836.1 Veillonella montpellierensis str. ADV 281.99 prokMSA_id:85594 AY244769.1 Veillonella montpellierensis str. 2001-112662 2.21.4.1.5.1.1030 OTU 1 seq prokMSA_id:13879 AJ009489.1 anaerobic TCB-transforming consortium clone SJA-118 2.21.4.1.5.1.1036 OTU 1 seq prokMSA_id:60600 AF407698.1 Great Artesian Basin clone G07 2.21.4.1.5.1.1042 OTU 1 seq prokMSA_id:33404 AB034031.1 rumen clone 4C0d-18 2.21.4.1.5.1.1064 OTU 2 seqs prokMSA_id:13847 Y17763.1 Sporomusa sp. str. DR1/8 prokMSA_id:21147 AJ279799.1 Sporomusa malonica str. DSM 5090 Type 2.21.4.1.5.1.1067 OTU 1 seq prokMSA_id:13880 AJ009503.1 anaerobic TCB-transforming consortium clone SJA-173 2.21.4.1.5.1.107 OTU 1 seq prokMSA_id:29453 AF371709.1 phylotype OTU-284 swine intestine clone p-2785-24E5 2.21.4.1.5.1.1079 OTU 1 seq prokMSA_id:29533 Y18190.1 Propionispira arboris str. DSM 2179 2.21.4.1.5.1.126 OTU 1 seq prokMSA_id:59563 AY134907.1 Dialister sp. oral clone FY011 2.21.4.1.5.1.131 OTU 1 seq prokMSA_id:77363 AF349425.1 pig feces clone 2.21.4.1.5.1.147 OTU 2 seqs prokMSA_id:36536 AF371702.1 phylotype OTU-190 swine intestine clone p-365-a3 prokMSA_id:72926 AF371703.1 phylotype OTU-190 swine intestine clone p-73-a5 2.21.4.1.5.1.161 OTU 3 seqs prokMSA_id:13858 X72865.1 Phascolarctobacterium faecium prokMSA_id:13859 X72866.1 Phascolarctobacterium faecium prokMSA_id:13860 X72867.1 Phascolarctobacterium faecium 2.21.4.1.5.1.163 OTU 17 seqs prokMSA_id:13856 AB009182.1 rumen clone RFN24 bacterium prokMSA_id:82841 AY244975.1 cow rumen clone BS24 prokMSA_id:83021 AY244972.1 cow rumen clone BS18 prokMSA_id:84160 AY244889.1 cow rumen clone BF11 prokMSA_id:84451 AY244964.1 cow rumen clone BS10 prokMSA_id:84795 AY244956.1 cow rumen clone BS2 prokMSA_id:85301 AY244974.1 cow rumen clone BS20 prokMSA_id:85413 AY244885.1 cow rumen clone BF7 prokMSA_id:85534 AY244962.1 cow rumen clone BS8 prokMSA_id:85652 AY244892.1 cow rumen clone BF14 prokMSA_id:85821 AY244969.1 cow rumen clone BS15 prokMSA_id:86208 AY244888.1 cow rumen clone BF10 prokMSA_id:86657 AY244887.1 cow rumen clone BF9 prokMSA_id:105585 AB185632.1 rumen clone F24-F11 prokMSA_id:106125 AB185720.1 rumen clone U28-G01 prokMSA_id:106287 AB185721.1 rumen clone U28-G02 prokMSA_id:106542 AB185795.1 rumen clone U29-F07 2.21.4.1.5.1.167 OTU 2 seqs prokMSA_id:13852 X78017.1 Acidaminococcus fermentans prokMSA_id:13853 X77951.1 Acidaminococcus fermentans 2.21.4.1.5.1.177 OTU 1 seq prokMSA_id:36188 AY007667.1 Desulfosporosinus sp. str. PFB 2.21.4.1.5.1.181 OTU 1 seq prokMSA_id:58262 AF548373.1 Allisonella histaminiformans str. MR2 2.21.4.1.5.1.185 OTU 2 seqs prokMSA_id:20582 AJ276560.1 Desulfotomaculum sp. DEM-KMe98-6 prokMSA_id:35107 AJ276557.1 Desulfotomaculum sp. DEM-KMe98-10 2.21.4.1.5.1.190 OTU 14 seqs prokMSA_id:13829 M26493.1 Megasphaera elsdenii prokMSA_id:20064 AF371696.1 phylotype OTU-196 swine intestine clone p-1934-s962-3 prokMSA_id:20560 U95027.1 Megasphaera elsdenii str. ATCC 25940 prokMSA_id:24370 AY038996.1 Megasphaera elsdenii str. YJ-4 prokMSA_id:25188 AY038993.1 Megasphaera elsdenii str. JL1 prokMSA_id:36860 U95028.1 Megasphaera elsdenii str. S2 prokMSA_id:46322 AB034085.1 rumen clone 3C3d-7 prokMSA_id:50822 AB034086.1 rumen clone 5C3d-9 prokMSA_id:52166 AB034087.1 rumen clone 3C3d-18 prokMSA_id:53032 U95029.1 Megasphaera elsdenii str. S3 prokMSA_id:71785 AY038995.1 Megasphaera elsdenii str. T81 prokMSA_id:74182 AF283705.1 Megasphaera elsdenii str. La03 prokMSA_id:81738 AY196919.1 Megasphaera elsdenii str. 7-11 prokMSA_id:101308 L79909.1 Megasphaera hominis 2.21.4.1.5.1.191 OTU 1 seq prokMSA_id:22425 AF287796.1 human subgingival plaque clone CS024 2.21.4.1.5.1.212 OTU 2 seqs prokMSA_id:46485 AB049340.1 Desulfitobacterium sp. Y51 prokMSA_id:49693 AJ404686.1 Desulfitobacterium frappieri str. TCP- 2.21.4.1.5.1.228 OTU 1 seq prokMSA_id:13900 X81032.1 Desulfitobacterium sp11 2.21.4.1.5.1.2337 OTU 1 seq prokMSA_id:13675 AF050589.1 contaminated aquifer clone WCHA1-17 2.21.4.1.5.1.2345 OTU 1 seq prokMSA_id:13678 Y11566.1 Desulfotomaculum acetoxidans 2.21.4.1.5.1.2392 OTU 1 seq prokMSA_id:38532 AJ276564.1 Desulfotomaculum sp. DEM-KMe99-1 2.21.4.1.5.1.242 OTU 16 seqs prokMSA_id:13876 AF076526.1 Desulfosporosinus meridiei T2 prokMSA_id:13884 AF159120.1 Desulfosporosinus sp. str. 5apy prokMSA_id:13886 AF076245.1 Desulfosporosinus meridiei str. S6 prokMSA_id:13888 AF076247.1 Desulfosporosinus meridiei str. S8 prokMSA_id:13889 AF076248.1 Desulfosporosinus meridiei str. S5 prokMSA_id:13890 Y11571.1 Desulfosporosinus orientis prokMSA_id:25249 AF427080.1 Desulfosporosinus sp. str. P3 prokMSA_id:59920 AY133077.1 TCE-contaminated site clone ccs270 prokMSA_id:63748 AJ493052.1 Desulfosporosinus orientis str. DSMZ 7493 prokMSA_id:70866 AJ302078.1 Desulfosporosinus sp. LauIII prokMSA_id:72325 AY082482.1 neutral pH mine biofilm clone 44a-T3a prokMSA_id:81121 AY214172.1 benzene-contaminated groundwater clone ZZ9C1 prokMSA_id:81460 AY214191.1 benzene-contaminated groundwater clone ZZ14C3 prokMSA_id:95633 AJ582756.1 Desulfosporosinus idahoense str. A10 prokMSA_id:96132 AJ582757.1 Desulfosporosinus limneticum str. STP12 prokMSA_id:101538 AY233860.1 Peptococcaceae Y5 2.21.4.1.5.1.2473 OTU 1 seq prokMSA_id:13656 Y11580.1 Desulfotomaculum sp. str. DSM 7475 2.21.4.1.5.1.2482 OTU 1 seq prokMSA_id:37250 AJ276565.1 Desulfotomaculum sp. DEM-KMe99-2 2.21.4.1.5.1.2494 OTU 4 seqs prokMSA_id:30367 AJ276558.1 Desulfotomaculum sp. DEM-KMe98-4 prokMSA_id:41122 AJ276561.1 Desulfotomaculum sp. DEM-KMe98-7 prokMSA_id:51415 AJ276562.1 Desulfotomaculum sp. DEM-KMe98-8 prokMSA_id:74775 AJ276559.1 Desulfotomaculum sp. DEM-KMe98-5 2.21.4.1.5.1.250 OTU 5 seqs prokMSA_id:24283 AB034081.1 rumen clone 3C3d-5 prokMSA_id:31775 AB034078.1 rumen clone 3C3d-9 prokMSA_id:46245 AB034137.1 rumen clone 4C28d-3 prokMSA_id:51519 AB034079.1 rumen clone 3C3d-10 prokMSA_id:111786 AB034080.1 rumen clone 5C3d-10 2.21.4.1.5.1.2507 OTU 1 seq prokMSA_id:34470 AJ276566.1 Desulfotomaculum sp. DEM-KMe99-3 2.21.4.1.5.1.2518 OTU 1 seq prokMSA_id:70079 AF364910.1 clone clB14 2.21.4.1.5.1.2519 OTU 1 seq prokMSA_id:71451 AF364908.1 clone clB70 2.21.4.1.5.1.257 OTU 1 seq prokMSA_id:20105 AF473835.1 Acidaminococcus sp. str. ADV 255.99 2.21.4.1.5.1.263 OTU 1 seq prokMSA_id:13882 Z73452.1 Boom-3m-02 2.21.4.1.5.1.264 OTU 1 seq prokMSA_id:13883 AF159121.1 Desulfosporosinus sp. str. Blif 2.21.4.1.5.1.275 OTU 1 seq prokMSA_id:79562 AY185322.1 clone AKS21 2.21.4.1.5.1.298 OTU 3 seqs prokMSA_id:13862 AJ006980.1 Succinispira mobilis str. 19gly1 prokMSA_id:66171 AJ488094.1 chlorobenzene-degrading consortium clone IIIA-4 prokMSA_id:66179 AJ488085.1 chlorobenzene-degrading consortium clone IIA-29 2.21.4.1.5.1.300 OTU 1 seq prokMSA_id:81849 AY214183.1 benzene-contaminated groundwater clone ZZ12C8 2.21.4.1.5.1.302 OTU 1 seq prokMSA_id:33044 AF371707.1 phylotype OTU-199 swine intestine clone p-2464-18B5 2.21.4.1.5.1.304 OTU 4 seqs prokMSA_id:13812 AB003379.1 Selenomonas ruminantium str.JCM6582 prokMSA_id:13814 AB009188.1 rumen clone RFN3 bacterium prokMSA_id:29567 AF221598.1 Selenomonas ruminantium EAT2 prokMSA_id:39424 AF221599.1 Selenomonas ruminantium EG19 2.21.4.1.5.1.31 OTU 13 seqs prokMSA_id:13896 AJ009454.1 anaerobic TCB-transforming consortium clone SJA-19 prokMSA_id:13897 AJ009464.1 anaerobic TCB-transforming consortium clone SJA-47 prokMSA_id:13898 U84497.2 Dehalobacter restrictus prokMSA_id:13899 Y10164.1 Dehalobacter restrictus prokMSA_id:22205 AF422637.1 TCE-sediment clone d025 prokMSA_id:29474 AF422677.1 TCE-sediment clone d154 prokMSA_id:65484 AJ278164.2 Dehalobacter sp. clone SHD-11 prokMSA_id:66193 AJ488071.1 chlorobenzene-degrading consortium clone IA-18 prokMSA_id:69301 AF507944.1 Dehalobacter sp. str. TCA1 prokMSA_id:72453 AJ249096.1 SHA-67 clone prokMSA_id:108705 AY754830.1 Hudson river sediment clone Z29 prokMSA_id:113119 AY766465.1 Dehalobacter sp. E1 prokMSA_id:113528 AY673991.1 Dehalobacter sp. E2 2.21.4.1.5.1.32 OTU 1 seq prokMSA_id:74312 AF414575.1 uranium mine sediment clone P3IB-3 2.21.4.1.5.1.336 OTU 1 seq prokMSA_id:31559 AB034084.1 rumen clone 6C3d-34 2.21.4.1.5.1.34 OTU 4 seqs prokMSA_id:22408 AB034129.1 rumen clone 3C28d-2 prokMSA_id:27326 AB034132.1 rumen clone 3C28d-7 prokMSA_id:38382 AB034131.1 rumen clone 3C28d-11 prokMSA_id:41385 AB034130.1 rumen clone 3C28d-9 2.21.4.1.5.1.3453 OTU 1 seq prokMSA_id:33780 Y18214.1 Desulfonispora thiosulfatigenes str. DSM 11270 2.21.4.1.5.1.351 OTU 1 seq prokMSA_id:41482 AF479674.1 Mitsuokella jalaludinii str. M9 2.21.4.1.5.1.354 OTU 1 seq prokMSA_id:36295 AF373025.1 Zymophilus paucivorans str. DSM20756 2.21.4.1.5.1.36 OTU 3 seqs prokMSA_id:13877 AF076527.1 Desulfosporosinus meridiei S10 prokMSA_id:13885 AF076244.1 Desulfosporosinus meridiei str. S7 prokMSA_id:63750 AJ493051.1 Desulfosporosinus auripigmenti str. DSMZ 13351 2.21.4.1.5.1.362 OTU 1 seq prokMSA_id:31620 AF287792.1 human subgingival plaque isolate str. FNA3 oral 2.21.4.1.5.1.377 OTU 1 seq prokMSA_id:51787 AF385502.1 subgingival plaque clone EW079 2.21.4.1.5.1.39 OTU 1 seq prokMSA_id:63299 AF523919.1 forested wetland clone RCP2-71 2.21.4.1.5.1.392 OTU 1 seq prokMSA_id:55383 AF481210.1 E2 clone MCE7_134 2.21.4.1.5.1.397 OTU 1 seq prokMSA_id:13929 X86690.1 Dehalobacterium formicoaceticum 2.21.4.1.5.1.409 OTU 1 seq prokMSA_id:13828 L37040.1 Megasphaera cerevisiae 2.21.4.1.5.1.428 OTU 2 seqs prokMSA_id:66173 AJ488091.1 chlorobenzene-degrading consortium clone IIIA-10 prokMSA_id:66174 AJ488090.1 chlorobenzene-degrading consortium clone IIIA-1 2.21.4.1.5.1.4370 OTU 1 seq prokMSA_id:15991 AF018551.1 rumen fluid clone JW21 2.21.4.1.5.1.449 OTU 1 seq prokMSA_id:13839 AJ010964.1 Acetonema longum str. DSM 6540(T) 2.21.4.1.5.1.46 OTU 1 seq prokMSA_id:43296 AB034083.1 rumen clone 6C3d-30 2.21.4.1.5.1.460 OTU 1 seq prokMSA_id:13893 X55797.1 Peptococcus niger 2.21.4.1.5.1.463 OTU 1 seq prokMSA_id:13894 X99706.1 Syntrophobotulus glycolicus str. SlGlym 2.21.4.1.5.1.464 OTU 1 seq prokMSA_id:29056 AF385503.1 subgingival plaque clone EW084 2.21.4.1.5.1.466 OTU 1 seq prokMSA_id:45688 AF371705.1 phylotype OTU-200 swine intestine clone p-286-a3 2.21.4.1.5.1.47 OTU 1 seq prokMSA_id:16834 AJ229233.1 anoxic bulk soil flooded rice microcosm clone BSV90 clone 2.21.4.1.5.1.474 OTU 1 seq prokMSA_id:13840 AJ009459.1 anaerobic TCB-transforming consortium clone SJA-29 2.21.4.1.5.1.476 OTU 1 seq prokMSA_id:13841 AJ009477.1 anaerobic TCB-transforming consortium clone SJA-84 2.21.4.1.5.1.477 OTU 1 seq prokMSA_id:13843 AJ009494.1 anaerobic TCB-transforming consortium clone SJA-143 2.21.4.1.5.1.489 OTU 3 seqs prokMSA_id:13805 AJ010959.1 Anaerovibrio lipolyticus str. DSM 3074(T) prokMSA_id:13815 AB009216.1 rumen clone RFN69 bacterium prokMSA_id:38984 AB034191.1 Anaerovibrio lipolyticus str. ATCC 33276 2.21.4.1.5.1.49 OTU 3 seqs prokMSA_id:33994 AY050591.1 MCB-contaminated groundwater-treating reactor clone GOUTB3 prokMSA_id:50913 AY050581.1 MCB-contaminated groundwater-treating reactor clone GOUTA9 prokMSA_id:51930 AF351223.1 coal tar-contaminated groundwater clone 36-28 2.21.4.1.5.1.497 OTU 1 seq prokMSA_id:74175 AF287795.1 human subgingival plaque clone CS002 2.21.4.1.5.1.511 OTU 1 seq prokMSA_id:25868 AJ279801.1 Sporomusa sphaeroides str. DSM 2875 Type 2.21.4.1.5.1.528 OTU 1 seq prokMSA_id:82350 AY214180.1 benzene-contaminated groundwater clone ZZ12C4 2.21.4.1.5.1.529 OTU 3 seqs prokMSA_id:13844 Y17760.1 Sporomusa sp. str. DR6 prokMSA_id:13846 Y17762.1 Sporomusa sp. str. DR15 prokMSA_id:36727 AJ229183.1 anoxic bulk soil flooded rice microcosm clone BSV16 clone 2.21.4.1.5.1.534 OTU 2 seqs prokMSA_id:66181 AJ488084.1 chlorobenzene-degrading consortium clone IIA-26 prokMSA_id:72034 AJ488098.1 chlorobenzene-degrading consortium clone IIIB-2 2.21.4.1.5.1.54 OTU 1 seq prokMSA_id:70619 AF287797.1 human subgingival plaque clone AA024 2.21.4.1.5.1.545 OTU 1 seq prokMSA_id:40982 AF373022.1 Selenomonas ruminantium str. DSM2872 2.21.4.1.5.1.556 OTU 1 seq prokMSA_id:85751 AY244971.1 cow rumen clone BS17 2.21.4.1.5.1.562 OTU 2 seqs prokMSA_id:42091 AF287780.1 human subgingival plaque clone I070 prokMSA_id:68340 AF481224.1 E1 clone MCE10_265 2.21.4.1.5.1.564 OTU 2 seqs prokMSA_id:41128 AF287785.1 human subgingival plaque clone BS073 prokMSA_id:42721 AF287784.1 human subgingival plaque clone CS025 2.21.4.1.5.1.579 OTU 5 seqs prokMSA_id:13838 AJ010961.1 Anaeroarcus burkinensis str. DSM 6283(T) prokMSA_id:13851 AF071415.1 Anaeromusa acidaminophila str. DSM 3853 prokMSA_id:33760 AF349762.2 reductive TCE-dehalogenating enrichment clone TCE33 prokMSA_id:66172 AJ488092.1 chlorobenzene-degrading consortium clone IIIA-2 prokMSA_id:66184 AJ488080.1 chlorobenzene-degrading consortium clone IB-27 2.21.4.1.5.1.59 OTU 9 seqs prokMSA_id:32378 AB034146.1 rumen clone 2C28d-8 prokMSA_id:32722 AB034144.1 rumen clone 4C28d-7 prokMSA_id:37391 AF371695.1 phylotype OTU-195 swine intestine clone p-1740-b3 prokMSA_id:39342 AB034145.1 rumen clone 4C28d-10 prokMSA_id:48207 AF371694.1 phylotype OTU-194 swine intestine clone p-1941-s962-3 prokMSA_id:52521 AF371693.1 phylotype OTU-194 swine intestine clone p-922-s962-5 prokMSA_id:94802 AY373330.2 raw liquid sewage clone Dpcom136 prokMSA_id:95828 AY371262.2 raw liquid sewage clone Dpcom264 prokMSA_id:107617 AJ812140.1 mucosal biopsies human intestine clone 178k07 2.21.4.1.5.1.603 OTU 1 seq prokMSA_id:37768 AJ420107.1 Megamonas hypermegale str. DSM 1672T 2.21.4.1.5.1.614 OTU 1 seq prokMSA_id:72075 AF275913.1 anaerobic digestor clone AA01 2.21.4.1.5.1.623 OTU 2 seqs prokMSA_id:13845 Y17761.1 Sporomusa sp. str. DR5 prokMSA_id:23304 AJ279800.1 Sporomusa ovata str. DSM 2662 Type 2.21.4.1.5.1.657 OTU 4 seqs prokMSA_id:23591 AF287790.1 human subgingival plaque clone DM071 prokMSA_id:42552 AF385578.1 purified crevicular epithelial cells clone EZ011 oral prokMSA_id:43268 AF287789.1 human subgingival plaque isolate str. GAA14 oral prokMSA_id:87223 AY278628.1 Selenomonas genomosp. C2 2.21.4.1.5.1.669 OTU 1 seq prokMSA_id:28888 AF297871.1 Desulfitobacterium metallireducens 2.21.4.1.5.1.685 OTU 1 seq prokMSA_id:24490 AF373024.1 Selenomonas lacticifex str. DSM20757 2.21.4.1.5.1.708 OTU 3 seqs prokMSA_id:22697 AB034143.1 rumen clone 4C28d-16 prokMSA_id:28188 AB034141.1 rumen clone 3C28d-10 prokMSA_id:111788 AB034142.1 rumen clone 3C28d-8 2.21.4.1.5.1.709 OTU 5 seqs prokMSA_id:13800 M62703.1 Selenomonas ruminantium str.HD4 prokMSA_id:13816 AB017195.1 Selenomonas ruminantium str.S20 prokMSA_id:45161 AF221600.1 Selenomonas ruminantium ES3 prokMSA_id:85930 AY244891.1 cow rumen clone BF13 prokMSA_id:86616 AY244910.1 cow rumen clone BF32 2.21.4.1.5.1.71 OTU 1 seq prokMSA_id:81047 AY218598.1 penguin droppings sediments clone KD2-97 2.21.4.1.5.1.710 OTU 12 seqs prokMSA_id:13806 AJ010963.1 Centipeda periodontii str. DSM 2778(T) prokMSA_id:16970 AF287800.1 human subgingival plaque clone AJ036 prokMSA_id:28692 AF287801.1 Selenomonas dianae str. ATCC 43527 prokMSA_id:39572 AF458222.1 Centipeda periodontii str. HB-2 prokMSA_id:39975 AF366274.1 derived supragingival plaque on tooth surfaces clone DS071 sp. prokMSA_id:42483 AF287802.1 Selenomonas infelix str. ATCC 43532 prokMSA_id:59529 AF538861.1 Selenomonas sp. oral clone P4PA_36 P2 prokMSA_id:70073 AF385492.1 subgingival plaque clone DY027 prokMSA_id:72580 AF385576.1 purified crevicular epithelial cells clone EY047 oral prokMSA_id:92034 AY349404.1 human oral cavity clone GI064 prokMSA_id:92124 AY349407.1 human oral cavity clone IK004 prokMSA_id:92541 AY349405.1 human oral cavity clone GT010 2.21.4.1.5.1.714 OTU 1 seq prokMSA_id:17375 AB034138.1 rumen clone 4C28d-14 2.21.4.1.5.1.761 OTU 3 seqs prokMSA_id:35000 AF287783.1 human subgingival plaque clone BB166 prokMSA_id:43739 AF338413.1 Anaeroglobus geminatus str. AIP313.00; CIP 106856; CCUG 44773 prokMSA_id:68342 AF481223.1 P1 clone MCE3_141 2.21.4.1.5.1.771 OTU 1 seq prokMSA_id:13827 X82500.1 Dialister pneumosintes 2.21.4.1.5.1.778 OTU 3 seqs prokMSA_id:40064 AF376431.1 chicken cecum mucus clone prokMSA_id:69824 AF132234.1 adult human fecal matter clone adhufec395 prokMSA_id:73552 AF530309.1 Crohn adult fecal flora clone cadhufec079h7 2.21.4.1.5.1.78 OTU 1 seq prokMSA_id:32169 AB034082.1 rumen clone 4C3d-9 2.21.4.1.5.1.794 OTU 1 seq prokMSA_id:33071 AF366273.1 derived supragingival plaque on tooth surfaces clone DS051 sp. 2.21.4.1.5.1.795 OTU 1 seq prokMSA_id:50658 AF357919.1 Desulfitobacterium sp. str. Viet-1 2.21.4.1.5.1.798 OTU 1 seq prokMSA_id:13837 AJ010960.1 Anaerosinus glycerini str. DSM 5192(T) 2.21.4.1.5.1.80 OTU 5 seqs prokMSA_id:36002 AF201987.1 direct prokMSA_id:40840 AF287799.1 Selenomonas noxia str. ATCC 43541 prokMSA_id:71192 AF287798.1 human subgingival plaque clone CI002 prokMSA_id:72188 AF385495.1 subgingival plaque clone EQ054 prokMSA_id:111934 AY878645.1 Selenomonas noxia str. AIP 518-78 2.21.4.1.5.1.800 OTU 1 seq prokMSA_id:70151 AJ289179.1 corneal ulcer clone E1-K16 2.21.4.1.5.1.810 OTU 3 seqs prokMSA_id:26270 AJ408232.1 equine large intestine clone PL25 prokMSA_id:29062 AJ408079.1 equine large intestine clone CW09 prokMSA_id:35430 AJ408061.1 equine large intestine clone CL27 2.21.4.1.5.1.816 OTU 5 seqs prokMSA_id:13863 U40078.1 Desulfitobacterium frappieri prokMSA_id:13867 X95972.1 Desulfitobacterium sp prokMSA_id:13902 X95742.1 Desulfitobacterium sp. str. TCE1 prokMSA_id:45375 AJ276701.1 Desulfitobacterium frappieri str. DP7 prokMSA_id:72154 AF320982.1 Desulfitobacterium frappieri str. G2 2.21.4.1.5.1.821 OTU 1 seq prokMSA_id:34987 AF371701.1 phylotype OTU-274 swine intestine clone p-2365-55G5 2.21.4.1.5.1.825 OTU 1 seq prokMSA_id:13850 AJ229242.1 Selenomonadaceae str. SB90 2.21.4.1.5.1.832 OTU 2 seqs prokMSA_id:13865 U68528.1 Desulfitobacterium chlororespirans str. Co23 prokMSA_id:13901 X94975.1 Desulfitobacterium hafniense str. DCB-2 2.21.4.1.5.1.835 OTU 1 seq prokMSA_id:51109 AB034140.1 rumen clone 2C28d-11 2.21.4.1.5.1.845 OTU 1 seq prokMSA_id:17148 Z73455.1 Boom-3m-05 2.21.4.1.5.1.85 OTU 1 seq prokMSA_id:13799 AF161581.1 Selenomonas ruminantium str. K2 2.21.4.1.5.1.853 OTU 1 seq prokMSA_id:26036 AF414568.1 uranium mine sediment clone P3IB-51 2.21.4.1.5.1.855 OTU 1 seq prokMSA_id:28118 AF287804.1 human subgingival plaque clone AH032 2.21.4.1.5.1.856 OTU 1 seq prokMSA_id:31050 AJ279798.1 Sporomusa acidovorans str. DSM 3132 Type 2.21.4.1.5.1.858 OTU 1 seq prokMSA_id:28369 AJ409007.1 human colonic clone HuCB85 2.21.4.1.5.1.862 OTU 3 seqs prokMSA_id:28862 AF473833.1 Megasphaera micronuciformis str. AIP 49.01 prokMSA_id:38606 AF473834.1 Megasphaera micronuciformis str. AIP 412.00; CIP 107280 prokMSA_id:74093 AF385566.1 purified crevicular epithelial cells clone BU057 micronuciformis 2.21.4.1.5.1.863 OTU 13 seqs prokMSA_id:13825 Z36297.1 Eubacterium species prokMSA_id:13826 U13040.1 Eubacterium species prokMSA_id:20613 AF201990.1 direct prokMSA_id:44531 AF201989.1 direct prokMSA_id:61048 AF530347.1 Crohn adult fecal flora clone cadhufec18a06sav prokMSA_id:68355 AF481209.1 Dialister sp. str. E2_20 prokMSA_id:70158 AF287788.1 Dialister sp. str. GBA27 prokMSA_id:72316 AF287787.1 human subgingival plaque clone BS095 prokMSA_id:85145 AY162469.1 Dialister invisus str. E7_25 prokMSA_id:109904 AY850119.1 Dialister sp. str. ADV 1053.03 prokMSA_id:110067 AY850121.1 Dialister sp. str. ADV 2463.03 prokMSA_id:110825 AY850120.1 Dialister sp. str. ADV 4162.03 prokMSA_id:111341 AY850122.1 Dialister sp. str. ADV 3202.03 2.21.4.1.5.1.865 OTU 6 seqs prokMSA_id:17310 AF373023.1 Selenomonas sputigena str. ATCC35185 prokMSA_id:22780 AF385497.1 subgingival plaque clone EW051a prokMSA_id:31951 AF287793.1 Selenomonas sputigena str. ATCC 35185 prokMSA_id:52640 AF287794.1 human subgingival plaque clone DD020 prokMSA_id:72672 AF201986.1 direct prokMSA_id:73837 AJ289175.1 corneal ulcer clone E1-K17 2.21.4.1.5.1.866 OTU 5 seqs prokMSA_id:13823 AF186071.1 Veillonella ratti str. ATCC17746 prokMSA_id:13824 AF186072.1 Veillonella criceti str. ATCC17747 prokMSA_id:82021 AY211542.1 Veillonella ratti str. ADV4313.2 prokMSA_id:96523 AY355139.1 Veillonella rodentium str. DSM 20737 prokMSA_id:97329 AY355138.1 Veillonella ratti str. DSM 20736 2.21.4.1.5.1.873 OTU 1 seq prokMSA_id:25947 AF371708.1 phylotype OTU-201 swine intestine clone p-3420-SwA2 2.21.4.1.5.1.882 OTU 1 seq prokMSA_id:21823 AF371704.1 phylotype OTU-265 swine intestine clone p-2858-6C5 2.21.4.1.5.1.898 OTU 1 seq prokMSA_id:13870 Y11570.1 Desulfosporosinus orientis 2.21.4.1.5.1.903 OTU 1 seq prokMSA_id:32254 AJ292686.1 PCB-polluted soil clone WD294 2.21.4.1.5.1.909 OTU 1 seq prokMSA_id:13872 AF050590.1 contaminated aquifer clone WCHB1-77 2.21.4.1.5.1.932 OTU 2 seqs prokMSA_id:31092 AJ279802.1 Propionispora vibrioides FKBS1 prokMSA_id:77768 AJ508927.1 Propionispora hippei str. KS 2.21.4.1.5.1.940 OTU 14 seqs prokMSA_id:13820 X84006.1 Veillonella dispar prokMSA_id:13821 X84005.1 Veillonella parvula prokMSA_id:13822 X84007.1 Veillonella atypica prokMSA_id:21762 AF287782.1 human subgingival plaque clone AA050 prokMSA_id:25275 AF439639.1 Veillonella dispar str. ATCC 17748 prokMSA_id:30716 AF439640.1 Veillonella parvula str. CIP 60.1 prokMSA_id:33416 AF287781.1 human subgingival plaque clone X042 prokMSA_id:35224 AF439641.1 Veillonella atypica str. ATCC 17744 prokMSA_id:40553 AF366266.1 derived supragingival plaque on tooth surfaces clone BU083 sp. prokMSA_id:54075 AF371939.1 phylotype OTU-198 swine intestine clone p-5279-2Wa3 prokMSA_id:55140 AY152842.1 pig intestine clone PIC29 prokMSA_id:86428 AF499900.1 human colonic mucosal biopsy clone ABLCf8 prokMSA_id:95347 AY355140.1 Veillonella caviae str. DSM 20738 prokMSA_id:102037 AY571667.1 Veillonella sp. str. ADV 3107.03 2.21.4.1.5.1.943 OTU 1 seq prokMSA_id:26966 AF295661.1 spore-forming isolate str. 169 2.21.4.1.5.1.944 OTU 2 seqs prokMSA_id:45515 AB034051.1 rumen clone 5C0d-24 prokMSA_id:48795 AB034135.1 rumen clone 4C28d-2 2.21.4.1.5.1.949 OTU 1 seq prokMSA_id:41729 AF371699.1 phylotype OTU-373 swine intestine clone p-4726-2Wb2 2.21.4.1.5.1.956 OTU 1 seq prokMSA_id:13861 U81750.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinHB04 2.21.4.1.5.1.959 OTU 1 seq prokMSA_id:13803 Y09434.1 Schwartzia succinivorans str. DSM 10502T 2.21.4.1.5.1.96 OTU 1 seq prokMSA_id:71962 AF407196.1 clone GIF4 2.21.4.1.5.1.960 OTU 1 seq prokMSA_id:13804 AF001737.1 rumen clone RF4 2.21.4.1.5.1.973 OTU 1 seq prokMSA_id:13807 AF018567.1 rumen fluid clone 30-20 2.21.4.1.5.1.975 OTU 1 seq prokMSA_id:72198 AF357557.1 mpn-isolate group 9 2.21.4.1.5.1.976 OTU 1 seq prokMSA_id:20587 AY007666.1 Desulfosporosinus sp. str. P1 2.21.4.1.5.1.981 OTU 2 seqs prokMSA_id:32193 AF220326.1 temperature petroleum reservoir clone O16B1 prokMSA_id:70334 AF220334.1 temperature petroleum reservoir clone O18G7 2.21.4.1.5.1.986 OTU 1 seq prokMSA_id:70887 AF385501.1 subgingival plaque clone EW076 2.21.4.1.5.1.992 OTU 1 seq prokMSA_id:34224 AJ229198.1 anoxic bulk soil flooded rice microcosm clone BSV43 clone 2.21.4.1.5.1.999 OTU 2 seqs prokMSA_id:21285 AF287791.1 human subgingival plaque clone CS015 prokMSA_id:83279 AY207052.1 human mouth clone P2PA_80 2.21.4.1.6 Peptostreptococcaceae 151 seqs 2.21.4.1.6.1 sf_5 151 seqs 2.21.4.1.6.1.1037 OTU 1 seq prokMSA_id:81585 AY169425.1 Finegoldia magna 2.21.4.1.6.1.134 OTU 1 seq prokMSA_id:84857 AF542228.1 Peptoniphilus asaccharolyticus str. CCUG 9988 2.21.4.1.6.1.140 OTU 1 seq prokMSA_id:59568 AY134899.1 Peptostreptococcus sp. oral clone EX153 2.21.4.1.6.1.168 OTU 1 seq prokMSA_id:14259 AF142889.1 clone EKHO-5 2.21.4.1.6.1.17 OTU 1 seq prokMSA_id:59528 AF538859.1 Peptostreptococcus sp. oral clone P4PA_156 P4 oral 2.21.4.1.6.1.173 OTU 2 seqs prokMSA_id:14289 D14154.1 Anaerococcus lactolyticus prokMSA_id:84198 AF542233.1 Anaerococcus lactolyticus str. CCUG 31351 2.21.4.1.6.1.218 OTU 1 seq prokMSA_id:14269 AJ002593.1 Clostridium sp.PO 2.21.4.1.6.1.224 OTU 6 seqs prokMSA_id:81082 AY169413.1 Finegoldia magna prokMSA_id:84501 AF542227.1 Finegoldia magna str. CCUG 17636 prokMSA_id:86757 AB109770.1 Finegoldia magna str. ATCC 29328 prokMSA_id:87725 AB109771.1 Finegoldia magna str. ATCC 29328 prokMSA_id:87735 AB109769.1 Finegoldia magna str. ATCC 29328 prokMSA_id:87971 AB109772.2 Finegoldia magna str. ATCC 29328 2.21.4.1.6.1.247 OTU 1 seq prokMSA_id:36368 Z73447.1 Boom-7m-01 2.21.4.1.6.1.254 OTU 1 seq prokMSA_id:14270 X69837.1 Helcococcus kunzii 2.21.4.1.6.1.259 OTU 1 seq prokMSA_id:14275 Y07840.1 Peptoniphilus ivorii str. DSM 10022; SBH093 2.21.4.1.6.1.26 OTU 1 seq prokMSA_id:51443 AJ404680.1 Sedimentibacter saalensis 2.21.4.1.6.1.265 OTU 1 seq prokMSA_id:70715 AF317371.1 feedlot manure clone B37 2.21.4.1.6.1.2672 OTU 1 seq prokMSA_id:51211 AB062842.1 termite gut homogenate clone BCf9-05 2.21.4.1.6.1.2679 OTU 1 seq prokMSA_id:41514 AB062845.1 termite gut homogenate clone BCf9-13 2.21.4.1.6.1.268 OTU 1 seq prokMSA_id:35017 AF358114.1 Sporanaerobacter acetigenes 2.21.4.1.6.1.2694 OTU 1 seq prokMSA_id:59564 AY134903.1 sp. oral clone FX028 2.21.4.1.6.1.2701 OTU 3 seqs prokMSA_id:39613 AB034093.1 rumen clone 4C3d-12 prokMSA_id:43800 AB034092.1 rumen clone 3C3d-6 prokMSA_id:50860 AJ310135.1 pyruvativorans 2.21.4.1.6.1.2710 OTU 1 seq prokMSA_id:66939 AJ306755.1 DCP-dechlorinating consortium clone SHA-74 2.21.4.1.6.1.2714 OTU 1 seq prokMSA_id:77885 AB088954.2 termite gut homogenate clone Rs-N27 bacterium 2.21.4.1.6.1.2721 OTU 1 seq prokMSA_id:77890 AB088971.1 termite gut homogenate clone Rs-N71 bacterium 2.21.4.1.6.1.2722 OTU 1 seq prokMSA_id:78236 AB088987.2 termite gut homogenate clone Rs-E61 bacterium 2.21.4.1.6.1.2723 OTU 1 seq prokMSA_id:18066 AB034010.1 rumen clone 3C0d-10 2.21.4.1.6.1.2729 OTU 1 seq prokMSA_id:66940 AJ306754.1 DCP-dechlorinating consortium clone SHA-58 2.21.4.1.6.1.2738 OTU 4 seqs prokMSA_id:14164 AB021701.1 Mogibacterium pumilum str. ATCC 700696 prokMSA_id:14167 AB021702.1 Mogibacterium vescum str. ATCC 700697 prokMSA_id:18995 AB037874.1 Mogibacterium str. ATCC 700923 (=HM-7) prokMSA_id:46159 AB037875.1 Mogibacterium neglectum str. ATCC 700924 (=P9a-h) 2.21.4.1.6.1.2751 OTU 1 seq prokMSA_id:43339 AF287762.1 human subgingival plaque clone CK047 2.21.4.1.6.1.2752 OTU 1 seq prokMSA_id:43267 AF371688.1 phylotype OTU-167 swine intestine clone p-648-a5 2.21.4.1.6.1.2773 OTU 2 seqs prokMSA_id:28381 AF371687.1 phylotype OTU-166 swine intestine clone p-1032-a5 prokMSA_id:76547 AY167964.1 manure 2.21.4.1.6.1.2785 OTU 2 seqs prokMSA_id:14177 X73452.1 Filifactor villosus prokMSA_id:60259 AF537211.1 Filifactor villosus str. DSM1645 2.21.4.1.6.1.2792 OTU 3 seqs prokMSA_id:14150 Z36275.1 Eubacterium species prokMSA_id:14151 AJ005636.1 minutum str. ATCC 700079 prokMSA_id:14153 AB020885.1 minutum str. ATCC 700079 2.21.4.1.6.1.2795 OTU 2 seqs prokMSA_id:14202 X73451.1 Clostridium ghoni prokMSA_id:29925 AY038514.1 firmicute clone CD4C3 2.21.4.1.6.1.2796 OTU 2 seqs prokMSA_id:73998 AF287764.1 human subgingival plaque clone BB142 prokMSA_id:86132 AY207060.1 human mouth isolate str. P4P_50 2.21.4.1.6.1.2797 OTU 6 seqs prokMSA_id:75534 AY167949.1 manure prokMSA_id:75733 AY167962.1 manure prokMSA_id:76083 AY167963.1 manure prokMSA_id:76167 AY167957.1 manure prokMSA_id:76533 AY167954.1 manure prokMSA_id:76636 AY167952.1 manure 2.21.4.1.6.1.2800 OTU 2 seqs prokMSA_id:14163 Z36296.1 Mogibacterium timidum prokMSA_id:14166 U13042.1 Mogibacterium timidum 2.21.4.1.6.1.2805 OTU 1 seq prokMSA_id:59565 AY134904.1 sp. oral clone FX033 2.21.4.1.6.1.2813 OTU 1 seq prokMSA_id:52379 AJ251215.1 Anaerovorax odorimutans str. NorPut 2.21.4.1.6.1.2859 OTU 3 seqs prokMSA_id:14175 M26494.1 Clostridium sticklandii prokMSA_id:66195 AJ488068.1 chlorobenzene-degrading consortium clone IA-11 prokMSA_id:108421 AY570564.1 -temperature biodegraded Canadian oil reservoir clone PL-30B8 2.21.4.1.6.1.2869 OTU 1 seq prokMSA_id:51973 AF450134.1 Frigovirgula patagoniensis str. PPP2 2.21.4.1.6.1.2913 OTU 1 seq prokMSA_id:78301 AB088960.2 termite gut homogenate clone Rs-N82 bacterium 2.21.4.1.6.1.2916 OTU 1 seq prokMSA_id:44950 AB034041.1 rumen clone 5C0d-8 2.21.4.1.6.1.2925 OTU 1 seq prokMSA_id:36792 AF371686.1 phylotype OTU-168 swine intestine clone p-83-a5 2.21.4.1.6.1.2946 OTU 1 seq prokMSA_id:23113 AB034148.1 rumen clone 3C28d-4 2.21.4.1.6.1.2972 OTU 1 seq prokMSA_id:16550 AB034147.1 rumen clone 4C28d-20 2.21.4.1.6.1.2988 OTU 1 seq prokMSA_id:82172 AB100461.1 termite gut clone Rs-050 2.21.4.1.6.1.2993 OTU 1 seq prokMSA_id:59533 AF538856.1 oral clone P2PB_46 P3 2.21.4.1.6.1.2996 OTU 1 seq prokMSA_id:14208 Z94008.1 clone T37 2.21.4.1.6.1.3006 OTU 1 seq prokMSA_id:14135 AF050099.1 Fusibacter paucivorans 2.21.4.1.6.1.3010 OTU 1 seq prokMSA_id:14137 AB013836.1 NB1-o clone NB1-o 2.21.4.1.6.1.3018 OTU 2 seqs prokMSA_id:14165 AF001766.1 rumen clone RF35 prokMSA_id:17051 AB034004.1 rumen clone 3C0d-4 2.21.4.1.6.1.3026 OTU 14 seqs prokMSA_id:14207 X73437.1 Clostridium bifermentans prokMSA_id:14209 Y18787.1 Clostridium bifermentans str. DPH-1 soil contaminated with chlorinated aliphatic compounds prokMSA_id:29530 X75906.1 Clostridium bifermentans prokMSA_id:33501 U65715.1 strain intestinal mass mastodon carcass isolate str. -17-3 prokMSA_id:36106 AF150692.1 Elbe River snow isolate Iso11_3 Iso11_3_1001 prokMSA_id:51941 AF320283.1 Clostridium bifermentans str. TYR6; DSM 13560 prokMSA_id:70590 AB075769.1 Clostridium paraputrificum str. ATCC 638 prokMSA_id:72328 AF224673.1 Clostridium sp. str. FL2 prokMSA_id:75054 AY167941.1 manure prokMSA_id:76631 AY167932.1 manure prokMSA_id:76955 AY167944.1 manure prokMSA_id:98954 AY587781.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te19A prokMSA_id:99105 AY587782.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te20A prokMSA_id:104355 AY587793.1 Portuguese dry smoked sausages (chouricos) type Alentejano isolate str. Te62A 2.21.4.1.6.1.3034 OTU 1 seq prokMSA_id:14161 AF001753.1 rumen clone RF21 2.21.4.1.6.1.3073 OTU 1 seq prokMSA_id:14182 AF071416.1 acidaminophilum str. DSM 3953 2.21.4.1.6.1.3080 OTU 1 seq prokMSA_id:78018 AB088986.1 termite gut homogenate clone Rs-F43 bacterium 2.21.4.1.6.1.3112 OTU 5 seqs prokMSA_id:77744 AB088961.2 termite gut homogenate clone Rs-B74 bacterium prokMSA_id:77824 AB088948.1 termite gut homogenate clone Rs-M09 bacterium prokMSA_id:110205 CR933145.1 municipal wastewater treatment plant clone 012C11_B_SD_P15 prokMSA_id:110369 CR933295.1 municipal wastewater treatment plant clone 061A09_B_SD_P93 prokMSA_id:110516 CR933191.1 municipal wastewater treatment plant clone 008D06_B_SD_P15 2.21.4.1.6.1.3124 OTU 1 seq prokMSA_id:33133 AF371683.1 phylotype OTU-318 swine intestine clone p-3212-42A2 2.21.4.1.6.1.3130 OTU 1 seq prokMSA_id:14148 AJ241007.1 Norway:(Svalbard)Hornsund clone Sva1064 2.21.4.1.6.1.3131 OTU 1 seq prokMSA_id:14149 U65987.1 saphenum str. ATCC 49989 2.21.4.1.6.1.3153 OTU 3 seqs prokMSA_id:14160 AJ006963.1 sulci str. ATCC 35585 prokMSA_id:34881 AF287761.1 sp. oral strain str. A35MT prokMSA_id:71791 U13039.1 Eubacterium species 2.21.4.1.6.1.3164 OTU 1 seq prokMSA_id:14152 AF044945.1 sp. str. C2 2.21.4.1.6.1.3179 OTU 1 seq prokMSA_id:14228 AF044947.1 Peptostreptococcus sp. str. D1 2.21.4.1.6.1.3182 OTU 1 seq prokMSA_id:77831 AB088970.1 termite gut homogenate clone Rs-Q64 bacterium 2.21.4.1.6.1.3183 OTU 1 seq prokMSA_id:22418 AF191245.1 Clostridium sp. str. 48 2.21.4.1.6.1.3187 OTU 1 seq prokMSA_id:20310 AF371685.1 phylotype OTU-350 swine intestine clone p-4199-6Wa5 2.21.4.1.6.1.3192 OTU 1 seq prokMSA_id:42984 AF395430.1 acetate-enriched initiated inoculation digester sludge which had been used to treat cassava starch wastewater supplemented with 0.05% acetic acid clone Eub No. 20 2.21.4.1.6.1.3193 OTU 2 seqs prokMSA_id:14155 U13041.1 Eubacterium nodatum prokMSA_id:14156 Z36274.1 Eubacterium nodatum 2.21.4.1.6.1.3197 OTU 2 seqs prokMSA_id:14157 Z36272.1 Eubacterium brachy prokMSA_id:14158 U13038.1 Eubacterium brachy 2.21.4.1.6.1.3200 OTU 1 seq prokMSA_id:14159 Z36273.1 Eubacterium species 2.21.4.1.6.1.3214 OTU 1 seq prokMSA_id:37961 AB034015.1 rumen clone 3C0d-17 2.21.4.1.6.1.3216 OTU 1 seq prokMSA_id:36226 AF371681.1 phylotype OTU-319 swine intestine clone p-3263-42A2 2.21.4.1.6.1.3220 OTU 1 seq prokMSA_id:66192 AJ488072.1 chlorobenzene-degrading consortium clone IA-19 2.21.4.1.6.1.3230 OTU 1 seq prokMSA_id:44410 AB034014.1 rumen clone 3C0d-16 2.21.4.1.6.1.3237 OTU 1 seq prokMSA_id:41943 AF424414.1 G+C Gram-positive clone MERTZ_0CM_115 2.21.4.1.6.1.340 OTU 2 seqs prokMSA_id:70045 AF317377.1 feedlot manure clone B56 prokMSA_id:71841 AF317387.1 feedlot manure clone B90 2.21.4.1.6.1.393 OTU 1 seq prokMSA_id:85470 AF542229.1 Anaerococcus vaginalis str. CCUG 31349 2.21.4.1.6.1.436 OTU 1 seq prokMSA_id:84656 AF550609.1 Peptostreptococcaceae bacterium 19gly3 2.21.4.1.6.1.58 OTU 1 seq prokMSA_id:68341 AF481225.1 Peptostreptococcus sp. str. E3_32 2.21.4.1.6.1.604 OTU 1 seq prokMSA_id:38592 AF317361.1 feedlot manure clone B1 2.21.4.1.6.1.616 OTU 1 seq prokMSA_id:83175 AF542230.1 Peptoniphilus lacrimalis str. CCUG 31350 2.21.4.1.6.1.619 OTU 1 seq prokMSA_id:82015 AY217429.1 TCE-dechlorinating microbial community clone 1G 2.21.4.1.6.1.656 OTU 1 seq prokMSA_id:34536 AF276460.1 PCB-contaminated St. Lawrence River sediment clone RFLP 62E 2.21.4.1.6.1.668 OTU 1 seq prokMSA_id:85712 AY221992.1 Sedimentibacter sp. str. BRS2 2.21.4.1.6.1.699 OTU 1 seq prokMSA_id:52800 AJ318205.2 Clostridium sp. 4 2.21.4.1.6.1.736 OTU 4 seqs prokMSA_id:14261 X80833.1 Tissierella praeacuta prokMSA_id:14262 X80832.1 Tissierella praeacuta prokMSA_id:14263 X80841.1 Clostridium hastiforme prokMSA_id:14264 X77848.1 Clostridium hastiforme 2.21.4.1.6.1.782 OTU 1 seq prokMSA_id:14260 Z73443.1 Boom-3m-09 2.21.4.1.6.1.799 OTU 1 seq prokMSA_id:14266 X75909.1 Clostridium species 2.21.4.1.6.1.801 OTU 1 seq prokMSA_id:73616 AF317368.1 feedlot manure clone B29 2.21.4.1.6.1.823 OTU 1 seq prokMSA_id:14271 Y16279.1 Helcococcus ovis 2.21.4.1.6.1.837 OTU 1 seq prokMSA_id:14277 D14147.1 Peptoniphilus indolicus 2.21.4.1.6.1.840 OTU 1 seq prokMSA_id:14278 Y07839.1 Peptoniphilus harei str. DSM 10020; SBH432 2.21.4.1.6.1.847 OTU 1 seq prokMSA_id:14280 D14141.1 Peptoniphilus lacrimalis 2.21.4.1.6.1.861 OTU 2 seqs prokMSA_id:83803 AY244779.1 Peptoniphilus sp. str. 2002-2300004 prokMSA_id:86390 AY244778.1 Peptoniphilus sp. str. 2002-38328 2.21.4.1.6.1.870 OTU 1 seq prokMSA_id:14281 X90471.1 Peptostreptococcus sp.9succ1 2.21.4.1.6.1.88 OTU 1 seq prokMSA_id:49196 AF433166.1 Sedimentibacter hongkongensis str. HKU2 2.21.4.1.6.1.901 OTU 1 seq prokMSA_id:14290 Y07841.1 Anaerococcus octavius str. NCTC 9810 2.21.4.1.6.1.907 OTU 2 seqs prokMSA_id:14282 AF044946.1 Peptostreptococcus sp. str. S1 prokMSA_id:86504 AY153431.1 Peptoniphilus indolicus str. CCUG 46591 2.21.4.1.6.1.919 OTU 3 seqs prokMSA_id:30062 AF408269.1 Peptostreptococcus sp. clone KL-59-7-12 prokMSA_id:84746 AF542232.1 Anaerococcus prevotii str. CCUG 41932 prokMSA_id:85988 AF542234.1 Anaerococcus tetradius str. CCUG 46590 2.21.4.1.7 Syntrophomonadaceae 34 seqs 2.21.4.1.7.1 sf_5 33 seqs 2.21.4.1.7.1.1074 OTU 1 seq prokMSA_id:23528 AJ242834.1 stable thermophilic enrichment that degrades oleic acid clone JA2 JA2 2.21.4.1.7.1.2319 OTU 1 seq prokMSA_id:45167 AF203703.1 Anaerobranca gottschalkii 2.21.4.1.7.1.2350 OTU 1 seq prokMSA_id:24677 AY064218.1 Anaerobranca californiensis str. Paoha-1 2.21.4.1.7.1.2361 OTU 1 seq prokMSA_id:13687 AB021306.1 Syntrophomonas sp. str. MGB-C1 2.21.4.1.7.1.2362 OTU 1 seq prokMSA_id:13688 AF022248.1 Syntrophomonas wolfei str. LYB 2.21.4.1.7.1.2381 OTU 1 seq prokMSA_id:34976 AF058003.1 PCB-dechlorinating enrichment 2.21.4.1.7.1.2406 OTU 3 seqs prokMSA_id:24671 AF349760.2 reductive TCE-dehalogenating enrichment clone TCE4 prokMSA_id:77374 AF482448.1 granular sludge clone R6b2 prokMSA_id:86052 AY280638.1 granular sludge methanogenic UASB reactor clone G1-6 2.21.4.1.7.1.2436 OTU 1 seq prokMSA_id:13721 AB011495.1 Thermaerobacter marianensis 2.21.4.1.7.1.2456 OTU 1 seq prokMSA_id:77473 AF482440.1 granular sludge clone R4b14 2.21.4.1.7.1.2467 OTU 1 seq prokMSA_id:13691 AB021305.1 Syntrophothermus lipocalidus 2.21.4.1.7.1.2481 OTU 1 seq prokMSA_id:34346 AJ251214.1 Pelospora glutarica 2.21.4.1.7.1.2483 OTU 1 seq prokMSA_id:62405 AF529116.1 trichloroethene-contaminated site clone FTLM142 bacterium 2.21.4.1.7.1.2493 OTU 2 seqs prokMSA_id:22146 AF343566.1 Thermaerobacter subterraneus str. C21 prokMSA_id:50462 AB061441.1 Thermaerobacter nagasakiense 2.21.4.1.7.1.2536 OTU 1 seq prokMSA_id:13685 AF050585.1 contaminated aquifer clone WCHB1-71 2.21.4.1.7.1.2543 OTU 1 seq prokMSA_id:72821 AF455062.1 sludge EGSB labscale bioreactor (IIt3) clone B8 2.21.4.1.7.1.2555 OTU 1 seq prokMSA_id:13690 AF050586.1 contaminated aquifer clone WCHB1-82 2.21.4.1.7.1.4178 OTU 1 seq prokMSA_id:16088 U80596.1 Caldicellulosiruptor owensensis 2.21.4.1.7.1.4207 OTU 1 seq prokMSA_id:16091 X93020.1 Strain SP83 2.21.4.1.7.1.4213 OTU 2 seqs prokMSA_id:16094 X82842.1 Caldicellulosiruptor lactoaceticus prokMSA_id:16095 AJ004811.1 Caldicellulosiruptor kristjanssonii 2.21.4.1.7.1.4336 OTU 4 seqs prokMSA_id:16089 L35151.1 Caldicellulosiruptor sp. Rt8B.4 prokMSA_id:16092 L09186.1 str Ok9B1 prokMSA_id:16096 L09184.1 str Rt8B7 prokMSA_id:16102 L09185.1 str Rt8 B15 2.21.4.1.7.1.4338 OTU 1 seq prokMSA_id:16103 L09180.1 "Anaerocellum thermophilum" 2.21.4.1.7.1.4543 OTU 2 seqs prokMSA_id:16098 L09178.1 Caldicellulosiruptor saccharolyticus prokMSA_id:16099 L09179.1 Rainey isolate COMPB1 2.21.4.1.7.1.4553 OTU 1 seq prokMSA_id:16093 L09183.1 "Thermoanaerobacter cellulolyticus" 2.21.4.1.7.1.4562 OTU 2 seqs prokMSA_id:16101 L09182.1 str Wai35 B1 prokMSA_id:16104 L09181.1 str RI2B1 2.21.4.1.7.2 sf_6 1 seq 2.21.4.1.7.2.617 OTU 1 seq prokMSA_id:72767 AF220310.1 temperature petroleum reservoir clone O11D9 2.21.4.1.8 Unclassified 84 seqs 2.21.4.1.8.1 sf_17 84 seqs 2.21.4.1.8.1.19 OTU 1 seq prokMSA_id:49375 AF295751.1 PCB-(2345-tetrachlorobiphenyl) dechlorinating clone 2.21.4.1.8.1.215 OTU 1 seq prokMSA_id:14267 X77847.1 Clostridium filamentosum str. DSM 6645 2.21.4.1.8.1.2324 OTU 2 seqs prokMSA_id:83718 AB092903.1 acetate-degrading methanogenic consortium clone AHU18 prokMSA_id:84932 AB092869.1 acetate-degrading methanogenic consortium clone ALU27 2.21.4.1.8.1.2432 OTU 3 seqs prokMSA_id:86129 AB092894.1 acetate-degrading methanogenic consortium clone AHU09 prokMSA_id:86580 AB092893.1 acetate-degrading methanogenic consortium clone AHU08 prokMSA_id:86590 AB092859.1 acetate-degrading methanogenic consortium clone ALU17 2.21.4.1.8.1.2659 OTU 1 seq prokMSA_id:74874 AB045741.1 fiber rumen clone AAB7 2.21.4.1.8.1.2666 OTU 1 seq prokMSA_id:19426 AJ408182.1 equine large intestine clone ML36 2.21.4.1.8.1.2675 OTU 1 seq prokMSA_id:19932 AF429375.1 chicken intestinal s clone CCAJG116 2.21.4.1.8.1.2680 OTU 1 seq prokMSA_id:28819 AJ408063.1 equine large intestine clone CL29 2.21.4.1.8.1.2683 OTU 1 seq prokMSA_id:32556 AJ270477.1 faeces isolate str. L2-21 2.21.4.1.8.1.2730 OTU 1 seq prokMSA_id:35055 AJ408253.1 equine large intestine clone PW07 2.21.4.1.8.1.2746 OTU 1 seq prokMSA_id:33545 AJ408136.1 equine large intestine clone DW11 2.21.4.1.8.1.2789 OTU 2 seqs prokMSA_id:16628 AJ408119.1 equine large intestine clone DL32 prokMSA_id:51234 AJ408196.1 equine large intestine clone MW09 2.21.4.1.8.1.2822 OTU 1 seq prokMSA_id:42900 AJ408068.1 equine large intestine clone CL34 2.21.4.1.8.1.2824 OTU 1 seq prokMSA_id:29123 AF427924.1 RFLP type 18; TCE-dechlorinating consortium ANAS I clone 6B 2.21.4.1.8.1.2832 OTU 1 seq prokMSA_id:25067 AF195449.1 August collection clone kpa86rc 2.21.4.1.8.1.2843 OTU 1 seq prokMSA_id:42123 AJ408052.1 equine large intestine clone CL17 2.21.4.1.8.1.2847 OTU 1 seq prokMSA_id:42920 AJ408188.1 equine large intestine clone MW01 2.21.4.1.8.1.2855 OTU 1 seq prokMSA_id:34116 AJ408211.1 equine large intestine clone PL03 2.21.4.1.8.1.2867 OTU 1 seq prokMSA_id:39208 AB056673.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT15 2.21.4.1.8.1.2875 OTU 1 seq prokMSA_id:46613 AB056170.1 ) 2.21.4.1.8.1.2876 OTU 1 seq prokMSA_id:47342 AJ408053.1 equine large intestine clone CL18 2.21.4.1.8.1.2885 OTU 1 seq prokMSA_id:47274 AB045746.1 fiber rumen clone AAB13 2.21.4.1.8.1.2889 OTU 1 seq prokMSA_id:49915 AJ408159.1 equine large intestine clone ML13 2.21.4.1.8.1.289 OTU 1 seq prokMSA_id:24041 AF424411.1 G+C Gram-positive clone MERTZ_21CM_91 2.21.4.1.8.1.2896 OTU 1 seq prokMSA_id:45635 AB045745.1 fiber rumen clone AAB12 2.21.4.1.8.1.2912 OTU 1 seq prokMSA_id:20026 AB056169.1 ) 2.21.4.1.8.1.2977 OTU 1 seq prokMSA_id:41744 AF447137.1 clone TDC-S5:80 2.21.4.1.8.1.2992 OTU 1 seq prokMSA_id:31119 AJ408095.1 equine large intestine clone DL07 2.21.4.1.8.1.3009 OTU 1 seq prokMSA_id:14064 U81763.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinBC06 2.21.4.1.8.1.301 OTU 1 seq prokMSA_id:46259 AJ408051.1 equine large intestine clone CL16 2.21.4.1.8.1.3030 OTU 2 seqs prokMSA_id:79158 AY187890.1 mine water clone GG13 prokMSA_id:79513 AY187891.1 mine water clone GG15 2.21.4.1.8.1.3051 OTU 1 seq prokMSA_id:14171 AF142887.1 clone EKHO-3 2.21.4.1.8.1.3052 OTU 1 seq prokMSA_id:14172 AF142792.1 clone ACE-14 2.21.4.1.8.1.3053 OTU 1 seq prokMSA_id:14173 AF142789.1 clone ACE-8 2.21.4.1.8.1.3056 OTU 1 seq prokMSA_id:49346 AJ408091.1 equine large intestine clone DL03 2.21.4.1.8.1.3068 OTU 1 seq prokMSA_id:22544 AJ408208.1 equine large intestine clone MW21 2.21.4.1.8.1.3071 OTU 1 seq prokMSA_id:46273 AF441880.1 firmicute clone CD13F11 2.21.4.1.8.1.3099 OTU 1 seq prokMSA_id:26513 AJ408057.1 equine large intestine clone CL23 2.21.4.1.8.1.3122 OTU 1 seq prokMSA_id:22236 AF371647.1 phylotype OTU-63 swine intestine clone p-7-a5 2.21.4.1.8.1.3139 OTU 1 seq prokMSA_id:46317 AJ408066.1 equine large intestine clone CL32 2.21.4.1.8.1.3142 OTU 1 seq prokMSA_id:28123 AF429376.1 chicken intestinal s clone CCAJG151 2.21.4.1.8.1.3196 OTU 1 seq prokMSA_id:14084 AF018559.1 rumen fluid clone JW33 2.21.4.1.8.1.3204 OTU 1 seq prokMSA_id:14088 AF018547.1 rumen fluid clone JW11 2.21.4.1.8.1.3207 OTU 1 seq prokMSA_id:50752 AJ408113.1 equine large intestine clone DL26 2.21.4.1.8.1.3215 OTU 1 seq prokMSA_id:37025 AF461499.1 chicken intestinal s clone CIAJG49 2.21.4.1.8.1.331 OTU 1 seq prokMSA_id:14239 AF142795.1 clone ACE-18 2.21.4.1.8.1.3476 OTU 3 seqs prokMSA_id:85077 AB092856.1 acetate-degrading methanogenic consortium clone ALU14 prokMSA_id:85484 AB092872.1 acetate-degrading methanogenic consortium clone ALU30 prokMSA_id:86563 AB092873.1 acetate-degrading methanogenic consortium clone ALU31 2.21.4.1.8.1.3823 OTU 2 seqs prokMSA_id:85106 AB092861.1 acetate-degrading methanogenic consortium clone ALU19 prokMSA_id:85279 AB092860.1 acetate-degrading methanogenic consortium clone ALU18 2.21.4.1.8.1.4168 OTU 1 seq prokMSA_id:62641 AF515500.1 human gingivae clone 29D19 2.21.4.1.8.1.4182 OTU 1 seq prokMSA_id:16010 AF018550.1 rumen fluid clone JW19 2.21.4.1.8.1.4201 OTU 1 seq prokMSA_id:44398 AF276458.1 PCB-contaminated St. Lawrence River sediment clone RFLP 50E 2.21.4.1.8.1.4219 OTU 1 seq prokMSA_id:27876 AJ408132.1 equine large intestine clone DW07 2.21.4.1.8.1.4274 OTU 1 seq prokMSA_id:32657 AF276452.1 PCB-contaminated St. Lawrence River sediment clone RFLP 18E 2.21.4.1.8.1.4292 OTU 1 seq prokMSA_id:22107 AF153873.1 clone adhufec53.25 2.21.4.1.8.1.4302 OTU 1 seq prokMSA_id:49113 AY050603.1 clone GOUTA13 2.21.4.1.8.1.4307 OTU 1 seq prokMSA_id:53789 AF376430.1 chicken cecum mucus clone 2.21.4.1.8.1.4308 OTU 1 seq prokMSA_id:71644 AF317381.1 feedlot manure clone B78 2.21.4.1.8.1.4347 OTU 1 seq prokMSA_id:20780 AJ408054.1 equine large intestine clone CL19 2.21.4.1.8.1.4350 OTU 1 seq prokMSA_id:51616 AJ408094.1 equine large intestine clone DL06 2.21.4.1.8.1.4355 OTU 1 seq prokMSA_id:15981 AF018555.1 rumen fluid clone JW26 2.21.4.1.8.1.4358 OTU 1 seq prokMSA_id:15986 AF050629.1 contaminated aquifer clone WsCH8 2.21.4.1.8.1.4368 OTU 1 seq prokMSA_id:23070 AJ408180.1 equine large intestine clone ML34 2.21.4.1.8.1.4383 OTU 1 seq prokMSA_id:48828 AJ408106.1 equine large intestine clone DL19 2.21.4.1.8.1.4395 OTU 1 seq prokMSA_id:70024 AF429367.1 chicken intestinal s clone CCAJG39 2.21.4.1.8.1.4408 OTU 1 seq prokMSA_id:35394 AJ408060.1 equine large intestine clone CL26 2.21.4.1.8.1.4430 OTU 1 seq prokMSA_id:40419 AB056678.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT23 2.21.4.1.8.1.4452 OTU 1 seq prokMSA_id:20899 AJ408172.1 equine large intestine clone ML26 2.21.4.1.8.1.4484 OTU 1 seq prokMSA_id:31732 AJ408121.1 equine large intestine clone DL34 2.21.4.1.8.1.4487 OTU 1 seq prokMSA_id:40486 AJ408070.1 equine large intestine clone CL36 2.21.4.1.8.1.4564 OTU 2 seqs prokMSA_id:29607 AF429373.1 chicken intestinal s clone CCAJG31 prokMSA_id:70286 AF429372.1 chicken intestinal s clone CCAJG1 2.21.4.1.8.1.4628 OTU 1 seq prokMSA_id:30534 AF284556.1 Hydrogen production community clone HPB-G1-15 2.21.4.1.8.1.472 OTU 1 seq prokMSA_id:29789 AF295745.1 PCB-(2345-tetrachlorobiphenyl) dechlorinating clone 2.21.4.1.8.1.602 OTU 1 seq prokMSA_id:61053 AF530343.1 Crohn adult fecal flora clone cadhufec17f05sav 2.21.4.1.8.1.926 OTU 2 seqs prokMSA_id:82915 AB092854.1 acetate-degrading methanogenic consortium clone ALU12 prokMSA_id:86338 AB092902.1 acetate-degrading methanogenic consortium clone AHU17 2.21.4.2 Halanaerobiales 34 seqs 2.21.4.2.1 Halanaerobiaceae 21 seqs 2.21.4.2.1.1 sf_1 20 seqs 2.21.4.2.1.1.1001 OTU 1 seq prokMSA_id:14311 X89072.1 Halocella cellulolytica 2.21.4.2.1.1.1002 OTU 1 seq prokMSA_id:14312 AF142885.1 clone EKHO-1 2.21.4.2.1.1.1003 OTU 1 seq prokMSA_id:14313 L22890.1 Halanaerobium salsugo 2.21.4.2.1.1.1006 OTU 1 seq prokMSA_id:14314 L39787.1 Halanaerobium lacusroseus 2.21.4.2.1.1.1043 OTU 1 seq prokMSA_id:14323 Z49116.1 Haloincola saccharolyticum 2.21.4.2.1.1.1055 OTU 1 seq prokMSA_id:14328 Z49115.1 Halanaerobium saccharolyticum 2.21.4.2.1.1.197 OTU 8 seqs prokMSA_id:14315 U32594.1 Halanaerobium acetoethylicus prokMSA_id:14316 X89071.1 Halanaerobium acetoethylicum prokMSA_id:14317 U86448.1 Halanaerobium acetethylicum prokMSA_id:14319 AB022034.1 Halanaerobium praevalens str. DSM 2228 prokMSA_id:14321 AB022035.1 Halanaerobium praevalens strain S-8 can Swedish salted herrings prokMSA_id:14324 X89070.1 Halanaerobium saccharolyticum prokMSA_id:14326 X89069.1 Halanaerobium saccharolyticum prokMSA_id:49598 AJ309519.1 Halanaerobium sp. KT-2/3-3 2.21.4.2.1.1.803 OTU 4 seqs prokMSA_id:23398 AJ309520.1 Halanaerobium sp. KT-8-13 prokMSA_id:23710 AJ309524.1 brine-seawater interface clone KT-2K23 bacterium prokMSA_id:24600 AJ309525.1 brine-seawater interface clone KT-2K28 bacterium prokMSA_id:49272 AJ309521.1 Halanaerobium sp. S5L4 2.21.4.2.1.1.968 OTU 1 seq prokMSA_id:14309 L22016.1 Halothermothrix orenii 2.21.4.2.1.1.991 OTU 1 seq prokMSA_id:14310 AF142892.1 clone EKHO-9 2.21.4.2.1.2 sf_2 1 seq 2.21.4.2.1.2.733 OTU 1 seq prokMSA_id:14292 U32593.1 Halobacteroides lacunaris 2.21.4.2.2 Halobacteroidaceae 11 seqs 2.21.4.2.2.1 sf_1 11 seqs 2.21.4.2.2.1.6 OTU 1 seq prokMSA_id:14301 X89074.1 Halobacteroides halobius 2.21.4.2.2.1.754 OTU 1 seq prokMSA_id:14295 X89075.1 Halanaerobacter lacunaris 2.21.4.2.2.1.786 OTU 2 seqs prokMSA_id:69790 Y18485.1 Orenia salinaria str. SG3902 prokMSA_id:83871 AJ495677.1 Mediterranean saltern clone 2.21.4.2.2.1.887 OTU 2 seqs prokMSA_id:14293 Y14212.1 Halanaerobacter salinarius str. SG3903 prokMSA_id:14294 X89076.1 Halanaerobacter chitinovorans 2.21.4.2.2.1.947 OTU 1 seq prokMSA_id:14300 U32595.1 Halobacteroides halobius 2.21.4.2.2.1.950 OTU 1 seq prokMSA_id:14302 X89073.1 Orenia marismortui 2.21.4.2.2.1.953 OTU 1 seq prokMSA_id:14304 AF152595.1 Orenia sivashensis str. Z-7191 (T) 2.21.4.2.2.1.958 OTU 1 seq prokMSA_id:14307 M59122.1 Sporohalobacter lortetii 2.21.4.2.2.1.966 OTU 1 seq prokMSA_id:14308 X89077.1 Acetohalobium arabaticum 2.21.4.2.3 Unclassified 2 seqs 2.21.4.2.3.1 sf_1 2 seqs 2.21.4.2.3.1.758 OTU 1 seq prokMSA_id:14296 AF142899.1 clone EKHO-16 2.21.4.2.3.1.759 OTU 1 seq prokMSA_id:14299 U32596.1 Halanaerobacter chitinivorans str. W5C8; OCM 229 2.21.4.3 Thermoacetogenium 3 seqs 2.21.4.3.1 Unclassified 3 seqs 2.21.4.3.1.1 sf_1 3 seqs 2.21.4.3.1.1.2439 OTU 1 seq prokMSA_id:13717 AB020336.1 Thermacetogenium phaeum 2.21.4.3.1.1.2471 OTU 1 seq prokMSA_id:13728 U76363.1 Thermoterrabacterium ferrireducens 2.21.4.3.1.1.2544 OTU 1 seq prokMSA_id:13730 U76364.1 Thermoterrabacterium ferrireducens 2.21.4.4 Thermoanaerobacteriales 50 seqs 2.21.4.4.1 Thermoanaerobacteriaceae 50 seqs 2.21.4.4.1.1 sf_1 50 seqs 2.21.4.4.1.1.2311 OTU 1 seq prokMSA_id:34305 AF220311.1 temperature petroleum reservoir clone O11E1 2.21.4.4.1.1.2365 OTU 2 seqs prokMSA_id:13708 U82327.1 Moorella glycerini str. YS6 prokMSA_id:82633 AF487538.1 Moorella mulderi str. TMS 2.21.4.4.1.1.2366 OTU 2 seqs prokMSA_id:36077 AF280836.1 bioreactor clone tbr4-78 prokMSA_id:36399 AF280823.1 bioreactor clone tbr1-8 2.21.4.4.1.1.2368 OTU 9 seqs prokMSA_id:13703 AJ242494.1 Moorella thermoacetica str. ET-5a prokMSA_id:13704 L09168.1 Moorella thermoautotrophica prokMSA_id:75104 AB086398.1 Moorella sp. str. F21 prokMSA_id:107449 AJ633105.1 Moorella thermoacetica PT1 = DSM 12993 prokMSA_id:108102 AY766035.1 Moorella sp. str. AIP 383.98 prokMSA_id:108103 AY766037.1 Moorella sp. str. AIP 246.00 prokMSA_id:108104 AY766036.1 Moorella sp. str. AIP 384.98 prokMSA_id:108105 AY766038.1 Moorella sp. str. AIP 247.00 prokMSA_id:108106 AY766039.1 Moorella sp. str. AIP 248.00 2.21.4.4.1.1.2372 OTU 3 seqs prokMSA_id:13769 X69336.1 Thermoanaerobacter acetoethylicus str. ATCC 33265 prokMSA_id:13770 L09163.1 Thermoanaerobacter acetoethylicus prokMSA_id:13772 L09162.1 Thermoanaerobacter ethanolicus str. JW-200T 2.21.4.4.1.1.2377 OTU 1 seq prokMSA_id:39044 AF174484.1 Carboxydibrachium pacificum 2.21.4.4.1.1.2383 OTU 1 seq prokMSA_id:13781 Y11279.1 Thermoanaerobacter mathranii str. A3 2.21.4.4.1.1.2400 OTU 1 seq prokMSA_id:34323 Y18182.1 Clostridium uzonii str. DSM 9752 2.21.4.4.1.1.2408 OTU 1 seq prokMSA_id:13793 U14330.1 Thermoanaerobacter lacticus 2.21.4.4.1.1.2441 OTU 3 seqs prokMSA_id:13755 L09172.1 Thermoanaerobacterium xylanolyticum prokMSA_id:13757 L09171.1 Thermoanaerobacterium thermosulfurigenes prokMSA_id:13760 L09170.1 "Thermoanaerobium lactoethylicum" 2.21.4.4.1.1.2453 OTU 1 seq prokMSA_id:27592 AF247003.1 Thermoanaerobacterium thermosaccharolyticum str. D120-70 2.21.4.4.1.1.2459 OTU 1 seq prokMSA_id:13761 L09169.1 Thermoanaerobacterium saccharolyticum 2.21.4.4.1.1.2461 OTU 1 seq prokMSA_id:13763 X93359.1 Thermoanaerobacterium aotearoense 2.21.4.4.1.1.2463 OTU 1 seq prokMSA_id:29733 AF234164.1 Thermoanaerobacter sulfurigignens str. JW/SL826T 2.21.4.4.1.1.2468 OTU 1 seq prokMSA_id:13765 L09160.1 Thermoanaerobacter kivui 2.21.4.4.1.1.2478 OTU 3 seqs prokMSA_id:71328 AF220322.1 temperature petroleum reservoir clone O14E7 prokMSA_id:85550 AY216597.1 Thermoanaerobacter subterraneus str. SL9 prokMSA_id:87991 AY280871.1 Thermoanaerobacter sp. str. K67 2.21.4.4.1.1.2479 OTU 1 seq prokMSA_id:13780 L09167.1 Thermoanaerobacter thermocopriae 2.21.4.4.1.1.2486 OTU 2 seqs prokMSA_id:13773 L23477.1 Clostridium sp. str. AZ3 B.1 prokMSA_id:13774 L09161.1 Thermoanaerobacter thermohydrosulfuricus str. E100-69T 2.21.4.4.1.1.2492 OTU 11 seqs prokMSA_id:13766 X92513.1 Thermoanaerobacter wiegelii prokMSA_id:13789 L09164.1 Thermoanaerobacter ethanolicus prokMSA_id:13790 L09165.1 Thermoanaerobacter brockii prokMSA_id:26976 AF212925.1 Thermoanaerobacter yonseiensis str. KB1 prokMSA_id:59095 AF542519.1 Thermoanaerobacter ethanolicus str. X521 prokMSA_id:59096 AF542517.1 Thermoanaerobacter ethanolicus str. X514 prokMSA_id:59097 AF542518.1 Thermoanaerobacter ethanolicus str. X561 prokMSA_id:59098 AF542521.1 Thermoanaerobacter ethanolicus str. X524 prokMSA_id:66677 AE013169.1 Thermoanaerobacter tengcongensis prokMSA_id:66681 AE012979.1 Thermoanaerobacter tengcongensis str. MB4 prokMSA_id:85134 AY216596.1 Thermoanaerobacter subterraneus str. OCA1 2.21.4.4.1.1.2505 OTU 1 seq prokMSA_id:70136 AF220318.1 temperature petroleum reservoir clone O14C2 2.21.4.4.1.1.2552 OTU 1 seq prokMSA_id:21704 AF321086.1 Gelria glutamica str. TGO 2.21.4.4.1.1.2558 OTU 1 seq prokMSA_id:13767 U51198.1 Thermoanaerobacter sp. str. AB11 Ad 2.21.4.4.1.1.2559 OTU 1 seq prokMSA_id:13768 Y16940.1 Thermoanaerobacter sulfurophilus str. L-64 2.21.4.5 Unclassified 18 seqs 2.21.4.5.1 Unclassified 18 seqs 2.21.4.5.1.1 sf_3 12 seqs 2.21.4.5.1.1.1083 OTU 1 seq prokMSA_id:18032 AB052396.1 Symbiobacterium sp. HN9 2.21.4.5.1.1.2373 OTU 1 seq prokMSA_id:79013 AY181050.1 ODP borehole 1026B fluid clone 1026B236 2.21.4.5.1.1.2394 OTU 1 seq prokMSA_id:13702 AF142820.1 clone ACE-45 2.21.4.5.1.1.2424 OTU 1 seq prokMSA_id:13710 AF142965.1 clone TAYNAYA-2 2.21.4.5.1.1.2426 OTU 1 seq prokMSA_id:13711 AF142787.1 clone ACE-5 2.21.4.5.1.1.2430 OTU 1 seq prokMSA_id:22769 AB052383.1 Symbiobacterium sp. MN13 2.21.4.5.1.1.4186 OTU 1 seq prokMSA_id:23194 AJ408236.1 equine large intestine clone PL29 2.21.4.5.1.1.4257 OTU 1 seq prokMSA_id:20099 AJ408115.1 equine large intestine clone DL28 2.21.4.5.1.1.4280 OTU 2 seqs prokMSA_id:62683 AF507878.1 Mono Lake at depth 23m station 6 July 2000 clone ML623J-27 prokMSA_id:63829 AF454299.1 Bacillus sp. clone ML1228J-10 2.21.4.5.1.1.4294 OTU 1 seq prokMSA_id:16629 AF376405.1 chicken cecum mucus clone 2.21.4.5.1.1.4625 OTU 1 seq prokMSA_id:42707 AJ408261.1 equine large intestine clone PW15 2.21.4.5.1.2 sf_4 1 seq 2.21.4.5.1.2.2398 OTU 1 seq prokMSA_id:63105 AY093477.1 deep marine sediment clone MB-C2-106 2.21.4.5.1.3 sf_5 1 seq 2.21.4.5.1.3.4385 OTU 1 seq prokMSA_id:45345 AJ408143.1 equine large intestine clone DW18 2.21.4.5.1.4 sf_6 2 seqs 2.21.4.5.1.4.3260 OTU 1 seq prokMSA_id:29451 AJ306699.1 Sulfobacillus sp. str. ML1/10-22 2.21.4.5.1.4.3518 OTU 1 seq prokMSA_id:40294 AJ306701.1 Sulfobacillus sp. str. ML1/10-19 2.21.4.5.1.5 sf_7 1 seq 2.21.4.5.1.5.4216 OTU 1 seq prokMSA_id:19380 AF317384.1 feedlot manure clone B82 2.21.4.5.1.6 sf_8 1 seq 2.21.4.5.1.6.359 OTU 1 seq prokMSA_id:1658 AB011342.1 clone: TUG14 clone TUG14 2.21.5 Desulfotomaculum 50 seqs 2.21.5.1 Unclassified 50 seqs 2.21.5.1.1 Unclassified 50 seqs 2.21.5.1.1.1 sf_1 50 seqs 2.21.5.1.1.1.198 OTU 2 seqs prokMSA_id:60009 AB091323.1 Pelotomaculum sp. str. JT prokMSA_id:60014 AB091325.1 UASB granular sludge clone JI 2.21.5.1.1.1.2316 OTU 1 seq prokMSA_id:13666 X91170.1 Strain SporeB (Harmsen) 2.21.5.1.1.1.2317 OTU 1 seq prokMSA_id:13667 Y14845.1 Sporotomaculum hydroxybenzoicum 2.21.5.1.1.1.2318 OTU 1 seq prokMSA_id:13669 AF009646.1 Desulfotomaculum kuznetsovii 2.21.5.1.1.1.2320 OTU 1 seq prokMSA_id:71619 AF295656.1 Desulfotomaculum sp. str. 175 2.21.5.1.1.1.233 OTU 1 seq prokMSA_id:13904 Y11572.1 Desulfotomaculum ruminis 2.21.5.1.1.1.2336 OTU 1 seq prokMSA_id:13674 AF050588.1 contaminated aquifer clone WCHB1-89 2.21.5.1.1.1.2342 OTU 2 seqs prokMSA_id:13652 Y11567.1 Desulfotomaculum geothermicum str. DSM 3669 prokMSA_id:47128 AJ294428.1 Desulfotomaculum geothermicum str. DSM 3669 2.21.5.1.1.1.2351 OTU 4 seqs prokMSA_id:13671 Y11574.1 Desulfotomaculum thermobenzoicum str. DSM 6193 prokMSA_id:13677 Y11578.1 Desulfotomaculum sp. str. DSM 7476 prokMSA_id:30024 Y11577.1 Desulfotomaculum sp. str. DSM 7474 prokMSA_id:51349 AJ294430.1 Desulfotomaculum thermobenzoicum str. DSM 6193 2.21.5.1.1.1.2359 OTU 1 seq prokMSA_id:60016 AB091324.1 UASB granular sludge clone JP 2.21.5.1.1.1.2371 OTU 3 seqs prokMSA_id:13682 Y11576.1 Desulfotomaculum sp. str. DSM 7213 prokMSA_id:34816 AJ294432.1 Desulfotomaculum gibsoniae str. DSM 7213 prokMSA_id:38022 AJ294431.1 Desulfotomaculum gibsoniae str. DSM 7213 2.21.5.1.1.1.2409 OTU 1 seq prokMSA_id:42719 AF423181.1 Toluene-degrading methanogenic consortium clone Eub 1 consortium 2.21.5.1.1.1.2414 OTU 1 seq prokMSA_id:51740 AJ294433.1 Desulfotomaculum gibsoniae str. DSM 7213 2.21.5.1.1.1.2420 OTU 1 seq prokMSA_id:73391 AF295657.1 Desulfotomaculum sp. str. 176 2.21.5.1.1.1.2443 OTU 1 seq prokMSA_id:13655 Y11573.1 Desulfotomaculum thermoacetoxidans 2.21.5.1.1.1.245 OTU 1 seq prokMSA_id:13906 AJ012602.1 Desulfotomaculum 2.21.5.1.1.1.2458 OTU 1 seq prokMSA_id:23525 AY069974.1 Desulfotomaculum sp. str. Mechichi-2001 2.21.5.1.1.1.2470 OTU 1 seq prokMSA_id:13654 AF069293.1 Desulfotomaculum luciae 2.21.5.1.1.1.2476 OTU 1 seq prokMSA_id:17431 AB076610.1 Sporotomaculum syntrophicum str. FB 2.21.5.1.1.1.2477 OTU 1 seq prokMSA_id:13657 M96665.1 Desulfotomaculum australicum 2.21.5.1.1.1.2480 OTU 1 seq prokMSA_id:13659 U88891.1 Desulfotomaculum halophilum 2.21.5.1.1.1.2490 OTU 7 seqs prokMSA_id:20277 AY036904.1 Desulfotomaculum kuznetsovii str. 17 prokMSA_id:29438 AJ294427.1 Desulfotomaculum kuznetsovii str. DSM 6115 prokMSA_id:45024 AY036903.1 Desulfotomaculum kuznetsovii str. 17 prokMSA_id:47271 AF442687.1 Desulfotomaculum sp. str. WW1 prokMSA_id:67543 AY084078.1 Desulfotomaculum solfataricum str. V21 prokMSA_id:113058 AY918122.1 Desulfotomaculum salinum str. 435 prokMSA_id:113108 AY918123.1 Desulfotomaculum salinum str. 781 2.21.5.1.1.1.2496 OTU 2 seqs prokMSA_id:13664 Y11575.1 Desulfotomaculum thermosapovorans prokMSA_id:13681 Z26315.1 "Desulfotomaculum thermoacidovorans" 2.21.5.1.1.1.2530 OTU 2 seqs prokMSA_id:13683 AF072863.1 Anaerobic 'strain 7' complete isolate str. strain 7 'strain prokMSA_id:89131 AY327251.1 Cryptanaerobacter phenolicus str. LR7.2 2.21.5.1.1.1.2541 OTU 1 seq prokMSA_id:60012 AB091328.1 UASB granular sludge clone UT-2 2.21.5.1.1.1.2557 OTU 1 seq prokMSA_id:13661 L15628.1 Desulfotomaculum thermobenzoicum 2.21.5.1.1.1.279 OTU 2 seqs prokMSA_id:13905 AF050587.1 contaminated aquifer clone WCHB1-20 prokMSA_id:66938 AJ306756.1 DCP-dechlorinating consortium clone SHA-86 2.21.5.1.1.1.290 OTU 1 seq prokMSA_id:41028 AF351221.1 coal tar waste-contaminated groundwater clone 36-20 G+C 2.21.5.1.1.1.310 OTU 1 seq prokMSA_id:13911 AB026550.1 Desulfotomaculum nigrificans 2.21.5.1.1.1.313 OTU 1 seq prokMSA_id:13912 Y11579.1 Desulfotomaculum sp. str. DSM 7440 2.21.5.1.1.1.332 OTU 1 seq prokMSA_id:13914 U95951.1 Desulfotomaculum reducens str. MI-1 2.21.5.1.1.1.339 OTU 1 seq prokMSA_id:13918 AF053933.1 Desulfotomaculum putei str. SMCC W463 2.21.5.1.1.1.522 OTU 1 seq prokMSA_id:60013 AB091327.1 UASB granular sludge clone UT-1 2.21.5.1.1.1.894 OTU 1 seq prokMSA_id:47304 AF351222.1 coal tar waste-contaminated groundwater clone 36-22 G+C 2.21.6 gut clone group 57 seqs 2.21.6.1 Unclassified 57 seqs 2.21.6.1.1 Unclassified 57 seqs 2.21.6.1.1.1 sf_1 57 seqs 2.21.6.1.1.1.4214 OTU 1 seq prokMSA_id:82486 AY244958.1 cow rumen clone BS4 2.21.6.1.1.1.4279 OTU 1 seq prokMSA_id:20289 AJ229190.1 anoxic bulk soil flooded rice microcosm clone BSV28 clone 2.21.6.1.1.1.4298 OTU 1 seq prokMSA_id:83830 AY207065.1 human mouth clone P4PA_66 2.21.6.1.1.1.4312 OTU 2 seqs prokMSA_id:21985 AJ408959.1 human colonic clone HuCA3 prokMSA_id:44983 AJ408962.1 human colonic clone HuCA6 2.21.6.1.1.1.4356 OTU 1 seq prokMSA_id:15982 AB009228.1 rumen clone RFN80 bacterium 2.21.6.1.1.1.4375 OTU 1 seq prokMSA_id:15994 AB009218.1 rumen clone RFN70 bacterium 2.21.6.1.1.1.4376 OTU 1 seq prokMSA_id:15995 AB009227.1 rumen clone RFN8 bacterium 2.21.6.1.1.1.4397 OTU 1 seq prokMSA_id:16060 AF001698.1 rumen clone RC5 2.21.6.1.1.1.4400 OTU 1 seq prokMSA_id:16061 AF001699.1 rumen clone RC6 2.21.6.1.1.1.4428 OTU 1 seq prokMSA_id:16692 AB034012.1 rumen clone 3C0d-12 2.21.6.1.1.1.4432 OTU 1 seq prokMSA_id:33242 AF371831.1 phylotype OTU-366 swine intestine clone p-4524-4Wb3 2.21.6.1.1.1.4482 OTU 1 seq prokMSA_id:45569 AB034013.1 rumen clone 3C0d-14 2.21.6.1.1.1.454 OTU 1 seq prokMSA_id:29646 AB034035.1 rumen clone 3C0d-20 2.21.6.1.1.1.4556 OTU 1 seq prokMSA_id:24765 AB034027.1 rumen clone 4C0d-14 2.21.6.1.1.1.4577 OTU 2 seqs prokMSA_id:66942 AJ306752.1 DCP-dechlorinating consortium clone SHA-32 prokMSA_id:80201 AY188291.1 marine? clone KD1-101 2.21.6.1.1.1.4579 OTU 1 seq prokMSA_id:85102 AY244960.1 cow rumen clone BS6 2.21.6.1.1.1.4595 OTU 1 seq prokMSA_id:35260 AF371832.1 phylotype OTU-163 swine intestine clone p-2531-18B5 2.21.6.1.1.1.4616 OTU 35 seqs prokMSA_id:16158 AF001732.1 rumen clone RC30 prokMSA_id:27711 AB034023.1 rumen clone 4C0d-10 prokMSA_id:83170 AY244961.1 cow rumen clone BS7 prokMSA_id:99651 AB185532.1 rumen clone F23-C12 prokMSA_id:99726 AB185677.1 rumen clone U28-B11 prokMSA_id:100458 AB185694.1 rumen clone U28-D08 prokMSA_id:101178 AB185554.1 rumen clone F23-F11 prokMSA_id:101341 AB185784.1 rumen clone U29-E05 prokMSA_id:101594 AB185641.1 rumen clone F24-G09 prokMSA_id:102225 AB185717.1 rumen clone U28-F09 prokMSA_id:102369 AB185718.1 rumen clone U28-F10 prokMSA_id:102459 AB185803.1 rumen clone U29-G05 prokMSA_id:102529 AB185719.1 rumen clone U28-F11 prokMSA_id:102772 AB185805.1 rumen clone U29-G07 prokMSA_id:102940 AB185662.1 rumen clone U28-A07 prokMSA_id:103085 AB185663.1 rumen clone U28-A08 prokMSA_id:103514 AB185738.1 rumen clone U28-H11 prokMSA_id:104660 AB185758.1 rumen clone U29-B09 prokMSA_id:105501 AB185547.1 rumen clone F23-E10 prokMSA_id:106984 AB185569.1 rumen clone F23-H07 prokMSA_id:107815 AB185659.1 rumen clone U28-A04 prokMSA_id:109623 AY854330.1 herbivore gastrointestinal tract clone Thompsons42 prokMSA_id:110094 CR933318.1 municipal wastewater treatment plant clone 060A06_B_SD_P93 prokMSA_id:110707 AY854292.1 herbivore gastrointestinal tract clone CATTLE_30 prokMSA_id:111130 AY854355.1 herbivore gastrointestinal tract clone Thompsons77 prokMSA_id:111455 AY858402.1 gastrointestinal tract Grant's gazelle clone GRANT30 prokMSA_id:111485 AY858426.1 gastrointestinal tract Grant's gazelle clone GRANT49 prokMSA_id:111550 AY858392.1 gastrointestinal tract Grant's gazelle clone GRANT60 prokMSA_id:111574 AY858420.1 gastrointestinal tract Grant's gazelle clone GRANT41 prokMSA_id:111704 AY858431.1 gastrointestinal tract Grant's gazelle clone GRANT12 prokMSA_id:111764 AY858380.1 gastrointestinal tract Grant's gazelle clone GRANT57 prokMSA_id:111778 AY858436.1 gastrointestinal tract Grant's gazelle clone GRANT17 prokMSA_id:112137 AY858403.1 gastrointestinal tract Grant's gazelle clone GRANT31 prokMSA_id:112201 AY858395.1 gastrointestinal tract Grant's gazelle clone GRANT29 prokMSA_id:112217 AY858411.1 gastrointestinal tract Grant's gazelle clone GRANT76 2.21.6.1.1.1.4621 OTU 1 seq prokMSA_id:26721 AB034047.1 rumen clone 5C0d-14 2.21.6.1.1.1.649 OTU 1 seq prokMSA_id:23926 AB062775.1 termite gut homogenate clone BCf10-04 2.21.6.1.1.1.972 OTU 1 seq prokMSA_id:13866 AB009212.1 rumen clone RFN65 bacterium 2.21.7 Mollicutes 730 seqs 2.21.7.1 Acholeplasmatales 338 seqs 2.21.7.1.1 Acholeplasmataceae 338 seqs 2.21.7.1.1.1 sf_1 338 seqs 2.21.7.1.1.1.3932 OTU 1 seq prokMSA_id:15647 X80117.1 Mycoplasma species 2.21.7.1.1.1.3937 OTU 5 seqs prokMSA_id:63016 AF509321.1 Cynodon white leaf phytoplasma prokMSA_id:69014 AF248961.1 member RFLP group XIV subgroup clone BGWL#3 cynodontis prokMSA_id:83287 AJ550985.1 Candidatus Phytoplasma cynodontis BGWL-C2 prokMSA_id:83541 AJ550986.1 Candidatus Phytoplasma cynodontis BGWL-CA prokMSA_id:86379 AJ550984.1 Candidatus Phytoplasma cynodontis BGWL-C1 2.21.7.1.1.1.3945 OTU 109 seqs prokMSA_id:15663 M30790.1 MLO infecting Oenothera hookeri prokMSA_id:15679 X68338.1 str ACLR prokMSA_id:15680 M86340.1 str SAY prokMSA_id:15681 AF177384.1 Alfalfa stunt phytoplasma str. AlfS prokMSA_id:15682 U89378.1 Phytoplasma sp. str. rape phylody prokMSA_id:15683 U96616.1 Phytoplasma sp. str. STRAWB2 prokMSA_id:15684 X83870.1 phytoplasma str. KV prokMSA_id:15685 L33760.1 Tomato big bud mycoplasma-like organism prokMSA_id:15687 X68373.1 str AAY prokMSA_id:17288 AF356846.1 induces thickening Opuntia stem and pads prokMSA_id:18665 AF453328.1 Phytoplasma sp. str. PY1 prokMSA_id:20556 AJ274625.1 Sugarcane phytoplasma type G (AY) isolate str. AY prokMSA_id:21066 AF217247.1 Potato purple top phytoplasma prokMSA_id:21501 AF222066.1 Clover phyllody phytoplasma str. CPh prokMSA_id:21611 AF279271.1 Paulownia witches'-broom phytoplasma prokMSA_id:21676 AF222063.1 Aster yellows phytoplasma str. SAY prokMSA_id:28502 AF322645.1 Aster yellows phytoplasma str. AY1 prokMSA_id:30043 AF268404.1 Aster yellows phytoplasma 98UW166A prokMSA_id:31795 AF222064.1 Candidatus phytoplasma sp. subgroup: I- clone BB2 bud prokMSA_id:32190 AF322644.1 Aster yellows phytoplasma str. AY1 prokMSA_id:33517 AJ274626.1 Sugarcane phytoplasma type G (AY) variety Alu2 isolate str. AY prokMSA_id:36905 AF268403.1 Aster yellows phytoplasma 98UW159 prokMSA_id:37239 AF268406.1 Aster yellows phytoplasma 99UW93 prokMSA_id:42685 AF245439.1 Aster yellows phytoplasma prokMSA_id:44579 AF268407.1 Aster yellows phytoplasma B 99UW89 prokMSA_id:45677 AF268408.1 Aster yellows phytoplasma 99UW111 prokMSA_id:46328 AF268409.1 Aster yellows phytoplasma B 99UW108 prokMSA_id:46674 AF222065.1 Clover phyllody phytoplasma str. CPh prokMSA_id:48464 AF268405.1 USA: West Madison Wisconsin clone 16SrI-O prokMSA_id:50045 AF291682.1 Carrot proliferation phytoplasma str. CarrP prokMSA_id:51779 AF200431.1 Cirsium yellows phytoplasma str. CirY prokMSA_id:55023 AY075038.1 Mulberry dwarf phytoplasma str. MD-ko prokMSA_id:55493 AY102274.1 Valeriana yellows phytoplasma str. ValY prokMSA_id:56725 AF522457.1 Phytoplasma sp. str. PY1 prokMSA_id:60545 AY101386.1 Epilobium phyllody phytoplasma str. EpPh prokMSA_id:62523 D12569.2 Unknown 17 prokMSA_id:64235 AY102273.1 Valeriana yellows phytoplasma str. ValY prokMSA_id:66025 AY034089.1 Cherry little leaf phytoplasma str. CherLL prokMSA_id:66094 AF510323.1 Aconitum proliferation phytoplasma str. AcP phytoplasma prokMSA_id:68930 AF335107.1 'Rehmannia glutinosa var. purpurea' phytoplasma and tRNA-Ile var. prokMSA_id:71715 AB078436.1 Phytoplasma sp. str. WDWB-K prokMSA_id:76240 AF453416.1 Oat proliferation phytoplasma str. OatP prokMSA_id:77493 AF515771.1 'Helichrysum bracteatum' phytoplasma tRNA-Ile complete and 23S phytoplasma prokMSA_id:79786 AY192577.1 Paulownia witches'-broom phytoplasma prokMSA_id:82346 AF487779.1 Maize bushy stunt phytoplasma str. MBS prokMSA_id:84985 AY249247.1 Marigold phyllody phytoplasma prokMSA_id:86083 AY249248.1 Marigold phyllody phytoplasma prokMSA_id:87447 AY102275.1 Strawberry phylloid fruit phytoplasma str. StrawbPhF prokMSA_id:98886 AY685055.1 Peanut yellows phytoplasma prokMSA_id:98892 AY665676.1 USA: Hawaii prokMSA_id:99978 AY389820.2 Aster yellows phytoplasma str. AY-BW prokMSA_id:100138 AY389821.2 Aster yellows phytoplasma str. AY-S prokMSA_id:100290 AY389822.2 Aster yellows phytoplasma str. AY-BD2 prokMSA_id:100605 AY389824.2 Aster yellows phytoplasma str. AY-S prokMSA_id:100914 AY389826.2 Aster yellows phytoplasma str. AY-BD2 prokMSA_id:101075 AY389827.2 Aster yellows phytoplasma str. AY-WB prokMSA_id:101087 AY180933.1 Aster yellows phytoplasma str. CarD4 prokMSA_id:101236 AY389828.2 Aster yellows phytoplasma str. AY-WB prokMSA_id:101708 AY265210.1 Primrose virescence phytoplasma str. PRIVC prokMSA_id:101763 AY180937.1 Aster yellows phytoplasma str. Btsv4M.f.6 prokMSA_id:101862 AY180950.1 Aster yellows phytoplasma str. Btsv4C..2b prokMSA_id:101919 AY180938.1 Aster yellows phytoplasma str. BtsvS.i.4 prokMSA_id:102027 AY265212.1 Aster yellows phytoplasma str. CVB prokMSA_id:102074 AY180939.1 Aster yellows phytoplasma str. LDD1 prokMSA_id:102173 AY180952.1 Aster yellows phytoplasma str. Btsv4S.i1 prokMSA_id:102179 AY265213.1 Blueberry stunt phytoplasma str. BBS3 prokMSA_id:102324 AY265214.1 Chrysanthemum yellows phytoplasma str. CHRYM prokMSA_id:102394 AP006628.1 line OY-M isolate str. onion yellows prokMSA_id:102473 AY180954.1 Aster yellows phytoplasma str. ParsD1 prokMSA_id:102486 AY265215.1 Hydrangea phyllody phytoplasma str. HYDP prokMSA_id:102629 AY180955.1 Aster yellows phytoplasma str. BB prokMSA_id:102638 AY265216.1 Plantago virescence phytoplasma str. PVM prokMSA_id:102786 AY180956.1 Aster yellows phytoplasma str. CHRY prokMSA_id:102792 AY265217.1 Clover phyllody phytoplasma str. KVE prokMSA_id:102933 AY180957.1 Aster yellows phytoplasma str. AV2192 prokMSA_id:103084 AY265219.1 Hydrangea phyllody phytoplasma str. HYPh prokMSA_id:104846 AF503568.1 Croatia prokMSA_id:105423 AY180926.1 Aster yellows phytoplasma str. CarD1 prokMSA_id:105578 AY180927.1 Aster yellows phytoplasma str. Btsv2S.i.5 prokMSA_id:105673 AY180940.1 Aster yellows phytoplasma str. ParsD3 prokMSA_id:105730 AY180928.1 Aster yellows phytoplasma str. DillH2 prokMSA_id:105824 AY180941.1 Aster yellows phytoplasma str. PLD1 prokMSA_id:105846 AB052870.1 Rice orange leaf phytoplasma str. ROL prokMSA_id:105878 AY180929.1 Aster yellows phytoplasma str. PLD2 prokMSA_id:105975 AY180942.1 Aster yellows phytoplasma str. RgwdD2 prokMSA_id:106128 AY180943.1 Aster yellows phytoplasma str. Btsv2S.i.9 prokMSA_id:106289 AY180944.1 Aster yellows phytoplasma str. Btsv2C..17 prokMSA_id:106300 AY265205.1 Aster yellows phytoplasma str. IOWB prokMSA_id:106611 AY180946.1 Aster yellows phytoplasma str. ParsD4 prokMSA_id:106616 AY265207.1 Hydrangea phyllody phytoplasma str. HyPH prokMSA_id:106715 AY265220.1 Blueberry stunt phytoplasma str. BBS1 prokMSA_id:106767 AY180947.1 Aster yellows phytoplasma str. CabD3 prokMSA_id:106919 AY180948.1 Aster yellows phytoplasma str. OnionD1 prokMSA_id:106925 AY265209.1 Aster yellows phytoplasma str. AVUT prokMSA_id:107078 AY180949.1 Aster yellows phytoplasma str. Bstv2C..28b prokMSA_id:107692 AY685054.1 Eucalyptus yellows and witches'-broom phytoplasma prokMSA_id:108383 NC_005303.1 Onion yellows phytoplasma OY-M prokMSA_id:108979 AY787139.1 Cassava witches'-broom phytoplasma prokMSA_id:108981 AY787141.1 Morinda yellows phytoplasma prokMSA_id:109639 AY744071.1 Hyacinth virescence phytoplasma str. HyacVir prokMSA_id:110115 AY734453.1 Barley deformation phytoplasma str. BaDef prokMSA_id:110342 AY744072.1 Hyacinth virescence phytoplasma str. HyacVir prokMSA_id:110409 AY744070.1 Silene virescence phytoplasma str. SiVir prokMSA_id:110907 AY734454.1 Lithuania isolate str. ApSL prokMSA_id:111397 AY566302.1 Ash witches'-broom phytoplasma prokMSA_id:112232 AY265208.1 Candidatus Phytoplasma asteris prokMSA_id:113665 AY557614.1 Aster yellows phytoplasma prokMSA_id:113712 AY554265.1 Aster yellows phytoplasma prokMSA_id:114366 AY549311.1 Aster yellows phytoplasma 2.21.7.1.1.1.3948 OTU 1 seq prokMSA_id:64533 AF515637.1 Iran isolate str. 21 2.21.7.1.1.1.3955 OTU 1 seq prokMSA_id:64303 AF521672.1 Weeping tea tree witches'-broom phytoplasma tree 2.21.7.1.1.1.3961 OTU 1 seq prokMSA_id:15644 L33766.1 Clover yellow edge mycoplasma-like organism 2.21.7.1.1.1.3963 OTU 3 seqs prokMSA_id:48457 AF353090.1 Loofah witches'-broom phytoplasma str. LfWB phytoplasma prokMSA_id:69009 AF086621.2 Loofah witches'-broom phytoplasma prokMSA_id:69018 AF248956.1 Loofah witches'-broom phytoplasma str. LfWB phytoplasma 2.21.7.1.1.1.3975 OTU 5 seqs prokMSA_id:15597 AF175304.1 Clover yel edge phytoplasma str. CYE-C prokMSA_id:15599 AF173558.1 Clover yel edge phytoplasma str. CYE-L prokMSA_id:37584 AF274876.1 Strawberry leafy fruit phytoplasma str. SLF prokMSA_id:38649 AF302841.1 Black raspberry witches'-broom phytoplasma str. BRWB witches'-broom prokMSA_id:62836 AY049029.1 Gaillardia phyllody phytoplasma str. GaiPh phytoplasma 2.21.7.1.1.1.3976 OTU 6 seqs prokMSA_id:15598 AF060875.1 Phytoplasma sp. VGYIII; group 16SrIII-I diseased grapevine (Vitis vinifera L.) plant Virginia isolate str. VGYIII prokMSA_id:17222 AF244363.1 Black locust witches'-broom phytoplasma str. BLWB witches'-broom prokMSA_id:18521 AF190227.1 Walnut witches'-broom phytoplasma str. WWB phytoplasma prokMSA_id:33747 AF190223.1 Poinsettia branch-inducing phytoplasma str. PoiBI phytoplasma prokMSA_id:38010 AF190228.1 Spiraea stunt phytoplasma str. SP1 prokMSA_id:51281 AF190226.1 Walnut witches'-broom phytoplasma str. WWB phytoplasma 2.21.7.1.1.1.3977 OTU 1 seq prokMSA_id:67193 AF495882.1 Chinaberry yellows phytoplasma str. CbY1 2.21.7.1.1.1.3983 OTU 2 seqs prokMSA_id:21971 AF412968.1 Acholeplasma axanthum str. S-743(T) prokMSA_id:30323 AJ311394.1 Acholeplasma axanthum str. 118 2.21.7.1.1.1.3990 OTU 1 seq prokMSA_id:15689 U14906.1 Acholeplasma oculi 2.21.7.1.1.1.4002 OTU 2 seqs prokMSA_id:15651 X92869.1 Phytoplasma sp. prokMSA_id:93038 AJ430067.1 Candidatus Phytoplasma mali SPAR701 2.21.7.1.1.1.4003 OTU 1 seq prokMSA_id:15653 X77372.1 Phytoplasma sp. str. plum leptonecrosis 2.21.7.1.1.1.4004 OTU 1 seq prokMSA_id:15582 L33764.1 Loofah witches'-broom mycoplasma-like organism 2.21.7.1.1.1.4005 OTU 1 seq prokMSA_id:15690 U14904.1 Acholeplasma oculi 2.21.7.1.1.1.4028 OTU 1 seq prokMSA_id:15674 Y16391.1 Bindweed yellows phytoplasma 2.21.7.1.1.1.4030 OTU 8 seqs prokMSA_id:15667 U43570.1 Phormium yellow leaf phytoplasma prokMSA_id:15668 X95706.1 Mycoplasma sp. prokMSA_id:15669 L76865.1 Candidatus Phytoplasma australiense prokMSA_id:15670 Y10095.1 Papaya dieback phytoplasma prokMSA_id:15671 AJ243044.1 Strawberry green petal phytoplasma str. SGP petal prokMSA_id:15672 AJ243045.1 Strawberry lethal yellows phytoplasma str. SLY yellows prokMSA_id:15675 U43569.1 Phormium yellow leaf phytoplasma prokMSA_id:106270 AY377868.1 Strawberry virescence phytoplasma 3101 2.21.7.1.1.1.4041 OTU 6 seqs prokMSA_id:15638 U18747.1 Mycoplasma-like organism prokMSA_id:23748 AF361020.1 USA: Florida isolate str. PanD prokMSA_id:65941 AF498309.1 Coconut lethal yellowing phytoplasma str. Florida (LY-C2) yellowing prokMSA_id:65943 AF498308.1 Coconut lethal yellowing phytoplasma str. Florida (LYF-C5) yellowing prokMSA_id:65944 AF498307.1 Coconut lethal yellowing phytoplasma str. Jamaica (LYJ-C8) yellowing prokMSA_id:108988 AY572029.2 Coconut lethal yellowing phytoplasma 2.21.7.1.1.1.4044 OTU 6 seqs prokMSA_id:15591 L33733.1 Canadian peach X mycoplasma-like organism prokMSA_id:15594 L04682.1 Western X mycoplasma-like organism prokMSA_id:18269 AF236123.1 Red suture phytoplasma prokMSA_id:48082 AF236122.1 Little peach phytoplasma prokMSA_id:52044 AF236121.1 Peach rosette phytoplasma prokMSA_id:83476 AF533231.1 Western X phytoplasma tRNA-Ser immunodominant (idpA) (dnaX) -directed polymerase (rpoE) (pssA) phosphatidylserine decarboxylase (psd) CTP synthase (ctrA) chromosome replication initiation protein (dna 2.21.7.1.1.1.4045 OTU 14 seqs prokMSA_id:53311 AF147707.1 Chayote witches'-broom phytoplasma str. ChWBIII(Mor5) phytoplasma prokMSA_id:54971 AF147706.1 Chayote witches'-broom phytoplasma str. ChWBIII(Ch10) phytoplasma prokMSA_id:55569 D12580.2 str tsuwabuki witches' broom mycoplasma-like organism prokMSA_id:58988 AY081816.1 GDIII prokMSA_id:58989 AY081817.1 Chinaberry yellows phytoplasma prokMSA_id:63392 AF522458.1 Phytoplasma sp. str. PY3 prokMSA_id:66027 AY034090.1 Blueberry proliferation phytoplasma str. BBP phytoplasma prokMSA_id:66819 AF373106.1 Cirsium white leaf phytoplasma str. CirWL prokMSA_id:66824 AF370119.1 Dandelion virescence phytoplasma str. DanVir phytoplasma prokMSA_id:67362 AF495657.1 Chinaberry yellows phytoplasma str. CbY18 prokMSA_id:69885 AF056094.1 Sugarcane yellows phytoplasma type I strain tRNA-Ile complete and 23S isolate str. ScYP I-Barb phytoplasma prokMSA_id:73130 AF056095.1 Sugarcane yellows phytoplasma type I strain tRNA-Ile complete and 23S isolate str. ScYP I-Afr phytoplasma prokMSA_id:87775 AF510724.1 Milkweed yellows phytoplasma str. MW1 prokMSA_id:102742 AY731819.1 Solanum quitoense machorreo phytoplasma 2.21.7.1.1.1.4046 OTU 5 seqs prokMSA_id:15583 L33735.1 Pigeon pea witches'-broom mycoplasma-like organism prokMSA_id:55620 AF515638.1 Lactuca serriola phytoplasma str. P12 prokMSA_id:63013 AF509325.1 Sorghum grassy shoot phytoplasma variant II shoot prokMSA_id:63014 AF509324.1 Sorghum grassy shoot phytoplasma variant I shoot prokMSA_id:106149 AB052872.1 Brachiaria grass white leaf phytoplasma str. BraWL-KK 2.21.7.1.1.1.4053 OTU 3 seqs prokMSA_id:15613 Y17055.1 Phytoplasma sp. str. StLL prokMSA_id:24602 AJ274622.1 Sugarcane phytoplasma type J (StLL) isolate str. StLL prokMSA_id:69575 AJ289192.2 Stylosanthes little leaf phytoplasma 2.21.7.1.1.1.4054 OTU 2 seqs prokMSA_id:15590 Y15866.1 Phytoplasma sp. str. ViLL prokMSA_id:25555 AJ289195.1 Vigna little leaf phytoplasma 2.21.7.1.1.1.4055 OTU 3 seqs prokMSA_id:15691 U14905.1 Acholeplasma laidlawii prokMSA_id:15692 M23932.1 Acholeplasma laidlawii prokMSA_id:83638 AY257485.1 Mesoplasma pleciae str. ATCC 49582; PS-1 2.21.7.1.1.1.4060 OTU 11 seqs prokMSA_id:43871 AF237615.2 Carludovica palmata leaf yellowing phytoplasma leaf prokMSA_id:64249 AF500334.1 Phytoplasma sp. str. LfY5(PE65)-Oaxaca prokMSA_id:64250 AF500333.1 Phytoplasma sp. str. LfY5(PE56)-Oaxaca prokMSA_id:64251 AF500331.1 Phytoplasma sp. str. LfY4(MA5)-Oaxaca prokMSA_id:64252 AF500329.1 Phytoplasma sp. str. LfY1-Guerrero prokMSA_id:64253 AF500330.1 Phytoplasma sp. str. LfY4(MA3)-Oaxaca prokMSA_id:64254 AF500332.1 Phytoplasma sp. str. LfY2(Alv2)-Guerrero prokMSA_id:68903 AF434989.1 Texas Phoenix palm phytoplasma tRNA-Ile complete and 23S isolate str. TPD palm prokMSA_id:72718 U18753.2 Mycoplasma-like organism prokMSA_id:100479 AY497480.1 Kentia decline phytoplasma () prokMSA_id:100633 AY497481.1 Kentia decline phytoplasma (rrnB) 2.21.7.1.1.1.4064 OTU 18 seqs prokMSA_id:15654 X68374.1 str PPER prokMSA_id:15655 Y11933.1 Phytoplasma sp. str. ESFY prokMSA_id:15656 X76426.2 Unknown 11 prokMSA_id:15657 Y16392.1 Southern Italy prokMSA_id:15658 Y16394.1 California prokMSA_id:15659 X76425.1 Unknown 12 prokMSA_id:15661 X68375.2 str AT prokMSA_id:33402 AF319550.1 Candidatus Phytoplasma pyri PDE15 prokMSA_id:54668 AY029540.1 European stone fruit yellows phytoplasma and 23S genes prunorum prokMSA_id:69015 AF248958.1 member RFLP group X subgroup clone APU#1 prokMSA_id:86991 AJ542545.1 Prunus armeniaca isolate str. ESFY-G2 prokMSA_id:87313 AJ542544.1 Prunus persica isolate str. ESFY-G1 prokMSA_id:88051 AJ542543.1 Pyrus communis isolate str. PD1 prokMSA_id:100170 AJ542541.1 Malus domestica isolate str. AP15 prokMSA_id:100325 AJ542542.1 Malus domestica isolate str. AT1/93 prokMSA_id:107279 AJ575105.1 Candidatus Phytoplasma prunorum tRNA-Ile and 23S () strain isolate str. ESFY-215 prokMSA_id:107425 AJ575106.1 Candidatus Phytoplasma prunorum tRNA-Ile and 23S () strain isolate str. ESFY-173 prokMSA_id:107569 AJ575107.1 Candidatus Phytoplasma prunorum () tRNA-Ile and 23S () isolate str. ESFY-63 2.21.7.1.1.1.4066 OTU 1 seq prokMSA_id:15641 Y15865.1 Phytoplasma sp. str. GaLL 2.21.7.1.1.1.4070 OTU 3 seqs prokMSA_id:15588 Y18052.1 Knautia arvensis phyllody phytoplasma prokMSA_id:26945 AF361017.1 Honduras isolate str. GLL-Hon prokMSA_id:92236 AY247417.1 Phaseolus lunatus phytoplasma str. Caribben PPWB 2.21.7.1.1.1.4078 OTU 1 seq prokMSA_id:54260 AF147708.1 Candidatus Phytoplasma brasiliense 2.21.7.1.1.1.4083 OTU 1 seq prokMSA_id:53611 AJ310849.2 Phytoplasma sp. PinP 2.21.7.1.1.1.4084 OTU 1 seq prokMSA_id:15586 X76430.1 Vaccinium phytopathogen isolate VAC 2.21.7.1.1.1.4086 OTU 1 seq prokMSA_id:15589 Y16389.1 Picris echioides yellows phytoplasma 2.21.7.1.1.1.4092 OTU 1 seq prokMSA_id:60694 AY083605.1 Australia isolate str. BVGY 2.21.7.1.1.1.4096 OTU 1 seq prokMSA_id:15664 L33762.1 Clover phyllody mycoplasma-like organism 2.21.7.1.1.1.4101 OTU 1 seq prokMSA_id:32876 AB010425.2 -group I phytoplasma~synonym:Japanese Hydrangea phyllody phytoplasma japonicum 2.21.7.1.1.1.4108 OTU 1 seq prokMSA_id:62521 D12581.2 Unknown 19 2.21.7.1.1.1.4115 OTU 25 seqs prokMSA_id:15580 U15442.1 Mycoplasma-like organism prokMSA_id:15581 Y16393.1 Picris echioides phyllody phytoplasma prokMSA_id:15592 L33765.1 Peanut witches'-broom mycoplasma-like organism prokMSA_id:15609 L33770.1 Sweet potato witches'-broom mycoplasma-like organism prokMSA_id:15615 X76433.1 Mycoplasma species prokMSA_id:15617 X90591.1 "Mollicutes sp." prokMSA_id:15618 Y08173.1 Phytoplasma sp prokMSA_id:15619 Y10096.1 Papaya mosaic phytoplasma prokMSA_id:15620 Y10097.1 Papaya yel crinckle phytoplasma prokMSA_id:15621 AB026155.1 Phytoplasma sp. subsp. Gerbera phyllody phytoplasma str. GPh Gph Gph prokMSA_id:15622 AF028813.1 Chinese pigeon pea witches'-broom phytoplasma pea prokMSA_id:15624 X83432.1 "Mollicutes species" prokMSA_id:15625 Y16390.1 Italian alfalfa witches-broom phytoplasma prokMSA_id:15626 Y15863.1 Phytoplasma sp. str. BoLL prokMSA_id:18469 AF320575.1 Phytoplasma sp. pathovar mosaic-inducing prokMSA_id:20350 AF329315.1 Mexican potato purple top phytoplasma prokMSA_id:28401 AF200718.1 Phytoplasma sp. infecting cacti prokMSA_id:41747 AJ289191.1 Pigeon pea little leaf phytoplasma prokMSA_id:42358 AJ293216.1 Cactus witches'-broom phytoplasma YNO1 prokMSA_id:48933 AJ289193.2 Sweet potato little leaf phytoplasma str. V4 little prokMSA_id:58026 AY144608.1 potato prokMSA_id:60303 AF438413.1 Omani alfalfa witches'-broom phytoplasma prokMSA_id:73858 AJ295330.1 Australia:North Queensland prokMSA_id:96747 AY169322.1 Alfalfa witches'-broom phytoplasma prokMSA_id:112027 AF331973.1 Cactus witches'-broom phytoplasma str. CWB1 2.21.7.1.1.1.4127 OTU 77 seqs prokMSA_id:15593 L33763.1 Elm Yellows Mycoplasma-like organism prokMSA_id:15602 X76560.1 str FD prokMSA_id:15603 AF189214.1 synonym: Candidatus Phytoplasma ulmi; fragment EY1-#1 clone EY1 ulmi prokMSA_id:15604 AF122910.1 synonym: Candidatus Phytoplasma ulmi isolate str. EY1 ulmi prokMSA_id:15605 AF122911.1 synonym: Candidatus Phytoplasma ulmi isolate str. WVEY ulmi prokMSA_id:15606 AF122912.1 synonym: Candidatus Phytoplasma ulmi isolate str. HD1 phytoplasma prokMSA_id:15607 Y16387.1 Alder yellows phytoplasma prokMSA_id:15608 Y16395.1 Rubus stunt phytoplasma prokMSA_id:15611 X83431.1 Mycoplasmal species prokMSA_id:15612 AF036354.1 'Fragaria multicipita' phytoplasma isolate str. FRA9083 prokMSA_id:15614 L33761.1 Clover proliferation mycoplasma-like organism prokMSA_id:15623 X68376.1 Phytoplasma sp. str. elm yellows prokMSA_id:15628 L33759.1 Ash yellows mycoplasma-like organism prokMSA_id:15630 X68339.1 Mycoplasma-like organism prokMSA_id:15631 AF189215.1 synonym: Candidatus Phytoplasma fraxini; fragment AshY1-#1 clone AshY1 fraxini prokMSA_id:15632 AF092209.1 Candidatus Phytoplasma fraxini isolate str. AshY1 fraxini prokMSA_id:15633 AF105315.1 synonym: Candidatus Phytoplasma fraxini isolate str. AshY3 fraxini prokMSA_id:15634 AF105316.1 synonym: Candidatus Phytoplasma fraxini isolate str. AshY5 fraxini prokMSA_id:15635 AF105317.1 synonym: Candidatus Phytoplasma fraxini isolate str. LWB3 fraxini prokMSA_id:17967 AY028789.1 Alder yellows phytoplasma str. ALY-L prokMSA_id:20661 AF190224.1 phytoplasma clone MC9 prokMSA_id:25887 AF176319.1 Flavescence doree phytoplasma str. FD70 prokMSA_id:42718 AF279272.1 Zizyphus jujube witches'-broom phytoplasma ziziphi prokMSA_id:43247 AF190225.1 phytoplasma clone MC10 prokMSA_id:45354 AF363066.1 Spain prokMSA_id:50829 AF409069.1 Clover proliferation phytoplasma strain isolate str. EY-IL 2 trifolii prokMSA_id:52099 AF409070.1 Clover proliferation phytoplasma strain isolate str. EY-IL 1 trifolii prokMSA_id:54286 AY072722.1 South Korea isolate str. JWB-Ko prokMSA_id:55407 AF305240.1 China: south isolate str. JWB-Ch prokMSA_id:60512 AF411592.1 Erigeron witches'-broom phytoplasma str. RPWB phytoplasma prokMSA_id:66024 AY034608.1 Erigeron witches'-broom phytoplasma str. EriWB phytoplasma prokMSA_id:68906 AF228052.1 Brinjal little leaf phytoplasma str. BLL-Bd Brinjal-Bd leaf prokMSA_id:69030 AF228053.1 Periwinkle little leaf phytoplasma str. PLL-Bd leaf prokMSA_id:69629 AF305198.1 Virginia creeper phytoplasma str. VC-Fl prokMSA_id:69655 AF268895.1 USA: Illinois Arlington Heights prokMSA_id:77772 AB052879.1 Phytoplasma sp. str. JWB-Ko prokMSA_id:77969 AB052878.1 Phytoplasma sp. str. JWB-F prokMSA_id:78043 AB052877.1 Phytoplasma sp. str. JWB-G2 prokMSA_id:78260 AB052876.1 Phytoplasma sp. str. JWB-G1 prokMSA_id:78322 AB052875.1 Phytoplasma sp. str. JWB-Ky prokMSA_id:80823 AB076404.1 Potato witches'-broom phytoplasma prokMSA_id:82781 AY270156.1 Centaurea solstitialis virescence phytoplasma CSV virescence prokMSA_id:86747 AY197642.1 Alder yellows phytoplasma str. ALY882 prokMSA_id:86755 AY197649.1 Rubus stunt phytoplasma str. Rus400 prokMSA_id:86783 AY283184.1 Sunshine tree witches'-broom phytoplasma prokMSA_id:86811 AY197660.1 subgroup: 16SrV-B isolate str. PY- prokMSA_id:86835 AY197659.1 Cherry lethal yellows phytoplasma str. CLY-5 prokMSA_id:86864 AY197643.1 Flavescence doree phytoplasma str. FD70 prokMSA_id:86960 AY197658.1 subgroup: 16SrV- isolate str. EY-627 prokMSA_id:87003 AY197645.1 Flavescence doree phytoplasma str. FD-C prokMSA_id:87073 AY197657.1 subgroup: 16SrV- isolate str. EY-626 prokMSA_id:87229 AY197653.1 subgroup: 16SrV-C isolate str. SpaWB251 prokMSA_id:87307 AY197655.1 subgroup: 16SrV- isolate str. EY1 prokMSA_id:87317 AY197647.1 Alder yellows phytoplasma str. ALY1068 prokMSA_id:87456 AY197661.1 Jujube witches'-broom phytoplasma str. JWB prokMSA_id:87547 AY197644.1 Flavescence doree phytoplasma str. FD-D prokMSA_id:87635 AY197646.1 Alder yellows phytoplasma str. ALY prokMSA_id:87732 AY197654.1 Hemp dogbane yellows phytoplasma str. HD1 prokMSA_id:87774 AY197650.1 Rubus stunt phytoplasma str. Rus971 prokMSA_id:87911 AY197651.1 Rubus stunt phytoplasma str. RuSR19 prokMSA_id:87917 AY197656.1 subgroup: 16SrV- isolate str. EY-125 prokMSA_id:87980 AY197648.1 Rubus stunt phytoplasma str. RuS prokMSA_id:88039 AY197652.1 subgroup: 16SrV-C isolate str. SpaWB229 prokMSA_id:91186 AY332659.1 Nectarine yellows phytoplasma str. NecY-In1 prokMSA_id:91757 AY332658.1 subgroup: 16SrV-B isolate str. PY-In2 prokMSA_id:99886 AY390261.1 Canada: Alberta isolate str. CP prokMSA_id:103734 AY576685.1 Paper mulberry witches'-broom phytoplasma prokMSA_id:104587 AY500818.1 Potato witches'-broom phytoplasma str. PWB prokMSA_id:106863 AY147038.1 Argentinian alfalfa witches'-broom phytoplasma str. 16SrVII-C prokMSA_id:107828 AY500130.1 subgroup: VI- clone CP#2 prokMSA_id:109902 AY692279.1 Columbia Basin potato purple top phytoplasma -23S intergenic spacer tRNA-Ile complete and 23S isolate str. BLTVA prokMSA_id:110523 AY496005.1 potato isolate str. PPT-Wa8 prokMSA_id:110757 AY496004.1 potato isolate str. PPT-Wa4 prokMSA_id:110809 AY692280.1 Columbia Basin potato purple top phytoplasma -23S intergenic spacer tRNA-Ile complete and 23S isolate str. BLTVA prokMSA_id:111089 AY496003.1 Dry bean phyllody phytoplasma str. DBPh3 prokMSA_id:111110 AY496002.1 Dry bean phyllody phytoplasma str. DBPh2 prokMSA_id:112157 AY500817.1 Vinca virescence phytoplasma 2.21.7.1.1.1.4138 OTU 1 seq prokMSA_id:23582 AF361018.1 Ethiopia isolate str. GLL-Eth 2.21.7.1.1.1.4139 OTU 1 seq prokMSA_id:15636 X76432.1 Unknown 10 2.21.7.1.1.1.4145 OTU 1 seq prokMSA_id:15640 X76429.1 Mycoplasma species 2.21.7.1.1.1.4146 OTU 1 seq prokMSA_id:15646 X83438.1 "Mollicutes species" 2.21.7.1.1.1.4147 OTU 2 seqs prokMSA_id:15648 Y13912.1 Phytoplasma sp. str. Coconut lethal yellowing disease prokMSA_id:15649 Y14175.1 Phytoplasma sp. str. Coconut lethal yellowing disease 2.21.7.2 Anaeroplasmatales 45 seqs 2.21.7.2.1 Erysipelotrichaceae 45 seqs 2.21.7.2.1.1 sf_3 45 seqs 2.21.7.2.1.1.144 OTU 1 seq prokMSA_id:15720 L34616.1 Eubacterium cylindroides 2.21.7.2.1.1.3939 OTU 2 seqs prokMSA_id:15734 M23732.1 Clostridium innocuum prokMSA_id:15735 AF028352.1 Clostridium aff. innocuum CM970 2.21.7.2.1.1.3943 OTU 2 seqs prokMSA_id:36159 AB030219.1 Coprobacillus cateniformis prokMSA_id:74862 AB030218.1 Coprobacillus cateniformis str. JCM 10603 2.21.7.2.1.1.3952 OTU 2 seqs prokMSA_id:77904 AB055907.1 Erysipelothrix rhusiopathiae str. Pecs 56 prokMSA_id:88075 AJ550617.1 Erysipelothrix inopinata str. 143-02 2.21.7.2.1.1.3956 OTU 1 seq prokMSA_id:15716 X73441.1 Clostridium spiroforme 2.21.7.2.1.1.3959 OTU 2 seqs prokMSA_id:15711 AF028350.1 Clostridium cocleatum CM972 prokMSA_id:45363 Y18188.1 Clostridium cocleatum str. DSM 1551 2.21.7.2.1.1.3965 OTU 3 seqs prokMSA_id:59904 AY133091.1 TCE-contaminated site clone ccslm238 prokMSA_id:89878 AY297808.1 waterlogged archaeological wood clone pACH93 prokMSA_id:104922 AY532555.1 uranium-contaminated aquifer clone 1013-1-CG43 2.21.7.2.1.1.3981 OTU 1 seq prokMSA_id:60757 AY128088.1 phototrophic sludge clone PSB-M-3 2.21.7.2.1.1.3986 OTU 1 seq prokMSA_id:54730 AF371517.1 phylotype OTU-76 swine intestine clone p-2772-24E5 2.21.7.2.1.1.3993 OTU 1 seq prokMSA_id:15715 X75908.1 Clostridium spiroforme 2.21.7.2.1.1.4006 OTU 1 seq prokMSA_id:15728 Y11466.1 Holdemania filiformis str. ATCC 51649 2.21.7.2.1.1.4007 OTU 1 seq prokMSA_id:15729 L34683.1 Eubacterium tortuosum 2.21.7.2.1.1.4011 OTU 1 seq prokMSA_id:15730 M23728.1 Erysipelothrix rhusiopathiae 2.21.7.2.1.1.4013 OTU 1 seq prokMSA_id:42372 AB018187.1 cylindroides str. JCM 7787 2.21.7.2.1.1.4036 OTU 2 seqs prokMSA_id:39574 AF371516.1 phylotype OTU-188 swine intestine clone p-1630-c5 prokMSA_id:44294 AF371515.1 phylotype OTU-188 swine intestine clone p-326-a3 2.21.7.2.1.1.4038 OTU 6 seqs prokMSA_id:16818 AY044916.1 Bulleidia moorei str. JCM 10645 prokMSA_id:19191 AB031058.1 Bulleidia moorei str. JCM 10647 RCA59-77 prokMSA_id:21980 AB031056.1 Bulleidia moorei str. JCM 10645 RCA59-74 prokMSA_id:22422 AY044915.1 Bulleidia moorei str. AHP 13983 prokMSA_id:41366 AB031057.1 Bulleidia moorei str. JCM 10646 RCA59-75 prokMSA_id:41537 AY005052.1 subgingival dental plaque clone K010 2.21.7.2.1.1.4065 OTU 3 seqs prokMSA_id:15709 X73440.1 Clostridium ramosum prokMSA_id:15712 M23731.1 Clostridium ramosum prokMSA_id:102627 AY699288.1 Clostridium ramosum M91 2.21.7.2.1.1.4068 OTU 1 seq prokMSA_id:42560 AF371518.1 phylotype OTU-189 swine intestine clone p-75-a5 2.21.7.2.1.1.4071 OTU 1 seq prokMSA_id:52474 AF304435.1 genotype: vanB isolate str. MLG055 2.21.7.2.1.1.4072 OTU 1 seq prokMSA_id:41982 AF429362.1 chicken intestinal s clone CCAJG27 2.21.7.2.1.1.4076 OTU 1 seq prokMSA_id:21822 AB030220.1 Coprobacillus cateniformis str. JCM 10605 2.21.7.2.1.1.4091 OTU 3 seqs prokMSA_id:15722 Z36271.1 Eubacterium species prokMSA_id:15723 U13036.1 Eubacterium species prokMSA_id:31844 AF220064.1 Bulleidia extructa str. DSM 13220 2.21.7.2.1.1.4098 OTU 1 seq prokMSA_id:15739 L34682.1 Eubacterium dolichum 2.21.7.2.1.1.4099 OTU 1 seq prokMSA_id:49837 AB018186.1 cylindroides str. JCM 7786 2.21.7.2.1.1.4125 OTU 1 seq prokMSA_id:43628 AF371513.1 phylotype OTU-245 swine intestine clone p-2731-24E5 2.21.7.2.1.1.4143 OTU 1 seq prokMSA_id:37902 AF150695.1 Elbe River snow isolate Iso15_3 Iso15_3_1053 2.21.7.2.1.1.747 OTU 1 seq prokMSA_id:15721 L34617.2 Eubacterium cylindroides 2.21.7.2.1.1.768 OTU 2 seqs prokMSA_id:15726 U21666.1 Erysipelothrix sp. str. Vadkasca prokMSA_id:15727 U21665.1 Erysipelothrix tonsillarum str. CCUG 31352T 2.21.7.3 Entomoplasmatales 31 seqs 2.21.7.3.1 Entomoplasmataceae 26 seqs 2.21.7.3.1.1 sf_1 3 seqs 2.21.7.3.1.1.4074 OTU 1 seq prokMSA_id:41875 AF371522.1 phylotype OTU-182 swine intestine clone p-2013-s959-5 2.21.7.3.1.1.4124 OTU 1 seq prokMSA_id:71687 AF132233.1 adult human fecal matter clone adhufec279 2.21.7.3.1.1.4132 OTU 1 seq prokMSA_id:21042 AF371523.1 phylotype OTU-182 swine intestine clone p-974-s962-5 2.21.7.3.1.2 sf_2 23 seqs 2.21.7.3.1.2.3941 OTU 9 seqs prokMSA_id:15791 M24478.1 Mycoplasma sp. 2 prokMSA_id:15792 AF042194.1 Mycoplasma monodon str. Australiain prokMSA_id:70272 AF305693.1 Mesoplasma entomophilum str. TAC; ATCC 43706 prokMSA_id:71542 AF300327.1 Mesoplasma florum prokMSA_id:76006 AY166704.1 Mesoplasma chauliocola str. ATCC 49578 prokMSA_id:77531 AY174170.1 Mesoplasma grammopterae str. GRUA-1; ATCC 49580 prokMSA_id:79099 AY187288.1 Mesoplasma tabanidae str. BARC 857; ATCC 49584 prokMSA_id:98965 NC_006055.1 Mesoplasma florum L1 str. L1; ATCC 33453 prokMSA_id:100309 AE017263.1 Mesoplasma florum L1 str. L1; ATCC 33453 2.21.7.3.1.2.3942 OTU 1 seq prokMSA_id:78432 AY177627.1 Mesoplasma photuris str. ATCC 49581; PUPA-2 2.21.7.3.1.2.3960 OTU 5 seqs prokMSA_id:15805 AJ132412.1 Spiroplasma sp prokMSA_id:29463 AB048263.1 Spiroplasma sp. str. SM prokMSA_id:41072 AJ006775.1 Spiroplasma sp prokMSA_id:49332 AB030022.1 Antonina crawii (Insecta Homoptera Pseudooccidae) symbiont Antonina prokMSA_id:53927 AJ245996.1 Spiroplasma sp 2.21.7.3.1.2.3966 OTU 2 seqs prokMSA_id:15788 L12056.1 Mesoplasma seiffertii prokMSA_id:85011 AY231458.1 Mesoplasma syrphidae str. ATCC 51578; YJS 2.21.7.3.1.2.4012 OTU 1 seq prokMSA_id:75831 AY168929.2 Mesoplasma corruscae str. ATCC 49579 2.21.7.3.1.2.4034 OTU 1 seq prokMSA_id:15756 AF036954.1 Entomoplasma freundtii 2.21.7.3.1.2.4047 OTU 2 seqs prokMSA_id:70686 AF547212.1 Entomoplasma lucivorax str. PIPN-2 ATCC 49196 prokMSA_id:75155 AY155670.1 Entomoplasma luminosum str. ATCC 49195; PIMN-1 2.21.7.3.1.2.4110 OTU 1 seq prokMSA_id:71794 AF303132.1 Mesoplasma lactucae str. 831-C4; ATCC 49193 ATCC 2.21.7.3.1.2.4112 OTU 1 seq prokMSA_id:77171 AY157871.1 Entomoplasma somnilux str. ATCC 49194 2.21.7.3.2 Spiroplasmataceae 5 seqs 2.21.7.3.2.1 sf_1 5 seqs 2.21.7.3.2.1.4050 OTU 3 seqs prokMSA_id:15802 M23942.1 Spiroplasma citri prokMSA_id:15803 X63781.1 Spiroplasma citri prokMSA_id:84791 AY166838.1 Mollicutes clone type VI 2.21.7.3.2.1.4088 OTU 1 seq prokMSA_id:15800 M24662.1 Spiroplasma mirum 2.21.7.3.2.1.4120 OTU 1 seq prokMSA_id:15797 M24476.1 Spiroplasma taiwanense 2.21.7.4 Mycoplasmatales 299 seqs 2.21.7.4.1 Mycoplasmataceae 295 seqs 2.21.7.4.1.1 sf_15 1 seq 2.21.7.4.1.1.4087 OTU 1 seq prokMSA_id:53013 AF412978.1 Mycoplasma cynos str. H831(T) 2.21.7.4.1.2 sf_1 162 seqs 2.21.7.4.1.2.3927 OTU 4 seqs prokMSA_id:15880 Y00149.1 Mycoplasma hyopneumoniae prokMSA_id:21580 E02783.1 Mycoplasma hyopneumoniae prokMSA_id:99840 AE017332.1 Mycoplasma hyopneumoniae 232 prokMSA_id:103186 NC_006360.1 Mycoplasma hyopneumoniae 232 2.21.7.4.1.2.3928 OTU 1 seq prokMSA_id:72467 AF412986.1 Mycoplasma mustelae str. MX9(T) 2.21.7.4.1.2.3929 OTU 1 seq prokMSA_id:79153 AY191226.1 Mycoplasma gypsbengalensis str. Gb-V33 2.21.7.4.1.2.3930 OTU 1 seq prokMSA_id:15922 L24104.1 Mycoplasma gallinaceum 2.21.7.4.1.2.3934 OTU 1 seq prokMSA_id:15953 U16323.1 Mycoplasma simbae 2.21.7.4.1.2.3935 OTU 1 seq prokMSA_id:15925 AF150495.1 Mycoplasma sp. str. 94630 2.21.7.4.1.2.3936 OTU 1 seq prokMSA_id:15929 X52083.1 Mycoplasma synoviae 2.21.7.4.1.2.3946 OTU 1 seq prokMSA_id:15897 AF125591.1 Mycoplasma falconis str. H/T1(T) 2.21.7.4.1.2.3947 OTU 1 seq prokMSA_id:15865 U44768.1 Mycoplasma bovoculi 2.21.7.4.1.2.3949 OTU 1 seq prokMSA_id:60547 AY050170.1 Mycoplasma timone 2.21.7.4.1.2.3951 OTU 1 seq prokMSA_id:85218 AY246564.1 Mycoplasma sp. str. VJC358 2.21.7.4.1.2.3957 OTU 2 seqs prokMSA_id:15896 AF125587.1 Mycoplasma spumans str. PG13(T) prokMSA_id:59733 AF538684.1 Mycoplasma spumans 2.21.7.4.1.2.3967 OTU 1 seq prokMSA_id:69777 AF412971.1 Mycoplasma buteonis str. BbT2g(T) 2.21.7.4.1.2.3968 OTU 2 seqs prokMSA_id:15926 U56733.1 Mycoplasma alligatoris str. A21JP2 prokMSA_id:49382 AF412969.1 Mycoplasma alligatoris 2.21.7.4.1.2.3970 OTU 6 seqs prokMSA_id:15884 U15796.1 Mycoplasma gateae prokMSA_id:15886 U44769.1 Mycoplasma canadense prokMSA_id:15889 U44764.1 Mycoplasma alkalescens prokMSA_id:15894 U15794.1 Mycoplasma arginini prokMSA_id:15895 AF125581.1 Mycoplasma arginini str. G230(T) prokMSA_id:15902 U67944.1 Mycoplasma auris str. UIA 2.21.7.4.1.2.3971 OTU 3 seqs prokMSA_id:28253 AF412974.1 Mycoplasma collis str. 58B(T) prokMSA_id:32835 AF412976.1 Mycoplasma cricetuli str. CH(T) prokMSA_id:56134 AF538681.1 Mycoplasma collis str. 58B 2.21.7.4.1.2.3972 OTU 1 seq prokMSA_id:60702 AF527624.1 Mycoplasma sp. str. HRC689 2.21.7.4.1.2.3973 OTU 17 seqs prokMSA_id:19819 AF465628.1 Mycoplasma bovigenitalium str. 2001-035TU prokMSA_id:55778 AY121097.1 Mycoplasma bovigenitalium 988/80 prokMSA_id:62437 AY121105.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 48SR99 'ovine/caprine prokMSA_id:62438 AY121107.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 52SR99 'ovine/caprine prokMSA_id:62440 AY121106.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 52SR98 'ovine/caprine prokMSA_id:62442 AY121103.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 3SR99 'ovine/caprine prokMSA_id:62446 AY121095.1 Mycoplasma bovigenitalium 434/81 prokMSA_id:62449 AY121098.1 Mycoplasma bovigenitalium str. PG 11 prokMSA_id:70063 AY121100.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 126SR99 'ovine/caprine prokMSA_id:70186 AY121096.1 Mycoplasma bovigenitalium 57B00 prokMSA_id:71448 AY121102.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 12SR98 'ovine/caprine prokMSA_id:71679 AY121101.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 129SR99 'ovine/caprine prokMSA_id:72631 AY121109.1 Mycoplasma bovigenitalium 398/87 prokMSA_id:72958 AY121099.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 122SR99 'ovine/caprine prokMSA_id:73778 AY121104.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 48SR98 'ovine/caprine prokMSA_id:73988 AY121108.1 Mycoplasma sp. 'ovine/caprine serogroup 11' 95SR99 'ovine/caprine prokMSA_id:74382 AY121094.1 Mycoplasma sp. 'ovine/caprine serogroup 11' str. 2D 'ovine/caprine 2.21.7.4.1.2.3974 OTU 1 seq prokMSA_id:70402 AF412973.1 Mycoplasma citelli str. RG-2C(T) 2.21.7.4.1.2.3978 OTU 1 seq prokMSA_id:70343 AF221112.1 Mycoplasma columbinasale 694(T) 2.21.7.4.1.2.3979 OTU 1 seq prokMSA_id:19656 AF412979.1 Mycoplasma dispar str. 462/2(T) 2.21.7.4.1.2.3982 OTU 1 seq prokMSA_id:33342 AF412985.1 Mycoplasma molare str. H542(T) 2.21.7.4.1.2.3984 OTU 1 seq prokMSA_id:28733 AF412989.1 Mycoplasma verecundum str. GIH(T) 2.21.7.4.1.2.3991 OTU 2 seqs prokMSA_id:15900 AF125586.1 Mycoplasma buccale str. CH20247(T) prokMSA_id:39619 U83502.1 Mycoplasma buccale str. ATCC-23204 2.21.7.4.1.2.3994 OTU 1 seq prokMSA_id:15901 AF125590.1 Mycoplasma faucium str. DC333(T) 2.21.7.4.1.2.3997 OTU 1 seq prokMSA_id:15905 AF125583.1 Mycoplasma salivarium str. PG20(T) 2.21.7.4.1.2.3998 OTU 1 seq prokMSA_id:15833 L10839.1 Mycoplasma penetrans 2.21.7.4.1.2.3999 OTU 2 seqs prokMSA_id:15908 U19768.1 Mycoplasma species prokMSA_id:93639 AY366210.1 Mycoplasma testudineum str. BH29 2.21.7.4.1.2.4001 OTU 1 seq prokMSA_id:73061 AF221111.1 Mycoplasma caviae G122(T) 2.21.7.4.1.2.4014 OTU 3 seqs prokMSA_id:15910 AF125582.1 Mycoplasma pulmonis str. PG34(T) prokMSA_id:49947 NC_002771.1 Mycoplasma pulmonis UAB CTIP prokMSA_id:58394 AL445565.1 Mycoplasma pulmonis str. UAB CTIP 2.21.7.4.1.2.4015 OTU 1 seq prokMSA_id:15916 U16759.1 Mycoplasma leocaptivus 2.21.7.4.1.2.4016 OTU 1 seq prokMSA_id:15918 L08054.1 Mycoplasma corogypsi 2.21.7.4.1.2.4019 OTU 1 seq prokMSA_id:72462 AF304325.1 Mycoplasma phocidae str. 105; ATCC 33657 2.21.7.4.1.2.4021 OTU 1 seq prokMSA_id:15920 U22013.1 Mycoplasma sturni 2.21.7.4.1.2.4024 OTU 1 seq prokMSA_id:15870 U44771.1 Mycoplasma ovipneumoniae 2.21.7.4.1.2.4027 OTU 1 seq prokMSA_id:15872 U44770.1 Mycoplasma conjunctivae 2.21.7.4.1.2.4037 OTU 6 seqs prokMSA_id:15892 M96660.1 Mycoplasma hominis prokMSA_id:19704 AJ002267.1 Mycoplasma hominis str. SC4 prokMSA_id:23718 AJ002265.1 Mycoplasma hominis str. PG21 prokMSA_id:40026 AJ002268.1 Mycoplasma hominis str. P2 prokMSA_id:49564 AJ002269.1 Mycoplasma hominis str. 7488 prokMSA_id:74598 AJ002266.1 Mycoplasma hominis str. DC63 2.21.7.4.1.2.4040 OTU 2 seqs prokMSA_id:19193 AF221117.1 Mycoplasma opalescens MH5408(T) prokMSA_id:71629 AF538961.1 Mycoplasma opalescens str. MHS408 2.21.7.4.1.2.4042 OTU 2 seqs prokMSA_id:15921 AF170102.1 Mycoplasma capricolum prokMSA_id:24960 AF412975.1 Mycoplasma columborale str. MMP-4(T) 2.21.7.4.1.2.4049 OTU 6 seqs prokMSA_id:15898 U26730.1 Mycoplasma hyosynoviae prokMSA_id:18925 AF465775.1 Mycoplasma hyosynoviae str. M309/84 prokMSA_id:31624 AF465777.1 Mycoplasma hyosynoviae str. EU4a prokMSA_id:37697 AF465776.1 Mycoplasma hyosynoviae str. SF9317 prokMSA_id:40373 AF465778.1 Mycoplasma hyosynoviae str. L44 prokMSA_id:49757 AF465779.1 Mycoplasma hyosynoviae str. SAC63 2.21.7.4.1.2.4057 OTU 2 seqs prokMSA_id:15919 AF064062.1 Mycoplasma gallopavonis prokMSA_id:72545 AF412980.1 Mycoplasma gallopavonis str. WR1(T) 2.21.7.4.1.2.4061 OTU 2 seqs prokMSA_id:15887 AF125584.1 Mycoplasma anseris str. 1219(T) prokMSA_id:39995 AF125592.1 Mycoplasma cloacale str. 383(T) 2.21.7.4.1.2.4069 OTU 1 seq prokMSA_id:15891 AF125593.1 Mycoplasma indiense str. 3T(T) 2.21.7.4.1.2.4073 OTU 1 seq prokMSA_id:36302 AF221121.1 Mycoplasma elephantis E42(T) 2.21.7.4.1.2.4077 OTU 1 seq prokMSA_id:23690 AF221120.1 Mycoplasma equigenitalium T37(T) 2.21.7.4.1.2.4079 OTU 32 seqs prokMSA_id:15933 U44763.1 Mycoplasma agalactiae prokMSA_id:15934 M24290.1 Mycoplasma agalactiae prokMSA_id:15935 U02968.1 Mycoplasma bovis prokMSA_id:15937 AF092935.1 Mycoplasma bovis str. JTCL1 prokMSA_id:15940 AF010477.1 Mycoplasma agalactiae str. Izat 17/95-96 prokMSA_id:15942 U44767.1 Mycoplasma bovis prokMSA_id:17045 AF332756.1 Mycoplasma bovis str. 120/81 prokMSA_id:25799 AJ419903.1 Mycoplasma agalactiae str. 5632 prokMSA_id:31572 AJ419904.1 Mycoplasma agalactiae str. 4212 prokMSA_id:51117 AF332744.1 Mycoplasma agalactiae str. 847.121 prokMSA_id:70015 AF332751.1 Mycoplasma agalactiae str. 35 prokMSA_id:70591 AF332752.1 Mycoplasma bovis str. M148/88 prokMSA_id:70634 AF332750.1 Mycoplasma agalactiae str. 4136/96 no 2 prokMSA_id:70874 AJ419900.1 Mycoplasma agalactiae str. PG2 prokMSA_id:71393 AJ419905.1 Mycoplasma bovis str. PG45 prokMSA_id:71755 AF332746.1 Mycoplasma agalactiae str. 5725 prokMSA_id:71854 AF332749.1 Mycoplasma agalactiae str. 25/95 prokMSA_id:71989 AJ419902.1 Mycoplasma agalactiae str. 209 prokMSA_id:72350 AF332754.1 Mycoplasma bovis str. 1067 prokMSA_id:72539 AJ419901.1 Mycoplasma agalactiae str. 6968 prokMSA_id:72986 AF332755.1 Mycoplasma bovis str. L22 prokMSA_id:73088 AF332753.1 Mycoplasma bovis str. MC3386 prokMSA_id:73175 AF332757.1 Mycoplasma bovis str. 422/88 prokMSA_id:73703 AF332745.1 Mycoplasma agalactiae str. 396/12 prokMSA_id:73746 AF332748.1 Mycoplasma agalactiae str. L9 prokMSA_id:74108 AF332747.1 Mycoplasma agalactiae str. 17 prokMSA_id:74234 AF332743.1 Mycoplasma agalactiae str. M133/87 prokMSA_id:99577 AY526879.1 Mycoplasma agalactiae str. KS6 prokMSA_id:103324 AY526880.1 Mycoplasma agalactiae str. 6804 prokMSA_id:103610 AY526882.1 Mycoplasma bovis str. 613 prokMSA_id:103758 AY526883.1 Mycoplasma bovis str. 2875 prokMSA_id:107772 AY526874.1 Mycoplasma sp. str. 8790CV 2.21.7.4.1.2.4080 OTU 2 seqs prokMSA_id:15944 U16760.1 Mycoplasma leopharyngis prokMSA_id:47885 AF221116.1 Mycoplasma maculosum PG15(T) 2.21.7.4.1.2.4081 OTU 3 seqs prokMSA_id:15913 U73903.1 Mycoplasma edwardii str. PG24 prokMSA_id:70899 AF412972.1 Mycoplasma canis str. PG14(T) prokMSA_id:74000 AF340023.1 Mycoplasma canis str. PG14 2.21.7.4.1.2.4082 OTU 3 seqs prokMSA_id:15938 AF013997.1 Mycoplasma primatum str. 243 prokMSA_id:15939 AF013998.1 Mycoplasma primatum str. Navel prokMSA_id:48246 AF221118.1 Mycoplasma primatum HRC292(T) 2.21.7.4.1.2.4089 OTU 1 seq prokMSA_id:42338 AF412984.1 Mycoplasma moatsii str. MK405(T) 2.21.7.4.1.2.4090 OTU 1 seq prokMSA_id:72219 AF304324.1 Mycoplasma phocirhinis str. 852; ATCC 49639 2.21.7.4.1.2.4097 OTU 1 seq prokMSA_id:15888 AF125588.1 Mycoplasma subdolum str. TB(T) 2.21.7.4.1.2.4100 OTU 1 seq prokMSA_id:72086 AF125585.1 Mycoplasma equirhinis str. M432/72(T) 2.21.7.4.1.2.4102 OTU 1 seq prokMSA_id:67615 AF493543.1 Mycoplasma zalophus str. 4296C 2.21.7.4.1.2.4104 OTU 1 seq prokMSA_id:15899 AF001173.1 Candidatus Mycoplasma ravipulmonis 2.21.7.4.1.2.4107 OTU 1 seq prokMSA_id:71789 AF412970.1 Mycoplasma anatis str. 1340(T) 2.21.7.4.1.2.4111 OTU 2 seqs prokMSA_id:15879 M23936.1 Mycoplasma sualvi prokMSA_id:39647 AF412988.1 Mycoplasma sualvi str. Mayfield B(T) 2.21.7.4.1.2.4113 OTU 1 seq prokMSA_id:15931 U58997.1 Mycoplasma hyopharyngis 2.21.7.4.1.2.4116 OTU 3 seqs prokMSA_id:15863 M24480.1 Mycoplasma mobile prokMSA_id:103527 AE017308.1 Mycoplasma mobile str. 163K prokMSA_id:108671 NC_006908.1 Mycoplasma mobile 163K 2.21.7.4.1.2.4117 OTU 3 seqs prokMSA_id:15878 AF121890.1 Mycoplasma hyorhinis str. ATCC VR-2580 prokMSA_id:31894 AF412982.1 Mycoplasma hyorhinis str. BTS7(T) prokMSA_id:42111 AF258792.1 Mycoplasma hyorhinis str. BTS7 2.21.7.4.1.2.4119 OTU 3 seqs prokMSA_id:15936 AJ000494.1 Mycoplasma sp. Patient#88 prokMSA_id:15945 AF013996.1 Mycoplasma spermatophilum str. NC011720 prokMSA_id:19645 AF221119.1 Mycoplasma spermatophilum AH159(T) 2.21.7.4.1.2.4122 OTU 1 seq prokMSA_id:70918 AF412981.1 Mycoplasma glycophilum str. 486(T) 2.21.7.4.1.2.4123 OTU 2 seqs prokMSA_id:15923 U63137.1 Mycoplasma crocodyli str. Mohan prokMSA_id:32469 AF412977.1 Mycoplasma crocodyli str. MP145(T) 2.21.7.4.1.2.4128 OTU 1 seq prokMSA_id:15903 AF125589.1 Mycoplasma gypis str. B1/T1(T) 2.21.7.4.1.2.4130 OTU 1 seq prokMSA_id:15941 U67943.1 Mycoplasma adleri str. G145 2.21.7.4.1.2.4131 OTU 1 seq prokMSA_id:15943 U15795.1 Mycoplasma felifaucium 2.21.7.4.1.2.4133 OTU 1 seq prokMSA_id:19295 AF221115.1 Mycoplasma lipofaciens R171(T) 2.21.7.4.1.2.4134 OTU 1 seq prokMSA_id:15909 M23941.1 Mycoplasma pulmonis 2.21.7.4.1.2.4140 OTU 1 seq prokMSA_id:15947 L24106.1 Mycoplasma meleagridis 2.21.7.4.1.2.4141 OTU 1 seq prokMSA_id:71453 AF304323.1 Mycoplasma phocicerebrale str. 1049; ATCC 49640 2.21.7.4.1.2.4142 OTU 1 seq prokMSA_id:15949 L24105.1 Mycoplasma gallinarum 2.21.7.4.1.2.4148 OTU 1 seq prokMSA_id:15917 U09787.1 Mycoplasma felis 2.21.7.4.1.3 sf_2 3 seqs 2.21.7.4.1.3.3969 OTU 2 seqs prokMSA_id:15948 AF064063.1 Mycoplasma iners prokMSA_id:50081 AF221114.1 Mycoplasma iners PG30(T) 2.21.7.4.1.3.4121 OTU 1 seq prokMSA_id:71570 AF221113.1 Mycoplasma columbinum MMP-1(T) 2.21.7.4.1.4 sf_3 46 seqs 2.21.7.4.1.4.3940 OTU 6 seqs prokMSA_id:15852 L24103.1 Mycoplasma imitans prokMSA_id:15853 M22441.1 Mycoplasma gallisepticum prokMSA_id:15854 L08896.4 Mycoplasma gallisepticum prokMSA_id:15855 L08897.1 Mycoplasma gallisepticum prokMSA_id:24672 L35043.3 Mycoplasma gallisepticum str. A5969 prokMSA_id:89962 AE016969.1 Mycoplasma gallisepticum str. R 2.21.7.4.1.4.3995 OTU 1 seq prokMSA_id:15830 D78651.1 Ureaplasma felinum 2.21.7.4.1.4.3996 OTU 1 seq prokMSA_id:15831 U62937.1 Ureaplasma gallorale str. ATCC 43346 2.21.7.4.1.4.4018 OTU 1 seq prokMSA_id:15848 U44765.1 Mycoplasma sualvi 2.21.7.4.1.4.4022 OTU 1 seq prokMSA_id:15850 M23940.1 Mycoplasma pirum 2.21.7.4.1.4.4023 OTU 1 seq prokMSA_id:15851 U09788.1 Mycoplasma testudinis 2.21.7.4.1.4.4031 OTU 1 seq prokMSA_id:15827 D78650.1 Ureaplasma diversum 2.21.7.4.1.4.4032 OTU 1 seq prokMSA_id:15828 D78648.1 Ureaplasma canigenitalium 2.21.7.4.1.4.4035 OTU 1 seq prokMSA_id:15829 D78649.1 Ureaplasma cati 2.21.7.4.1.4.4058 OTU 1 seq prokMSA_id:15839 U29676.1 Mycoplasma iowae 2.21.7.4.1.4.4067 OTU 6 seqs prokMSA_id:15841 X77334.1 Mycoplasma genitalium prokMSA_id:15844 M29061.1 Mycoplasma pneumoniae prokMSA_id:15846 AF132740.1 Mycoplasma pneumoniae str. ATCC 15531 prokMSA_id:15847 AF132741.1 Mycoplasma pneumoniae str. ATCC 29342 prokMSA_id:108028 NC_000908.1 Mycoplasma genitalium G-37 prokMSA_id:108728 NC_000912.1 Mycoplasma pneumoniae M129 2.21.7.4.1.4.4093 OTU 24 seqs prokMSA_id:15806 U06098.1 Ureaplasma urealyticum prokMSA_id:15807 U06094.1 Ureaplasma urealyticum prokMSA_id:15808 AF073457.1 Ureaplasma parvum serovar 14 str. ATCC33697 serovar prokMSA_id:15809 AF073458.1 Ureaplasma parvum serovar 1 str. ATCC27813 serovar prokMSA_id:15810 U06095.1 Ureaplasma urealyticum prokMSA_id:15811 L08642.1 Ureaplasma urealyticum prokMSA_id:15812 AF073456.1 Ureaplasma parvum serovar 3 str. ATCC27815 serovar prokMSA_id:15813 AF073459.1 Ureaplasma parvum serovar 6 str. ATCC27818 serovar prokMSA_id:15814 M23935.1 Ureaplasma urealyticum prokMSA_id:15815 U06096.1 Ureaplasma urealyticum prokMSA_id:15816 U06097.1 Ureaplasma urealyticum prokMSA_id:15817 AF073446.1 Ureaplasma urealyticum serovar 2 str. ATCC27814 serovar prokMSA_id:15818 AF073447.1 Ureaplasma urealyticum serovar 4 str. ATCC27816 serovar prokMSA_id:15819 AF073448.1 Ureaplasma urealyticum serovar 5 str. ATCC27817 serovar prokMSA_id:15820 AF073449.1 Ureaplasma urealyticum serovar 7 str. ATCC27819 serovar prokMSA_id:15821 AF073450.1 Ureaplasma urealyticum serovar 8 str. ATCC27618 serovar prokMSA_id:15822 AF073451.1 Ureaplasma urealyticum serovar 9 str. ATCC33175 serovar prokMSA_id:15823 AF073452.1 Ureaplasma urealyticum serovar 10 str. ATCC33699 serovar prokMSA_id:15824 AF073453.1 Ureaplasma urealyticum serovar 11 str. ATCC33695 serovar prokMSA_id:15825 AF073454.1 Ureaplasma urealyticum serovar 12 str. ATCC33696 serovar prokMSA_id:15826 AF073455.1 Ureaplasma urealyticum serovar 13 str. ATCC33698 serovar prokMSA_id:40947 AE002112.1 Ureaplasma parvum serovar 3 str. ATCC 700970 serovar prokMSA_id:48336 NC_002162.1 Ureaplasma parvum serovar 3 str. ATCC 700970 prokMSA_id:50881 AE002127.1 Ureaplasma parvum serovar 3 str. ATCC 700970 serovar 2.21.7.4.1.4.4095 OTU 1 seq prokMSA_id:15954 M24582.1 Mycoplasma californicum 2.21.7.4.1.5 sf_4 1 seq 2.21.7.4.1.5.4135 OTU 1 seq prokMSA_id:15837 AF125878.1 Mycoplasma fastidiosum str. 4822(T) 2.21.7.4.1.6 sf_5 7 seqs 2.21.7.4.1.6.3931 OTU 1 seq prokMSA_id:49164 AF338268.1 Mycoplasma ovis 2.21.7.4.1.6.4114 OTU 6 seqs prokMSA_id:15856 U88564.1 Candidatus Mycoplasma haemominutum strain isolate str. California haemominutum prokMSA_id:50753 AF271154.1 Candidatus Mycoplasma haemominutum Birmingham prokMSA_id:58423 AY150980.1 Candidatus Mycoplasma haemominutum UK no. 1 haemominutum prokMSA_id:58424 AY150979.1 Candidatus Mycoplasma haemominutum South African no. 1 haemominutum prokMSA_id:70410 AY150978.1 Candidatus Mycoplasma haemominutum Australian no. 3 prokMSA_id:73873 AY150981.1 Candidatus Mycoplasma haemominutum UK no. 2 haemominutum 2.21.7.4.1.7 sf_6 14 seqs 2.21.7.4.1.7.4020 OTU 14 seqs prokMSA_id:15861 U95297.1 Mycoplasma haemofelis prokMSA_id:23047 AF178677.1 Mycoplasma haemofelis Oklahoma prokMSA_id:31040 AF197337.1 Mycoplasma haemocanis prokMSA_id:50405 AF407208.1 Mycoplasma haemocanis prokMSA_id:56527 AF548631.1 Mycoplasma haemofelis 2 prokMSA_id:58418 AY150985.1 Mycoplasma haemofelis UK no. 6 prokMSA_id:58421 AY150984.1 Mycoplasma haemofelis UK no. 5 prokMSA_id:58425 AY150977.1 Mycoplasma haemofelis Australian no. 2 prokMSA_id:58426 AY150976.1 Mycoplasma haemofelis Australian no. 1 prokMSA_id:58429 AY150972.1 Mycoplasma haemofelis French no. 1 prokMSA_id:71517 AY150973.1 Mycoplasma haemocanis Germany Munich no. 1 prokMSA_id:74226 AY069948.1 Mycoplasma haemofelis prokMSA_id:102383 AY529641.1 Mycoplasma haemocanis prokMSA_id:106362 AY529632.1 Mycoplasma haemofelis 2.21.7.4.1.8 sf_7 60 seqs 2.21.7.4.1.8.3953 OTU 57 seqs prokMSA_id:15740 X00921.1 Mycoplasma capricolum prokMSA_id:15741 U26036.1 Mycoplasma mycoides prokMSA_id:15743 U26050.1 Mycoplasma mycoides prokMSA_id:15744 U26046.1 Mycoplasma capricolum prokMSA_id:15746 U26052.1 Mycoplasma capricolum prokMSA_id:15747 AF009838.1 Mycoplasma capricolum subsp. capripneumoniae str. 7/1a subsp. prokMSA_id:15748 AF009839.1 Mycoplasma capricolum subsp. capripneumoniae str. 8789 subsp. prokMSA_id:15749 AF009840.1 Mycoplasma capricolum subsp. capripneumoniae str. 9081 subsp. prokMSA_id:15750 AF009841.1 Mycoplasma capricolum subsp. capripneumoniae str. 91106/550/1 subsp. prokMSA_id:15751 AF009842.1 Mycoplasma capricolum subsp. capripneumoniae str. 9231 subsp. prokMSA_id:15752 AF009843.1 Mycoplasma capricolum subsp. capripneumoniae str. 95043 subsp. prokMSA_id:15753 AF009844.1 Mycoplasma capricolum subsp. capripneumoniae str. GL102 subsp. prokMSA_id:15754 AF009845.1 Mycoplasma capricolum subsp. capripneumoniae str. M79/93 subsp. prokMSA_id:15755 U26037.1 Mycoplasma mycoides prokMSA_id:15757 U26053.1 "Mycoplasma PG50" prokMSA_id:15758 U26045.1 Mycoplasma capricolum prokMSA_id:15759 AF085350.1 Mycoplasma LC subsp. mycoides str. 8756-13 subsp. prokMSA_id:15760 U26039.1 Mycoplasma mycoides prokMSA_id:15761 M10588.1 Mycoplasma species prokMSA_id:15762 U26047.1 Mycoplasma capricolum prokMSA_id:15763 M94728.1 Mycoplasma species prokMSA_id:15764 M23943.1 Mycoplasma mycoides prokMSA_id:15765 U26041.1 Mycoplasma capricolum prokMSA_id:15766 U26040.1 Mycoplasma capricolum prokMSA_id:15767 U26043.1 Mycoplasma mycoides prokMSA_id:15768 U26051.1 Mycoplasma capricolum prokMSA_id:15769 U26054.1 "Mycoplasma PG50" prokMSA_id:15770 U26044.1 Mycoplasma mycoides prokMSA_id:15771 U26038.1 Mycoplasma mycoides prokMSA_id:15772 U26049.1 Mycoplasma mycoides prokMSA_id:15773 U26042.1 Mycoplasma capricolum prokMSA_id:15774 AF009830.1 Mycoplasma capricolum subsp. capripneumoniae str. 7/1a subsp. prokMSA_id:15775 AF009831.1 Mycoplasma capricolum subsp. capripneumoniae str. 8789 subsp. prokMSA_id:15776 AF009832.1 Mycoplasma capricolum subsp. capripneumoniae str. 9081 subsp. prokMSA_id:15777 AF009833.1 Mycoplasma capricolum subsp. capripneumoniae str. 91106/C550/1 subsp. prokMSA_id:15778 AF009834.1 Mycoplasma capricolum subsp. capripneumoniae str. 9231 subsp. prokMSA_id:15779 AF009835.1 Mycoplasma capricolum subsp. capripneumoniae str. 95043 subsp. prokMSA_id:15780 AF009836.1 Mycoplasma capricolum subsp. capripneumoniae str. GL102 subsp. prokMSA_id:15781 AF009837.1 Mycoplasma capricolum subsp. capripneumoniae str. M79/93 subsp. prokMSA_id:15782 U26048.1 Mycoplasma capricolum prokMSA_id:20656 AF202925.1 Mycoplasma capricolum subsp. capripneumoniae str. 970095 subsp. prokMSA_id:22976 AF232909.1 Mycoplasma capricolum subsp. capripneumoniae str. M89/98 subsp. prokMSA_id:27213 AF202923.1 Mycoplasma capricolum subsp. capripneumoniae str. 970097 subsp. prokMSA_id:30974 AF202927.1 Mycoplasma capricolum subsp. capripneumoniae str. Yatta B subsp. prokMSA_id:31582 AF202928.2 Mycoplasma capricolum subsp. capripneumoniae str. Yatta B subsp. prokMSA_id:34810 AF202926.1 Mycoplasma capricolum subsp. capripneumoniae str. 970095 subsp. prokMSA_id:35482 AF232908.1 Mycoplasma capricolum subsp. capripneumoniae str. M89/98 subsp. prokMSA_id:47300 AF202924.1 Mycoplasma capricolum subsp. capripneumoniae str. 970097 subsp. prokMSA_id:70102 AF261729.1 Mycoplasma sp. 'bovine group 7' 47 prokMSA_id:70694 AF261724.1 Mycoplasma sp. 'bovine group 7' 57 prokMSA_id:71050 AF261725.1 Mycoplasma sp. 'bovine group 7' 4 prokMSA_id:71421 AF261726.1 Mycoplasma sp. 'bovine group 7' 33 prokMSA_id:71703 AF261727.1 Mycoplasma sp. 'bovine group 7' 36 prokMSA_id:72686 AF261730.1 Mycoplasma sp. 'bovine group 7' 48 prokMSA_id:98949 BX842642.1 Mycoplasma subsp. mycoides SC str. PG1 prokMSA_id:99100 BX842643.1 Mycoplasma subsp. mycoides SC str. PG1 prokMSA_id:108132 NC_005364.1 Mycoplasma mycoides subsp. mycoides SC str. PG1 2.21.7.4.1.8.4062 OTU 3 seqs prokMSA_id:15784 U67945.1 Mycoplasma cottewii str. VIS prokMSA_id:15785 U67946.1 Mycoplasma yeatsii str. GIH prokMSA_id:15786 U26055.1 Mycoplasma putrefaciens 2.21.7.4.1.9 sf_8 1 seq 2.21.7.4.1.9.4009 OTU 1 seq prokMSA_id:15696 U16758.1 Mycoplasma feliminutum 2.21.7.4.2 Unclassified 4 seqs 2.21.7.4.2.1 sf_1 1 seq 2.21.7.4.2.1.4144 OTU 1 seq prokMSA_id:32823 AB062770.1 termite gut clone BCf1-07 2.21.7.4.2.2 sf_2 2 seqs 2.21.7.4.2.2.3954 OTU 1 seq prokMSA_id:43971 AB062824.1 termite gut homogenate clone BCf4-19 2.21.7.4.2.2.3964 OTU 1 seq prokMSA_id:78268 AB089056.1 termite gut homogenate clone Rs-B53 sp. 2.21.7.4.2.3 sf_3 1 seq 2.21.7.4.2.3.4094 OTU 1 seq prokMSA_id:15737 Z94006.1 clone T21 2.21.7.5 Unclassified 17 seqs 2.21.7.5.1 Unclassified 17 seqs 2.21.7.5.1.1 sf_1 6 seqs 2.21.7.5.1.1.3962 OTU 1 seq prokMSA_id:50779 AF371527.1 phylotype OTU-342 swine intestine clone p-3870-23G5 2.21.7.5.1.1.3985 OTU 1 seq prokMSA_id:15700 AF001770.1 rumen clone RF39 2.21.7.5.1.1.4000 OTU 1 seq prokMSA_id:29625 AF132232.1 adult human fecal matter clone adhufec202 2.21.7.5.1.1.4025 OTU 1 seq prokMSA_id:40949 AF371525.1 phylotype OTU-283 swine intestine clone p-2601-9F5 2.21.7.5.1.1.4106 OTU 1 seq prokMSA_id:52403 AF371526.1 phylotype OTU-275 swine intestine clone p-3053-SwA5 2.21.7.5.1.1.4126 OTU 1 seq prokMSA_id:21634 AF371528.1 phylotype OTU-276 swine intestine clone p-3025-SwA5 2.21.7.5.1.2 sf_2 3 seqs 2.21.7.5.1.2.3987 OTU 1 seq prokMSA_id:15710 U81729.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinHA31 2.21.7.5.1.2.3988 OTU 1 seq prokMSA_id:15713 AB009179.1 rumen clone RFN20 bacterium 2.21.7.5.1.2.3992 OTU 1 seq prokMSA_id:15714 AB009222.1 rumen clone RFN74 bacterium 2.21.7.5.1.3 sf_4 1 seq 2.21.7.5.1.3.4136 OTU 1 seq prokMSA_id:15838 AJ132469.1 Mycoplasma sp 2.21.7.5.1.4 sf_6 7 seqs 2.21.7.5.1.4.149 OTU 1 seq prokMSA_id:15724 M23730.1 Streptococcus pleomorphus 2.21.7.5.1.4.196 OTU 1 seq prokMSA_id:15736 M59230.1 Eubacterium biforme 2.21.7.5.1.4.3958 OTU 1 seq prokMSA_id:27366 AJ408190.1 equine large intestine clone MW03 2.21.7.5.1.4.4017 OTU 1 seq prokMSA_id:24669 AJ251229.1 Sugarcane phytoplasma type C 2.21.7.5.1.4.4029 OTU 1 seq prokMSA_id:32694 AF429360.1 chicken intestinal s clone CCAJG71 2.21.7.5.1.4.4039 OTU 1 seq prokMSA_id:15643 L27039.1 Potato witches'-broom phytoplasma 2.21.7.5.1.4.4103 OTU 1 seq prokMSA_id:50433 AF371512.1 phylotype OTU-186 swine intestine clone p-392-o3 2.21.8 Sulfobacillus 17 seqs 2.21.8.1 Unclassified 17 seqs 2.21.8.1.1 Unclassified 17 seqs 2.21.8.1.1.1 sf_1 17 seqs 2.21.8.1.1.1.3271 OTU 2 seqs prokMSA_id:14341 X91080.1 Sulfobacillus thermosulfidooxidans prokMSA_id:94490 AB089844.1 Sulfobacillus thermosulfidooxidans str. DSM 9293 2.21.8.1.1.1.3276 OTU 1 seq prokMSA_id:58313 AF543505.1 acid mine drainage clone BA8 2.21.8.1.1.1.3400 OTU 1 seq prokMSA_id:26544 AY007663.1 Sulfobacillus montserratensis 2.21.8.1.1.1.3461 OTU 1 seq prokMSA_id:25382 AF213055.1 Sulfobacillus sp. Fras1 2.21.8.1.1.1.3657 OTU 5 seqs prokMSA_id:33263 AY007665.1 Sulfobacillus yellowstonensis prokMSA_id:58331 AY140234.1 Sulfobacillus sp. str. GG6/1 prokMSA_id:64391 AY121610.1 Sulfobacillus sp. str. NC prokMSA_id:66335 AF507964.1 Sulfobacillus sp. str. YTF3 prokMSA_id:95123 AB089842.1 Sulfobacillus acidophilus str. DSM 10332 2.21.8.1.1.1.3806 OTU 1 seq prokMSA_id:73543 AY007664.1 Sulfobacillus ambivalens 2.21.8.1.1.1.3832 OTU 1 seq prokMSA_id:41279 AF460985.1 Sulfobacillus sp. clone P3-5 2.21.8.1.1.1.3838 OTU 1 seq prokMSA_id:48425 AF391986.1 thermal soil clone YNPFFA5 2.21.8.1.1.1.3852 OTU 1 seq prokMSA_id:14342 U75648.1 Sulfobacillus thermosulfidooxidans 2.21.8.1.1.1.3897 OTU 3 seqs prokMSA_id:14351 X72853.1 acid mine drainage clone A70 prokMSA_id:21716 AF226671.1 acid mine drainage clone BU138 prokMSA_id:38687 AF460984.1 Sulfobacillus sp. clone K55 2.21.9 Symbiobacteria 22 seqs 2.21.9.1 Symbiobacterales 21 seqs 2.21.9.1.1 Unclassified 21 seqs 2.21.9.1.1.1 sf_1 2 seqs 2.21.9.1.1.1.2388 OTU 1 seq prokMSA_id:25424 AF465653.1 G+C Gram-positive clone YNPRH70A 2.21.9.1.1.1.77 OTU 1 seq prokMSA_id:27433 AF391988.1 thermal soil clone YNPFFP9 2.21.9.1.1.2 sf_2 1 seq 2.21.9.1.1.2.2427 OTU 1 seq prokMSA_id:13712 AF027087.1 hot spring clone OPB54 2.21.9.1.1.3 sf_3 18 seqs 2.21.9.1.1.3.3508 OTU 1 seq prokMSA_id:44578 AF190460.1 Symbiobacterium toebii 2.21.9.1.1.3.61 OTU 17 seqs prokMSA_id:28304 AB052369.1 Symbiobacterium sp. YK88 prokMSA_id:29246 AB052380.1 Symbiobacterium sp. MN128 prokMSA_id:29828 AB052371.1 Symbiobacterium sp. MO16 prokMSA_id:31811 AB052368.1 Symbiobacterium sp. MO87 prokMSA_id:32767 AB052379.1 Symbiobacterium sp. MO32 prokMSA_id:33425 AB052378.1 Symbiobacterium sp. HN15 prokMSA_id:35473 AB052381.1 Symbiobacterium sp. MO31 prokMSA_id:38028 AB052388.1 Symbiobacterium sp. MN5 prokMSA_id:42424 AB052385.1 Symbiobacterium sp. MN117 prokMSA_id:42519 AB052373.1 Symbiobacterium sp. MO33 prokMSA_id:46046 AB052375.1 Symbiobacterium sp. MO22 prokMSA_id:47548 AB052374.1 Symbiobacterium sp. MO17 prokMSA_id:48078 AB052370.1 Symbiobacterium sp. YK63 prokMSA_id:48690 AB052377.1 Symbiobacterium sp. YK66 prokMSA_id:51749 AB052372.1 Symbiobacterium sp. YK1 prokMSA_id:54890 AB004913.1 Symbiobacterium thermophilum prokMSA_id:105232 AP006840.1 Symbiobacterium thermophilum IAM 14863 str. IAM14863 2.21.9.2 Unclassified 1 seq 2.21.9.2.1 Unclassified 1 seq 2.21.9.2.1.1 sf_1 1 seq 2.21.9.2.1.1.2407 OTU 1 seq prokMSA_id:27974 AF391985.1 thermal soil clone YNPFFP2 2.22 Fusobacteria 89 seqs 2.22.1 Fusobacteria 89 seqs 2.22.1.1 Fusobacterales 87 seqs 2.22.1.1.1 Fusobacteriaceae 87 seqs 2.22.1.1.1.1 sf_13 2 seqs 2.22.1.1.1.1.1081 OTU 2 seqs prokMSA_id:11297 AF189244.1 Leptotrichia sp. prokMSA_id:49525 AF287811.1 human subgingival plaque clone DA069 2.22.1.1.1.2 sf_1 44 seqs 2.22.1.1.1.2.488 OTU 44 seqs prokMSA_id:11306 X55407.1 Fusobacterium simiae prokMSA_id:11308 X55404.1 Fusobacterium nucleatum prokMSA_id:11314 M58685.1 Fusobacterium simiae prokMSA_id:11315 X55405.1 Fusobacterium periodonticum prokMSA_id:11316 AJ006964.1 Fusobacterium nucleatum prokMSA_id:11317 AJ006965.1 Fusobacterium naviforme prokMSA_id:11318 X55403.1 Fusobacterium nucleatum prokMSA_id:11320 X55401.1 Fusobacterium nucleatum prokMSA_id:11324 X55402.1 Fusobacterium nucleatum prokMSA_id:11330 X55406.1 Fusobacterium alocis prokMSA_id:20351 AF287810.1 human subgingival plaque clone CZ006 prokMSA_id:28718 AF201977.1 direct prokMSA_id:30752 AF287805.1 human subgingival plaque clone AJ050 prokMSA_id:34568 AJ133496.1 Fusobacterium nucleatum subsp. nucleatum prokMSA_id:39148 AF469404.1 clone 33-FL60B98 prokMSA_id:40432 AF287815.1 human subgingival plaque clone I035 prokMSA_id:41933 AF385575.1 purified crevicular epithelial cells clone EU021 oral prokMSA_id:46013 AF366265.1 derived supragingival plaque on tooth surfaces clone BS019 sp. prokMSA_id:52269 AF287809.1 human subgingival plaque clone CY024 prokMSA_id:58280 AF543300.1 Fusobacterium nucleatum str. ChDC OS50 prokMSA_id:59567 AY134900.1 Fusobacterium sp. oral clone EX162 prokMSA_id:59571 AY134897.1 Fusobacterium sp. oral clone EX123 prokMSA_id:64396 NC_003454.1 Fusobacterium subsp. nucleatum str. ATCC 25586 subsp. prokMSA_id:68347 AF481217.1 Fusobacterium nucleatum str. E9_12 prokMSA_id:70705 AJ289181.1 corneal ulcer clone E1-K5 prokMSA_id:72547 AF432130.1 tongue dorsum scrapings clone BS011 prokMSA_id:72688 AJ289177.1 corneal ulcer clone E1-K4 prokMSA_id:72772 AF287812.1 Fusobacterium nucleatum subsp. polymorphum prokMSA_id:73310 AF287806.1 human subgingival plaque clone R002 prokMSA_id:77649 AY162222.1 Fusobacterium nucleatum subsp. canifelium str. RMA 11693 Q24 subsp. prokMSA_id:77942 AY162221.1 Fusobacterium nucleatum subsp. canifelium str. RMA 1036 Q20 subsp. prokMSA_id:78038 AY162219.1 Fusobacterium nucleatum subsp. canifelium str. RMA 12701 Q4 subsp. prokMSA_id:78238 AY162220.1 Fusobacterium nucleatum subsp. canifelium str. RMA 12708 Q11 subsp. prokMSA_id:87941 AY278617.1 Fusobacterium genomosp. C2 prokMSA_id:88459 AY325760.1 human cerebrospinal fluid clone prokMSA_id:103712 NZ_AABF02000001.1 Fusobacterium nucleatum subsp. vincentii str. ATCC 49256 prokMSA_id:104952 AABF01000001.1 Fusobacterium nucleatum subsp. vincentii str. ATCC 49256 prokMSA_id:105251 AJ810271.1 Fusobacterium periodonticum str. KP-F10 prokMSA_id:105626 NZ_AABF02000026.1 Fusobacterium nucleatum subsp. vincentii str. ATCC 49256 prokMSA_id:105860 AJ810275.1 Fusobacterium nucleatum str. JC-208 prokMSA_id:106163 AJ810277.1 Fusobacterium nucleatum str. OMZ 274 prokMSA_id:106907 AABF01000026.1 Fusobacterium nucleatum subsp. vincentii str. ATCC 49256 prokMSA_id:106993 AABF01000111.1 Fusobacterium nucleatum subsp. vincentii str. ATCC 49256 prokMSA_id:111436 NZ_AABF02000111.1 Fusobacterium nucleatum subsp. vincentii ATCC 49256 2.22.1.1.1.3 sf_3 41 seqs 2.22.1.1.1.3.1034 OTU 1 seq prokMSA_id:41139 AJ307982.1 Ilyobacter tartaricus 2.22.1.1.1.3.1057 OTU 3 seqs prokMSA_id:71467 AY029801.1 Leptotrichia trevisanii str. LB11 prokMSA_id:71541 AF206305.1 Leptotrichia trevisanii prokMSA_id:71923 AY029805.1 Leptotrichia trevisanii str. LB06 2.22.1.1.1.3.116 OTU 1 seq prokMSA_id:38061 AF287814.1 human subgingival plaque clone F138 2.22.1.1.1.3.120 OTU 1 seq prokMSA_id:31235 AF432138.1 tongue dorsum scrapings clone FP036 2.22.1.1.1.3.231 OTU 2 seqs prokMSA_id:11292 Z35304.1 Streptobacillus moniliformis prokMSA_id:11293 Z35305.1 Streptobacillus moniliformis 2.22.1.1.1.3.285 OTU 2 seqs prokMSA_id:32203 AY008309.1 Leptotrichia sp. oral clone BU064 prokMSA_id:70628 AF366276.1 supragingival plaque on tooth surfaces clone DT031 2.22.1.1.1.3.342 OTU 2 seqs prokMSA_id:73096 AF366268.1 derived supragingival plaque on tooth surfaces clone DE081 sp. prokMSA_id:74059 AY029806.1 Leptotrichia shahii str. LB37 2.22.1.1.1.3.348 OTU 1 seq prokMSA_id:52873 AJ307980.1 Ilyobacter insuetus 2.22.1.1.1.3.35 OTU 1 seq prokMSA_id:70038 AF385571.1 purified crevicular epithelial cells clone EI013 oral 2.22.1.1.1.3.364 OTU 1 seq prokMSA_id:11301 X54275.1 Propionigenium modestum 2.22.1.1.1.3.367 OTU 1 seq prokMSA_id:29566 AY078425.1 Leptotrichia amnionii str. AMN-1 2.22.1.1.1.3.368 OTU 1 seq prokMSA_id:11291 M58678.1 Sebaldella termitidis 2.22.1.1.1.3.387 OTU 3 seqs prokMSA_id:51437 AF287816.1 Leptotrichia sp. oral isolate str. A39FD prokMSA_id:70804 AY029802.1 Leptotrichia wadeii str. LB16 prokMSA_id:74297 AY029804.1 Leptotrichia sp. str. LB32 2.22.1.1.1.3.426 OTU 2 seqs prokMSA_id:57456 AJ441229.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 63 bacterium prokMSA_id:76867 AF550592.1 Fusobacteria Ko711 2.22.1.1.1.3.451 OTU 1 seq prokMSA_id:11319 X77850.1 Clostridium rectum 2.22.1.1.1.3.455 OTU 1 seq prokMSA_id:73887 AF385572.1 purified crevicular epithelial cells clone EI022 oral 2.22.1.1.1.3.558 OTU 2 seqs prokMSA_id:11298 L37789.1 "Leptotrichia sanguinegens" prokMSA_id:58542 AJ344093.1 Sneathia sanguinegens str. CCUG 41628T 2.22.1.1.1.3.590 OTU 1 seq prokMSA_id:16867 AF195450.1 September collection clone kps68f 2.22.1.1.1.3.644 OTU 1 seq prokMSA_id:31785 AJ307981.1 Ilyobacter polytropus 2.22.1.1.1.3.690 OTU 1 seq prokMSA_id:71850 AY029807.1 Leptotrichia goodfellowii str. LB57 2.22.1.1.1.3.694 OTU 1 seq prokMSA_id:74391 AF385518.1 healthy and subjects with halitosis clone DR011 oral 2.22.1.1.1.3.716 OTU 3 seqs prokMSA_id:11300 X84049.1 Propionigenium maris prokMSA_id:34513 Y16800.1 Propionigenium maris prokMSA_id:42042 Y16799.1 Propionigenium maris 2.22.1.1.1.3.721 OTU 1 seq prokMSA_id:83573 AY207053.1 human mouth clone P2PB_51 2.22.1.1.1.3.739 OTU 4 seqs prokMSA_id:11305 X74407.1 Fusobacterium necrophorum prokMSA_id:11309 X74408.1 Fusobacterium necrophorum prokMSA_id:11310 AF044948.1 Fusobacterium necrophorum prokMSA_id:34266 AJ295750.1 Fusobacterium equinum str. horse VPB 4027 2.22.1.1.1.3.779 OTU 3 seqs prokMSA_id:37488 AF287813.1 Leptotrichia sp. oral strain str. FAC5 prokMSA_id:70629 AY029803.1 Leptotrichia hofstadii str. LB23 prokMSA_id:71688 AF201978.1 human oral clone AC60 2.22.1.2 Fusobacteriales 2 seqs 2.22.1.2.1 Unclassified 2 seqs 2.22.1.2.1.1 sf_1 1 seq 2.22.1.2.1.1.389 OTU 1 seq prokMSA_id:11299 X83517.1 Streptobacillus-like sp. AVG 2115 2.22.1.2.1.2 sf_4 1 seq 2.22.1.2.1.2.378 OTU 1 seq prokMSA_id:11302 X78419.1 Cetobacterium ceti 2.23 Gemmatimonadetes 25 seqs 2.23.1 Unclassified 25 seqs 2.23.1.1 Unclassified 25 seqs 2.23.1.1.1 Unclassified 25 seqs 2.23.1.1.1.1 sf_5 21 seqs 2.23.1.1.1.1.10112 OTU 2 seqs prokMSA_id:55923 AF432607.1 forest soil clone NOS7.157WL prokMSA_id:82212 AY218695.1 penguin droppings sediments clone KD8-84 2.23.1.1.1.1.1127 OTU 1 seq prokMSA_id:75312 AJ519396.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-21 2.23.1.1.1.1.1149 OTU 1 seq prokMSA_id:77189 AF432618.1 lodgepole pine rhizosphere soil clone C17.11WL 2.23.1.1.1.1.1238 OTU 2 seqs prokMSA_id:42760 AF255632.1 sludge clone Ebpr21 prokMSA_id:44017 AB072735.1 Gemmatimonas aurantiaca 2.23.1.1.1.1.1565 OTU 2 seqs prokMSA_id:75241 AJ519401.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-115 prokMSA_id:76800 AJ532728.1 uranium mining waste pile clone JG34-KF-418 2.23.1.1.1.1.2047 OTU 1 seq prokMSA_id:44411 AF234148.1 soil clone #0319-7G21 2.23.1.1.1.1.227 OTU 1 seq prokMSA_id:75259 AJ519397.1 uranium mining waste pile clone JG37-AG-36 2.23.1.1.1.1.2340 OTU 4 seqs prokMSA_id:81111 AY218623.1 penguin droppings sediments clone KD4-106 prokMSA_id:81348 AY218764.1 penguin droppings sediments clone KD6-66 prokMSA_id:81374 AY218732.1 penguin droppings sediments clone KD5-16 prokMSA_id:81713 AY218711.1 penguin droppings sediments clone KD7-47 2.23.1.1.1.1.2374 OTU 1 seq prokMSA_id:79951 AY192277.1 Rocky Mountain alpine soil clone W2a-1F 2.23.1.1.1.1.2462 OTU 1 seq prokMSA_id:13722 AF013536.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.23.1.1.1.1.317 OTU 1 seq prokMSA_id:81623 AY218696.1 penguin droppings sediments clone KD8-87 2.23.1.1.1.1.442 OTU 1 seq prokMSA_id:73339 AF507712.1 forest soil clone S0134 2.23.1.1.1.1.9179 OTU 1 seq prokMSA_id:75464 AF432617.1 lodgepole pine rhizosphere soil British Columbia Ministry Forests Long-Term Soil Productivity 2.23.1.1.1.1.9464 OTU 2 seqs prokMSA_id:72899 AF545649.1 shortgrass steppe soil (Stunner series fine loamy over sandy Ustic Calciargid) under Bouteloua prokMSA_id:104785 AF432648.1 lodgepole pine rhizosphere soil British Columbia Ministry Forests Long-Term Soil Productivity 2.23.1.1.1.2 sf_6 4 seqs 2.23.1.1.1.2.1734 OTU 1 seq prokMSA_id:11593 AF186415.1 sponge symbiont clone PAUC43f 2.23.1.1.1.2.2464 OTU 1 seq prokMSA_id:13726 AB015578.1 deep-sea sediment clone BD7-2 2.23.1.1.1.2.2554 OTU 1 seq prokMSA_id:60181 AJ347028.1 sponge symbiont clone TK19 2.23.1.1.1.2.957 OTU 1 seq prokMSA_id:11278 AB015540.1 deep-sea sediment clone BD2-11 2.24 LD1PA group 1 seq 2.24.1 Unclassified 1 seq 2.24.1.1 Unclassified 1 seq 2.24.1.1.1 Unclassified 1 seq 2.24.1.1.1.1 sf_1 1 seq 2.24.1.1.1.1.10118 OTU 1 seq prokMSA_id:63781 AY114324.1 anoxic marine sediment clone LD1-PA38 2.25 Lentisphaerae 9 seqs 2.25.1 Unclassified 9 seqs 2.25.1.1 Unclassified 9 seqs 2.25.1.1.1 Unclassified 9 seqs 2.25.1.1.1.1 sf_5 9 seqs 2.25.1.1.1.1.10027 OTU 1 seq prokMSA_id:79161 AJ431234.1 vent worm enrichment clone Dex80-43 2.25.1.1.1.1.10330 OTU 1 seq prokMSA_id:62663 AF507900.1 Mono lake clone ML635J-58 2.25.1.1.1.1.187 OTU 2 seqs prokMSA_id:1542 U81755.2 anaerobic digestor clone vadinHB65 prokMSA_id:31745 AF275917.1 anaerobic digestor clone AA08 2.25.1.1.1.1.273 OTU 1 seq prokMSA_id:1809 AB009195.1 rumen clone RFN4 2.25.1.1.1.1.3384 OTU 1 seq prokMSA_id:14576 AB009200.1 rumen clone RFN44 2.25.1.1.1.1.521 OTU 1 seq prokMSA_id:1541 U81707.2 anaerobic digestor clone vadinBE97 2.25.1.1.1.1.9704 OTU 1 seq prokMSA_id:79502 AJ431235.1 vent worm enrichment clone Dex80-64 2.25.1.1.1.1.9795 OTU 1 seq prokMSA_id:10689 AB015533.1 deep-sea sediment clone BD2-3 2.26 marine group A 13 seqs 2.26.1 mgA-1 12 seqs 2.26.1.1 Unclassified 12 seqs 2.26.1.1.1 Unclassified 12 seqs 2.26.1.1.1.1 sf_1 12 seqs 2.26.1.1.1.1.6352 OTU 1 seq prokMSA_id:35861 AF355047.1 marine clone Arctic96B-7 2.26.1.1.1.1.6383 OTU 2 seqs prokMSA_id:3653 U86494.1 Sampling site subtropical Atlantic near Bermuda; 32 17.38 N 64 deg. 33.65 min. W 1000 m depth clone pB1-121 prokMSA_id:101443 AY458631.1 marine waters clone EBAC750-03B02 2.26.1.1.1.1.6408 OTU 3 seqs prokMSA_id:64895 AY095885.1 prokMSA_id:79575 AF382116.1 bacterioplankton clone ZA3312c prokMSA_id:101444 AACY01094130.1 Sargasso Sea 2.26.1.1.1.1.6454 OTU 6 seqs prokMSA_id:3654 U34043.1 marine clone SAR406 prokMSA_id:3656 AF001653.1 marine clone OCS146 prokMSA_id:3657 U41450.1 marine clone OCS307 prokMSA_id:29916 U64575.1 marine plankton clone NH16-12 prokMSA_id:60631 AF406544.1 bacterioplankton clone AEGEAN_225 prokMSA_id:68979 AY033318.1 marine bacterioplankton clone MB13C05 2.26.2 mgA-2 1 seq 2.26.2.1 Unclassified 1 seq 2.26.2.1.1 Unclassified 1 seq 2.26.2.1.1.1 sf_1 1 seq 2.26.2.1.1.1.6344 OTU 1 seq prokMSA_id:79412 AF382142.1 bacterioplankton clone ZA3648c 2.27 Natronoanaerobium 9 seqs 2.27.1 Unclassified 9 seqs 2.27.1.1 Unclassified 9 seqs 2.27.1.1.1 Unclassified 9 seqs 2.27.1.1.1.1 sf_1 9 seqs 2.27.1.1.1.1.2429 OTU 1 seq prokMSA_id:73970 AJ271451.1 Natronoanaerobium halophilum G-M14CH-4 2.27.1.1.1.1.2437 OTU 1 seq prokMSA_id:62682 AF507879.2 Mono Lake at depth 23m station 6 July 2000 clone ML623J-19 2.27.1.1.1.1.2451 OTU 2 seqs prokMSA_id:23520 AJ271450.1 Natronoanaerobium salstagnum O-M12SP-2 prokMSA_id:72206 AJ271452.1 Natronoanaerobium aggerbacterium G-M16NWC-4 2.27.1.1.1.1.3570 OTU 2 seqs prokMSA_id:62679 AF507883.1 Mono Lake at depth 35m station 6 July 2000 clone ML635J-5 prokMSA_id:63836 AF454298.1 Bacillus sp. clone ML1228J-1 2.27.1.1.1.1.3745 OTU 1 seq prokMSA_id:62685 AF507877.1 Mono Lake at depth 35m station 6 July 2000 clone ML635J-45 2.27.1.1.1.1.4377 OTU 1 seq prokMSA_id:55772 AF507888.1 Mono Lake at depth 35m station 6 July 2000 clone ML635J-65 G+C 2.27.1.1.1.1.769 OTU 1 seq prokMSA_id:70140 AJ431345.1 fjord ikaite column clone un-c23 2.28 NC10 4 seqs 2.28.1 NC10-1 2 seqs 2.28.1.1 Unclassified 2 seqs 2.28.1.1.1 Unclassified 2 seqs 2.28.1.1.1.1 sf_1 2 seqs 2.28.1.1.1.1.452 OTU 1 seq prokMSA_id:79044 AY177763.1 vadose clone 5G01 2.28.1.1.1.1.536 OTU 1 seq prokMSA_id:76461 AJ519669.1 uranium mill tailings clone GuBH2-AD-8 2.28.2 NC10-2 1 seq 2.28.2.1 Unclassified 1 seq 2.28.2.1.1 Unclassified 1 seq 2.28.2.1.1.1 sf_1 1 seq 2.28.2.1.1.1.10254 OTU 1 seq prokMSA_id:75874 AJ519650.1 uranium mill tailings soil sample clone Sh765B-TzT-35 2.28.3 Unclassified 1 seq 2.28.3.1 Unclassified 1 seq 2.28.3.1.1 Unclassified 1 seq 2.28.3.1.1.1 sf_1 1 seq 2.28.3.1.1.1.2516 OTU 1 seq prokMSA_id:62410 AF529103.1 TCE-contaminated site clone FTL22 2.29 Nitrospira 99 seqs 2.29.1 Nitrospira 99 seqs 2.29.1.1 Nitrospirales 99 seqs 2.29.1.1.1 Nitrospiraceae 99 seqs 2.29.1.1.1.1 sf_1 39 seqs 2.29.1.1.1.1.179 OTU 1 seq prokMSA_id:60596 AF407702.1 Great Artesian Basin clone G19 2.29.1.1.1.1.199 OTU 1 seq prokMSA_id:1443 X82559.1 Nitrospira marina 2.29.1.1.1.1.216 OTU 1 seq prokMSA_id:1449 AB015550.1 deep-sea sediment clone BD3-8 2.29.1.1.1.1.269 OTU 1 seq prokMSA_id:70898 AJ347039.1 sponge clone TK24 2.29.1.1.1.1.543 OTU 1 seq prokMSA_id:47795 AF422590.1 clone t015 2.29.1.1.1.1.854 OTU 1 seq prokMSA_id:1495 AJ007648.1 1404-16 clone 1404-16 2.29.1.1.1.1.860 OTU 15 seqs prokMSA_id:1460 Y14636.1 nitrifying sludge clone RC11 prokMSA_id:1461 Y14637.1 nitrifying sludge clone RC14 prokMSA_id:1462 Y14638.1 nitrifying sludge clone RC19 prokMSA_id:1463 Y14639.1 nitrifying sludge clone RC25 prokMSA_id:1464 Y14640.1 nitrifying sludge clone RC7 prokMSA_id:1465 Y14641.1 nitrifying sludge clone RC73 prokMSA_id:1466 Y14642.1 nitrifying sludge clone RC90 prokMSA_id:1467 Y14643.1 nitrifying sludge clone RC99 prokMSA_id:1471 AJ224038.1 nitrifying sludge clone b2 prokMSA_id:1473 AJ224040.1 nitrifying sludge clone b18 prokMSA_id:1474 AJ224041.1 nitrifying sludge clone b30 prokMSA_id:1480 AF033558.1 nitrifying sludge clone A-11 prokMSA_id:1481 AF033559.1 nitrifying sludge clone A-4 prokMSA_id:1493 AF155154.1 nitrifying sludge clone SBR2016 prokMSA_id:19768 AF314422.1 aerobic phosphorus-removal ecosystem clone PHOS-HE34 2.29.1.1.1.1.864 OTU 16 seqs prokMSA_id:1468 Y14644.1 nitrifying sludge clone GC86 prokMSA_id:1472 AJ224039.1 nitrifying sludge clone g6 prokMSA_id:1475 AJ224042.1 nitrifying sludge clone o9 prokMSA_id:1490 AF035813.1 nitrifying sludge clone Hovanec prokMSA_id:1491 AF155152.1 nitrifying sludge clone SBR1015 prokMSA_id:1492 AF155153.1 nitrifying sludge clone SBR1024 prokMSA_id:1494 AF155155.1 nitrifying sludge clone SBR2046 prokMSA_id:38830 AF293010.1 ferromanganous micronodule clone MNC2 prokMSA_id:50234 AF418966.1 USA: Colorado Fort collins Horsetooth Reservoir clone HT2BB6 prokMSA_id:85357 AY221079.2 Mammoth cave clone CCU23 prokMSA_id:88224 AY328760.1 drinking water system simulator clone DSSD62 prokMSA_id:88698 AY328715.1 drinking water system simulator clone DSSD16 prokMSA_id:93640 AJ582041.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-2 prokMSA_id:102267 AY532585.1 uranium-contaminated aquifer clone 1013-28-CG50 prokMSA_id:110431 AJ617919.1 oxic-anoxic interphase flooded paddy soil clone D14423 prokMSA_id:111105 AJ617917.1 oxic-anoxic interphase flooded paddy soil clone D02307 2.29.1.1.1.1.984 OTU 2 seqs prokMSA_id:75438 AJ519405.1 uranium mining waste pile clone JG37-AG-131 sp. prokMSA_id:76201 AJ519620.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-70 2.29.1.1.1.2 sf_2 19 seqs 2.29.1.1.1.2.1058 OTU 1 seq prokMSA_id:75520 AJ534688.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN131 bacterium 2.29.1.1.1.2.16 OTU 1 seq prokMSA_id:1528 L22045.1 Kopczynski clone OPI-2 2.29.1.1.1.2.18 OTU 1 seq prokMSA_id:1529 AF027001.1 hot spring clone OPB67A 2.29.1.1.1.2.287 OTU 4 seqs prokMSA_id:1523 X96726.1 Thermodesulfovibrio islandicus prokMSA_id:1531 AB021303.1 Thermodesulfovibrio sp. TGL-LS1 prokMSA_id:1532 AB021304.1 Thermodesulfovibrio sp. TSL-P1 prokMSA_id:23948 AF402981.1 hot spring clone bacteriap39 2.29.1.1.1.2.366 OTU 1 seq prokMSA_id:63218 AF524008.1 forested wetland clone FW114 2.29.1.1.1.2.443 OTU 1 seq prokMSA_id:34433 AY050588.1 MCB-contaminated groundwater-treating reactor clone GOUTA19 2.29.1.1.1.2.518 OTU 1 seq prokMSA_id:51852 AF286037.1 mercury and PCB contaminated saltmarsh sediment clone LCP-6 LCP-6 2.29.1.1.1.2.542 OTU 1 seq prokMSA_id:63221 AF524005.1 forested wetland clone FW19 2.29.1.1.1.2.544 OTU 1 seq prokMSA_id:63223 AF524004.1 forested wetland clone FW5 2.29.1.1.1.2.577 OTU 2 seqs prokMSA_id:27466 AF255602.1 hot spring clone SRI-237 prokMSA_id:46856 AF255603.1 hot spring clone SRI-9 2.29.1.1.1.2.643 OTU 1 seq prokMSA_id:43630 AF361215.1 2.29.1.1.1.2.655 OTU 1 seq prokMSA_id:77126 AJ534687.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN30 bacterium 2.29.1.1.1.2.681 OTU 1 seq prokMSA_id:63220 AF524006.1 forested wetland clone FW27 2.29.1.1.1.2.697 OTU 1 seq prokMSA_id:63224 AF524003.1 forested wetland clone FW118 2.29.1.1.1.2.982 OTU 1 seq prokMSA_id:30232 AF424404.1 Nitrospira group clone MERTZ_2CM_109 2.29.1.1.1.3 sf_3 40 seqs 2.29.1.1.1.3.157 OTU 12 seqs prokMSA_id:1509 X86776.1 Leptospirillum ferrooxidans strain L15 prokMSA_id:1510 AF047641.1 acid mine drainage site Iron Mountain CA clone TRA1-10 TRA1-10 prokMSA_id:17118 AF356834.1 Leptospirillum ferrooxidans str. CF12 prokMSA_id:17578 AF356837.1 Leptospirillum ferrooxidans str. P3a prokMSA_id:24590 AF356835.1 Leptospirillum ferrooxidans str. Chil-Lf2 prokMSA_id:28578 AF356832.1 Leptospirillum ferrooxidans str. 49879 prokMSA_id:30465 AF356838.1 Leptospirillum ferrooxidans str. Parys prokMSA_id:39980 AF356839.1 Leptospirillum ferrooxidans str. Sy prokMSA_id:40142 AF376016.1 Leptospirillum sp. str. NOen1 prokMSA_id:41859 AF356833.1 Leptospirillum ferrooxidans str. BCT2 prokMSA_id:58308 AF543510.1 acid mine drainage clone BA39 prokMSA_id:105267 AY495960.1 Leptospirillum ferrooxidans str. WJ71 2.29.1.1.1.3.194 OTU 18 seqs prokMSA_id:1499 X86772.1 acid mine drainage clone OS17 prokMSA_id:1500 M79383.1 "Leptospirillum" sp. strain BU-1 prokMSA_id:1503 X72852.1 "Leptospirillum" sp. strain Lf30-A prokMSA_id:1507 X86773.1 acid mine drainage clone OS7 prokMSA_id:28124 AF460981.1 Leptospirillum sp. clone K01 prokMSA_id:29535 AF356830.1 Leptospirillum ferriphilum prokMSA_id:29635 AJ295688.1 Leptospirillum sp. str. TzT-JG-3 prokMSA_id:34533 AJ295685.1 Leptospirillum ferrooxidans str. TzT-B1-K3 prokMSA_id:38108 AJ237903.1 Leptospirillum sp. str. DSM 2391 prokMSA_id:38542 AJ295686.1 Leptospirillum ferrooxidans str. TzT-B1-K4 prokMSA_id:38928 AJ237902.1 Leptospirillum sp. LA prokMSA_id:39717 AF356829.1 Leptospirillum ferriphilum str. ATCC 49881 prokMSA_id:41525 AJ295687.1 Leptospirillum sp. str. TzT-JG-24 prokMSA_id:43208 AF460983.1 Leptospirillum sp. clone K16 prokMSA_id:45840 AF225449.1 acid mine drainage biofilm clone BA24 prokMSA_id:50647 AF356831.1 Leptospirillum ferriphilum str. Warwick prokMSA_id:56048 AF513709.1 Leptospirillum sp. str. MT6 prokMSA_id:104809 AY485647.1 Leptospirillum ferriphilum LF-104 2.29.1.1.1.3.240 OTU 3 seqs prokMSA_id:56204 AF543509.1 acid mine drainage clone BA33 prokMSA_id:58317 AF543501.1 acid mine drainage clone AW4 prokMSA_id:63293 AF523925.1 forested wetland clone RCP2-12 2.29.1.1.1.3.611 OTU 1 seq prokMSA_id:58314 AF543503.1 acid mine drainage clone AW11 2.29.1.1.1.3.833 OTU 6 seqs prokMSA_id:54251 AF225448.1 acid mine drainage clone BA29 prokMSA_id:58150 AF544226.1 acid mine drainage clone ASL9 prokMSA_id:58311 AF543502.1 acid mine drainage clone AW5 prokMSA_id:58316 AF543500.1 acid mine drainage clone AW1 prokMSA_id:63295 AF523924.1 forested wetland clone RCP1-70 prokMSA_id:107065 AF543497.1 acid mine drainage clone AS9 2.29.1.1.1.4 sf_4 1 seq 2.29.1.1.1.4.10243 OTU 1 seq prokMSA_id:42281 AF351231.1 upgradient coal tar waste-contaminated groundwater clone 4-29 sp. 2.3 Actinobacteria 3454 seqs 2.3.1 Actinobacteria 3439 seqs 2.3.1.1 Acidimicrobiales 63 seqs 2.3.1.1.1 Acidimicrobiaceae 32 seqs 2.3.1.1.1.1 sf_1 31 seqs 2.3.1.1.1.1.1088 OTU 1 seq prokMSA_id:58318 AF543499.1 acid mine drainage clone ASL8 2.3.1.1.1.1.1090 OTU 1 seq prokMSA_id:58319 AY140240.1 Acidimicrobium sp. str. Y0018 2.3.1.1.1.1.1155 OTU 2 seqs prokMSA_id:37993 AF251436.1 Ferromicrobium acidophilum prokMSA_id:58323 AF543498.1 acid mine drainage clone ASL4 2.3.1.1.1.1.1169 OTU 1 seq prokMSA_id:11632 X92702.1 peat bog clone TM187 2.3.1.1.1.1.1176 OTU 1 seq prokMSA_id:13505 X92701.1 peat bog clone TM177 2.3.1.1.1.1.1211 OTU 1 seq prokMSA_id:56590 AF523911.1 forested wetland clone RCP1-34 2.3.1.1.1.1.1282 OTU 6 seqs prokMSA_id:11394 X92703.1 peat bog clone TM208 prokMSA_id:11398 X92709.1 peat bog clone TM232 prokMSA_id:11401 X92697.1 peat bog clone TM81 prokMSA_id:63226 AF524000.1 forested wetland clone FW103 prokMSA_id:75499 AJ519394.1 uranium mining waste pile clone JG37-AG-8 prokMSA_id:112999 AY913538.1 forest soil clone DUNssu365 2.3.1.1.1.1.1288 OTU 1 seq prokMSA_id:43490 AF225451.1 acid mine drainage-runoff clone BA84 2.3.1.1.1.1.1360 OTU 1 seq prokMSA_id:63301 AF523917.1 forested wetland clone RCP2-103 2.3.1.1.1.1.1392 OTU 1 seq prokMSA_id:63313 AF523906.1 forested wetland clone RCP1-77 2.3.1.1.1.1.1499 OTU 1 seq prokMSA_id:11419 U75647.1 Acidimicrobium ferrooxidans 2.3.1.1.1.1.1524 OTU 1 seq prokMSA_id:11396 X92705.1 peat bog clone TM213 2.3.1.1.1.1.1532 OTU 1 seq prokMSA_id:11399 X92695.1 peat bog clone TM56 2.3.1.1.1.1.1560 OTU 1 seq prokMSA_id:11426 X92710.1 peat bog clone TM262 2.3.1.1.1.1.1749 OTU 6 seqs prokMSA_id:63303 AF523916.1 forested wetland clone RCP2-2 prokMSA_id:63304 AF523915.1 forested wetland clone RCP2-57 prokMSA_id:113429 AY913489.1 forest soil clone DUNssu289 prokMSA_id:113475 AY913475.1 forest soil clone DUNssu275 prokMSA_id:113492 AY913562.1 forest soil clone DUNssu390 prokMSA_id:113656 AY913578.1 forest soil clone DUNssu437 2.3.1.1.1.1.1791 OTU 1 seq prokMSA_id:84258 AY221045.1 Mammoth cave clone CCM13a 2.3.1.1.1.1.1853 OTU 1 seq prokMSA_id:75774 AJ532727.1 uranium mining waste pile clone JG34-KF-316 2.3.1.1.1.1.2014 OTU 1 seq prokMSA_id:63126 AY093455.1 marine sediment clone MB-A2-100 2.3.1.1.1.1.2030 OTU 1 seq prokMSA_id:63305 AF523914.1 forested wetland clone RCP1-33 2.3.1.1.1.1.2031 OTU 1 seq prokMSA_id:63308 AF523909.1 forested wetland clone RCP1-83 2.3.1.1.1.2 sf_2 1 seq 2.3.1.1.1.2.1330 OTU 1 seq prokMSA_id:11547 AF110142.1 environmental recovered bulk plankton sample taken 80m depth Sargasso Sea clone SAR432 SAR432 2.3.1.1.2 Microthrixineae 9 seqs 2.3.1.1.2.1 sf_12 1 seq 2.3.1.1.2.1.1721 OTU 1 seq prokMSA_id:65445 AY102341.1 heavy metal-contaminated soil clone a13156 2.3.1.1.2.2 sf_1 8 seqs 2.3.1.1.2.2.1408 OTU 1 seq prokMSA_id:11402 AF186411.1 sponge symbiont clone PAUC32f 2.3.1.1.2.2.1538 OTU 1 seq prokMSA_id:11421 X82546.1 "Microthrix parvicella" 2.3.1.1.2.2.1576 OTU 1 seq prokMSA_id:56545 AF454307.1 actinobacterium clone ML817J-10 2.3.1.1.2.2.1964 OTU 2 seqs prokMSA_id:60627 AF406548.1 bacterioplankton clone AEGEAN_247 prokMSA_id:60629 AF406545.1 bacterioplankton clone AEGEAN_241 2.3.1.1.2.2.2028 OTU 3 seqs prokMSA_id:12524 X89561.1 "Microthrix parvicella" prokMSA_id:12525 X89774.1 "Microthrix parvicella" prokMSA_id:12527 X89560.1 "Microthrix parvicella" 2.3.1.1.3 Unclassified 22 seqs 2.3.1.1.3.1 sf_1 21 seqs 2.3.1.1.3.1.1100 OTU 1 seq prokMSA_id:34259 AY013691.1 polluted aquifer clone BVC83 2.3.1.1.3.1.1138 OTU 7 seqs prokMSA_id:21407 AF418963.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTG6 prokMSA_id:27816 AJ277699.1 prokMSA_id:39516 AF418962.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTG5 prokMSA_id:52532 AJ232864.1 rhizoplane Lolium perenne clone LRE25 prokMSA_id:61737 AJ416173.1 Netherlands:Lake IJssel clone Urk0-14 prokMSA_id:71699 AJ416178.1 Netherlands:Lake IJssel clone Sta1-26 prokMSA_id:86141 AJ555217.1 agricultural soil under organic management clone AOF4 2.3.1.1.3.1.1166 OTU 1 seq prokMSA_id:11631 X92698.1 peat bog clone TM112 2.3.1.1.3.1.1217 OTU 1 seq prokMSA_id:67031 AJ306762.2 DCP-dechlorinating consortium clone SHA-34 2.3.1.1.3.1.1256 OTU 1 seq prokMSA_id:79537 AF382135.1 bacterioplankton clone ZA3612c 2.3.1.1.3.1.1318 OTU 1 seq prokMSA_id:48649 AF391981.1 thermal soil clone YNPFFP40 2.3.1.1.3.1.1391 OTU 1 seq prokMSA_id:11400 X92696.1 peat bog clone TM62 2.3.1.1.3.1.1412 OTU 2 seqs prokMSA_id:39131 AJ290022.1 Germany: Lake Fuchskuhle south basin clone FukuS5 FukuS5 prokMSA_id:98880 AJ575548.1 freshwater clone SW3 2.3.1.1.3.1.1632 OTU 3 seqs prokMSA_id:80107 AF468234.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-52 prokMSA_id:80505 AF468240.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-66 prokMSA_id:80675 AF468297.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-43 2.3.1.1.3.1.1666 OTU 1 seq prokMSA_id:60151 AJ347072.1 clone TK99 2.3.1.1.3.1.1830 OTU 1 seq prokMSA_id:12861 X92706.1 peat bog clone TM214 2.3.1.1.3.1.2050 OTU 1 seq prokMSA_id:11536 X92700.1 peat bog clone TM167 2.3.1.1.3.2 sf_2 1 seq 2.3.1.1.3.2.1811 OTU 1 seq prokMSA_id:79512 AF382115.1 bacterioplankton clone ZA3111c 2.3.1.2 Actinomycetales 3201 seqs 2.3.1.2.1 Acidothermaceae 1 seq 2.3.1.2.1.1 sf_1 1 seq 2.3.1.2.1.1.1399 OTU 1 seq prokMSA_id:75656 AJ532700.1 uranium mill tailings clone Gitt-KF-183 2.3.1.2.10 Dermatophilaceae 11 seqs 2.3.1.2.10.1 sf_1 11 seqs 2.3.1.2.10.1.1216 OTU 1 seq prokMSA_id:81808 AY218605.1 penguin droppings sediments clone KD3-138 2.3.1.2.10.1.1358 OTU 1 seq prokMSA_id:22538 AF109793.2 activated sludge clone lpha7 2.3.1.2.10.1.1389 OTU 1 seq prokMSA_id:26586 AJ243919.1 Dermatophilus chelonae str. DSM 44178 2.3.1.2.10.1.1523 OTU 1 seq prokMSA_id:40713 AF287753.1 "Dermabacter" sp. oral strain B46KS 2.3.1.2.10.1.1700 OTU 1 seq prokMSA_id:40007 AF109792.2 Kineosphaera limosa str. lpha5 2.3.1.2.10.1.1814 OTU 3 seqs prokMSA_id:12540 L40615.1 Dermatophilus congolensis prokMSA_id:12541 M59057.1 Dermatophilus congolensis prokMSA_id:18159 AJ243918.1 Dermatophilus congolensis str. DSM 44180 2.3.1.2.10.1.1827 OTU 1 seq prokMSA_id:33876 AF226615.1 Dermatophilus crocodyli str. TVS 96-490-7B 2.3.1.2.10.1.1852 OTU 1 seq prokMSA_id:86198 AB096085.1 Tonsillophilus suis str. HT1-19 2.3.1.2.10.1.1990 OTU 1 seq prokMSA_id:62967 AF527583.1 EBPR sludge lab scale clone LPB21 2.3.1.2.11 Dietziaceae 30 seqs 2.3.1.2.11.1 sf_1 30 seqs 2.3.1.2.11.1.1143 OTU 1 seq prokMSA_id:13338 X86632.1 Rhodococcus sp. str. AC-43 2.3.1.2.11.1.1302 OTU 7 seqs prokMSA_id:13340 AB002634.1 deepest sea mud Mariana Trench clone prokMSA_id:13345 X76704.1 Rhodococcus species prokMSA_id:20345 Y08312.1 Dietzia sp. str. CIP104289 prokMSA_id:20469 X92156.1 Little Lake Naivasha isolate 14LN1 prokMSA_id:38355 AY028326.1 Dietzia sp. str. ES18 prokMSA_id:43960 X92157.1 Dietzia natronolimnaea str. 15LN1; CBS 107.95 prokMSA_id:77557 AY167849.1 Dietzia maris str. SAFR-019 2.3.1.2.11.1.1662 OTU 1 seq prokMSA_id:34366 AB049630.1 Dietzia psychralcaliphila str. ILA-1 2.3.1.2.11.1.1872 OTU 15 seqs prokMSA_id:13334 X79290.1 Dietzia maris prokMSA_id:13335 Y17518.1 Dietzia sp. str. 147 prokMSA_id:13337 Y18883.1 Dietzia maris prokMSA_id:13339 AB010905.1 Dietzia sp. str. JTS6455-250 JC250 prokMSA_id:13341 X79291.1 Dietzia maris prokMSA_id:13342 AB010904.1 Dietzia sp. str. JTS6048-306 JoyR prokMSA_id:13344 X81920.1 Dietzia maris prokMSA_id:35177 Y08311.1 Dietzia maris str. R27 prokMSA_id:77352 AY167848.1 Dietzia maris str. SAFR-020 prokMSA_id:78736 AB094465.1 Dietzia sp. str. 2216.35.9 prokMSA_id:81642 AY205297.1 Dietzia sp. str. CR1-3 prokMSA_id:89054 AF537361.1 Dietzia maris str. RE20 prokMSA_id:93197 AY360062.1 Dietzia maris str. 32D prokMSA_id:108599 AY745816.1 Dietzia sp. str. JL-S7 prokMSA_id:111166 AY831396.1 Dietzia sp. str. A14101 2.3.1.2.11.1.1970 OTU 6 seqs prokMSA_id:44836 Y08313.1 Dietzia sp. str. CIP104293 prokMSA_id:65416 AF513105.1 activated sludge foam clone 799 prokMSA_id:65421 AF513099.1 activated sludge foam clone 61 prokMSA_id:65423 AF513097.1 activated sludge foam clone 53 prokMSA_id:65438 AF513084.1 activated sludge foam clone 10 prokMSA_id:68351 AF481211.1 Dietzia sp. str. E9_2 2.3.1.2.12 Frankiaceae 37 seqs 2.3.1.2.12.1 sf_1 37 seqs 2.3.1.2.12.1.1105 OTU 1 seq prokMSA_id:11620 AF063641.1 Frankia sp 2.3.1.2.12.1.1121 OTU 1 seq prokMSA_id:11621 L43597.1 rhizosphere clone L43597 2.3.1.2.12.1.1122 OTU 1 seq prokMSA_id:11622 L43598.1 rhizosphere clone L43598 2.3.1.2.12.1.1153 OTU 1 seq prokMSA_id:48363 AY053479.1 gas hydrate clone AT425_EubY10 2.3.1.2.12.1.1161 OTU 12 seqs prokMSA_id:11453 L40612.1 Frankia sp. argp5 prokMSA_id:11540 M55343.1 Frankia sp. ORS020606 prokMSA_id:11624 U60284.1 Frankia sp.Darj16 prokMSA_id:11626 U60287.1 Frankia sp. str. Shil19 prokMSA_id:11637 L40613.1 Frankia sp.AVN17 prokMSA_id:11682 U60285.1 Frankia sp. Darj18 prokMSA_id:11692 L40622.1 "Frankia myricanod" prokMSA_id:11704 AF158687.1 Frankia sp. FE12 prokMSA_id:22175 AJ408871.1 Frankia sp. M16464 prokMSA_id:34093 AJ408876.1 Frankia sp. MRn2-2 prokMSA_id:99293 AY502034.1 Frankia sp. str. FMr61 prokMSA_id:99752 AY502037.1 Frankia sp. str. FCg07 2.3.1.2.12.1.1286 OTU 8 seqs prokMSA_id:11503 L40618.1 Frankia species prokMSA_id:11534 L40617.1 Frankia sp. HR27-14 prokMSA_id:11535 AF063640.1 Frankia sp prokMSA_id:11629 L40619.1 Frankia species prokMSA_id:11630 AF063642.1 Frankia sp. FE39 prokMSA_id:42219 AJ408875.1 Frankia sp. Sn5-8 prokMSA_id:93808 AJ549325.1 Frankia sp. BMG5.12 prokMSA_id:94110 AJ549324.1 Frankia sp. str. BMG5.4 2.3.1.2.12.1.1613 OTU 3 seqs prokMSA_id:36404 AJ277691.1 prokMSA_id:43222 AJ277693.1 prokMSA_id:50077 AJ277700.1 2.3.1.2.12.1.1635 OTU 3 seqs prokMSA_id:11537 U72717.1 Frankia sp. str. Cea1.3 prokMSA_id:11538 U72718.1 Frankia sp. str. Cea5.1 prokMSA_id:40609 AJ408869.1 Frankia sp. M16386 2.3.1.2.12.1.1643 OTU 1 seq prokMSA_id:111476 X53209.1 Frankia sp. 7 2.3.1.2.12.1.1644 OTU 5 seqs prokMSA_id:11548 L40610.1 Frankia species prokMSA_id:11598 M88466.1 Frankia species prokMSA_id:11625 U60286.1 Frankia sp. str. lawj13 prokMSA_id:18201 AJ408870.1 Frankia sp. M16467 prokMSA_id:52184 AJ408872.1 Frankia sp. MpI1 2.3.1.2.12.1.1994 OTU 1 seq prokMSA_id:11544 L40611.1 Frankia sp. Agb1-9 2.3.1.2.13 Geodermatophilaceae 11 seqs 2.3.1.2.13.1 sf_1 11 seqs 2.3.1.2.13.1.1245 OTU 1 seq prokMSA_id:51600 AF131367.1 Geodermatophilus sp. IM-1092 str. IM 1092 2.3.1.2.13.1.1694 OTU 1 seq prokMSA_id:11440 X92355.1 Geodermatophilus obscurus subsp. dictyosporus str. DSM 43161 2.3.1.2.13.1.1742 OTU 7 seqs prokMSA_id:11425 L40614.1 Blastococcus aggregatus prokMSA_id:11427 X92364.1 Geodermatophilus G1S leachate landfill Vancouver Canada prokMSA_id:18910 AJ316571.1 Blastococcus saxobsidens str. BC448 prokMSA_id:40121 AJ430193.1 Blastococcus aggregatus str. DSM 4725T prokMSA_id:43433 AJ316572.1 Blastococcus saxobsidens str. BC517 prokMSA_id:46074 AJ316570.1 Blastococcus saxobsidens str. BC512 prokMSA_id:74541 AJ316573.1 Blastococcus sp. str. BC521 2.3.1.2.13.1.1973 OTU 1 seq prokMSA_id:11435 X92360.1 Geodermatophilus A7S basalt outcrop Sonora desert USA 2.3.1.2.13.1.1985 OTU 1 seq prokMSA_id:11438 X92366.1 Geodermatophilus G6 white marble Athens Greece 2.3.1.2.14 Glycomycetaceae 5 seqs 2.3.1.2.14.1 sf_1 5 seqs 2.3.1.2.14.1.1870 OTU 1 seq prokMSA_id:12831 D85482.1 Glycomyces tenuis str. IFO15904 2.3.1.2.14.1.1938 OTU 4 seqs prokMSA_id:12832 D85483.1 Glycomyces harbinensis str. IFO14487 prokMSA_id:33446 AJ293747.1 Glycomyces harbinensis str. IMSNU 20070T prokMSA_id:42225 AJ293748.1 Glycomyces rutgersensis str. IMSNU 22074T prokMSA_id:99009 AY462041.1 Glycomyces lechevalierae str. NRRL B-16149 2.3.1.2.15 Gordoniaceae 73 seqs 2.3.1.2.15.1 sf_1 73 seqs 2.3.1.2.15.1.1116 OTU 6 seqs prokMSA_id:13283 X79286.1 Gordona terrae prokMSA_id:13284 AF154833.1 Gordonia terrae str. MZ 230973 prokMSA_id:13285 X92483.1 Gordonia sp prokMSA_id:13286 X92482.1 Gordonia terrae str. CDC W5151 prokMSA_id:13311 X81922.1 Gordona terrae prokMSA_id:68728 AF479377.1 glacial ice isolate str. SIA1K-2A1 2.3.1.2.15.1.1184 OTU 25 seqs prokMSA_id:13287 X87318.1 Actinomycetaceae SR 259 prokMSA_id:13291 X81915.1 Gordona rubropertinctus prokMSA_id:13292 AB010903.1 Gordonia sp. str. IBT2679-051 JoyT prokMSA_id:13293 AF101416.1 Gordonia desulfuricans str. 213E; NCIMB 40816 prokMSA_id:13294 AF101417.1 Gordonia desulfuricans str. 213F; NCIMB 40817 prokMSA_id:13312 X80632.1 Gordona rubropertinctus prokMSA_id:13313 AF101418.1 Gordonia amicalis str. IEGM prokMSA_id:13324 X79287.1 Gordona bronchialis prokMSA_id:13325 AB023368.1 Gordonia rhizosphera str. IFO 16247 prokMSA_id:13326 X81919.1 Gordona bronchialis prokMSA_id:13329 X75903.1 Gordona bronchialis prokMSA_id:16517 AF467984.1 Gordonia terrae str. COE-O1 prokMSA_id:17608 AJ312907.1 Gordonia westfalica str. Kb1/Kb2 prokMSA_id:25110 AF148947.1 Gordonia nitida str. LE31 prokMSA_id:27224 Y18054.1 Gordonia alkanivorans prokMSA_id:38169 AF380931.1 Gordonia namibiensis str. NAM-BN063B prokMSA_id:41303 AF380930.1 Gordonia namibiensis str. NAM-BN063A prokMSA_id:47244 AB065369.1 Gordonia alkanivorans prokMSA_id:62869 AF397061.1 Gordonia terrae str. AB111113 prokMSA_id:69925 AB004729.1 Gordonia rhizosphera str. IFO16068T prokMSA_id:88069 AY277554.1 Gordonia rubripertinctus str. AGP1-3 prokMSA_id:96137 AJ586615.1 Gordonia rubripertinctus str. NCIMB 12566 Corynebacterium sp. = Rhodococcus rhodochrous 7E1C prokMSA_id:100030 AJ784814.1 Gordonia rubripertinctus str. 7E1C prokMSA_id:108257 AY771336.1 Gordonia amicalis str. CC-S5-7 prokMSA_id:111651 AY864338.1 Gordonia alkanivorans str. CC-JG39 2.3.1.2.15.1.1191 OTU 6 seqs prokMSA_id:13296 X80635.1 Gordona amarae prokMSA_id:13297 X82243.1 Gordonia amarae str. UQM prokMSA_id:13299 AF020330.1 Gordonia amarae str. SE-102; ATCC27809 prokMSA_id:13300 AF020331.1 Gordonia amarae str. ASF3 prokMSA_id:13307 X80601.1 Gordona amarae prokMSA_id:13310 X75902.1 Gordona amarae 2.3.1.2.15.1.1200 OTU 1 seq prokMSA_id:78149 AB089078.1 termite gut homogenate clone Rs-K09 bacterium 2.3.1.2.15.1.1207 OTU 14 seqs prokMSA_id:13298 AF020329.1 Gordonia amarae str. ASAC1 prokMSA_id:13301 AF020332.1 Gordonia amarae str. NM23 prokMSA_id:13303 X87340.1 Gordona hydrophobica prokMSA_id:13314 X81925.1 Gordona aichiensis prokMSA_id:13315 X80633.1 Gordona aichiensis prokMSA_id:13316 X81924.1 Gordona sputi prokMSA_id:13317 X80627.1 Rhodococcus chubuensis prokMSA_id:13318 X80634.1 Gordona sputi prokMSA_id:13319 X92484.1 Gordonia sputi str. CDC W5640 prokMSA_id:13320 X92481.1 Gordonia sp. str. CDC W4604 prokMSA_id:13321 AF150493.1 Gordonia sp. str. SCNU1 prokMSA_id:41790 AF323266.1 bioreactor processing inorganic sulfide and mercaptans isolate str. W5P-2 W5P-2 prokMSA_id:42155 AJ416151.1 Gordonia sihwensis str. DSM 44576 prokMSA_id:74558 AF251791.1 Gordonia jacobaea str. MV-1 2.3.1.2.15.1.1209 OTU 2 seqs prokMSA_id:32142 X85245.1 Gordonia sp. str. J4 prokMSA_id:48423 X85243.1 Gordonia sp. str. J59 2.3.1.2.15.1.1491 OTU 4 seqs prokMSA_id:31840 X85238.1 Gordonia-like sp. (strain J82) isolate str. J82 prokMSA_id:42979 X85244.1 Gordonia-like sp. (strain J81) isolate str. J81 J81 prokMSA_id:99032 AY534742.1 Millisia brevis str. J81 prokMSA_id:99194 AY534743.1 Millisia brevis str. J82 2.3.1.2.15.1.1518 OTU 1 seq prokMSA_id:36832 AJ251724.1 Gordonia spumae str. T4 2.3.1.2.15.1.1545 OTU 1 seq prokMSA_id:64754 AY115594.1 Gordonia sp. str. FWA92 2.3.1.2.15.1.1567 OTU 1 seq prokMSA_id:64242 AF517683.1 oily sludge s collected offshore island Singapore isolate str. PSRB3 2.3.1.2.15.1.1645 OTU 1 seq prokMSA_id:13302 X93485.1 Gordonia hirsuta str. DSM 44140T 2.3.1.2.15.1.1654 OTU 5 seqs prokMSA_id:13327 Y18310.1 Gordonia polyisoprenivorans str. DSM 44302 prokMSA_id:17721 AJ344450.1 Gordonia polyisoprenivorans str. VH2 prokMSA_id:25722 AB054838.1 Gordonia polyisoprenivorans str. P8219 prokMSA_id:38457 AF416719.1 Gordonia polyisoprenivorans str. Y2K prokMSA_id:73085 AJ313023.1 Gordonia sp. MN 110a 2.3.1.2.15.1.1891 OTU 1 seq prokMSA_id:71243 AF380834.1 Gordonia sinesedis str. DSM44455 2.3.1.2.15.1.2022 OTU 5 seqs prokMSA_id:13330 Z35435.1 Skermania pinensis prokMSA_id:46901 AJ416152.1 Skermania piniformis str. DSM 43998T prokMSA_id:108831 AY788092.1 Skermania piniformis str. J20 prokMSA_id:108832 AY788093.1 Skermania piniformis str. J50 prokMSA_id:108833 AY788094.1 Skermania piniformis str. J54 2.3.1.2.16 Intrasporangiaceae 53 seqs 2.3.1.2.16.1 sf_1 53 seqs 2.3.1.2.16.1.1139 OTU 15 seqs prokMSA_id:12365 Y08539.1 Janibacter limosus prokMSA_id:12366 U96645.1 Terrabacter sp. str. DDE-1 prokMSA_id:12370 Y08540.1 Janibacter limosus str. DSM 11141T prokMSA_id:18874 AF125090.1 Tetrasphaera australiensis str. 110; ACM 5118 prokMSA_id:21157 AF125091.1 Tetrasphaera australiensis str. 109; ACM 5117 prokMSA_id:26805 Y14597.1 Candidatus Nostocoida limicola str. Ben67 prokMSA_id:31576 AB016439.1 Janibacter terrae str. 16N prokMSA_id:37445 AF387314.1 EBPR sludge clone GCP69 prokMSA_id:49344 AJ294413.1 Knoellia subterranea str. HKI 0120 DSM 12332 = CIP 106776 prokMSA_id:56542 AF513087.1 activated sludge foam clone 14 prokMSA_id:61984 AJ244673.2 Janibacter-like sp. str. V4.BE.21 = MM_2393 V4.BE.21 prokMSA_id:65233 AB070465.1 Terrabacter sp. str. YK14 prokMSA_id:65241 AB070460.1 Terrabacter sp. str. YK7 prokMSA_id:65242 AB070459.1 Terrabacter sp. str. YK3 prokMSA_id:75998 AB089480.1 Janibacter sp. str. YY-1 2.3.1.2.16.1.1218 OTU 1 seq prokMSA_id:65431 AF513091.1 activated sludge foam clone 17 2.3.1.2.16.1.1225 OTU 9 seqs prokMSA_id:12371 AB030911.1 Tetrasphaera elongata str. Lp2 prokMSA_id:24977 AF387308.1 EBPR sludge clone SBRA282 prokMSA_id:25117 AF387307.1 EBPR sludge clone SBRA22 prokMSA_id:32048 AF387313.1 EBPR sludge clone GCP18 prokMSA_id:46307 AB051430.1 Tetrasphaera elongata str. ASP12 prokMSA_id:50153 AF387312.1 EBPR sludge clone GCP1 prokMSA_id:51139 AF387311.1 EBPR sludge clone SBRB1 prokMSA_id:59353 AF502213.1 EBPR sludge lab scale clone HP1B09 prokMSA_id:59354 AF502212.1 EBPR sludge lab scale clone HP1A06 2.3.1.2.16.1.1301 OTU 1 seq prokMSA_id:30551 AF131371.1 Intrasporangium sp. IM-3749 str. IM 3749 2.3.1.2.16.1.1445 OTU 3 seqs prokMSA_id:49745 AJ277650.1 Ornithinimicrobium humiphilum str. DSM 12362 HKI 0124 prokMSA_id:50307 AF423286.1 soil clone 672-2 prokMSA_id:102681 AB188211.1 Ornithinimicrobium sp. str. TUT1205 2.3.1.2.16.1.1461 OTU 1 seq prokMSA_id:58688 AB072496.1 Lochheadia duodecas 2.3.1.2.16.1.1481 OTU 1 seq prokMSA_id:61983 AJ244674.2 Janibacter-like sp. str. V4.BO.43 = MM_2939 V4.BO.43 2.3.1.2.16.1.1568 OTU 1 seq prokMSA_id:45333 Y14595.1 Candidatus Nostocoida limicola str. Ver1 2.3.1.2.16.1.1638 OTU 1 seq prokMSA_id:40964 AF125092.1 Tetrasphaera japonica str. T1-X7; ACM 5116 2.3.1.2.16.1.1663 OTU 1 seq prokMSA_id:12364 Y11928.1 Terracoccus luteus str. DSM 44267 2.3.1.2.16.1.1665 OTU 1 seq prokMSA_id:12369 AF170746.1 Janibacter sp. str. QSSC8-6 2.3.1.2.16.1.1674 OTU 13 seqs prokMSA_id:12368 Y08853.1 Terrebacter sp. prokMSA_id:26312 AJ310085.1 Janibacter terrae str. DSM 13953T prokMSA_id:36954 AF176948.1 Janibacter terrae str. CS12 prokMSA_id:42562 AB016438.1 Janibacter terrae str. 10N prokMSA_id:55617 AB070457.1 Terrabacter sp. str. YK1 prokMSA_id:65231 AB070468.1 Terrabacter sp. str. YK21 prokMSA_id:65232 AB070466.1 Terrabacter sp. str. YK16 prokMSA_id:65234 AB070464.1 Terrabacter sp. str. YK13 prokMSA_id:65235 AB070463.1 Terrabacter sp. str. YK11 prokMSA_id:65236 AB070462.1 Terrabacter sp. str. YK10 prokMSA_id:65237 AB070461.1 Terrabacter sp. str. YK8 prokMSA_id:103105 AB177881.1 Janibacter sp. str. NSA5-4 prokMSA_id:108395 AY769994.1 Janibacter sp. str. XJ-1 2.3.1.2.16.1.1873 OTU 1 seq prokMSA_id:70294 AJ277696.1 2.3.1.2.16.1.1935 OTU 1 seq prokMSA_id:76746 AY154480.1 earthworm intestine clone wi06 2.3.1.2.16.1.1998 OTU 1 seq prokMSA_id:77483 AY167851.1 Knoellia sinensis str. SAFR-013 2.3.1.2.16.1.2055 OTU 2 seqs prokMSA_id:12372 X83812.1 Terrabacter tumescens prokMSA_id:24661 AF005023.1 Terrabacter tumescens str. KCTC 9133 2.3.1.2.17 Jonesiaceae 4 seqs 2.3.1.2.17.1 sf_1 4 seqs 2.3.1.2.17.1.2000 OTU 4 seqs prokMSA_id:12599 X83811.1 Jonesia denitrificans prokMSA_id:12600 X78420.1 Jonesia denitrificans str. NCTC 10816 prokMSA_id:77730 AB098584.1 Jonesia sp. str. TUT1016 prokMSA_id:78074 AB098583.1 Jonesia sp. str. TUT1015 2.3.1.2.18 Kineosporiaceae 40 seqs 2.3.1.2.18.1 sf_1 40 seqs 2.3.1.2.18.1.1087 OTU 2 seqs prokMSA_id:12691 AB003934.1 JCM9953) prokMSA_id:12700 AB003931.1 Kineosporia aurantiaca 2.3.1.2.18.1.1297 OTU 1 seq prokMSA_id:12689 AB003935.1 JCM9954) 2.3.1.2.18.1.1422 OTU 1 seq prokMSA_id:12696 AB003933.1 Kineosporia rhizophila str. I-449(=JCM9960) 2.3.1.2.18.1.1424 OTU 1 seq prokMSA_id:12697 X87311.1 Actinomycetaceae SR 139 2.3.1.2.18.1.1581 OTU 4 seqs prokMSA_id:20090 AB037007.1 Cryptosporangium minutisporangium str. IFO 15962T prokMSA_id:32913 AJ293746.1 Cryptosporangium aurantiacum str. IMSNU 22120 prokMSA_id:37020 AB047490.1 Cryptosporangium aurantiacum str. IFO 13967T prokMSA_id:39565 AB048220.1 Cryptosporangium minutisporangium str. JCM 9458T 2.3.1.2.18.1.1598 OTU 1 seq prokMSA_id:86480 AY250880.1 lichen-dominated Antarctic cryptoendolithic community clone FBP402 2.3.1.2.18.1.1862 OTU 5 seqs prokMSA_id:12692 AF060671.1 endemic to Mojave Desert isolate str. AS2988 AS2988 prokMSA_id:12693 AF060672.1 endemic to Mojave Desert isolate str. AS2987 AS2987 prokMSA_id:12694 AF060676.1 endemic to Mojave Desert isolate str. AS2978 AS2978 prokMSA_id:12695 AF060689.1 endemic to Mojave Desert isolate str. AS3187 AS3187 prokMSA_id:25938 AF060686.1 endemic to Mojave Desert isolate str. AS3138 AS3138 2.3.1.2.18.1.1893 OTU 4 seqs prokMSA_id:12686 X87110.1 Kineosporia aurantiaca str. ATCC 28727 prokMSA_id:12688 D86937.1 Kineosporia aurantiaca str. IFO14067 prokMSA_id:12699 X87617.1 Actinomycetaceae SR 11 prokMSA_id:24568 AF095336.1 Kineosporia aurantiaca str. NRLL B-16913 2.3.1.2.18.1.1896 OTU 1 seq prokMSA_id:12663 D17527.1 Kineococcus aurantiacus 2.3.1.2.18.1.1897 OTU 1 seq prokMSA_id:12665 AB007420.1 Kineococcus aurantiacus str. IFO 15268 2.3.1.2.18.1.1961 OTU 18 seqs prokMSA_id:12664 X77958.1 Kineococcus aurantiacus prokMSA_id:12666 AF060670.1 endemic to Mojave Desert isolate str. AS2989 AS2989 prokMSA_id:12667 AF060673.1 endemic to Mojave Desert isolate str. AS2960 AS2960 prokMSA_id:12668 AF060674.1 endemic to Mojave Desert isolate str. AS2964 AS2964 prokMSA_id:12669 AF060675.1 endemic to Mojave Desert isolate str. AS2965 AS2965 prokMSA_id:12670 AF060677.1 endemic to Mojave Desert isolate str. AS2985 AS2985 prokMSA_id:12671 AF060679.1 endemic to Mojave Desert isolate str. AS2953 AS2953 prokMSA_id:12672 AF060680.1 endemic to Mojave Desert isolate str. AS3041 AS3041 prokMSA_id:12673 AF060681.1 endemic to Mojave Desert isolate str. AS3042 AS3042 prokMSA_id:12675 AF060683.1 endemic to Mojave Desert isolate str. AS3080 AS3080 prokMSA_id:12676 AF060684.1 endemic to Mojave Desert isolate str. AS3088 AS3088 prokMSA_id:12677 AF060685.1 endemic to Mojave Desert isolate str. AS3090 AS3090 prokMSA_id:12679 AF060688.1 endemic to Mojave Desert isolate str. AS3148 AS3148 prokMSA_id:12680 AF060690.1 endemic to Mojave Desert isolate str. AS3380 AS3380 prokMSA_id:12682 AF060692.1 endemic to Mojave Desert isolate str. AS3382 AS3382 prokMSA_id:12683 AF060693.1 endemic to Mojave Desert isolate str. AS3630 AS3630 prokMSA_id:12684 AF060694.1 endemic to Mojave Desert isolate str. AS3635 AS3635 prokMSA_id:33896 AF095334.1 endemic to Mojave Desert isolate str. AS3642 AS3642 2.3.1.2.18.1.2015 OTU 1 seq prokMSA_id:11444 D85466.1 Cryptosporangium japonicum 2.3.1.2.19 Kribbella 15 seqs 2.3.1.2.19.1 sf_1 15 seqs 2.3.1.2.19.1.1839 OTU 15 seqs prokMSA_id:12801 AF005017.1 Nocardioides fulvus prokMSA_id:12803 Y09159.1 Hongia koreensis prokMSA_id:12804 AF005020.1 Nocardioides sp. ATCC 39419 prokMSA_id:33303 AF131633.1 Nocardioidaceae IM-7091 str. IM 7091 prokMSA_id:44933 AF131634.1 Nocardioidaceae IM-7757 str. IM 7757 prokMSA_id:45801 AF131632.1 Nocardioidaceae IM-7029 str. IM 7029 prokMSA_id:48151 AF131635.1 Nocardioidaceae IM-7770 str. IM 7770 prokMSA_id:55745 AY082062.1 Nocardioides sp. str. YIM31075 prokMSA_id:55832 AY082063.1 Kribbella antibiotica str. YIM 31530 prokMSA_id:68399 AY082061.1 Nocardioides sp. str. YIM30006 prokMSA_id:102895 AY253862.1 Kribbella solani str. DSA1 prokMSA_id:103043 AY253863.1 Kribbella flavida str. KACC 20248 prokMSA_id:103327 AY253865.1 Kribbella koreensis str. KACC 20250 prokMSA_id:103574 AF408968.1 Nocardioidaceae str. Ellin126 prokMSA_id:109721 AJ811962.1 Kribbella sp. str. LU14 2.3.1.2.2 Actinomycetaceae 97 seqs 2.3.1.2.2.1 sf_1 97 seqs 2.3.1.2.2.1.1123 OTU 4 seqs prokMSA_id:22109 AF202026.1 direct prokMSA_id:43104 AF202027.1 direct prokMSA_id:44824 AF202025.1 direct prokMSA_id:92289 AY349365.1 human oral cavity clone IP073 2.3.1.2.2.1.1129 OTU 1 seq prokMSA_id:12548 X81061.1 Actinomyces bovis str. NCTC 11535 2.3.1.2.2.1.1178 OTU 1 seq prokMSA_id:12560 X80414.1 Actinomyces gerencseriae str. DSM 6844 2.3.1.2.2.1.1181 OTU 1 seq prokMSA_id:12561 X80412.1 Actinomyces denticolens str. NCTC 11490 2.3.1.2.2.1.1183 OTU 1 seq prokMSA_id:12562 Y08828.1 Actinomyces europaeus str. CCUG 32789A 2.3.1.2.2.1.1193 OTU 3 seqs prokMSA_id:44425 AJ243892.1 Actinomyces canis prokMSA_id:47127 AJ243891.1 Actinomyces canis prokMSA_id:50842 AJ234061.1 Actinomyces sp. str. M1429/94/1 2.3.1.2.2.1.1227 OTU 23 seqs prokMSA_id:12545 X82453.1 Actinomyces viscosus str. NCTC 10951 prokMSA_id:12553 X81063.1 Actinomyces sp. str. ATCC 49338 prokMSA_id:19228 AJ234050.1 Actinomyces naeslundii str. CCUG 34285 prokMSA_id:22197 AY008315.1 Actinomyces sp. oral clone EP011 prokMSA_id:23267 AJ234049.1 Actinomyces sp. str. CCUG 33931 prokMSA_id:27124 AJ234056.1 Actinomyces viscosus str. CCUG 35332 prokMSA_id:28887 AJ234046.1 Actinomyces viscosus str. CCUG 33710 prokMSA_id:30901 AJ234048.1 Actinomyces naeslundii str. CCUG 33914 prokMSA_id:42280 AY008314.1 Actinomyces sp. oral clone EP005 prokMSA_id:45176 AJ234051.1 Actinomyces naeslundii str. CCUG 34286 prokMSA_id:46052 AF287747.1 human subgingival plaque clone AG004 prokMSA_id:46190 AF385553.1 purified crevicular epithelial cells clone BL008 prokMSA_id:47140 AJ234053.1 Actinomyces viscosus str. CCUG 34288 prokMSA_id:49418 AB062278.1 Actinomyces naeslundii prokMSA_id:50539 AJ234045.1 Actinomyces naeslundii str. CCUG 33519 prokMSA_id:58283 AF543297.1 Actinomyces sp. str. ChDC OS47 prokMSA_id:58292 AF543286.1 Actinomyces viscosus str. ChDC OS34 prokMSA_id:58304 AF543275.1 Actinomyces sp. str. ChDC B197 prokMSA_id:58541 AJ507295.1 Actinomyces oricola str. CCUG 46090 prokMSA_id:71223 AF287749.1 human subgingival plaque clone AP064 prokMSA_id:74701 AJ234052.1 Actinomyces naeslundii str. CCUG 34286 prokMSA_id:92445 AY349367.1 human oral cavity clone JA063 prokMSA_id:106166 AJ635359.1 Actinomyces naeslundii 2.3.1.2.2.1.1231 OTU 1 seq prokMSA_id:12571 X82451.1 Actinomyces meyeri str. C.I.P. 103148T 2.3.1.2.2.1.1331 OTU 1 seq prokMSA_id:33696 AJ250959.1 Arcanobacterium pluranimalium str. M430/94/2 2.3.1.2.2.1.1368 OTU 3 seqs prokMSA_id:17127 AJ243893.1 Actinomyces urogenitalis prokMSA_id:21028 AJ243894.1 Actinomyces urogenitalis prokMSA_id:40580 AJ243791.1 Actinomyces urogenitalis 2.3.1.2.2.1.1394 OTU 1 seq prokMSA_id:24150 AJ234039.1 Actinomyces bowdenii str. M1956/95/1 2.3.1.2.2.1.1429 OTU 2 seqs prokMSA_id:81251 AF487680.1 Actinobaculum schaalii str. LL prokMSA_id:81857 AF487681.1 Actinobaculum schaalii str. PA 2.3.1.2.2.1.1508 OTU 1 seq prokMSA_id:51318 AF201995.1 direct 2.3.1.2.2.1.1563 OTU 1 seq prokMSA_id:46191 AJ249326.1 Actinomyces coleocanis str. CCUG 41708 2.3.1.2.2.1.1603 OTU 4 seqs prokMSA_id:12595 X79224.1 Arcanobacterium bernardiae prokMSA_id:12597 X79225.1 Arcanobacterium pyogenes str. NCTC 5224 prokMSA_id:29935 AJ298658.2 Arcanobacterium sp. str. HJ57-14E (COR157) HJ57-14E prokMSA_id:47347 AJ298656.2 Arcanobacterium sp. str. HJ55-94AV329.2 (COR155) HJ55-94AV329.2 2.3.1.2.2.1.1614 OTU 2 seqs prokMSA_id:12593 Y12329.1 Actinobaculum schaalii str. CCUG 27420 prokMSA_id:12594 Y10773.1 Actinobaculum schaalii str. CCUG 27420 2.3.1.2.2.1.1621 OTU 6 seqs prokMSA_id:12570 X80413.1 Actinomyces georgiae str. 6843 DSM prokMSA_id:29001 AF287750.1 Actinomyces sp. oral strain str. B27SC prokMSA_id:29527 AF385521.1 Actinomyces sp. oral strain str. Hal-1065 prokMSA_id:44463 AJ271894.1 Actinomyces lingnae str. CCUG 32865 prokMSA_id:67513 AJ277385.1 Actinomyces suimastitidis str. CCUG 39276 prokMSA_id:82476 AJ427451.1 Actinomyces vaccimaxillae str. R10176T 2.3.1.2.2.1.1629 OTU 1 seq prokMSA_id:26223 AJ251986.1 Actinomyces radicidentis str. CCUG 36733T 2.3.1.2.2.1.1636 OTU 4 seqs prokMSA_id:12569 X69616.1 Actinomyces hyovaginalis prokMSA_id:22416 AJ234064.1 Actinomyces sp. str. strain P31/96/2 prokMSA_id:47631 AJ293302.1 Actinomyces hyovaginalis subsp. biotype II str. UZCOR144 prokMSA_id:94199 AF489585.1 Actinomyces hyovaginalis str. E6 2.3.1.2.2.1.1649 OTU 1 seq prokMSA_id:79234 AJ540309.1 Actinomyces graevenitzii str. CCUG 27294 2.3.1.2.2.1.1672 OTU 13 seqs prokMSA_id:12572 AF159688.1 related to Gram-positive G+C Actinomyces group prokMSA_id:12574 X78721.1 Actinomyces species prokMSA_id:18829 AJ234058.1 Actinomyces sp. str. CCUG 37290 prokMSA_id:23262 AJ234047.1 Actinomyces odontolyticus str. CCUG 33767 prokMSA_id:25517 AJ234054.1 Actinomyces odontolyticus str. CCUG 34689 prokMSA_id:28910 AJ234042.1 Actinomyces odontolyticus str. CCUG 32834 prokMSA_id:41300 AF287751.1 Actinomyces sp. oral strain str. C29KA prokMSA_id:45427 AJ234041.1 Actinomyces odontolyticus str. CCUG 28084 prokMSA_id:52899 AJ234040.1 Actinomyces odontolyticus str. CCUG 20536T prokMSA_id:70945 AF385504.1 healthy and subjects with halitosis clone CT047 oral prokMSA_id:71551 AF385505.1 healthy and subjects with halitosis clone CT068 oral prokMSA_id:74130 AF385522.1 Actinomyces sp. oral strain str. Hal-1083 prokMSA_id:87494 AY278611.1 Actinomyces genomosp. C2 str. C3M24 2.3.1.2.2.1.1684 OTU 2 seqs prokMSA_id:78533 AJ428402.1 Varibaculum cambriense str. CCUG 44998 prokMSA_id:80455 AJ491326.1 Varibaculum cambriense str. CCUG 44998 2.3.1.2.2.1.1703 OTU 3 seqs prokMSA_id:12547 X82452.1 Actinomyces slackii str. NCTC 11923 prokMSA_id:40753 AJ234066.1 Actinomyces slackii str. CCUG 32792 prokMSA_id:49536 AJ234067.1 Actinomyces slackii str. CCUG 32792 2.3.1.2.2.1.1713 OTU 1 seq prokMSA_id:12589 X82448.1 Actinomyces hordeovulneris str. C.I.P. 103149T 2.3.1.2.2.1.1752 OTU 1 seq prokMSA_id:12590 X97049.1 Arcanobacterium phocae str. DSM 10004 2.3.1.2.2.1.1755 OTU 1 seq prokMSA_id:12543 X82450.1 Actinomyces israelii str. C.I.P. 103259T 2.3.1.2.2.1.1764 OTU 1 seq prokMSA_id:12591 X73952.1 Arcanobacterium haemolyticum 2.3.1.2.2.1.1768 OTU 1 seq prokMSA_id:12592 S83623.1 Actinomyces suis 2.3.1.2.2.1.1794 OTU 1 seq prokMSA_id:23149 AF287748.1 Actinomyces sp. oral strain str. B19SC 2.3.1.2.2.1.1798 OTU 2 seqs prokMSA_id:12566 X87133.1 Bacterial sp. prokMSA_id:12567 X78720.1 Actinomyces species 2.3.1.2.2.1.1801 OTU 1 seq prokMSA_id:71888 AF487679.1 Actinobaculum massiliae str. CIP 107404 2.3.1.2.2.1.1829 OTU 1 seq prokMSA_id:19270 AF433168.1 Actinomyces hongkongensis str. HKU8 2.3.1.2.2.1.1883 OTU 2 seqs prokMSA_id:23235 AF355192.1 Actinomyces sp. str. VA20732_01 prokMSA_id:72536 AJ404889.1 Actinomyces funkei str. CCUG 42773 2.3.1.2.2.1.1906 OTU 1 seq prokMSA_id:28461 AJ234063.1 Actinomyces sp. str. M2231/94/1 2.3.1.2.2.1.2039 OTU 1 seq prokMSA_id:60136 AJ421779.1 Actinomyces cardiffensis str. CCUG 44997 2.3.1.2.2.1.2049 OTU 3 seqs prokMSA_id:16861 AJ243793.1 Arcanobacterium sp. CCUG 41704 prokMSA_id:24783 AJ234059.1 Arcanobacterium haemolyticum str. CIP 103370 prokMSA_id:25077 AJ243794.1 Arcanobacterium sp. CCUG 41705 2.3.1.2.20 Microbacteriaceae 291 seqs 2.3.1.2.20.1 sf_1 291 seqs 2.3.1.2.20.1.1086 OTU 5 seqs prokMSA_id:12281 AB012646.1 Mycetocola tolaasinivorans CM-05 prokMSA_id:12282 AB012647.1 Mycetocola saprophilus CM-01 prokMSA_id:12283 AB012648.1 Mycetocola lacteus CM-10 prokMSA_id:12284 AB020204.1 Mycetocola sp. str. OM-A1 prokMSA_id:45224 AB074152.1 Mycetocola tolaasinivorans str. OM-F11 2.3.1.2.20.1.1097 OTU 21 seqs prokMSA_id:12157 X77450.1 "Corynebacterium aquaticum" prokMSA_id:12159 M60935.1 Clavibacter xyli prokMSA_id:12162 U96183.1 Leifsonia subsp. xyli str. F1A prokMSA_id:12172 D45055.1 "Agromyces succinolyticus" prokMSA_id:12173 D45061.1 Agromyces fucosus prokMSA_id:12174 X77447.1 Agromyces ramosus prokMSA_id:12177 X77448.1 Agromyces cerinus prokMSA_id:49214 AB028940.1 Microbacteriaceae str. DB102 prokMSA_id:60321 AF539698.1 Salinibacterium amurskyense str. KMM 3670 prokMSA_id:67357 AJ438585.1 Leifsonia rubra prokMSA_id:67358 AJ438586.1 Leifsonia aurea prokMSA_id:68768 AF479332.1 glacial ice isolate str. G500K-1 prokMSA_id:69507 AF513393.1 Agreia sp. str. 37-4 prokMSA_id:70824 AF423078.1 Actinobacterium isolate str. '#33 yel' prokMSA_id:72839 AJ244680.2 France:Nice isolate str. V4.BE.53 = MM_3006 V4.BE.53 prokMSA_id:73704 AJ244675.1 Leifsonia sp. str. V4.MO.14 = MM_2315 prokMSA_id:73757 AF531474.1 acidic soil isolate str. IS1 prokMSA_id:74625 AB028941.1 Microbacteriaceae str. DB103 prokMSA_id:78023 AB074617.1 actinobacterium clone:APe2_47 clone APe2_47 prokMSA_id:84759 AJ441003.1 lake microbial mat isolate str. R-9112 prokMSA_id:85975 AF503917.1 Agromyces albus str. VKM Ac-1800 2.3.1.2.20.1.1098 OTU 1 seq prokMSA_id:34321 AF195447.1 GC gram+; August collection clone kpa40f 2.3.1.2.20.1.1102 OTU 1 seq prokMSA_id:33383 AF388031.1 Microbacterium sp. str. 46 2.3.1.2.20.1.1106 OTU 1 seq prokMSA_id:67398 AJ456967.1 Gram-positive LIg-3 2.3.1.2.20.1.1124 OTU 1 seq prokMSA_id:39537 AB042081.1 Microbacterium sp. str. VKM Ac-2016 2.3.1.2.20.1.1132 OTU 1 seq prokMSA_id:73379 AJ306835.2 Gulosibacter molinativorax str. ON4 2.3.1.2.20.1.1135 OTU 1 seq prokMSA_id:66699 AJ459101.1 Rhodoglobus vestalii str. LV3 2.3.1.2.20.1.1165 OTU 4 seqs prokMSA_id:12208 X77442.1 Microbacterium imperiale prokMSA_id:12218 AB015562.1 deep-sea sediment clone BD4-12 prokMSA_id:79704 AF468442.1 Arctic sea ice ARK10190 prokMSA_id:79897 AF468441.1 Arctic sea ice ARK10186 2.3.1.2.20.1.1173 OTU 1 seq prokMSA_id:12290 X77440.1 "Brevibacterium helvolum" 2.3.1.2.20.1.1186 OTU 2 seqs prokMSA_id:82683 AF505514.1 Cryocola antiquus str. VKM 103PF prokMSA_id:82704 AF505513.1 Cryocola antiquus str. VKM Ac-2070 2.3.1.2.20.1.1197 OTU 8 seqs prokMSA_id:31778 AF157480.1 Frigoribacterium sp. str. 312 prokMSA_id:68759 AF479342.1 glacial ice isolate str. G200-C11 prokMSA_id:80323 AF468272.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH4-90 prokMSA_id:80677 AF468440.1 Arctic sea ice ARK10173 prokMSA_id:80754 AF468262.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-27 prokMSA_id:99354 AY439262.1 Frigoribacterium sp. GIC6 prokMSA_id:100453 AY439269.1 Rhodoglobus sp. GICR18 prokMSA_id:105783 AY571813.1 Frigoribacterium sp. 34/19 2.3.1.2.20.1.1221 OTU 3 seqs prokMSA_id:12255 AB004714.1 Microbacterium sp. str. IFO16062 prokMSA_id:12256 AB023369.1 Microbacterium sp. IFO16248 str. IFO 16248 IFO16248 prokMSA_id:12257 AB023370.1 Microbacterium sp. IFO16249 str. IFO 16249 IFO16249 2.3.1.2.20.1.1241 OTU 30 seqs prokMSA_id:12192 Y17228.1 Microbacterium arabinogalactanolyticum str. DSM 8611 prokMSA_id:12202 AB004717.1 Microbacterium keratanolyticum str. IFO13309T prokMSA_id:12204 Y17233.1 Microbacterium keratanolyticum str. DSM 8606 prokMSA_id:12209 AB007414.1 Microbacterium imperiale prokMSA_id:12210 AB004725.1 Microbacterium chocolatum str. IFO3758T prokMSA_id:12213 Y17229.1 Microbacterium aurum str. DSM 8600 prokMSA_id:12216 X77443.1 Microbacterium arborescens prokMSA_id:12217 AB007421.1 Microbacterium arborescens str. IFO 3750 prokMSA_id:12221 AB007418.1 Microbacterium aurum str. IFO 15204 prokMSA_id:12226 AB004721.1 Microbacterium terregens str. IFO12961T prokMSA_id:12227 Y17239.1 Microbacterium terregens str. DSM 20449 prokMSA_id:12228 AB004723.1 Microbacterium schleiferi str. IFO15075T prokMSA_id:12230 Y17237.1 Microbacterium schleiferi str. DSM 20489 prokMSA_id:21283 AB042080.1 Microbacterium sp. str. VKM Ac-2015 prokMSA_id:33980 AF403727.1 Actinobacterium isolate str. MPD-93 prokMSA_id:41920 AJ296094.1 Microbacterium sp. str. OS-6 prokMSA_id:42905 AB042092.1 Curtobacterium sp. str. VKM Ac-2057 prokMSA_id:47252 AF329727.1 Microbacterium sp. str. absalar prokMSA_id:54324 AF417868.1 Microbacterium sp. YSS/2001-1 prokMSA_id:72245 AF385527.1 swab advanced noma lesion clone AV005b prokMSA_id:86965 AY278889.1 Microbacterium sp. T2-22 prokMSA_id:100863 AJ576398.1 midgut homogenate Pachnoda ephippiata larva clone PeM48 prokMSA_id:101106 AY741721.1 Microbacterium sp. str. SKJH-22 prokMSA_id:103774 AY509224.1 Microbacterium arabinogalactanolyticum str. S8 prokMSA_id:108535 AJ853908.1 Microbacterium sp. S3-E prokMSA_id:108536 AJ853909.1 Microbacterium sp. US15 prokMSA_id:110193 AJ717362.1 Microbacterium sp. CV97 prokMSA_id:110550 AJ717355.1 Microbacterium phyllosphaerae AC13 prokMSA_id:111150 AJ717353.1 Microbacterium kitamiense CV88 prokMSA_id:111689 AJ244679.2 MM_3004 2.3.1.2.20.1.1264 OTU 1 seq prokMSA_id:21520 AJ318140.1 Waste-gas biofilter clone BIhi33 2.3.1.2.20.1.1278 OTU 22 seqs prokMSA_id:12260 X77435.1 Clavibacter michiganense prokMSA_id:12261 D84128.1 Clavibacter subsp. michiganensis str. JCM1370 (ATCC492) prokMSA_id:12263 X77434.1 Clavibacter michiganense prokMSA_id:12265 U09763.1 Clavibacter michiganense prokMSA_id:12266 U09761.1 Clavibacter michiganense prokMSA_id:12268 U09762.1 Clavibacter michiganense prokMSA_id:12269 D45059.1 Clavibacter michiganense prokMSA_id:12270 U09764.1 Clavibacter michiganense prokMSA_id:12271 U96182.1 Clavibacter michiganensis subsp. nebraskensis str. ATCC 27822 subsp. prokMSA_id:12272 L43096.1 Clavibacter michiganense prokMSA_id:12273 U30254.1 Clavibacter michiganense prokMSA_id:12275 D45051.1 Clavibacter michiganense prokMSA_id:19936 AJ310416.1 Clavibacter michiganensis str. P 250/01 prokMSA_id:37454 AF406677.1 Clavibacter michiganensis str. B7 prokMSA_id:39549 AJ310415.1 Clavibacter michiganensis str. P 202/10 prokMSA_id:45123 AB042095.1 Curtobacterium sp. str. VKM Ac-2060 prokMSA_id:66587 AF474328.1 Clavibacter michiganensis str. PD039 prokMSA_id:73009 AF479348.1 glacial ice isolate str. G50-PD1 prokMSA_id:73967 AF451847.1 Clavibacter michiganensis str. dO prokMSA_id:91182 AY336543.1 Clavibacter sp. str. pfB14 prokMSA_id:91265 AY336555.1 Clavibacter sp. str. pfB26 prokMSA_id:91959 AY336557.1 Clavibacter sp. str. pfB28 2.3.1.2.20.1.1333 OTU 1 seq prokMSA_id:21404 AJ251780.1 Brevibacterium equis str. CCUG 42136T 2.3.1.2.20.1.1345 OTU 5 seqs prokMSA_id:12163 D45063.1 Leucobacter komagatae str. JCM 9414 prokMSA_id:12164 AB012594.1 Leucobacter albus str. IAM 14851 prokMSA_id:42597 AB007419.1 Leucobacter komagatae str. IFO15245 prokMSA_id:102687 AJ746337.1 Leucobacter komagatae IFO15245T prokMSA_id:111988 AJ781047.1 Leucobacter aridicollis str. L9 2.3.1.2.20.1.1361 OTU 1 seq prokMSA_id:30568 AF389342.1 Agromyces aurantiacus str. YIM 21741 2.3.1.2.20.1.1376 OTU 12 seqs prokMSA_id:56496 AJ507461.1 freshwater isolate str. MWH-Mo2 prokMSA_id:59525 AJ507462.1 freshwater isolate str. MWH-Mo3 prokMSA_id:59856 AJ507464.2 freshwater isolate str. MWH-Wo1 prokMSA_id:59857 AJ507467.1 freshwater isolate str. MWH-Ta2 prokMSA_id:62712 AF507846.1 Mono Lake at depth 2 m station 6 July 2000 clone ML602J-51 prokMSA_id:79487 AF447768.1 actinobacterium clone ML320J-19 prokMSA_id:79920 AF445364.1 actinobacterium clone ML110J-7 prokMSA_id:80013 AF448168.1 actinobacterium clone ML110J-11 prokMSA_id:80234 AF448170.1 actinobacterium clone ML110M-5 prokMSA_id:80358 AF448177.1 actinobacterium clone ML320J-32 prokMSA_id:80474 AF448171.1 actinobacterium clone ML1218M-10 prokMSA_id:81025 AF448180.1 actinobacterium clone ML602M-15 2.3.1.2.20.1.1404 OTU 1 seq prokMSA_id:59851 AJ507468.1 freshwater isolate str. MWH-Ta3 2.3.1.2.20.1.1411 OTU 1 seq prokMSA_id:38522 AF224722.1 Subtercola boreus 2.3.1.2.20.1.1437 OTU 9 seqs prokMSA_id:16324 AF356010.1 enrichment hydrothermal waters clone BA4 prokMSA_id:17543 AF356023.1 hydrothermal waters clone S45 prokMSA_id:30944 AF356014.1 enrichment hydrothermal waters clone RO23 prokMSA_id:35723 AF356026.1 hydrothermal waters clone S56 prokMSA_id:95180 AJ575515.1 freshwater clone SV1-1 prokMSA_id:96596 AJ575517.1 freshwater clone SV1-7 prokMSA_id:97172 AJ575520.1 freshwater clone SV1-11 prokMSA_id:97372 AJ575521.1 freshwater clone SV1-12 prokMSA_id:98221 AJ575522.1 freshwater clone SV1-16 2.3.1.2.20.1.1447 OTU 6 seqs prokMSA_id:12179 X77449.1 Agromyces mediolanus str. DSM 20152 prokMSA_id:12183 D45052.1 Agromyces mediolanus prokMSA_id:12184 D45054.1 Agromyces mediolanus prokMSA_id:12185 D45056.1 Agromyces mediolanus prokMSA_id:12186 D45053.1 Agromyces mediolanus prokMSA_id:110423 AY851690.1 Agromyces sp. clone p6 2.3.1.2.20.1.1451 OTU 2 seqs prokMSA_id:49537 AJ297438.1 Cryobacterium aff. psychrophilum str. A1/C-aer/OI psychrophilum prokMSA_id:62238 AY124341.1 CS117 2.3.1.2.20.1.1456 OTU 7 seqs prokMSA_id:12278 X77438.1 Rathayibacter tritici prokMSA_id:12279 U96185.1 Rathayibacter tritici str. ATCC 11402 prokMSA_id:12287 D45062.1 Rathayibacter rathayi prokMSA_id:12288 X77439.1 Rathayibacter rathayi prokMSA_id:21685 AF159364.1 Rathayibacter caricis str. VKM Ac-1799 prokMSA_id:77324 AY167853.1 Rathayibacter tritici str. SAFR-009 prokMSA_id:85118 AY244990.1 cow rumen clone BS39 2.3.1.2.20.1.1460 OTU 1 seq prokMSA_id:12158 D45057.1 "Corynebacterium aquaticum" 2.3.1.2.20.1.1507 OTU 1 seq prokMSA_id:44928 AF390085.1 Microbacterium sp. str. Pla-1 2.3.1.2.20.1.1513 OTU 3 seqs prokMSA_id:27703 AF263563.1 Microbacterium gubbeenense str. LMG S-19263; NCIMB 30129 prokMSA_id:33272 AF263565.1 Microbacterium gubbeenense prokMSA_id:97664 AY395034.1 midgut host clone NAB30 2.3.1.2.20.1.1519 OTU 4 seqs prokMSA_id:37764 AF157478.1 Frigoribacterium sp. str. 227 prokMSA_id:43521 AF157479.1 Frigoribacterium sp. str. 301 prokMSA_id:45654 Y18807.1 Frigoribacterium faeni str. 801 prokMSA_id:99008 AY599739.1 fungal ascocarp isolate str. TB3-4-I 2.3.1.2.20.1.1522 OTU 1 seq prokMSA_id:16443 AJ289982.1 Germany: Lake Fuchskuhle north basin clone FukuN101 FukuN101 2.3.1.2.20.1.1548 OTU 1 seq prokMSA_id:12231 AB002637.1 deepest sea mud Mariana Trench clone 2.3.1.2.20.1.1549 OTU 10 seqs prokMSA_id:18263 AB042094.1 Okibacterium fritillariae str. VKM Ac-2059 prokMSA_id:41086 AB042097.1 Okibacterium fritillariae str. VKM ac-2062 prokMSA_id:41897 AF306834.1 Microbacterium sp. VA8728_00 prokMSA_id:93262 AY358012.1 actinobacterium str. iRIV12 prokMSA_id:93359 AY358011.1 actinobacterium str. iRIV11 prokMSA_id:93663 AY358003.1 actinobacterium str. iRIII11 prokMSA_id:93905 AY358019.1 actinobacterium str. iRV16 prokMSA_id:94101 AY364017.1 actinobacterium iEI7 prokMSA_id:94153 AY357998.1 actinobacterium str. iRII14 prokMSA_id:94186 AY357999.1 actinobacterium str. iRII17 2.3.1.2.20.1.1550 OTU 1 seq prokMSA_id:12160 AF050573.1 contaminated aquifer clone WCHB1-08 2.3.1.2.20.1.1570 OTU 1 seq prokMSA_id:12165 D17751.1 Leucobacter komagatae str. IFO15245T 2.3.1.2.20.1.1574 OTU 1 seq prokMSA_id:12168 AF170739.1 Agrococcus sp. str. QSSC2-2 2.3.1.2.20.1.1591 OTU 1 seq prokMSA_id:12246 D21340.1 Mycobacterium aurum 2.3.1.2.20.1.1599 OTU 1 seq prokMSA_id:12293 AB012591.1 Zimmermannella faecalis str. IFO 15706 2.3.1.2.20.1.1624 OTU 1 seq prokMSA_id:12178 D45060.1 Agromyces subsp. cerinus str. JCM9083 2.3.1.2.20.1.1625 OTU 1 seq prokMSA_id:29862 AF369644.1 Microbacterium sp. str. AB005 2.3.1.2.20.1.1640 OTU 1 seq prokMSA_id:12254 AB004713.1 Microbacterium sp. str. IFO16060 2.3.1.2.20.1.1655 OTU 1 seq prokMSA_id:50557 AF224723.1 Subtercola frigoramans 2.3.1.2.20.1.1657 OTU 1 seq prokMSA_id:12180 AB023356.1 Agromyces luteolus str. IFO 16235 2.3.1.2.20.1.1658 OTU 1 seq prokMSA_id:12181 AB023359.1 Agromyces bracchium str. IFO 16238 2.3.1.2.20.1.1667 OTU 11 seqs prokMSA_id:12212 AB007415.1 Microbacterium lacticum prokMSA_id:12219 D21343.1 Microbacterium lacticum prokMSA_id:19310 AF306542.1 Microbacterium sp. str. I33 prokMSA_id:20016 AF423215.1 soil clone 1245-2 prokMSA_id:25944 AF260714.1 Microbacterium sp. str. S10 prokMSA_id:26827 AY038630.1 lacustrine subsurface sediment clone GL178.9 prokMSA_id:27593 AJ295433.1 rape rhizosphere tsb033 prokMSA_id:34587 AY038632.1 lacustrine subsurface sediment clone GL184.20 prokMSA_id:38519 AB042084.1 Microbacterium sp. str. VKM Ac-2050 prokMSA_id:72348 AY144450.1 Microbacterium sp. str. 170702P4 prokMSA_id:99522 AB186855.1 polychlorinated dioxin dechlorinating microcosm clone TSAa23 2.3.1.2.20.1.1692 OTU 2 seqs prokMSA_id:68771 AF479329.1 glacial ice isolate str. G500K-10 prokMSA_id:80180 AF468437.1 Arctic sea ice ARK10030 2.3.1.2.20.1.1705 OTU 2 seqs prokMSA_id:32010 AF188176.1 culturable Pfiesteria-complex dinflagellate (CCMP 1827) isolate str. KE27CII-4 prokMSA_id:80401 AY192285.1 Rocky Mountain alpine soil clone W1-4F 2.3.1.2.20.1.1714 OTU 2 seqs prokMSA_id:12292 AB012590.1 Zimmermannella alba str. IFO 15616 prokMSA_id:12295 AB012593.1 strain:IFO15702 isolate str. IFO15702 2.3.1.2.20.1.1758 OTU 1 seq prokMSA_id:68742 AF479358.1 glacial ice isolate str. SB12K-2-1 2.3.1.2.20.1.1772 OTU 1 seq prokMSA_id:83306 AJ440992.1 lake microbial mat isolate str. R-8287 2.3.1.2.20.1.1779 OTU 5 seqs prokMSA_id:23056 AB042076.1 Microbacterium sp. str. VKM Ac-2011 prokMSA_id:26967 AB042083.1 Microbacterium sp. str. VKM Ac-2048 prokMSA_id:50641 AB042079.1 Microbacterium sp. str. VKM Ac-2014 prokMSA_id:52309 AB042077.1 Microbacterium sp. str. VKM Ac-2012 prokMSA_id:54001 AB042078.1 Microbacterium sp. str. VKM Ac-2013 2.3.1.2.20.1.1804 OTU 40 seqs prokMSA_id:12211 X77441.1 Microbacterium lacticum prokMSA_id:12215 D21344.1 Microbacterium laevaniformans prokMSA_id:12220 AB007416.1 Microbacterium laevaniformans prokMSA_id:12222 AB004727.1 Microbacterium sp. str. IFO15708 prokMSA_id:12223 AB021324.1 strain isolate str. rJ6 prokMSA_id:12224 AB007417.1 Microbacterium dextranolyticum prokMSA_id:12225 AB004728.1 Microbacterium sp. str. IFO15709 prokMSA_id:12229 AB008512.1 Gram-positive isolate str. 13-2 prokMSA_id:12232 AB004716.1 Microbacterium flavescens str. IFO15039T prokMSA_id:12233 X95482.1 Microbacterium sp. str. gh942 prokMSA_id:12234 Y17230.1 Microbacterium dextranolyticum str. DSM 8607 prokMSA_id:12235 Y17234.1 Microbacterium laevaniformans str. DSM 20140 prokMSA_id:12244 AB002638.1 deepest sea mud Mariana Trench clone prokMSA_id:12247 D21341.1 Microbacterium dextranolyticum prokMSA_id:12250 AB004724.1 Microbacterium ketoreductum str. IFO14548T prokMSA_id:12251 AB004720.1 Microbacterium terrae str. IFO15300T prokMSA_id:12252 Y17232.1 Microbacterium flavescens str. DSM 20643 prokMSA_id:12253 Y17238.1 Microbacterium terrae str. DSM 8610 prokMSA_id:12258 Y14699.1 Microbacterium resistens str. DMMZ 1710 prokMSA_id:18236 AB032250.1 isolate str. RSB-1 prokMSA_id:19202 AF319539.1 Microbacterium nematophilum str. CBX102 prokMSA_id:24767 AF287752.1 Microbacterium sp. oral strain str. C24KA prokMSA_id:26169 AF349766.2 reductive TCE-dehalogenating enrichment clone TCE16 prokMSA_id:29423 AJ251194.1 Microbacterium sp. str. MAS133 prokMSA_id:32634 Y17240.1 Microbacterium trichotecenolyticum str. DSM 8608 prokMSA_id:42242 AF394172.1 simulated blackwater bioreactor isolate str. BW7 bacterium prokMSA_id:64365 AY082801.1 Microbacterium sp. str. 44574 prokMSA_id:66592 AF474327.1 Microbacterium testaceum str. SE034 prokMSA_id:68740 AF479361.1 glacial ice isolate str. SB12K-2-3 prokMSA_id:71669 AF535159.1 Microbacterium laevaniformans str. LA prokMSA_id:72814 AJ309929.1 Microbacterium aerolatum str. V-73 prokMSA_id:77157 AJ534677.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN4 prokMSA_id:78414 AY177373.2 phenanthrene-degrading isolate str. 78 prokMSA_id:83680 AY262001.1 Microbacterium kitamiense str. OB-2 prokMSA_id:86183 AY244784.1 Microbacterium resistens str. 2002-59119 prokMSA_id:88097 AY277553.1 Microbacterium resistens str. AGP4-3 prokMSA_id:99919 AJ576392.1 midgut homogenate Pachnoda ephippiata larva clone PeM28 prokMSA_id:100081 AJ576393.1 midgut homogenate Pachnoda ephippiata larva clone PeM30 prokMSA_id:104480 AY635868.1 Microbacterium sp. str. BM-25 prokMSA_id:106857 AJ576426.1 midgut homogenate Pachnoda ephippiata larva clone PeM73 2.3.1.2.20.1.1817 OTU 7 seqs prokMSA_id:12205 AB004719.1 Microbacterium saperdae str. IFO15038T prokMSA_id:18883 AB042096.1 Curtobacterium sp. str. VKM Ac-2061 prokMSA_id:48968 AY017057.1 Microbacterium sp. str. A8-2 prokMSA_id:59548 AF538744.1 municipal wastewater treatment bioreactor isolate str. CAGY-3 prokMSA_id:61996 AJ244681.2 Corynebacterium cf. aquaticum str. V4.BO.26 = MM_2933 aquaticum prokMSA_id:61998 AJ244677.2 Microbacterium sp. str. V4.BP.11 = MM_2351 V4.BP.11 prokMSA_id:77572 AY167852.1 Microbacterium phyllosphaerae str. SAFR-012 2.3.1.2.20.1.1871 OTU 5 seqs prokMSA_id:12190 Y17231.1 Microbacterium esteraromaticum str. DSM 8609 prokMSA_id:65230 AB070467.1 Microbacterium sp. str. YK18 prokMSA_id:103343 AY509221.1 Microbacterium oxydans str. S155 prokMSA_id:103915 AY509225.1 Microbacterium arabinogalactanolyticum str. S27n prokMSA_id:104065 AY509226.1 Microbacterium arabinogalactanolyticum str. S116 2.3.1.2.20.1.1899 OTU 1 seq prokMSA_id:12167 X92492.1 Agrococcus jenensis 2.3.1.2.20.1.1909 OTU 1 seq prokMSA_id:12280 AB008510.1 Gram-positive isolate str. 12-8 2.3.1.2.20.1.1912 OTU 2 seqs prokMSA_id:12175 AB023357.1 Agromyces rhizospherae str. IFO 16236 prokMSA_id:12176 AB023358.1 Agromyces rhizospherae str. IFO 16237 2.3.1.2.20.1.1921 OTU 1 seq prokMSA_id:61927 AJ292036.1 Firmicutes isolate str. d8 2.3.1.2.20.1.1936 OTU 2 seqs prokMSA_id:12285 AF170755.1 Corynebacterium-like isolate str. QSSC9-20 QSSC9-20 prokMSA_id:25558 AF050574.1 contaminated aquifer clone WCHB1-18 2.3.1.2.20.1.1946 OTU 3 seqs prokMSA_id:85042 AY273209.1 Curtobacterium fangii str. CGMCC 1.2000 prokMSA_id:101628 AJ310417.1 Plantibacter flavus str. P 297/02 prokMSA_id:103006 AB177868.2 Plantibacter aurantiacus str. IAM 18417 2.3.1.2.20.1.1965 OTU 1 seq prokMSA_id:80750 AF468439.1 Arctic sea ice ARK10165 2.3.1.2.20.1.1969 OTU 1 seq prokMSA_id:12193 AF154098.1 hydrocarbon seep clone BPC090 2.3.1.2.20.1.1974 OTU 1 seq prokMSA_id:47210 AB042090.1 Curtobacterium sp. str. VKM Ac-2052 2.3.1.2.20.1.2018 OTU 20 seqs prokMSA_id:12298 X77437.1 Curtobacterium luteum prokMSA_id:12299 X77436.1 Curtobacterium citreum prokMSA_id:17229 AB046363.1 Curtobacterium albidum str. IFO 15078T prokMSA_id:27533 AB042091.1 Curtobacterium sp. str. VKM Ac-2056 prokMSA_id:30962 AB042089.1 Curtobacterium sp. str. VKM Ac-1811 prokMSA_id:35312 AB042086.1 Curtobacterium sp. str. VKM Ac-1376 prokMSA_id:35440 AJ310413.1 Curtobacterium herbarum str. P 420/07 prokMSA_id:51851 AB042087.1 Curtobacterium sp. str. VKM Ac-1387 prokMSA_id:59541 AF538747.1 municipal wastewater treatment bioreactor isolate str. CAGY8 prokMSA_id:71860 AB046364.1 Curtobacterium sp. str. IFO 12674T prokMSA_id:74824 AB042088.1 Curtobacterium sp. str. VKM Ac-1809 prokMSA_id:77377 AY167854.1 Curtobacterium flaccumfaciens str. SAFR-008 prokMSA_id:83268 AY273208.1 Curtobacterium flaccumfaciens pv. beticola str. T30 pv. prokMSA_id:84851 AY273210.1 Curtobacterium flaccumfaciens pv. basellae str. BR-10 pv. prokMSA_id:100304 AJ786344.1 Curtobacterium sp. BC2 prokMSA_id:106501 AJ784400.1 Curtobacterium pusillum str. DSM 20527 prokMSA_id:107255 AB114608.1 rice plant clone ER-1 prokMSA_id:110656 AY688361.1 Curtobacterium sp. 3430 prokMSA_id:111076 AY688357.1 Curtobacterium sp. 1594 prokMSA_id:111144 AY864656.1 Curtobacterium sp. str. SA7 2.3.1.2.20.1.2024 OTU 1 seq prokMSA_id:12187 X77446.1 Aureobacterium barkeri 2.3.1.2.20.1.2044 OTU 1 seq prokMSA_id:46295 AJ297441.1 Frigoribacterium aff. faeni str. -1/C-/E 2.3.1.2.21 Micrococcaceae 131 seqs 2.3.1.2.21.1 sf_1 131 seqs 2.3.1.2.21.1.1099 OTU 1 seq prokMSA_id:12457 U85893.1 Arthrobacter sp. str. MB90 2.3.1.2.21.1.1133 OTU 1 seq prokMSA_id:28143 AF180950.1 Renibacterium salmoninarum str. ATCC33209 2.3.1.2.21.1.1156 OTU 1 seq prokMSA_id:12397 AF170748.1 Arthrobacter sp. str. QSSC8-13 2.3.1.2.21.1.1157 OTU 1 seq prokMSA_id:12398 AB024412.1 Arthrobacter sp. str. SN16A 2.3.1.2.21.1.1212 OTU 7 seqs prokMSA_id:12496 Y13025.1 Actinomyces sp. CCUG 25688 prokMSA_id:33563 AJ131122.1 Rothia sp. str. CCUG 25688 prokMSA_id:50851 AF332382.1 Arthrobacter sp. B10 prokMSA_id:58299 AF543280.1 Rothia sp. str. ChDC B202 prokMSA_id:58301 AF543279.1 Rothia sp. str. ChDC B201 prokMSA_id:59468 AB071952.1 Rothia aeria str. GTC 867 prokMSA_id:103830 AY538697.1 Rothia sp. str. Smarlab 3302411 2.3.1.2.21.1.1213 OTU 5 seqs prokMSA_id:12499 X87756.1 Kocuria roseus prokMSA_id:12502 Y11330.1 Kocuria rosea str. ATCC 187T prokMSA_id:35206 AJ278868.1 Kocuria polaris str. CMS 76or prokMSA_id:77664 AB098572.1 Arthrobacter sp. str. TUT1004 prokMSA_id:78055 AB098571.1 Arthrobacter sp. str. TUT1003 2.3.1.2.21.1.1263 OTU 4 seqs prokMSA_id:12394 AF099202.1 Arthrobacter davidanieli str. RSX II prokMSA_id:44320 AB017541.1 Arthrobacter sp. str. R-II-1 prokMSA_id:49703 AB017539.1 Arthrobacter sp. str. H-I-2 prokMSA_id:59471 AB071950.1 Arthrobacter russicus str. GTC 863 2.3.1.2.21.1.1266 OTU 6 seqs prokMSA_id:12417 AF134179.1 Arthrobacter psychrolactophilus prokMSA_id:12418 AF134180.1 Arthrobacter psychrolactophilus str. D10 prokMSA_id:12419 AF134181.1 Arthrobacter psychrolactophilus str. D2 prokMSA_id:12421 AF134183.1 Arthrobacter psychrolactophilus str. RG1 prokMSA_id:71392 AF531478.1 acidic soil isolate str. IS13 prokMSA_id:72155 AF531475.1 acidic soil isolate str. IS4 2.3.1.2.21.1.1324 OTU 1 seq prokMSA_id:68776 AF479325.1 glacial ice isolate str. CanDirty1 2.3.1.2.21.1.1329 OTU 1 seq prokMSA_id:72934 AJ344143.1 Citricoccus muralis str. 4-0 2.3.1.2.21.1.1442 OTU 3 seqs prokMSA_id:27944 AJ316579.1 Kocuria kristinae prokMSA_id:43126 AF323746.1 Kocuria kristinae BK3721_00 prokMSA_id:65497 AF501368.1 Kocuria kristinae str. HAMBI2407 N1a1d 2.3.1.2.21.1.1452 OTU 1 seq prokMSA_id:42157 AF194538.1 Methylomicrobium sp. str. 6G 2.3.1.2.21.1.1457 OTU 2 seqs prokMSA_id:61986 AJ244665.2 Micrococcus sp. str. V4.MO.20 = MM_2321 prokMSA_id:80644 AY188937.1 Micrococcus sp. P_wp0222 str. p_wp0222 2.3.1.2.21.1.1479 OTU 1 seq prokMSA_id:21109 AJ131121.1 Rothia nasimurium str. CCUG 35957 2.3.1.2.21.1.1494 OTU 17 seqs prokMSA_id:12433 X80748.1 Arthrobacter agilis prokMSA_id:12436 AF041789.1 Arthrobacter sp. str. S23H2 prokMSA_id:12437 AB002635.1 deepest sea mud Mariana Trench clone prokMSA_id:12439 AF134184.1 Arthrobacter agilis str. LV7 prokMSA_id:18132 AF197057.1 Arthrobacter sp. 'SMCC ZAT277' str. SMCC ZAT277 'SMCC prokMSA_id:19576 AF197049.1 Arthrobacter sp. 'SMCC ZAT031' str. SMCC ZAT031 'SMCC prokMSA_id:60440 AY131225.1 Arthrobacter sp. str. Fa21 prokMSA_id:61835 AF529327.1 PCE-contaminated site clone CLi20 prokMSA_id:65387 AF511518.1 Arthrobacter agilis VincaOsa prokMSA_id:68747 AF479354.1 glacial ice isolate str. G50-TB7 prokMSA_id:70897 AJ315069.1 Arthrobacter sp. LMG 19501 prokMSA_id:71476 AF218242.1 Arthrobacter sp prokMSA_id:72673 AF479341.1 glacial ice isolate str. G200-C1 prokMSA_id:72942 AJ244667.1 Arthrobacter-like sp. str. V4.BS.11 = MM_2430 V4.BS.11 prokMSA_id:74109 AJ315071.1 Arthrobacter sp. LMG 19503 prokMSA_id:85235 AY250864.1 lichen-dominated Antarctic cryptoendolithic community clone FBP211 sp. prokMSA_id:85512 AJ440978.1 lake microbial mat isolate str. R-7549 2.3.1.2.21.1.1529 OTU 1 seq prokMSA_id:78681 AB094467.1 Kocuria sp. str. 2216.35.31 2.3.1.2.21.1.1554 OTU 5 seqs prokMSA_id:12500 AF196342.1 Micrococcus sp. str. SMCC ZAT351 prokMSA_id:12501 AF196343.1 Micrococcus sp. str. SMCC ZAT352 prokMSA_id:12504 Y16263.1 Kocuria palustris str. TAGA27 (DSM 11925 ) prokMSA_id:35999 AF336354.1 Germany: Wulfbach river resurgence Southern Germany isolate str. Wuba45 Wuba45 prokMSA_id:108635 AY745853.1 Kocuria sp. str. JL-80 2.3.1.2.21.1.1557 OTU 5 seqs prokMSA_id:12407 X83408.1 Arthrobacter oxydans prokMSA_id:43708 AB039736.1 Arthrobacter sp. str. CAB1 prokMSA_id:46937 AF330692.1 Arthrobacter sp. YH-2001 prokMSA_id:49669 AF197041.1 Arthrobacter sp. 'SMCC G993' str. SMCC G993 'SMCC prokMSA_id:68760 AF479340.1 glacial ice isolate str. Guliya200-A1 2.3.1.2.21.1.1561 OTU 1 seq prokMSA_id:48874 AJ298940.1 Micrococcus lylae str. d10 2.3.1.2.21.1.1573 OTU 5 seqs prokMSA_id:12456 X80745.1 Arthrobacter protophormiae prokMSA_id:12474 X80739.1 Arthrobacter nicotianae prokMSA_id:17863 AJ251417.1 Arthrobacter nicotianae str. DSM 20579 prokMSA_id:45136 AJ315492.1 Arthrobacter nicotianae str. SB42 prokMSA_id:54177 AF200218.1 Psychrophilic marine complete and -23S intergenic spacer region isolate str. PS32 bacterium 2.3.1.2.21.1.1579 OTU 1 seq prokMSA_id:49877 AF441731.1 Arthrobacter sp. str. Kaza-36 2.3.1.2.21.1.1582 OTU 1 seq prokMSA_id:44226 AY053487.1 gas hydrate clone AT425_EubD11 2.3.1.2.21.1.1593 OTU 19 seqs prokMSA_id:12395 M23411.1 Arthrobacter globiformis prokMSA_id:12405 X80740.1 Arthrobacter pascens prokMSA_id:12427 X80736.1 Arthrobacter globiformis prokMSA_id:16350 AF197025.1 Arthrobacter sp. 'SMCC G960' str. SMCC G960 'SMCC prokMSA_id:17243 AF197029.1 Arthrobacter sp. 'SMCC G964' str. SMCC G964 'SMCC prokMSA_id:27187 AF235091.1 Arthrobacter sulfonivorans str. ALL; ATCC BAA-112; DSM 14002 prokMSA_id:28569 AF197040.1 Arthrobacter sp. 'SMCC G991' str. SMCC G991 'SMCC prokMSA_id:31087 AF423303.1 soil clone 987-1 prokMSA_id:39179 AF197053.1 Arthrobacter sp. 'SMCC ZAT200' str. SMCC ZAT200 'SMCC prokMSA_id:39874 AF423301.1 soil clone 960-2 prokMSA_id:44124 AB070602.1 Arthrobacter sp. JCM 1339 str. JCM1339 prokMSA_id:49314 AF388034.1 Arthrobacter sp. str. 53 prokMSA_id:68761 AF479339.1 glacial ice isolate str. CanDirty7 prokMSA_id:77488 AY167845.1 Arthrobacter chlorophenolicus str. SAFR-044 prokMSA_id:77502 AY167856.1 Arthrobacter globiformis str. SAFR-004 prokMSA_id:78280 AB098573.1 Arthrobacter globiformis str. TUT1005 prokMSA_id:78801 AY177353.2 Arthrobacter sp. str. I4 prokMSA_id:78941 AY176765.1 Arthrobacter sp. str. HJ4 prokMSA_id:78996 AY177360.2 Arthrobacter sp. str. M4 2.3.1.2.21.1.1604 OTU 1 seq prokMSA_id:24670 AJ344225.1 Kocuria rhizophila str. RNF1 2.3.1.2.21.1.1610 OTU 1 seq prokMSA_id:12415 X86595.1 Acinetobacter sp. 2.3.1.2.21.1.1620 OTU 1 seq prokMSA_id:12479 D88211.1 Arthrobacter sp. str. gifu12498 2.3.1.2.21.1.1622 OTU 1 seq prokMSA_id:19877 AY030341.1 Kocuria rhizophila str. KL-057 2.3.1.2.21.1.1628 OTU 1 seq prokMSA_id:12434 U85895.1 Arthrobacter sp. str. IC044 2.3.1.2.21.1.1673 OTU 2 seqs prokMSA_id:23405 X92155.1 Crater Lake isolate 13C1 prokMSA_id:44941 X92154.1 Lake Elmenteita isolate WE2 2.3.1.2.21.1.1685 OTU 1 seq prokMSA_id:72484 AJ298578.1 masonry discolouration clone Hb7-K5 2.3.1.2.21.1.1686 OTU 1 seq prokMSA_id:85092 AY228479.1 Yania halotolerans str. YIM 70085 2.3.1.2.21.1.1688 OTU 1 seq prokMSA_id:12485 X80747.1 Nesterenkonia halobia 2.3.1.2.21.1.1691 OTU 1 seq prokMSA_id:12486 AF140001.1 Mono Lake strain isolate str. ML-162 2.3.1.2.21.1.1724 OTU 2 seqs prokMSA_id:12497 X87758.1 "Micrococcus mucilaginosus" prokMSA_id:12498 X95483.1 Rothia mucilaginosa str. DSM 2.3.1.2.21.1.1751 OTU 1 seq prokMSA_id:12490 X80746.1 Arthrobacter atrocyaneus 2.3.1.2.21.1.1753 OTU 1 seq prokMSA_id:12491 X80738.1 Arthrobacter crystallopoietes 2.3.1.2.21.1.1810 OTU 1 seq prokMSA_id:37075 AY043359.1 Rothia amarae str. J18; AS 4.1721; JCM 11375 2.3.1.2.21.1.1889 OTU 1 seq prokMSA_id:79015 AB094464.1 Citricoccus sp. str. 2216.25.22 2.3.1.2.21.1.1966 OTU 1 seq prokMSA_id:59890 AY133106.1 TCE-contaminated site clone ccspost2208 2.3.1.2.21.1.2019 OTU 14 seqs prokMSA_id:12465 Y15857.1 sludge clone Y15857 prokMSA_id:12466 AF057289.1 Micrococcus luteus str. HN2-11 prokMSA_id:12467 AB023371.1 Micrococcus luteus str. IFO 16250 prokMSA_id:12468 X86608.1 Micrococcus sp. str. 1F-15 prokMSA_id:12469 X86609.1 Micrococcus sp. str. AC-47 prokMSA_id:22419 AF218240.1 Micrococcus sp prokMSA_id:29883 AJ313024.1 Micrococcus sp. MN 8.1d.1c prokMSA_id:42695 AJ295375.1 rape rhizosphere cse077 prokMSA_id:68736 AF479368.1 glacial ice isolate str. SB19K-1 prokMSA_id:72015 AF394169.1 simulated blackwater bioreactor isolate str. BW4 bacterium prokMSA_id:72261 AJ276811.1 Micrococcus sp. str. LMG-19421 prokMSA_id:77387 AY167858.1 Micrococcus luteus str. SAFR-002 prokMSA_id:78140 AJ536198.1 Micrococcus luteus str. DSM 20030 prokMSA_id:83602 AJ441006.1 lake microbial mat isolate str. R-9183 2.3.1.2.21.1.2020 OTU 1 seq prokMSA_id:58300 AF543278.1 Rothia dentocariosa str. ChDC B200 2.3.1.2.21.1.2036 OTU 1 seq prokMSA_id:12447 AJ243421.1 Arthrobacter albus CF-43 2.3.1.2.21.1.2063 OTU 7 seqs prokMSA_id:12495 M59055.1 Rothia dentocariosa prokMSA_id:58293 AF543284.1 Rothia dentocariosa str. ChDC OS32 prokMSA_id:58302 AF543277.1 Rothia dentocariosa str. ChDC B199 prokMSA_id:58305 AF543276.1 Rothia dentocariosa str. ChDC B198 prokMSA_id:105840 AY594189.1 Rothia dentocariosa str. Inje L1 prokMSA_id:107536 AY546095.1 Rothia dentocariosa str. ATCC BAA-907; CCUG 48652 CDC# C5660 prokMSA_id:109858 AJ717364.1 Rothia dentocariosa CV54 2.3.1.2.22 Micromonosporaceae 214 seqs 2.3.1.2.22.1 sf_1 214 seqs 2.3.1.2.22.1.1120 OTU 16 seqs prokMSA_id:19482 AB048213.1 Actinoplanes digitatis str. JCM 3060T prokMSA_id:23936 AB037004.1 Actinoplanes humidus str. IFO 14915T prokMSA_id:24528 AB037000.1 Actinoplanes digitatis str. IFO 12512T prokMSA_id:27800 AJ277586.1 Actinoplanes violaceus str. IMSNU 22136 prokMSA_id:39010 AB036996.1 Actinoplanes consettensis str. IFO 14913T prokMSA_id:41400 AB037008.1 Actinoplanes missouriensis str. IFO 13243T prokMSA_id:49242 AB047498.1 Actinoplanes nipponensis str. IFO 14063 prokMSA_id:51111 AB048214.1 Actinoplanes consettensis str. JCM 7624T prokMSA_id:51864 AB047515.1 Actinoplanes violaceus str. IFO 14458T prokMSA_id:64357 AY113685.1 Actinoplanes sp. str. YM-3 prokMSA_id:83420 AJ488564.1 Actinoplanes sp. str. 20 prokMSA_id:84068 AJ488563.1 Actinoplanes sp. str. 19 prokMSA_id:84925 AJ488566.1 Actinoplanes sp. str. 46 prokMSA_id:85492 AJ488565.1 Actinoplanes sp. str. 159 prokMSA_id:93220 AY360149.1 Verrucosispora sp. str. e37 prokMSA_id:111070 AJ871310.1 Actinoplanes nipponensis CP155-1 2.3.1.2.22.1.1159 OTU 87 seqs prokMSA_id:12840 Y15523.1 Verrucosispora gifhornensis HR1-2 prokMSA_id:12841 X92613.1 Micromonospora chalcea prokMSA_id:12842 X92603.1 "Micromonospora peucetica" prokMSA_id:12843 X92611.1 Micromonospora purpureochromogenes prokMSA_id:12844 X92602.1 "Micromonospora narashino" prokMSA_id:12845 X92616.1 "Micromonospora brunnescens" prokMSA_id:12847 X92615.1 "Micromonospora globosa" prokMSA_id:12848 X92601.1 Micromonospora halophytica prokMSA_id:12849 X92628.1 Micromonospora chersinia prokMSA_id:12850 X92617.1 "Micromonospora citrea" prokMSA_id:12851 X92625.1 "Micromonospora echinobrunnea" prokMSA_id:12852 X92598.1 Micromonospora coerulea prokMSA_id:12853 X92607.1 Micromonospora echinospora prokMSA_id:12854 X92620.1 "Micromonospora fulviviridis" prokMSA_id:12855 X92604.1 Micromonospora aurantiaca prokMSA_id:12856 AJ245712.1 Micromonospora aurantiaca str. W2b prokMSA_id:12857 X92627.1 "Micromonospora fulvopurpureus" prokMSA_id:12858 X92600.1 "Micromonospora globosa" prokMSA_id:12859 X92622.1 "Micromonospora lacustris" prokMSA_id:12860 X92594.1 Micromonospora chalcea prokMSA_id:12862 D85489.1 Micromonospora chalcea str. IFO12135 prokMSA_id:12863 U58531.1 Micromonospora chalcea str. ATCC12452 prokMSA_id:12864 X92605.1 Micromonospora brunnea prokMSA_id:12865 X92631.1 Micromonospora rosaria prokMSA_id:12866 X92612.1 Micromonospora rhodorangea prokMSA_id:12867 X92610.1 Micromonospora inositola prokMSA_id:12868 X92609.1 Micromonospora chalcea prokMSA_id:12870 X92597.1 Micromonospora echinospora prokMSA_id:12871 X92624.1 "Micromonospora sagamiensis" prokMSA_id:12872 X92618.1 "Micromonospora echinoaurantiaca" prokMSA_id:12873 X92629.1 "Micromonospora inyoensis" prokMSA_id:12874 X92595.1 Micromonospora purpurea prokMSA_id:12875 X92596.1 "Micromonospora melanospora" prokMSA_id:12876 L11306.1 Frankia sp. G48 prokMSA_id:12877 X92608.1 Micromonospora echinospora prokMSA_id:12878 X92623.1 "Micromonospora viridifaciens" prokMSA_id:12879 X92599.1 Micromonospora chalcea prokMSA_id:12880 AF068056.1 Micromonospora sp. str. Y10 prokMSA_id:12883 X92621.1 "Micromonospora floridensis" prokMSA_id:12884 X87321.1 Actinomycetaceae SR 53 prokMSA_id:12885 X92606.1 Micromonospora carbonacea prokMSA_id:22701 AJ277569.1 Actinoplanes ferrugineus str. IMSNU 22125T prokMSA_id:23551 AB036998.1 Actinoplanes deccanensis str. IFO 13994T prokMSA_id:30667 AB048221.1 Actinoplanes ferrugineus str. JCM 3277T prokMSA_id:41171 AB037002.1 Actinoplanes ferrugineus str. IFO 15555T prokMSA_id:42214 AF367587.1 Micromonospora sp. str. 0138 prokMSA_id:43093 AJ277568.1 Actinoplanes durhamensis str. IMSNU 22124T prokMSA_id:44122 AJ277565.1 Actinoplanes deccanensis str. IMSNU 20026T prokMSA_id:44843 AF152109.1 Micromonospora matsumotoense str. IMSNU 22003T prokMSA_id:51187 AB048215.1 Actinoplanes durhamensis str. JCM 7625T prokMSA_id:52270 AJ277571.2 Actinoplanes humidus str. IMSNU 20031T prokMSA_id:52957 AB037001.1 Actinoplanes durhamensis str. IFO 14914T prokMSA_id:56010 AY040624.1 Micromonospora sp. str. CNH512 prokMSA_id:59319 AY040625.1 Micromonospora sp. str. CNH394 prokMSA_id:68757 AF479344.1 glacial ice isolate str. G200-C39 prokMSA_id:78090 AJ294715.1 Asanoa ishikariensis str. IMSNU 22004 prokMSA_id:82514 AJ560635.1 Micromonospora endolithica str. AA459 = DSM 44398 prokMSA_id:82848 AY221487.1 Micromonospora sp. str. N0075 prokMSA_id:83827 AY221503.1 Micromonospora sp. str. N0179 prokMSA_id:83918 AY221484.1 Micromonospora sp. str. N0072 prokMSA_id:84504 AY221486.1 Micromonospora sp. str. N0074 prokMSA_id:84757 AY221493.1 Micromonospora sp. str. N0152 prokMSA_id:84817 AY221489.1 Micromonospora sp. str. N0088 prokMSA_id:85111 AY221501.1 Micromonospora sp. str. N0163 prokMSA_id:85320 AY221496.1 Micromonospora sp. N0156 str. No156 prokMSA_id:85587 AY221490.1 Micromonospora sp. str. N0093 prokMSA_id:85915 AY221502.1 Micromonospora sp. str. N0168 prokMSA_id:88326 AY295799.1 Micromonospora sp. str. 40010 prokMSA_id:93232 AY360151.1 Micromonospora sp. str. e3 prokMSA_id:93360 AY360159.1 Micromonospora sp. str. e32 prokMSA_id:93720 AY360150.1 Verrucosispora sp. str. e80 prokMSA_id:94058 AY360152.1 Micromonospora sp. str. e4 prokMSA_id:100836 AY221488.1 Micromonospora sp. str. N0087 prokMSA_id:102454 AJ626950.1 Micromonospora sp. WA201 prokMSA_id:108242 AB193561.1 Micromonospora sp. str. KM1-9 prokMSA_id:108278 AB193565.1 Micromonospora sp. str. TT2-4 prokMSA_id:108668 AY765354.1 Micromonospora hermanusense str. MMS6 prokMSA_id:108669 AY765353.1 Micromonospora lacunae str. MMS4 prokMSA_id:109569 AJ783985.1 Micromonospora sp. str. lupac 3B prokMSA_id:109872 AJ783995.1 Micromonospora sp. str. lupac 13 prokMSA_id:110647 AJ783990.1 Micromonospora sp. str. lupac 06 prokMSA_id:110860 AB196710.1 Micromonospora chaiyaphumensis str. MC5-1 prokMSA_id:111029 AB196715.1 Micromonospora krabiensis str. MA-1 prokMSA_id:111090 AJ784009.1 Micromonospora sp. str. NAR02 prokMSA_id:111233 AB107232.2 Micromonospora sp. str. LK3-4 prokMSA_id:111245 AJ784008.1 Micromonospora sp. str. NAR01 prokMSA_id:114168 AY921991.1 farm soil adjacent to silage storage bunker clone AKYG1815 2.3.1.2.22.1.1219 OTU 1 seq prokMSA_id:12902 X92630.1 Dactylosporangium thailandense 2.3.1.2.22.1.1285 OTU 2 seqs prokMSA_id:12890 X93200.1 Catellatospora tsunoense str. DSM 44101 prokMSA_id:42584 AF152110.1 Catellatospora tsunoense str. IMSNU 22005T 2.3.1.2.22.1.1316 OTU 3 seqs prokMSA_id:38986 AB037003.1 Actinoplanes globisporus str. IFO 13912T prokMSA_id:40065 AJ277570.1 Actinoplanes globisporus str. IMSNU 20030T prokMSA_id:52031 AB048219.1 Actinoplanes globisporus str. JCM 3186T 2.3.1.2.22.1.1395 OTU 1 seq prokMSA_id:12825 D14642.1 Catenuloplanes japonicus str. IFO14176 2.3.1.2.22.1.1414 OTU 1 seq prokMSA_id:12826 D14644.1 Catenuloplanes japonicus str. RA330 2.3.1.2.22.1.1421 OTU 1 seq prokMSA_id:12829 AB024701.1 Catenuloplanes crispus str. JCM 9312 2.3.1.2.22.1.1462 OTU 2 seqs prokMSA_id:12807 X93189.1 Pilimelia anulata str. DSM 43039 prokMSA_id:12808 X93190.1 Pilimelia terevasa str. DSM 43040 2.3.1.2.22.1.1488 OTU 9 seqs prokMSA_id:12810 X93187.1 Actinoplanes philippinensis str. DSM 43019 prokMSA_id:12815 U58525.1 Actinoplanes philippinensis str. ATCC12427 prokMSA_id:12816 U58526.1 Actinoplanes auranticolor str. IFO12245 prokMSA_id:20207 AJ277574.1 Actinoplanes utahensis str. IMSNU 20044T prokMSA_id:24378 AB047505.1 Actinoplanes sarveparensis str. IFO 13998 prokMSA_id:28575 AB047512.1 Actinoplanes sp. str. IFO 14460 prokMSA_id:36425 AB036995.1 Actinoplanes campanulatus str. IFO 12511T prokMSA_id:36612 AB047510.1 Actinoplanes sp. str. IFO 14265 prokMSA_id:51900 AB037012.1 Actinoplanes utahensis str. IFO 13244T 2.3.1.2.22.1.1542 OTU 5 seqs prokMSA_id:12818 X93186.1 Actinoplanes cyaneus str. DSM 46137 prokMSA_id:12819 X87322.1 Micromonosporaceae SR 83 prokMSA_id:21002 AB036997.1 Actinoplanes cyaneus str. IFO 14990T prokMSA_id:27565 AB047493.1 Actinoplanes garbadinensis str. IFO 13995T prokMSA_id:37443 AJ277575.1 Actinoplanes garbadinensis str. IMSNU 20040 2.3.1.2.22.1.1572 OTU 4 seqs prokMSA_id:28171 AB006169.1 Virgisporangium aurantiacum str. YU438-5 prokMSA_id:34942 AB006162.1 Virgisporangium ochraceum str. YU793-41 prokMSA_id:37925 AB006161.1 Virgisporangium ochraceum str. YU794-41 prokMSA_id:52890 AB006167.1 Virgisporangium ochraceum str. YU655-43 2.3.1.2.22.1.1615 OTU 13 seqs prokMSA_id:12820 X93188.1 Actinoplanes regularis str. DSM 43151 prokMSA_id:17991 AB047506.1 Actinoplanes sp. str. IFO 13943 prokMSA_id:24733 AB048217.1 Actinoplanes italicus str. JCM 3165T prokMSA_id:26230 AB037005.1 Actinoplanes italicus str. IFO 13911T prokMSA_id:32651 AB036999.1 Actinoplanes derwentensis str. IFO 14935T prokMSA_id:33156 AJ277580.1 Actinoplanes penicillatus str. IMSNU 22129 prokMSA_id:36834 AB047508.1 Actinoplanes sp. str. IFO 14066 prokMSA_id:39135 AB047489.1 Actinoplanes arizonaensis str. IFO 14837T prokMSA_id:44805 AB047507.1 Actinoplanes sp. str. IFO 13944 prokMSA_id:45208 AB047496.1 Actinoplanes kinshanensis str. IFO 13661T prokMSA_id:49393 AB047502.1 Actinoplanes regularis str. IFO 14065 prokMSA_id:51035 AB048218.1 Actinoplanes derwentensis str. JCM 7556T prokMSA_id:84117 AJ488567.1 Actinoplanes sp. str. 96 2.3.1.2.22.1.1633 OTU 7 seqs prokMSA_id:22339 AJ277585.1 Actinoplanes tuftoflagellus str. IMSNU 22135 prokMSA_id:23680 AJ277567.1 Actinoplanes digitatis str. IMSNU 22123T prokMSA_id:31721 AJ277566.1 Actinoplanes derwentensis str. IMSNU 20027T prokMSA_id:37247 AB047504.1 Actinoplanes rutilosporangius str. IFO 13970T prokMSA_id:39832 AJ277578.1 Actinoplanes pallidoaurantiacus str. IMSNU 22128 prokMSA_id:44085 AJ277572.1 Actinoplanes missouriensis str. IMSNU 22051T prokMSA_id:46305 AJ277582.1 Actinoplanes pyriformis str. IMSNU 22131 2.3.1.2.22.1.1641 OTU 6 seqs prokMSA_id:12881 X92626.1 "Micromonospora yulongensis" prokMSA_id:12882 X92619.1 "Micromonospora fulvoviolaceus" prokMSA_id:83284 AY221499.1 Micromonospora sp. str. N0161 prokMSA_id:93558 AY360154.1 Micromonospora sp. str. e7 prokMSA_id:108240 AB193559.1 Micromonospora sp. str. BTG4-1 prokMSA_id:110181 AB196714.1 Micromonospora marina str. JSM3-1 2.3.1.2.22.1.1689 OTU 2 seqs prokMSA_id:12834 X93185.1 Actinoplanes brasiliensis str. DSM 43805 prokMSA_id:17380 AB047516.1 Actinoplanes yunnanensis str. IFO 14459T 2.3.1.2.22.1.1722 OTU 3 seqs prokMSA_id:12886 X93199.1 Asanoa ferruginea str. DSM 44099 prokMSA_id:27139 AF131355.1 Catellatospora sp. IM-6046 str. IM 6046 prokMSA_id:38053 AF152108.1 Asanoa ferruginea str. IMSNU 22009T 2.3.1.2.22.1.1727 OTU 1 seq prokMSA_id:44279 AF171700.1 Catellatospora koreensis str. LM042T 2.3.1.2.22.1.1730 OTU 9 seqs prokMSA_id:17385 AJ277576.1 Actinoplanes ianthinogenes str. IMSNU 20032 prokMSA_id:19569 AJ277579.1 Actinoplanes liguriae str. IMSNU 22127 prokMSA_id:24564 AJ277577.1 Actinoplanes kinshanensis str. IMSNU 20034 prokMSA_id:29970 AB047495.1 Actinoplanes ianthinogenes str. IFO 13996T prokMSA_id:34180 AB047494.1 Actinoplanes ianthinogenes subsp. octamycini str. IFO 14524T subsp. prokMSA_id:37529 AB047513.1 Actinoplanes teichomyceticus str. IFO 13999T prokMSA_id:42133 AB047497.1 Actinoplanes liguriae str. IFO 13997T prokMSA_id:59321 AY040621.1 Salinospora sp. str. CNH725 prokMSA_id:59322 AY040620.1 Salinospora sp. str. CNH646 2.3.1.2.22.1.1750 OTU 4 seqs prokMSA_id:12900 X93193.1 Dactylosporangium matsuzakiense str. DSM 43810 prokMSA_id:12904 D86940.1 Dactylosporangium matsuzakiense str. IFO14259 prokMSA_id:12906 X93196.1 Dactylosporangium vinaceum str. DSM 43823 prokMSA_id:26254 AB017374.1 Actinomycete complete isolate str. SF2809 2.3.1.2.22.1.1760 OTU 5 seqs prokMSA_id:18388 AB047509.1 Actinoplanes sp. str. IFO 14264 prokMSA_id:26671 AB047500.1 Actinoplanes purpeobrunneus str. IFO 14020T prokMSA_id:28089 AJ277581.1 Actinoplanes purpeobrunneus str. IMSNU 22130 prokMSA_id:36605 AB047503.1 Actinoplanes roseosporangius str. IFO 13969T prokMSA_id:51486 AJ277583.1 Actinoplanes roseosporangius 2.3.1.2.22.1.1766 OTU 4 seqs prokMSA_id:12892 U58528.1 Dactylosporangium aurantiacum str. ATCC23491 prokMSA_id:12896 X93195.1 Dactylosporangium salmoneum str. DSM 43910 prokMSA_id:12897 D86938.1 Dactylosporangium salmoneum str. IFO14103 prokMSA_id:12905 X93191.1 Dactylosporangium aurantiacum str. DSM 43157 2.3.1.2.22.1.1770 OTU 4 seqs prokMSA_id:12898 D86942.1 Dactylosporangium fulvum str. IFO14381 prokMSA_id:12899 U58529.1 Dactylosporangium roseum str. IFO14352 prokMSA_id:12903 X93194.1 Dactylosporangium roseum str. DSM 43916 prokMSA_id:12907 X93192.1 Dactylosporangium fulvum str. DSM 43917 2.3.1.2.22.1.1821 OTU 7 seqs prokMSA_id:12887 X93198.1 Catellatospora citrea str. DSM 44098 prokMSA_id:12889 X93197.1 Catellatospora citrea str. DSM 44097 prokMSA_id:34467 Y09219.1 Catellatospora sp. LM182T prokMSA_id:35366 AF152106.1 Catellatospora subsp. citrea str. IMSNU 22008T subsp. prokMSA_id:46148 AF152107.1 Catellatospora citrea subsp. methionotrophica str. IMSNU 22006T subsp. prokMSA_id:111633 AB200231.1 Catellatospora sp. str. 2-25(1) prokMSA_id:111703 AB200232.1 Catellatospora sp. str. 2-29(17) 2.3.1.2.22.1.1847 OTU 1 seq prokMSA_id:30373 AF131350.1 Actinoplanes sp. IM-4188 str. IM 4188 2.3.1.2.22.1.1876 OTU 1 seq prokMSA_id:12835 D14645.1 Couchioplanes subsp. caeruleus str. IFO13939 2.3.1.2.22.1.1890 OTU 1 seq prokMSA_id:12839 D63912.1 Spirilliplanes yamanashiensis 2.3.1.2.22.1.1910 OTU 1 seq prokMSA_id:12817 AB013495.1 Actinoplanes capillaceus str. K95-5561 2.3.1.2.22.1.1931 OTU 1 seq prokMSA_id:12821 X80823.1 Actinoplanes utahensis 2.3.1.2.22.1.1972 OTU 5 seqs prokMSA_id:12828 X93201.1 Catenuloplanes japonicus str. DSM 44102 prokMSA_id:12830 D85476.1 Catenuloplanes japonicus str. IFO14176 prokMSA_id:41503 AB037011.1 Actinoplanes regularis str. IFO 12514T prokMSA_id:77587 AJ294716.1 Catenuloplanes atrovinosus str. IMSNU 22012T prokMSA_id:78124 AJ294717.1 Catenuloplanes indicus str. IMSNU 22099T 2.3.1.2.22.1.1997 OTU 1 seq prokMSA_id:45550 AF131356.1 Catellatospora sp. IM-7774 str. IM 7774 2.3.1.2.22.1.2051 OTU 6 seqs prokMSA_id:12836 D85479.1 Couchioplanes subsp. caeruleus str. IFO13939 prokMSA_id:12837 X93202.1 Couchioplanes caeruleus subsp. azureus str. DSM 44103 subsp. prokMSA_id:12838 D85478.1 Couchioplanes caeruleus subsp. azureus str. IFO13993 prokMSA_id:40127 AB047491.1 Actinoplanes auranticolor str. IFO 13992 prokMSA_id:46296 AB047511.1 Actinoplanes sp. str. IFO 14428 prokMSA_id:52136 AJ277584.1 Actinoplanes teichomyceticus str. IMSNU 20043 2.3.1.2.23 Microsphaeraceae 1 seq 2.3.1.2.23.1 sf_1 1 seq 2.3.1.2.23.1.1920 OTU 1 seq prokMSA_id:73670 AJ277689.1 2.3.1.2.24 Mycobacteriaceae 251 seqs 2.3.1.2.24.1 sf_1 251 seqs 2.3.1.2.24.1.1093 OTU 2 seqs prokMSA_id:13140 X88924.1 Mycobacterium triviale str. ATCC 23292 prokMSA_id:112844 AY734994.1 Mycobacterium triviale str. ATCC 23292 2.3.1.2.24.1.1117 OTU 1 seq prokMSA_id:13223 AF142816.1 clone ACE-41 2.3.1.2.24.1.1134 OTU 2 seqs prokMSA_id:13153 X88917.1 Mycobacterium sp. str. IWGMT 90247 prokMSA_id:13154 X88918.1 Mycobacterium sp. str. IWGMT 90233 2.3.1.2.24.1.1172 OTU 1 seq prokMSA_id:13166 Z73380.1 Actinomycete species (clone Ep_T1.252) clone Ep_T1.252 2.3.1.2.24.1.1175 OTU 6 seqs prokMSA_id:13162 M61664.1 Mycobacterium xenopi prokMSA_id:13235 X52929.1 Mycobacterium xenopi prokMSA_id:27854 AF101243.2 Mycobacterium sydneyiensis prokMSA_id:32230 AF174290.1 Mycobacterium heckeshornense str. S369 prokMSA_id:39844 AJ243481.1 Mycobacterium cf. xenopi 'Hymi_Wue Tb_939/99' str. Hymi_Wue Tb_939/99 prokMSA_id:78273 AJ536033.1 Mycobacterium xenopi str. DSM 43995 2.3.1.2.24.1.1180 OTU 9 seqs prokMSA_id:13040 AJ000684.1 Mycobacterium heidelbergense 2554/91 prokMSA_id:13041 X70960.1 Mycobacterium heidelbergense prokMSA_id:13043 X88908.1 Mycobacterium sp. prokMSA_id:13111 X88913.1 Mycobacterium sp. prokMSA_id:38495 AF133902.1 Mycobacterium kubicae str. CDC 941078 prokMSA_id:54449 AJ308603.1 Mycobacterium palustre str. E846 prokMSA_id:73821 AJ422048.1 Mycobacterium heidelbergense str. ITG 7971 (MB43) prokMSA_id:85375 AJ550515.1 Mycobacterium sp. SA394 prokMSA_id:85394 AF541924.1 Mycobacterium sp. str. YM12 2.3.1.2.24.1.1187 OTU 25 seqs prokMSA_id:13048 X55600.1 Mycobacterium madagascariense prokMSA_id:13056 X55597.1 Mycobacterium obuense prokMSA_id:13076 AF058299.1 Mycobacterium tusciae str. FI-25796 prokMSA_id:13099 AB010912.1 Mycobacterium sp. str. SRB1948-E04 E04 prokMSA_id:13105 X55595.1 Mycobacterium aurum prokMSA_id:13137 X93184.1 Mycobacterium hodleri str. DSM 44183 prokMSA_id:13138 X80768.1 Mycobacterium isoniacini INA-I prokMSA_id:13141 X55599.1 Mycobacterium gilvum prokMSA_id:13148 X93026.1 Mycobacterium sp. prokMSA_id:13151 X55602.1 Mycobacterium thermoresistibile prokMSA_id:13158 AF165182.1 Mycobacterium sp. str. C2-3 prokMSA_id:13172 X55594.1 Mycobacterium gadium prokMSA_id:13179 X55601.1 Mycobacterium vaccae prokMSA_id:13253 Y08857.1 Mycobacterium sp. str. MA-112/96 prokMSA_id:23360 AF480591.1 Mycobacterium vaccae str. ATCC 15483 prokMSA_id:32288 AF480590.1 Mycobacterium tokaiense str. ATCC 27282 prokMSA_id:34222 AF480576.1 Mycobacterium brumae str. ATCC 51384 prokMSA_id:67497 AJ441306.1 Mycobacterium sp. str. HXN100 prokMSA_id:68741 AF479359.1 glacial ice isolate str. SB12K-2-16 prokMSA_id:70827 AF498656.1 Mycobacterium aichiense str. JS618 prokMSA_id:81725 AY211074.1 anaerobic VC-degrading enrichment clone VC17 sp. prokMSA_id:86938 AB009578.1 Mycobacterium sp. str. PP1 prokMSA_id:103019 AY642533.1 Mycobacterium sp. str. THO100 prokMSA_id:105310 AY436799.1 Mycobacterium sp. str. EM3 prokMSA_id:106983 AF408955.1 Mycobacterium sp. str. Ellin113 2.3.1.2.24.1.1204 OTU 1 seq prokMSA_id:13039 M95488.1 Mycobacterium sp. 3 2.3.1.2.24.1.1239 OTU 6 seqs prokMSA_id:13118 AF055331.1 Mycobacterium ratisbonense prokMSA_id:13191 Y15709.1 Mycobacterium anthracenicum prokMSA_id:13194 AF055332.1 Mycobacterium sp. str. M0183 prokMSA_id:19289 AJ271863.1 Mycobacterium ratisbonense str. SD4 prokMSA_id:28701 AF480586.1 Mycobacterium mucogenicum str. ATCC 49650 prokMSA_id:67346 AF494537.1 Mycobacterium sp. str. BPC5 2.3.1.2.24.1.1262 OTU 18 seqs prokMSA_id:13047 X67096.1 Mycobacterium hiberniae prokMSA_id:13103 M29563.1 Mycobacterium gordonae prokMSA_id:13115 U65104.1 Mycobacterium sp prokMSA_id:13120 X55603.1 Mycobacterium chitae prokMSA_id:13146 AJ010747.1 Mycobacterium elephantis prokMSA_id:13147 X93033.1 Mycobacterium sp. str. MCRO 7 prokMSA_id:13197 X52928.1 Mycobacterium nonchromogenicum prokMSA_id:13198 X93032.1 Mycobacterium sp. prokMSA_id:13239 M29556.1 Mycobacterium asiaticum prokMSA_id:13261 X63608.1 Mycobacterium confluentis prokMSA_id:27078 AJ310467.1 Mycobacterium holsaticum str. 1406 prokMSA_id:27836 AF385898.1 Mycobacterium elephantis str. NRCM 01-17 prokMSA_id:42140 AF480577.1 Mycobacterium engbaekii str. ATCC 27353 prokMSA_id:50846 AJ416911.1 Mycobacterium sp. str. MB65 prokMSA_id:72357 AF480600.1 Mycobacterium fallax str. ATCC 35219 prokMSA_id:78035 AJ536100.1 Mycobacterium elephantis str. FI-13900 prokMSA_id:92711 AY360325.1 Mycobacterium sp. str. NIPHL130302 prokMSA_id:100007 AJ634379.1 Mycobacterium confluentis str. DSM 44017 2.3.1.2.24.1.1308 OTU 6 seqs prokMSA_id:13150 AF107039.1 Mycobacterium monacense str. B9-21-178 prokMSA_id:13199 U46146.1 Mycobacterium sp. prokMSA_id:20317 AF387803.1 Mycobacterium sp. str. MCS prokMSA_id:23135 AF387804.1 Mycobacterium sp. str. JLS prokMSA_id:68650 AY083217.1 Mycobacterium sp. str. KMS prokMSA_id:75651 AJ431371.1 Mycobacterium pyrenivorans str. DSM 44605 2.3.1.2.24.1.1312 OTU 2 seqs prokMSA_id:13187 X65528.1 Mycobacterium fortuitum str. ATCC 49403 prokMSA_id:13256 X65529.1 Mycobacterium fortuitum str. ATCC 49404 2.3.1.2.24.1.1317 OTU 1 seq prokMSA_id:32952 AF418956.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTDD3 2.3.1.2.24.1.1365 OTU 16 seqs prokMSA_id:13116 AJ011771.1 Mycobacterium immunogenum MN 3744 prokMSA_id:13119 AF152558.1 Mycobacterium n. sp. 'Fuerth 1999' str. 01.22.181 sp. prokMSA_id:19458 AF480592.1 Mycobacterium abscessus str. ATCC 19977 prokMSA_id:29667 AJ416940.1 Mycobacterium abscessus str. MB849 prokMSA_id:32018 AJ419970.1 Mycobacterium abscessus str. ITG 98-1292 prokMSA_id:33483 AF480594.1 Mycobacterium chelonae str. ATCC 35752 prokMSA_id:37469 AJ416939.1 Mycobacterium chelonae str. MB300 prokMSA_id:42323 AJ419968.1 Mycobacterium chelonae str. ITG 96-0295 prokMSA_id:42486 AF316618.1 Mycobacterium fuerthensis prokMSA_id:67500 AJ441307.1 Mycobacterium fuerthensis str. HXN1000 prokMSA_id:73622 AJ416941.1 Mycobacterium chelonae str. MB834 prokMSA_id:78097 AJ536038.1 Mycobacterium abscessus str. DSM 44196 prokMSA_id:108582 AY457071.1 Mycobacterium abscessus str. CIP 104536T prokMSA_id:108583 AY457072.1 Mycobacterium chelonae str. CIP 104535T prokMSA_id:108593 AY457082.1 Mycobacterium chelonae str. ATCC 19237 prokMSA_id:111276 AY593980.1 Mycobacterium massiliense str. CCUG 48898 2.3.1.2.24.1.1435 OTU 9 seqs prokMSA_id:13068 X80769.1 Mycobacterium sp. 2186/92 prokMSA_id:13091 X88906.1 Mycobacterium sp. prokMSA_id:13108 X93995.1 Mycobacterium str. 89-446 prokMSA_id:13110 X93029.1 Mycobacterium sp. prokMSA_id:13200 X60070.1 Mycobacterium genavense prokMSA_id:13264 X73630.1 Mycobacterium species prokMSA_id:28531 AF480583.1 Mycobacterium lentiflavum str. ATCC 51985 prokMSA_id:47839 U57632.1 Mycobacterium triplex prokMSA_id:53023 AJ276890.1 Mycobacterium cf. triplex 'isolate 23' 23 2.3.1.2.24.1.1637 OTU 6 seqs prokMSA_id:13057 X84977.2 Mycobacterium species prokMSA_id:13096 AF190800.1 Mycobacterium austroafricanum str. IFP2173 prokMSA_id:13221 U30662.1 Mycobacterium sp. prokMSA_id:58279 AF544622.1 Mycobacterium austroafricanum VM0456 prokMSA_id:70204 AF544623.1 Mycobacterium austroafricanum VM0450 prokMSA_id:74074 AF544624.1 Mycobacterium austroafricanum VM0451 2.3.1.2.24.1.1650 OTU 24 seqs prokMSA_id:13077 X55589.1 Mycobacterium bovis prokMSA_id:13086 Z46664.1 Mycobacterium celatum prokMSA_id:13102 Z13990.1 Mycobacterium ulcerans prokMSA_id:13104 L08170.1 Mycobacterium celatum prokMSA_id:13129 X55604.1 Mycobacterium asiaticum prokMSA_id:13173 X55588.1 Mycobacterium tuberculosis prokMSA_id:13177 X58890.1 Mycobacterium tuberculosis prokMSA_id:13182 M20940.1 Mycobacterium bovis prokMSA_id:13204 X70961.1 Mycobacterium interjectum prokMSA_id:13206 AF014936.1 Mycobacterium interjectum patient 2 prokMSA_id:13207 AF014937.1 Mycobacterium interjectum patient 3 prokMSA_id:13208 X93034.1 Mycobacterium sp. str. MCRO 8 prokMSA_id:13209 X88915.1 Mycobacterium sp. prokMSA_id:13211 X88910.1 Mycobacterium sp. prokMSA_id:13224 L08169.1 Mycobacterium celatum prokMSA_id:13226 AF016407.1 Mycobacterium sp. str. IMVS B76676 prokMSA_id:18959 AF217192.1 Mycobacterium sp. 'Sydney 2453' Sydney 2453 'Sydney prokMSA_id:31828 AF480595.1 Mycobacterium asiaticum str. ATCC 25276 prokMSA_id:36821 AF480598.1 Mycobacterium cookii str. ATCC 49103 prokMSA_id:52725 AF480584.1 Mycobacterium microti prokMSA_id:64868 AF410479.1 Mycobacterium avium Myc373 prokMSA_id:66586 AF502574.1 Mycobacterium pinnipedii prokMSA_id:70429 AJ416914.1 Mycobacterium celatum str. MB72 prokMSA_id:77688 AJ536040.1 Mycobacterium celatum str. DSM 44243 2.3.1.2.24.1.1681 OTU 2 seqs prokMSA_id:84725 AY227356.1 Mycobacterium sp. str. 1B(CD) prokMSA_id:86670 AY227355.1 Mycobacterium sp. str. 1B(CD) 2.3.1.2.24.1.1726 OTU 5 seqs prokMSA_id:13085 X52925.1 Mycobacterium terrae prokMSA_id:13233 M29568.1 Mycobacterium terrae prokMSA_id:26897 X93027.1 Mycobacterium sp. prokMSA_id:49725 X93031.1 Mycobacterium sp. prokMSA_id:69729 AF456242.1 Mycobacterium sp. 'graecum DL049' str. graecum DL049 'graecum 2.3.1.2.24.1.1728 OTU 13 seqs prokMSA_id:13054 X82459.1 Mycobacterium shimoidei prokMSA_id:13055 AJ005005.1 Mycobacterium shimoidei str. ATCC 27962 prokMSA_id:13067 X53999.1 Mycobacterium leprae prokMSA_id:13074 U90876.1 Mycobacterium sp. str. RF002 prokMSA_id:13142 X55591.1 Mycobacterium komossense prokMSA_id:13163 X55022.1 Mycobacterium leprae prokMSA_id:13186 AJ007009.1 Mycobacterium sp. LAB2 prokMSA_id:13228 X82234.1 Mycobacterium species prokMSA_id:13246 U15186.1 Mycobacterium leprae prokMSA_id:18116 AF480574.1 Mycobacterium branderi str. ATCC 51789 prokMSA_id:28966 AJ429045.1 Mycobacterium agri str. DSM 44515T prokMSA_id:32619 AF284430.1 Mycobacterium sp. str. ESD prokMSA_id:34657 AF448435.1 Mycobacterium sp. str. MEU-1 2.3.1.2.24.1.1781 OTU 6 seqs prokMSA_id:13053 X84978.1 Mycobacterium species prokMSA_id:13073 U30661.1 Mycobacterium sp. prokMSA_id:13075 AJ012626.1 Mycobacterium sp. str. GP1 prokMSA_id:13174 X55598.1 Mycobacterium aichiense prokMSA_id:38064 AJ429047.1 Mycobacterium rhodesiae str. DSM 44223T prokMSA_id:60765 AF498650.1 Mycobacterium rhodesiae str. JS60 2.3.1.2.24.1.1857 OTU 2 seqs prokMSA_id:13069 U49401.1 Mycobacterium hassiacum prokMSA_id:13070 AF000225.1 Mycobacterium buckleii 2.3.1.2.24.1.1860 OTU 29 seqs prokMSA_id:13058 X58954.1 Mycobacterium ulcerans prokMSA_id:13059 X88926.1 Mycobacterium ulcerans str. Borstel 10564/70 prokMSA_id:13078 X52930.1 Mycobacterium malmoense prokMSA_id:13079 AF152560.1 Mycobacterium malmoense str. RV423C prokMSA_id:13122 X88925.1 Mycobacterium paraffinicum str. ATCC 12670 prokMSA_id:13123 X88911.1 Mycobacterium sp. prokMSA_id:13124 X88912.1 Mycobacterium sp. prokMSA_id:13139 X15916.1 Mycobacterium kansasii prokMSA_id:13152 X52927.1 Mycobacterium intracellulare prokMSA_id:13165 U06638.1 Mycobacterium haemophilum prokMSA_id:13167 U84502.1 Mycobacterium bohemicum prokMSA_id:13168 X88923.1 Mycobacterium haemophilum prokMSA_id:13202 X52920.1 Mycobacterium marinum prokMSA_id:13227 L24800.1 Mycobacterium haemophilum prokMSA_id:13230 X52919.1 Mycobacterium gastri prokMSA_id:13262 X67847.1 Mycobacterium intermedium prokMSA_id:18950 AF406783.1 Mycobacterium lacus str. NRCM 00-255 prokMSA_id:23068 AY005147.2 Mycobacterium shottsii str. M175 prokMSA_id:38629 AF480604.1 Mycobacterium scrofulaceum str. ATCC 19981 prokMSA_id:50858 AF251565.1 Mycobacterium marinum prokMSA_id:52968 AJ277283.1 Mycobacterium bohemicum str. E590 prokMSA_id:54160 AJ277284.1 Mycobacterium bohemicum str. E743 prokMSA_id:66700 AF367025.1 Mycobacterium malmoense Myc250 prokMSA_id:69220 AF456240.1 Mycobacterium marinum str. ATCC 927 prokMSA_id:69661 AF456239.1 Mycobacterium marinum str. cyprinum CC240299 prokMSA_id:69678 AF456238.1 Mycobacterium marinum str. eilaticum DL240490 prokMSA_id:72489 AF456241.1 Mycobacterium marinum str. hellenicum DL045 prokMSA_id:77825 AJ536035.1 Mycobacterium kansasii str. DSM 44162 prokMSA_id:79404 AY184225.1 Mycobacterium sp. HSC 1852 2.3.1.2.24.1.1885 OTU 11 seqs prokMSA_id:13035 X55593.1 Mycobacterium diernhoferi prokMSA_id:13184 AF054278.1 Mycobacterium sp. str. CH-1 prokMSA_id:13185 AB010910.1 Mycobacterium sp. str. SRB1151-113 JoyU prokMSA_id:20364 AF480593.1 Mycobacterium neoaurum str. ATCC 25795 prokMSA_id:30438 AF268445.1 Mycobacterium neoaurum prokMSA_id:30995 AF480599.1 Mycobacterium diernhoferi str. ATCC 19340 prokMSA_id:46211 AJ276274.1 Mycobacterium frederiksbergense str. DSM 44346 prokMSA_id:67483 AJ457057.1 Mycobacterium sp. str. HXN1500 prokMSA_id:73637 AJ245702.1 Mycobacterium sp. str. LB501T prokMSA_id:84497 AY255478.1 Mycobacterium canariasense str. 502329 prokMSA_id:84713 AY266138.1 Mycobacterium hackensackense str. 147-0552 2.3.1.2.24.1.1888 OTU 2 seqs prokMSA_id:70548 AY162029.1 Mycobacterium sp. str. JS624 prokMSA_id:73627 AY012577.2 Mycobacterium brisbanense str. W6743; ATCC 49938 2.3.1.2.24.1.2034 OTU 45 seqs prokMSA_id:13032 X79292.1 Mycobacterium chlorophenolicum prokMSA_id:13033 U90877.1 Mycobacterium sp. str. WF2 prokMSA_id:13050 X52933.1 Mycobacterium fortuitum prokMSA_id:13066 X93183.1 Mycobacterium parafortuitum str. DSM 43528 prokMSA_id:13114 AF055333.1 Mycobacterium farcinogenes str. ATCC35753 prokMSA_id:13145 U94745.1 Mycobacterium duvalii str. ATCC 43910 prokMSA_id:13160 AJ012738.1 Mycobacterium sp. str. HE5 prokMSA_id:13164 X55596.1 Mycobacterium chubuense prokMSA_id:13183 AF023664.1 Mycobacterium alvei str. CIP 103464 prokMSA_id:13188 X79094.1 Mycobacterium chlorophenolicus prokMSA_id:13190 X52921.1 Mycobacterium chelonae prokMSA_id:13192 AB023372.1 Mycobacterium sp. IFO16251 str. IFO 16251 prokMSA_id:13193 AJ011510.1 Mycobacterium sp. str. DhA-55 prokMSA_id:13249 Y12872.1 Mycobacterium goodii M069 prokMSA_id:13250 Y08453.1 Mycobacterium smegmatis str. mc2 155 prokMSA_id:13251 AF058712.1 Mycobacterium peregrinum str. ATCC14467; NCTC10264 prokMSA_id:13252 Y12873.1 Mycobacterium wolinskyi str. 700010 mo739 prokMSA_id:13254 AJ011335.1 Mycobacterium mageritense 1336 prokMSA_id:13255 Y12871.1 Mycobacterium wolinskyi str. ATCC 700009 prokMSA_id:18390 AF111809.2 Mycobacterium septicum str. W4964 prokMSA_id:22210 AF480597.1 Mycobacterium chubuense str. ATCC 27278 prokMSA_id:22237 AF247497.1 Mycobacterium sp. SM7.6.1 prokMSA_id:23238 AJ416909.1 Mycobacterium septicum str. MB804 prokMSA_id:23960 AF480603.1 Mycobacterium phlei str. ATCC 11758 prokMSA_id:25000 AF480578.1 Mycobacterium flavescens str. ATCC 23008 prokMSA_id:25175 AY012575.2 Mycobacterium neworleansense str. W6705; ATCC 49404 prokMSA_id:25519 AY012576.2 Mycobacterium concordense str. W6238; ATCC BAA-329 prokMSA_id:26463 AJ416910.1 Mycobacterium fortuitum str. MB44 prokMSA_id:28402 AF480580.1 Mycobacterium fortuitum str. ATCC 49403 prokMSA_id:28739 AY012574.2 Mycobacterium porcinum str. W6232; ATCC BAA-328 prokMSA_id:30001 AY012573.2 Mycobacterium bonickei str. W5998; ATCC 49935 prokMSA_id:39806 AB028483.1 Mycobacterium sp. str. TA5 prokMSA_id:43972 AF480596.1 Mycobacterium senegalense str. ATCC 35796 prokMSA_id:47184 AF480581.1 Mycobacterium fortuitum str. ATCC 49404 prokMSA_id:58772 AJ509013.1 Mycobacterium sp. str. CF1 prokMSA_id:65316 AF513815.1 Mycobacterium goodii str. X7B prokMSA_id:67481 AJ457055.1 Mycobacterium septicum str. HXN500 prokMSA_id:67482 AJ457056.1 Mycobacterium septicum str. HXN1900 prokMSA_id:71981 AY012580.2 Mycobacterium porcinum str. W6234; ATCC 49939 prokMSA_id:78325 AJ536039.1 Mycobacterium subsp. fortuitum str. DSM 46621 subsp. prokMSA_id:78549 AJ534886.1 Mycobacterium psychrotolerans str. WA101 prokMSA_id:78930 AY177352.2 Mycobacterium sp. str. I5 prokMSA_id:79505 AY188086.1 Mycobacterium sp. str. NB01 prokMSA_id:86344 AY147261.1 Mycobacterium sp. str. DSM 3803 prokMSA_id:86633 AF491284.1 Mycobacterium sp. str. Myc399 2.3.1.2.24.1.2056 OTU 1 seq prokMSA_id:13218 Z50172.1 Mycobacterium str. tilburgii strain 2.3.1.2.25 Nocardiaceae 351 seqs 2.3.1.2.25.1 sf_1 350 seqs 2.3.1.2.25.1.1091 OTU 5 seqs prokMSA_id:13534 AF001265.1 Rhodococcus erythropolis str. IGTS8; ATCC 53968 prokMSA_id:13576 U89713.1 Rhodococcus globerulus str. PWD1 prokMSA_id:49466 AF260709.1 Nocardioides sp. str. S2 prokMSA_id:66626 AY094491.1 extracted chamber connected to Ocean Drilling Program site 892b clone sp. prokMSA_id:73025 AF442524.1 Bromate-reducing isolate str. B8 2.3.1.2.25.1.1142 OTU 1 seq prokMSA_id:24660 AF131484.1 Rhodococcus sp. IM-43760 str. IM 43760 2.3.1.2.25.1.1146 OTU 20 seqs prokMSA_id:13605 X80593.1 Nocardia nova prokMSA_id:13621 Z36930.1 Nocardia nova prokMSA_id:13623 Z37136.1 Nocardia pseudosporangifera str. JCM 3288 prokMSA_id:13636 X80599.1 Nocardia otitidiscaviarum prokMSA_id:81101 AF430028.1 Nocardia nova str. JCM 6044 prokMSA_id:81390 AF430030.1 Nocardia nova str. S559 prokMSA_id:81683 AF430068.1 Nocardia otitidiscaviarum str. S639 prokMSA_id:82005 AF430029.1 Nocardia nova str. S556 prokMSA_id:82030 AF430031.1 Nocardia nova str. DSM 43256 prokMSA_id:82279 AF430061.1 Nocardia sp. str. DSM 46070 prokMSA_id:82443 AF430067.1 Nocardia otitidiscaviarum str. DSM 43242 prokMSA_id:88885 AY191250.1 Nocardia nova str. ATCC 33726T prokMSA_id:100626 AB162790.1 Nocardia nova str. IFM 10265 prokMSA_id:102380 AF430032.1 Nocardia nova str. DSM 40806 prokMSA_id:104968 AB162783.1 Nocardia nova str. IFM 0261 prokMSA_id:105118 AB162784.1 Nocardia nova str. IFM 0272 prokMSA_id:105284 AB162785.1 Nocardia nova str. IFM 0297 prokMSA_id:105589 AB162787.1 Nocardia nova str. IFM 0579 prokMSA_id:105889 AB162789.1 Nocardia nova str. IFM 10038 prokMSA_id:105893 AB162801.1 Nocardia sp. str. IFM 0323 2.3.1.2.25.1.1163 OTU 5 seqs prokMSA_id:13588 X82052.1 Corynebacterium hoagii prokMSA_id:13593 X80614.1 Rhodococcus equi prokMSA_id:13594 X80613.1 Nocardia restrica prokMSA_id:49374 AJ272469.1 Rhodococcus equi str. CUB1156 prokMSA_id:83293 AF490539.1 Rhodococcus equi str. DSM 20307T 2.3.1.2.25.1.1177 OTU 11 seqs prokMSA_id:13600 Z36929.1 Nocardia carnea prokMSA_id:13601 Z46754.1 Nocardia flavorosea str. JCM 3332 prokMSA_id:13606 X80602.1 Nocardia carnea prokMSA_id:18053 Z82230.1 Nocardia asteroides str. N565 prokMSA_id:81064 AF430023.1 Nocardia sp. str. DSM 43254 prokMSA_id:81205 AF430048.1 Nocardia flavorosea str. JCM 3342 prokMSA_id:81484 AF430035.1 Nocardia carnea str. DSM 43397 prokMSA_id:81540 AF430021.1 Nocardia sp. str. DSM 43253 prokMSA_id:81651 AF430036.1 Nocardia carnea str. S547 prokMSA_id:81678 AF430022.1 Nocardia sp. str. DSM 43576 prokMSA_id:81766 AF430037.1 Nocardia carnea str. DSM 46071 2.3.1.2.25.1.1199 OTU 11 seqs prokMSA_id:13501 X81934.1 Rhodococcus zopfii prokMSA_id:13506 X81928.1 Rhodococcus coprophilus prokMSA_id:13507 X80626.1 Rhodococcus coprophilus prokMSA_id:13509 AJ007001.1 Rhodococcus sp. LB1 prokMSA_id:13510 AF191343.1 Rhodococcus zopfii str. DSM 44108 (T) prokMSA_id:13511 U93340.1 Rhodococcus coprophilus str. JCM 3200 prokMSA_id:13515 AJ007003.1 Rhodococcus sp. LG3 prokMSA_id:19630 AB066343.1 Rhodococcus sp. str. B184 prokMSA_id:43835 AJ306402.1 Rhodococcus coprophilus orange NZRM 4028 prokMSA_id:77648 AB098592.1 Rhodococcus sp. str. TUT1024 prokMSA_id:77968 AB098593.1 Rhodococcus sp. str. TUT1025 2.3.1.2.25.1.1203 OTU 4 seqs prokMSA_id:13519 X81935.1 Rhodococcus rhodnii prokMSA_id:13520 X80622.1 Rhodococcus rhodnii prokMSA_id:13521 X80621.1 Rhodococcus rhodnii prokMSA_id:13522 X80623.1 Rhodococcus rhodnii 2.3.1.2.25.1.1259 OTU 4 seqs prokMSA_id:13531 X80619.1 Rhodococcus globerulus prokMSA_id:13559 X81931.1 Rhodococcus globerulus prokMSA_id:78857 AB094463.1 Rhodococcus sp. str. 2216.25.15 prokMSA_id:81495 AF430065.1 Nocardia globerula str. DSM 46019 2.3.1.2.25.1.1261 OTU 1 seq prokMSA_id:47640 AF459443.1 Nocardia caishijiensis str. F829 2.3.1.2.25.1.1287 OTU 4 seqs prokMSA_id:13614 Z37989.1 Nocardia crassostreae str. NB4H C.S. Friedman prokMSA_id:13615 U92799.1 Nocardia crassostreae str. RB1 prokMSA_id:13616 U92800.1 Nocardia crassostreae str. OB3 prokMSA_id:81719 AF430049.1 Nocardia crassostreae str. JCM 10500 2.3.1.2.25.1.1304 OTU 1 seq prokMSA_id:63690 AF421564.1 Nocardia sp. str. 99-08-244A 2.3.1.2.25.1.1321 OTU 1 seq prokMSA_id:71341 AY036054.1 Nocardia devorans str. N1086 2.3.1.2.25.1.1336 OTU 10 seqs prokMSA_id:13536 X76690.1 Rhodococcus species prokMSA_id:13538 AF181691.1 Rhodococcus sp. str. 7/1 prokMSA_id:21162 AB037105.1 Rhodococcus erythropolis str. D3213 prokMSA_id:34073 AJ250924.1 Rhodococcus erythropolis str. TB2 prokMSA_id:50108 AY077846.1 Rhodococcus sp. str. 1awq prokMSA_id:59996 AJ505559.1 Rhodococcus sp. 4115 prokMSA_id:61953 AJ244660.2 Rhodococcus sp. str. V4.BO.16 = MM_2365 prokMSA_id:65227 AF512839.1 Rhodococcus erythropolis prokMSA_id:75836 AY167968.1 manure prokMSA_id:83380 AY249053.1 Rhodococcus sp. BDC14 2.3.1.2.25.1.1350 OTU 13 seqs prokMSA_id:13503 X80625.1 Rhodococcus ruber prokMSA_id:13504 AF103733.1 Rhodococcus sp. str. YH1 prokMSA_id:32848 AF350248.1 Rhodococcus ruber str. AS4.1187 prokMSA_id:60987 AF529079.1 Rhodococcus sp. str prokMSA_id:63346 AY114177.1 Rhodococcus ruber str. AS 4.1038 prokMSA_id:64675 AF420413.1 Rhodococcus sp. str. USA-AN012 prokMSA_id:64753 AY114109.1 Rhodococcus sp. str. E33 prokMSA_id:67231 AF447392.1 Rhodococcus aetherivorans str. Bc663 prokMSA_id:67233 AF447391.1 Rhodococcus aetherivorans str. 10bc312 prokMSA_id:85556 AY247275.1 Rhodococcus ruber str. M2 prokMSA_id:108236 AY785745.1 Rhodococcus ruber OUCZ91B prokMSA_id:109337 AY822615.1 Rhodococcus sp. str. P15 prokMSA_id:114070 AY927223.1 Rhodococcus sp. str. DEE5151 2.3.1.2.25.1.1356 OTU 1 seq prokMSA_id:46104 AF131447.1 Nocardia sp. IM-5391 str. IM 5391 2.3.1.2.25.1.1372 OTU 17 seqs prokMSA_id:13530 X81929.1 Rhodococcus erythropolis prokMSA_id:13537 AF046885.1 Rhodococcus sp. str. Q15 prokMSA_id:13540 X89240.1 Rhodococcus sp. prokMSA_id:13551 X79289.1 "Rhodococcus erythreus" prokMSA_id:13552 U87968.1 Rhodococcus sp. str. X309 prokMSA_id:13555 AJ131637.1 Rhodococcus erythropolis str. DCL14 prokMSA_id:20687 X85239.1 Rhodococcus sp. str. J32 prokMSA_id:21207 AF235012.1 Rhodococcus sp. UFZ-B528 prokMSA_id:21646 AJ250925.1 Rhodococcus erythropolis str. m15-3 prokMSA_id:32093 AJ313018.1 Rhodococcus sp. MN 38 prokMSA_id:40386 AJ250927.1 Rhodococcus erythropolis str. Y2 prokMSA_id:59470 AB071951.1 Rhodococcus baikonurensis str. GTC 1041 prokMSA_id:59505 AJ490526.1 Rhodococcus erythropolis str. AJ270 prokMSA_id:68494 AF487704.1 Nocardia sp. str. H17-1 prokMSA_id:69972 AB046362.1 Rhodococcus erythropolis str. IFO 16296 prokMSA_id:82864 AB108557.1 Rhodococcus sp. str. TMP2 prokMSA_id:84166 AB108558.1 Rhodococcus sp. str. T12 2.3.1.2.25.1.1403 OTU 13 seqs prokMSA_id:13630 Z46750.1 Nocardia salmonicida str. JCM 4826 () prokMSA_id:25032 AF277210.1 Nocardia sp. str. R7 prokMSA_id:33953 AF277227.1 Nocardia sp. str. R441 prokMSA_id:35733 AF277211.1 Nocardia sp. str. R25 prokMSA_id:36510 AF277219.1 Nocardia sp. str. W504 prokMSA_id:44760 AF277217.1 Nocardia sp. str. R47 prokMSA_id:45989 AF277212.1 Nocardia sp. str. R18 prokMSA_id:47333 AF277205.1 Nocardia sp. str. W32 prokMSA_id:48639 AF277224.1 Nocardia sp. str. R147 prokMSA_id:49884 AF277208.1 Nocardia sp. str. R112 prokMSA_id:81098 AF430063.1 Nocardia sp. str. DSM 6249 prokMSA_id:81778 AF430053.1 Nocardia fluminea str. DSM 44489 prokMSA_id:82203 AF430050.1 Nocardia salmonicida str. DSM 40472 2.3.1.2.25.1.1432 OTU 21 seqs prokMSA_id:13628 X80597.1 Nocardia vaccinii prokMSA_id:13632 Z36927.1 Nocardia vaccinii prokMSA_id:13633 AF060790.1 Nocardia cerradoensis str. Y9 prokMSA_id:20332 AF277198.1 Nocardia africana prokMSA_id:24358 AF278572.1 Nocardia veterana str. M157222; DSM 44445T prokMSA_id:38297 AF302230.1 Nocardia africana str. SD925 prokMSA_id:40966 AF302232.1 Nocardia africana str. SD880 prokMSA_id:43786 AF302231.1 Nocardia africana str. SD910 prokMSA_id:55920 AY149599.1 Nocardia veterana str. CIP 107497; CCUG 46576 B430 prokMSA_id:81458 AF430045.1 Nocardia vaccinii str. DSM 43285 prokMSA_id:81459 AF430059.1 Nocardia veterana str. DSM 40777 prokMSA_id:82272 AF430054.1 Nocardia africana prokMSA_id:82356 AF430055.1 Nocardia veterana str. DSM 44445 prokMSA_id:83004 AY089701.1 Nocardia africana str. DSM 44491 prokMSA_id:84635 AF490540.1 Nocardia veterana str. DSM 43557 prokMSA_id:85655 AY171039.1 Nocardia veterana str. DSM44445 prokMSA_id:89234 AY191253.1 Nocardia veterana str. DSM 44445T prokMSA_id:89609 AY191252.1 Nocardia vaccinii str. ATCC 11092T prokMSA_id:105868 AY441974.1 Nocardia kruczakiae str. MB2876 prokMSA_id:108813 AJ854057.1 Nocardia elegans str. IMMIB N-402 prokMSA_id:108814 AJ854058.1 Nocardia elegans str. IMMIB N-403 2.3.1.2.25.1.1440 OTU 1 seq prokMSA_id:20154 AJ277837.1 2.3.1.2.25.1.1454 OTU 5 seqs prokMSA_id:58653 AB092437.1 Nocardia sp. YU011-1 prokMSA_id:82068 AF430060.1 Nocardia sp. str. DSM 40872 prokMSA_id:82698 AB092563.1 Nocardia niigatensis str. IFM 0330 prokMSA_id:83505 AB092562.1 Nocardia niigatensis str. IFM 0260 prokMSA_id:84206 AB092561.1 Nocardia yamanashiensis str. IFM 0265 2.3.1.2.25.1.1552 OTU 5 seqs prokMSA_id:13629 X57949.1 Nocardia asteroides prokMSA_id:35195 AF282889.1 Nocardia cyriacigeorgica str. D1627T prokMSA_id:81150 AF430027.1 Nocardia cyriacigeorgica str. DSM 44484 prokMSA_id:81647 AF430020.1 Nocardia cyriacigeorgica str. DSM 43005 prokMSA_id:83908 AY244782.1 Nocardia cyriacigeorgica str. 2002-2301309 2.3.1.2.25.1.1585 OTU 5 seqs prokMSA_id:31681 AF277214.1 Nocardia sp. str. R32 prokMSA_id:33810 AF277215.1 Nocardia sp. str. R31 prokMSA_id:43502 AF277226.1 Nocardia sp. str. R98 prokMSA_id:48203 AF277213.1 Nocardia sp. str. R11 prokMSA_id:52632 AF277209.1 Nocardia sp. str. W433 2.3.1.2.25.1.1600 OTU 6 seqs prokMSA_id:13647 X84852.1 Nocardia pseudobrasiliensis prokMSA_id:13649 X84854.1 Nocardia pseudobrasiliensis prokMSA_id:63688 AF421565.1 Nocardia sp. str. 97-21-103A prokMSA_id:64359 AB086861.1 Nocardia pseudobrasiliensis str. IFM 10098 prokMSA_id:81200 AF430042.1 Nocardia pseudobrasiliensis str. DSM 44290 prokMSA_id:82307 AF430043.1 Nocardia pseudobrasiliensis str. JCM 9883 2.3.1.2.25.1.1680 OTU 1 seq prokMSA_id:13553 U87969.1 Rhodococcus sp. str. B1 2.3.1.2.25.1.1696 OTU 6 seqs prokMSA_id:13617 X84850.1 Nocardia asteroides prokMSA_id:13624 X80606.1 Nocardia asteroides prokMSA_id:13635 Z36934.1 Nocardia asteroides prokMSA_id:19866 AF331799.1 Nocardia sp. 4.1177 prokMSA_id:82196 AF430019.1 Nocardia asteroides str. DSM 43757 prokMSA_id:82420 AF430026.1 Nocardia asteroides str. DSM 43255 2.3.1.2.25.1.1712 OTU 17 seqs prokMSA_id:13543 Z37138.1 Tsukamurella wratislaviensis prokMSA_id:13544 AJ002749.1 Rhodococcus sp. str. GW-86a prokMSA_id:13545 AF124342.1 Rhodococcus koreensis str. DNP505 prokMSA_id:13547 Y11893.1 Rhodococcus opacus str. 1CP prokMSA_id:13548 Y11892.1 Rhodococcus opacus str. GM-29 prokMSA_id:13549 AF095715.1 Rhodococcus opacus str. M213 prokMSA_id:13560 X80631.1 Rhodococcus opacus prokMSA_id:13563 AF124343.1 Rhodococcus koreensis str. DNP505 prokMSA_id:13572 X89710.1 Rhodococcus opacus prokMSA_id:13573 X80630.1 Rhodococcus opacus prokMSA_id:37637 AB032565.1 Rhodococcus opacus str. SAO101 prokMSA_id:70376 AF435009.1 Rhodococcus opacus str. HL PM-1 prokMSA_id:75621 AY027583.1 Rhodococcus opacus str. CB 24-1 prokMSA_id:75703 AY027585.1 Rhodococcus opacus str. DNP14-5 prokMSA_id:76475 AY027584.1 Rhodococcus opacus str. HL 24-1 prokMSA_id:76659 AY027586.1 Rhodococcus opacus str. DNP14-9 prokMSA_id:78547 AY177354.2 Rhodococcus sp. str. I7 2.3.1.2.25.1.1746 OTU 8 seqs prokMSA_id:13523 X80615.1 Nocardia corynebacteroides prokMSA_id:13524 Y07813.1 Nocardia corynebacterioides str. CIP 104291 prokMSA_id:13525 Y07849.1 Nocardia corynebacterioides str. CIP 104294 prokMSA_id:32826 AF356016.1 hydrothermal waters isolate str. NZ2 prokMSA_id:75616 AY157677.1 Nocardia corynebacterioides str. QBTo prokMSA_id:81710 AF430066.1 Nocardia corynebacterioides str. DSM 20151 prokMSA_id:100437 AY438619.1 Nocardia corynebacterioides str. NRRL 21057 prokMSA_id:103474 AY726605.1 Rhodococcus spitiensis str. K-07-23 2.3.1.2.25.1.1769 OTU 1 seq prokMSA_id:82059 AF430064.1 Nocardia sp. str. DSM 46067 2.3.1.2.25.1.1778 OTU 6 seqs prokMSA_id:13571 X81933.1 Rhodococcus marinonascens prokMSA_id:13574 X80617.1 Rhodococcus marinonascens prokMSA_id:42265 AB044557.1 Rhodococcus sp. PN1 prokMSA_id:43639 AF416566.1 Rhodococcus maanshanensis str. M712 prokMSA_id:62436 AB067734.1 Rhodococcus tukisamuensis str. Mb8 prokMSA_id:72226 AB046357.1 Rhodococcus jostii str. IFO16295 2.3.1.2.25.1.1787 OTU 2 seqs prokMSA_id:13622 AB024312.1 Nocardia vinacea str. MK703-102F1 prokMSA_id:82429 AF430046.1 Nocardia pseudovaccinii str. DSM 43406 2.3.1.2.25.1.1788 OTU 1 seq prokMSA_id:13541 U20791.1 Rhodococcus species 2.3.1.2.25.1.1805 OTU 5 seqs prokMSA_id:22010 AF277207.1 Nocardia sp. str. W148 prokMSA_id:22063 AF277203.1 Nocardia sp. str. S24 prokMSA_id:37262 AF277218.1 Nocardia sp. str. R86 prokMSA_id:47624 AF277222.1 Nocardia sp. str. R133 prokMSA_id:54743 AJ303008.1 Nocardia ignorata str. IMMIB R-1434 DSM 44496 = NRRL B-24141 2.3.1.2.25.1.1809 OTU 1 seq prokMSA_id:37109 AF468521.1 Rhodococcus sp. str. DK17 2.3.1.2.25.1.1834 OTU 8 seqs prokMSA_id:13602 X80598.1 Nocardia transvalensis prokMSA_id:13638 Z36926.1 Nocardia transvalensis prokMSA_id:13639 X80609.1 Nocardia transvalensis prokMSA_id:22413 Z82232.1 Nocardia transvalensis str. N1045 prokMSA_id:34077 Z82240.1 Nocardia transvalensis str. N630 prokMSA_id:82063 AF430047.1 Nocardia transvalensis str. DSM 43405 prokMSA_id:92185 AB084448.1 Nocardia transvalensis str. IFM 10065 prokMSA_id:92434 AB084447.1 Nocardia transvalensis str. IFM 0998 2.3.1.2.25.1.1861 OTU 1 seq prokMSA_id:20961 AF439261.1 Rhodococcus rhodochrous str. 11Y 2.3.1.2.25.1.1917 OTU 23 seqs prokMSA_id:13604 X80610.1 Nocardia farcinica prokMSA_id:13608 X80611.1 Nocardia otitidiscaviarum prokMSA_id:13609 AF154129.1 Nocardia beijingensis str. AS4.1521T prokMSA_id:13610 X91041.1 Nocardia farcinica str. GD1 prokMSA_id:13611 AJ131211.1 Nocardia farcinica prokMSA_id:13619 Z36936.1 Nocardia farcinica prokMSA_id:13627 X84851.1 Nocardia asteroides prokMSA_id:29160 Z82228.1 Nocardia asteroides str. N488 prokMSA_id:40151 Z82227.1 Nocardia asteroides str. N450 prokMSA_id:43592 Z82235.1 Nocardia transvalensis str. N1080 prokMSA_id:48062 Z82236.1 Nocardia transvalensis str. N1082 prokMSA_id:48486 Z82221.1 Nocardia asteroides str. N206 prokMSA_id:50336 Z82233.1 Nocardia transvalensis str. N1408 prokMSA_id:75323 AB092570.1 Nocardia asiatica str. IFM 0860 prokMSA_id:75424 AB092568.1 Nocardia asiatica str. IFM 0425 prokMSA_id:76153 AB092566.1 Nocardia asiatica str. IFM 0245 prokMSA_id:79112 AY155203.1 Nocardia sp. str. ATCC 49872 prokMSA_id:81174 AF430025.1 Nocardia asteroides str. DSM 43258 prokMSA_id:81217 AF430033.1 Nocardia farcinica str. DSM 43665 prokMSA_id:82387 AF430034.1 Nocardia farcinica str. S560 prokMSA_id:84366 AY222321.1 Nocardia alba str. YIM 30243 prokMSA_id:84484 AB097453.1 Nocardia puris str. IFM 0299 prokMSA_id:86269 AJ508748.1 Nocardia puris str. IMMIB R-145 = DSM 44599 2.3.1.2.25.1.1927 OTU 5 seqs prokMSA_id:13603 Z36928.1 Nocardia brevicatena prokMSA_id:13641 X80600.1 Nocardia brevicatena prokMSA_id:25440 AF179865.1 Nocardia paucivorans str. D-1632T prokMSA_id:81432 AF430040.1 Nocardia brevicatena str. DSM 43024 prokMSA_id:82341 AF430041.1 Nocardia paucivorans str. DSM 44386 2.3.1.2.25.1.1940 OTU 38 seqs prokMSA_id:13508 AB010902.1 Rhodococcus sp. str. IBT2679-024 JC24 prokMSA_id:13512 X81921.1 Rhodococcus rhodochrous prokMSA_id:13513 X80624.1 Rhodococcus roseus prokMSA_id:13514 AJ007002.1 Rhodococcus sp. LC1 prokMSA_id:13516 X81936.1 Rhodococcus rhodochrous prokMSA_id:13517 X79288.1 Rhodococcus rhodochrous prokMSA_id:13527 U16317.1 Rhodococcus sp. str. RHA4 prokMSA_id:13546 AB023374.1 Rhodococcus sp. IFO16253 str. IFO 16253 prokMSA_id:23734 AF173005.1 Rhodococcus pyridinivorans str. PDB9 prokMSA_id:43203 D87092.1 Rhodococcus sp. str. HA99 prokMSA_id:54731 AF459741.1 Rhodococcus pyridinivorans str. R04 prokMSA_id:55435 AY090021.1 Rhodococcus sp. str. PNAN 5 prokMSA_id:55547 AJ457068.1 Rhodococcus sp. str. PA prokMSA_id:64670 AF420423.1 Rhodococcus sp. str. ARG-BN062 prokMSA_id:65225 AF512840.1 Rhodococcus rhodnii prokMSA_id:82133 AY233201.1 Rhodococcus gordoniae str. W4937 prokMSA_id:82199 AY233202.1 Rhodococcus gordoniae str. MTCC 1534 prokMSA_id:83971 AB087282.1 Rhodococcus sp. str. -22 prokMSA_id:87677 AY286493.1 Rhodococcus sp. str. T104 prokMSA_id:100867 AB183422.1 Rhodococcus rhodochrous str. MFC-B prokMSA_id:101200 AY436807.1 Rhodococcus sp. str. RD6.2 prokMSA_id:101712 AJ786666.1 J3 prokMSA_id:105495 AY533293.1 Rhodococcus phenolicus str. G2P prokMSA_id:107813 AY426699.1 Rhodococcus sp. str. NCIMB12038 prokMSA_id:108218 AY785730.1 Rhodococcus sp. OUCZ16 prokMSA_id:108228 AY785739.1 Rhodococcus wratislaviensis OUCZ48 prokMSA_id:108230 AY785742.1 Rhodococcus wratislaviensis OUCZ59 prokMSA_id:108251 AY771328.1 Gordonia rubripertincta str. ATCC 21930 prokMSA_id:108400 AB178563.1 Rhodococcus opacus str. B-4 prokMSA_id:108401 AB178565.1 Rhodococcus opacus str. B-10 prokMSA_id:108811 AJ854055.1 Rhodococcus triatomae str. IMMIB RIV-085 prokMSA_id:108812 AJ854056.1 Rhodococcus triatomae str. IMMIB RIV-095 prokMSA_id:109985 AJ843244.1 Rhodococcus opacus 789 prokMSA_id:112287 AY234735.1 soil isolate Ellin6083 prokMSA_id:113330 AY927229.1 Rhodococcus sp. str. MOP100 prokMSA_id:113371 AY940038.1 Rhodococcus wratislaviensis str. J7; CCM 7242 prokMSA_id:113538 AY921766.1 farm soil adjacent to silage storage bunker clone AKYH745 prokMSA_id:113695 AY940037.1 Rhodococcus wratislaviensis str. C6-1; CCM 7084 2.3.1.2.25.1.1948 OTU 1 seq prokMSA_id:40439 AF277223.1 Nocardia soli str. W30 2.3.1.2.25.1.1999 OTU 41 seqs prokMSA_id:13577 X79187.1 Rhodococcus luteus prokMSA_id:13578 X81932.1 Rhodococcus fascians prokMSA_id:13580 X79186.1 Rhodococcus fascians prokMSA_id:13581 Y11196.1 Rhodococcus fascians str. D188 prokMSA_id:13582 AF181689.1 Rhodococcus sp. str. 5/1 prokMSA_id:13583 AF181690.1 Rhodococcus sp. str. 5/14 prokMSA_id:13584 AB010907.1 Rhodococcus sp. str. SGB1168-116 JoyP prokMSA_id:13585 AB010908.1 Rhodococcus sp. str. SGB1168-118 Joyb prokMSA_id:13586 AB010913.1 Rhodococcus sp. str. SRB1948-Z40 JoyN prokMSA_id:13587 X81930.1 Rhodococcus fascians prokMSA_id:18740 AF260713.1 Rhodococcus sp. str. S9 prokMSA_id:35057 AF205371.1 Rhodococcus fascians str. QSSC2-1 prokMSA_id:37131 AJ011329.1 Rhodococcus fascians KM6 prokMSA_id:42627 AF235011.1 Rhodococcus sp. UFZ-B520 prokMSA_id:57898 AF544369.1 deep sea sediments clone prokMSA_id:57900 AF544366.1 deep sea sediments clone prokMSA_id:57909 AF544355.1 deep sea sediments clone prokMSA_id:57917 AF544345.1 deep sea sediments clone prokMSA_id:57923 AF544338.1 deep sea sediments clone prokMSA_id:59542 AF538745.1 municipal wastewater treatment bioreactor isolate str. CAGY6 prokMSA_id:61955 AJ244659.2 Rhodococcus sp. str. V4.ME.27 = MM_2341 prokMSA_id:65222 AB070471.1 Rhodococcus sp. str. YK9 prokMSA_id:65243 AB070458.1 Rhodococcus sp. str. YK2 prokMSA_id:70020 AJ293818.1 Antarctic seawater isolate str. R7241 prokMSA_id:70233 AJ278779.1 Arctic seawater isolate str. R7212 prokMSA_id:70795 AJ295711.1 Antarctic seawater isolate str. R7704 prokMSA_id:73382 AJ293819.1 Arctic seawater isolate str. R7851 prokMSA_id:79369 AB088667.1 Rhodococcus sp. MBIC01430 str. MBIC 01430 prokMSA_id:80384 AY189683.1 Rhodococcus sp. str. P_wp0223 prokMSA_id:80394 AY188941.1 Rhodococcus sp. str. P_wp0233 prokMSA_id:89578 AJ576249.1 Rhodococcus fascians 7Y prokMSA_id:96788 AY395020.1 Rhodococcus sp. NAB16 prokMSA_id:99518 AB180236.1 Rhodococcus fascians str. DFA7 prokMSA_id:102103 AY316681.1 Rhodococcus sp. E60 prokMSA_id:103539 AB177884.1 Rhodococcus sp. str. NSA3-1 prokMSA_id:104299 AY512642.1 Rhodococcus sp. str. A1XB1-5 prokMSA_id:106390 AY730713.1 Rhodococcus fascians str. 130804IB3 prokMSA_id:107421 AY582940.1 Rhodococcus sp. str. D48 prokMSA_id:108610 AY745830.1 Rhodococcus sp. str. JL-60 prokMSA_id:108611 AY745831.1 Rhodococcus sp. str. NPO-JL-61 prokMSA_id:108743 AY602219.2 Rhodococcus yunnanensis str. YIM 70056 2.3.1.2.25.1.2048 OTU 16 seqs prokMSA_id:13637 Z46752.1 Nocardia uniformis str. JCM 3224 prokMSA_id:21724 Z82231.1 Nocardia asteroides str. N569 prokMSA_id:36906 AY036053.1 Nocardia novocastrensa str. N1251 prokMSA_id:66022 AF380936.1 Nocardia seriolae str. NA2 prokMSA_id:74674 AF219974.1 Nocardia pigrifrangens str. 7031 prokMSA_id:81184 AF430044.1 Nocardia uniformis str. DSM 43136 prokMSA_id:81660 AF430056.1 Nocardia sp. str. DSM 43301 prokMSA_id:81707 AF430057.1 Nocardia sp. str. DSM 43395 prokMSA_id:81999 AF430024.1 Nocardia sp. str. DSM 43260 prokMSA_id:84646 AJ556157.1 Nocardia tenerifensis prokMSA_id:90115 AY282603.1 Nocardia neocaledoniensis str. SBHR OA6 prokMSA_id:98986 AB121770.1 Nocardia sienata str. IFM 10088 prokMSA_id:100600 AY626158.1 Nocardia sp. YIM 33361 str. YIM33361 prokMSA_id:101264 AB162794.1 Nocardia farcinica str. IFM 0931 prokMSA_id:111743 AY524861.1 Nocardia sp. str. I7 prokMSA_id:111954 AB187522.1 Nocardia sp. str. IFM 0803 2.3.1.2.25.1.2052 OTU 4 seqs prokMSA_id:13631 X80608.1 Nocardia brasiliensis prokMSA_id:13640 Z36935.1 Nocardia brasiliensis prokMSA_id:81612 AF430038.1 Nocardia brasiliensis str. DSM 43758 prokMSA_id:83250 AY245543.1 Nocardia brasiliensis 2.3.1.2.25.2 sf_2 1 seq 2.3.1.2.25.2.6327 OTU 1 seq prokMSA_id:38224 AF224815.1 clone Car89fb 2.3.1.2.26 Nocardioidaceae 59 seqs 2.3.1.2.26.1 sf_1 59 seqs 2.3.1.2.26.1.1208 OTU 5 seqs prokMSA_id:12756 Z78209.1 Aeromicrobium fastidiosum str. DSM 10552T prokMSA_id:12757 X76179.1 Nocardioides species prokMSA_id:12758 X76178.1 Nocardioides sp. NCFB 3005 prokMSA_id:12760 AF005021.1 Aeromicrobium erythreum str. NRRL B-3381 prokMSA_id:39886 AF005022.1 Aeromicrobium fastidiosum str. KCTC 9576 2.3.1.2.26.1.1254 OTU 1 seq prokMSA_id:34725 AJ316318.1 Nocardioides sp. str. LMG 20237 2.3.1.2.26.1.1269 OTU 1 seq prokMSA_id:44269 AF253509.1 Nocardioides sp. str. C157 2.3.1.2.26.1.1328 OTU 2 seqs prokMSA_id:12761 AF005008.1 Nocardioides plantarum str. NCIMB 12834 prokMSA_id:12788 Z78211.1 Nocardioides plantarum str. DSM 11054T 2.3.1.2.26.1.1364 OTU 1 seq prokMSA_id:12770 U27857.1 picric acid degrading consortium clone Nb 2.3.1.2.26.1.1423 OTU 26 seqs prokMSA_id:12789 AF004988.1 Nocardioides albus str. KCTC 9186 prokMSA_id:12793 X86617.1 Nocardioides sp. str. 15-59 prokMSA_id:12794 X86618.1 Acinetobacter sp. prokMSA_id:12795 X86619.1 Nocardioides sp. str. 80-80 prokMSA_id:12796 X86620.1 Nocardioides sp. str. 80-83 prokMSA_id:23823 AF005007.1 Nocardioides luteus str. KCTC 9575 prokMSA_id:24003 AF004989.1 Nocardioides albus str. JCM 5851 prokMSA_id:25935 AF005004.1 Nocardioides albus str. DSM 43873 prokMSA_id:26246 AF004996.1 Nocardioides albus str. JCM 5858 prokMSA_id:27416 AF004992.1 Nocardioides albus str. JCM 5854 prokMSA_id:29505 AF004993.1 Nocardioides albus str. JCM 5855 prokMSA_id:31018 AF004999.1 Nocardioides albus str. JCM 5860 prokMSA_id:34255 AF004995.1 Nocardioides albus str. JCM 5857 prokMSA_id:35067 AF004997.1 Nocardioides albus str. DSM 46107 prokMSA_id:35182 AF004991.1 Nocardioides albus str. JCM 5853 prokMSA_id:38492 AF005000.1 Nocardioides albus str. JCM 5861 prokMSA_id:38858 AF004998.1 Nocardioides albus str. JCM 5859 prokMSA_id:43015 AF005002.1 Nocardioides albus str. JCM 5863 prokMSA_id:44064 AF005015.1 Nocardioides flavus str. IFO 14397 prokMSA_id:44488 AF005003.1 Nocardioides albus str. JCM 5864 prokMSA_id:45362 AF005014.1 Nocardioides flavus prokMSA_id:45925 AF005001.1 Nocardioides albus str. JCM 5862 prokMSA_id:46696 AF005016.1 Nocardioides fulvus prokMSA_id:48672 AF005005.1 Nocardioides albus str. DSM 43874 prokMSA_id:74487 AF004994.1 Nocardioides albus str. JCM 5856 prokMSA_id:74703 AF004990.1 Nocardioides albus str. JCM 5852 2.3.1.2.26.1.1426 OTU 1 seq prokMSA_id:82319 AJ549286.1 Nocardioides sp. str. NS/27 2.3.1.2.26.1.1602 OTU 1 seq prokMSA_id:26274 AJ007645.1 404-2 clone 404-2 2.3.1.2.26.1.1623 OTU 1 seq prokMSA_id:31964 AB078817.1 Propionicimonas paludicola str. K2 2.3.1.2.26.1.1699 OTU 14 seqs prokMSA_id:12768 U61298.1 Nocardioides sp. OS4 prokMSA_id:12776 AJ009714.2 contaminated groundwater isolate K44 prokMSA_id:12785 Z78210.1 Nocardioides jensenii str. DSM 20641T prokMSA_id:21031 AF465213.1 Nocardioides sp. str. JS884 prokMSA_id:52736 AF253510.1 Nocardioides sp. str. C190 prokMSA_id:60763 AF498652.1 Nocardioides sp. str. JS614 prokMSA_id:60989 AF529063.1 Nocardioides aquiterrae str. GW-9 prokMSA_id:61957 AJ244657.2 Nocardioides sp. str. V4.BE.17 = MM_2350 prokMSA_id:68739 AF479362.1 glacial ice isolate str. SB12K-2-4 prokMSA_id:74690 AF005006.1 Nocardioides jensenii str. KCTC 9134 prokMSA_id:77309 AY167844.1 Nocardioides fulvus str. SAFR-045 prokMSA_id:77501 AY167855.1 Nocardioides fulvus str. SAFR-005 prokMSA_id:77979 AB074621.1 actinobacterium clone:APe4_47 clone APe4_47 prokMSA_id:82135 AJ549287.1 Nocardioides sp. str. NS/33 2.3.1.2.26.1.1796 OTU 1 seq prokMSA_id:75390 AY027587.1 Nocardioides sp. str. 4P1- 2.3.1.2.26.1.1823 OTU 2 seqs prokMSA_id:12762 X90830.1 Nocardioides sp. str. EL-17 lawson prokMSA_id:12763 X94145.1 Nocardioides sp 2.3.1.2.26.1.1854 OTU 1 seq prokMSA_id:84596 AY166703.1 Aeromicrobium marinum str. T2 2.3.1.2.26.1.1905 OTU 1 seq prokMSA_id:32247 Y18629.1 Marmoricola aurantiacus str. BC361 2.3.1.2.26.1.2005 OTU 1 seq prokMSA_id:61958 AJ244655.3 Nocardioides sp. str. V4.BO.15 = MM_2364 2.3.1.2.27 Nocardiopsaceae 53 seqs 2.3.1.2.27.1 sf_1 53 seqs 2.3.1.2.27.1.1194 OTU 2 seqs prokMSA_id:25615 AF251709.1 Nocardiopsis xinjiangensis prokMSA_id:68398 AY082064.1 Nocardiopsis sp. YIM 90006 str. YIM90006 2.3.1.2.27.1.1385 OTU 14 seqs prokMSA_id:11972 AF178988.1 Streptomonospora salina str. YIM90002 prokMSA_id:11974 X87313.1 Actinomycetaceae SR 210 prokMSA_id:44196 AF462347.1 Streptomonospora alba str. YIM90003 prokMSA_id:53459 AF195412.1 Nocardiopsis kunsanensis str. HA-9T; KCTC 9831T prokMSA_id:67689 AF360734.1 Nocardiopsis composta str. KS9 prokMSA_id:67690 AF360733.1 Nocardiopsis composta str. KS8 prokMSA_id:68396 AY082066.1 Nocardiopsis sp. YIM 90014 str. YIM90014 prokMSA_id:68397 AY082065.1 Nocardiopsis sp. YIM 90009 str. YIM90009 prokMSA_id:88578 AY297774.1 Nocardiopsis sp. str. 10002 prokMSA_id:91978 AY336515.1 Nocardiopsis sp. str. 10063 prokMSA_id:94921 AY373031.1 Nocardiopsis salina str. YIM 90010 prokMSA_id:100646 AY619712.1 Nocardiopsis flavoviridis str. YIM 90087 prokMSA_id:101126 AY619715.1 Nocardiopsis chromogenes str. YIM 90109 prokMSA_id:101284 AY619716.1 Nocardiopsis baichengensis str. YIM 90130 2.3.1.2.27.1.1458 OTU 4 seqs prokMSA_id:63691 AF361322.1 Nocardiopsis sp. str. 99-08-186A prokMSA_id:63697 AF328410.1 Nocardiopsis sp. str. 99-20-007A prokMSA_id:63702 AF328409.1 Nocardiopsis sp. str. 99-21-444A prokMSA_id:63704 AF328401.1 Nocardiopsis sp. str. 97-38-018A 2.3.1.2.27.1.1467 OTU 1 seq prokMSA_id:52732 AJ298058.1 Thermobifida cellulosilytica str. TB100 2.3.1.2.27.1.1520 OTU 3 seqs prokMSA_id:11968 AF028245.1 Thermobifida fusca prokMSA_id:11970 AF002264.1 Thermobifida fusca str. ATCC 27730 prokMSA_id:32820 AB006171.1 Thermobifida fusca str. IFO 14071 2.3.1.2.27.1.1894 OTU 1 seq prokMSA_id:41061 AJ421018.1 Nocardiopsis halophila str. DSM 44494T 2.3.1.2.27.1.1991 OTU 28 seqs prokMSA_id:11971 X97882.1 Nocardiopsis dassonvillei subsp. albirubida str. DSM 40465T subsp. prokMSA_id:11973 X97885.1 Nocardiopsis dassonvillei str. DSM 43884T prokMSA_id:11975 Y13593.1 DSM 44143 prokMSA_id:11976 X97886.1 Nocardiopsis dassonvillei prokMSA_id:11977 D85492.1 Nocardiopsis dassonvillei str. IFO14626 prokMSA_id:11978 X97888.1 Nocardiopsis lucentensis str. DSM 44048T prokMSA_id:11979 X97883.1 Nocardiopsis alba str. DSM 43377T prokMSA_id:11980 Y07678.1 Prauseria hordei SH261 prokMSA_id:11981 Y07680.1 Prauseria hordei SH82 prokMSA_id:11982 X97887.1 Nocardiopsis listeri str. DSM 40297T prokMSA_id:11983 X97884.1 Nocardiopsis alba str. DSM 43845T prokMSA_id:23374 AF479269.1 Nocardiopsis dassonvillei str. 823 prokMSA_id:23931 AY036002.1 Nocardiopsis sp. str. 123 prokMSA_id:24444 AJ290448.1 Nocardiopsis halotolerans str. DSM 44410 prokMSA_id:26617 AY036001.1 Nocardiopsis umidischolae str. 66/93 prokMSA_id:30188 AY036000.1 Nocardiopsis exhalans str. ES10.1 prokMSA_id:33658 AY036003.1 Nocardiopsis sp. str. 704a prokMSA_id:35537 AY028325.1 Nocardiopsis sp. str. ES10.1 prokMSA_id:41607 AF105971.1 Nocardiopsis tropica prokMSA_id:44792 AJ420769.1 Nocardiopsis metallicus str. R2A prokMSA_id:47196 AY030320.1 Nocardiopsis dassonvillei str. JPL-3 prokMSA_id:52175 AY027776.1 Nocardiopsis alba prokMSA_id:55246 AF540000.2 Nocardiopsis tangguensis str. CCRC 16303 D3615 prokMSA_id:55606 AY117435.1 Nocardiopsis viridoflava str. T64 prokMSA_id:60273 AY129814.1 cave clone GCPF48 prokMSA_id:67687 AF360735.1 Nocardiopsis alba str. KS21 prokMSA_id:79107 AJ539401.1 Nocardiopsis aegyptia str. DSM 44442 prokMSA_id:83383 AY230848.1 Nocardiopsis alkaliphila str. DSM44657T; CCTCC AA00103T 2.3.1.2.28 Promicromonosporaceae 16 seqs 2.3.1.2.28.1 sf_1 16 seqs 2.3.1.2.28.1.1101 OTU 1 seq prokMSA_id:39609 AF131479.1 Promicromonospora sp. IM-0635 str. IM 0635 2.3.1.2.28.1.1671 OTU 10 seqs prokMSA_id:12301 X79455.1 Cellulosimicrobium cellulans str. DSM 43879 prokMSA_id:12303 AB023355.1 Cellulosimicrobium cellulans str. IFO 16148 prokMSA_id:12309 X79453.1 Cellulosimicrobium cellulans str. NCIMB 11025 prokMSA_id:12335 X83809.1 Cellulomonas cellulans prokMSA_id:26533 AJ313025.1 Cellulomonas sp. MN 60.3 prokMSA_id:41760 AF306540.1 Cellulosimicrobium cellulans str. DOT13 prokMSA_id:55343 AY114178.1 Cellulosimicrobium cellulans str. AS 4.1333 prokMSA_id:73058 AB056131.1 Promicromonospora sp. str. IFO 16225 prokMSA_id:77900 AB098580.1 Cellulosimicrobium cellulans str. TUT1012 prokMSA_id:84538 AF500208.1 Cellulomonas sp. str. CJ10597 2.3.1.2.28.1.1711 OTU 5 seqs prokMSA_id:12311 AF060791.1 Cellulomonas sp. str. X7 prokMSA_id:12313 AB023353.1 Promicromonospora sukumoe str. IFO 15062 prokMSA_id:12314 AB023375.1 Promicromonospora sukumoe str. IFO 14650T prokMSA_id:22867 AJ272024.1 Promicromonospora sukumoe str. DSM 44121 prokMSA_id:71309 AB056130.1 Promicromonospora sukumoe str. IFO 14650 2.3.1.2.29 Propionibacteriaceae 98 seqs 2.3.1.2.29.1 sf_1 98 seqs 2.3.1.2.29.1.1152 OTU 1 seq prokMSA_id:73295 AF287756.1 Propionibacterium sp. oral strain str. FMA5 oral 2.3.1.2.29.1.1291 OTU 1 seq prokMSA_id:49248 AF234623.1 Propionibacterium microaerophilum str. M5 2.3.1.2.29.1.1306 OTU 1 seq prokMSA_id:12751 AB012607.1 Micropruina glycogenica str. Lg2 2.3.1.2.29.1.1315 OTU 2 seqs prokMSA_id:12743 AF084529.1 Friedmanniella capsulata str. Ben 108; J47; ACM 5120 prokMSA_id:47043 AJ132943.1 Friedmanniella lacustris str. EL-17a 2.3.1.2.29.1.1371 OTU 2 seqs prokMSA_id:12724 AJ003057.1 Propionibacterium granulosum str. DSM 20700 prokMSA_id:33816 AY053481.1 gas hydrate clone AT425_EubA8 2.3.1.2.29.1.1682 OTU 5 seqs prokMSA_id:19175 AB078820.1 Propionicimonas paludicola str. K5 prokMSA_id:23881 AB078835.1 Propionicimonas paludicola str. W1 prokMSA_id:47074 AB078858.2 Propionicimonas paludicola str. Wd prokMSA_id:49459 AB078859.2 Propionicimonas paludicola str. Wf prokMSA_id:68737 AF479364.1 glacial ice isolate str. SB12K-2-7 2.3.1.2.29.1.1715 OTU 3 seqs prokMSA_id:12727 Y10819.1 Propionibacterium freudenreichii subsp. shermanii str. DSM 4902 prokMSA_id:12729 AJ009989.1 Propionibacterium freudenreichii subsp. globosum JS53 prokMSA_id:112361 AY533300.1 Propionibacterium freudenreichii 2.3.1.2.29.1.1777 OTU 2 seqs prokMSA_id:12741 Z78206.1 Friedmanniella antarctica prokMSA_id:12742 AF062535.1 Friedmanniella spumicola 2.3.1.2.29.1.1808 OTU 1 seq prokMSA_id:12728 D82046.2 Propionibacterium cyclohexanicum 2.3.1.2.29.1.1842 OTU 4 seqs prokMSA_id:12753 AJ229243.1 Actinobacteria str. VeSm15 prokMSA_id:22433 U78941.1 d marine isolate clone R2A170 prokMSA_id:72755 AY149469.1 petroleum-contaminated sandy soil clone LTUGr00156 prokMSA_id:82323 AY211075.1 anaerobic VC-degrading enrichment clone VC20 2.3.1.2.29.1.1850 OTU 1 seq prokMSA_id:12733 AF038504.1 Tessaracoccus bendigoensis str. Ben106 (ACM 5119) 2.3.1.2.29.1.1865 OTU 1 seq prokMSA_id:12734 AJ003056.1 Propionimicrobium lymphophilum str. DSM 4903 2.3.1.2.29.1.1877 OTU 1 seq prokMSA_id:12738 D21245.1 Luteococcus japonicus str. IFO12422 2.3.1.2.29.1.1981 OTU 1 seq prokMSA_id:23815 AF225962.1 Propionibacterium australiense str. LCDC-98A072 2.3.1.2.29.1.2002 OTU 69 seqs prokMSA_id:12709 AF145256.1 Propionibacterium acnes str. 63597 prokMSA_id:12710 AF146370.1 Propionibacterium acnes str. 76995 prokMSA_id:12711 AF154832.1 Propionibacterium acnes str. MZ 169082 prokMSA_id:12712 Y12288.1 Propionibacterium acnes str. LIP4 prokMSA_id:12713 AF154099.1 hydrocarbon seep clone BPC009 prokMSA_id:12714 AF076032.1 Propionibacterium acnes prokMSA_id:16987 AB042289.1 Propionibacterium acnes #7168 prokMSA_id:17399 AB041617.3 Propionibacterium acnes #1447 prokMSA_id:18812 AB042291.1 Propionibacterium acnes #8261 prokMSA_id:20375 AF290481.1 cf. Propionibacterium acnes clone Llangefni 35 mite prokMSA_id:23665 AB042286.1 Propionibacterium acnes 0432 prokMSA_id:25486 AJ309523.1 brine-seawater interface clone KT-2K12 bacterium prokMSA_id:26332 AB042287.1 Propionibacterium acnes #4584 prokMSA_id:26462 AB041618.3 Propionibacterium acnes #3004 prokMSA_id:29154 AB042290.1 Propionibacterium acnes #7375 prokMSA_id:32473 AB042288.1 Propionibacterium acnes prokMSA_id:34150 Z73442.1 Boom-3m-08 prokMSA_id:37223 AF290482.1 cf. Propionibacterium acnes clone Llangefni 57 mite prokMSA_id:37428 AB078819.1 Propionibacteriaceae str. K4 prokMSA_id:43212 AJ309527.1 brine-seawater interface clone KT-2K38 bacterium prokMSA_id:62481 AF513962.1 Propionibacterineae clone PH-B24N prokMSA_id:66602 AY096033.1 Propionibacterium sp. str. WJ6 prokMSA_id:70065 AF419680.1 hydrothermal vent sediment clone a2b011 prokMSA_id:75115 AY154545.1 earthworm intestine clone lw29 prokMSA_id:75387 AB097215.1 Propionibacterium acnes str. IFM10239 prokMSA_id:78295 AB074624.1 actinobacterium clone:APe2_6 clone APe2_6 prokMSA_id:82570 AB108480.1 Propionibacterium acnes #5317 prokMSA_id:83144 AB108484.1 Propionibacterium acnes #2929 prokMSA_id:83740 AB108483.1 Propionibacterium acnes #1003 prokMSA_id:85076 AB108479.1 Propionibacterium acnes #6119 prokMSA_id:85285 AB108482.1 Propionibacterium acnes #5255 prokMSA_id:85289 AB108481.1 Propionibacterium acnes #8800 prokMSA_id:86231 AB108477.1 Propionibacterium acnes #8644 prokMSA_id:88922 AF443577.1 cells extracted semiarid soil clone O-F-20 prokMSA_id:89757 AF443576.1 cells extracted semiarid soil clone O-F-15 prokMSA_id:92471 AY354921.1 Propionibacterium sp. str. LG prokMSA_id:93056 AY343975.1 Propionibacterium acnes prokMSA_id:99456 AB128885.1 deep marine sediments Nankai Trough Japan; ODP Leg 190 clone 1174-901-5 prokMSA_id:101556 AE017283.1 Propionibacterium acnes str. KPA171202 prokMSA_id:108020 NC_006085.1 Propionibacterium acnes KPA171202 prokMSA_id:108757 AY796038.1 gold mine bore hole clone 47mm60 prokMSA_id:108877 AB193919.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM263-NB10 prokMSA_id:109353 AY838468.1 fruiting body Pleurotus eryngii clone PE12 prokMSA_id:109354 AY838469.1 fruiting body Pleurotus eryngii clone PE13 prokMSA_id:109355 AY838471.1 fruiting body Pleurotus eryngii clone PE15 prokMSA_id:109361 AY838477.1 fruiting body Pleurotus eryngii clone PE21 prokMSA_id:109362 AY838476.1 fruiting body Pleurotus eryngii clone PE20 prokMSA_id:109363 AY838478.1 fruiting body Pleurotus eryngii clone PE22 prokMSA_id:109368 AY838483.1 fruiting body Pleurotus eryngii clone PE27 prokMSA_id:109371 AY838486.1 fruiting body Pleurotus eryngii clone PE30 prokMSA_id:109374 AY838489.1 fruiting body Pleurotus eryngii clone PE33 prokMSA_id:109375 AY838490.1 fruiting body Pleurotus eryngii clone PE34 prokMSA_id:109377 AY838492.1 fruiting body Pleurotus eryngii clone PE36 prokMSA_id:109380 AY838495.1 fruiting body Pleurotus eryngii clone PE40 prokMSA_id:109543 AY642041.1 Propionibacterium acnes PV66 prokMSA_id:109669 AY642049.1 Propionibacterium acnes LED2 prokMSA_id:109681 AY642045.1 Propionibacterium acnes SG2 prokMSA_id:109875 AY642053.1 Propionibacterium acnes JPIB prokMSA_id:109882 AY642046.1 Propionibacterium acnes P24 prokMSA_id:110277 AY642048.1 Propionibacterium acnes AT1 prokMSA_id:110309 AY642042.1 Propionibacterium acnes L1958 prokMSA_id:110336 AY642047.1 Propionibacterium acnes RM4 prokMSA_id:110436 AY642043.1 Propionibacterium acnes PV93 prokMSA_id:110494 AY642052.1 Propionibacterium acnes ED2 prokMSA_id:110692 AY642054.1 Propionibacterium acnes WD1 prokMSA_id:110877 AY770697.1 actinobacterium sea squirt Microcosmus sp. clone MspS111 prokMSA_id:110978 AY642050.1 Propionibacterium acnes RM9 prokMSA_id:111283 AY642051.1 Propionibacterium acnes W1392 prokMSA_id:111305 AY642044.1 Propionibacterium acnes str. NCTC 10390 2.3.1.2.29.1.2023 OTU 3 seqs prokMSA_id:17374 AF285117.1 Propionibacterium propionicum VA1535_00 prokMSA_id:18155 AJ315953.1 Propionibacterium propionicum str. DSM 43307T prokMSA_id:19216 AF287757.1 human subgingival plaque clone BN085 2.3.1.2.3 Actinosynnemataceae 24 seqs 2.3.1.2.3.1 sf_1 24 seqs 2.3.1.2.3.1.1125 OTU 4 seqs prokMSA_id:12979 AF114797.1 Actinokineospora diospyrosa str. NRRL B-24047T prokMSA_id:12996 AF114798.1 Actinokineospora globicatena str. NRRL B-24048T prokMSA_id:35192 AB048863.1 Actinokineospora sp. str. YU 873-1 prokMSA_id:40462 AB058394.1 Actinokineospora terrae str. IFO 15668 2.3.1.2.3.1.1126 OTU 1 seq prokMSA_id:12986 D85475.1 Actinosynnema mirum str. IFO14064 2.3.1.2.3.1.1167 OTU 1 seq prokMSA_id:33829 AB058395.1 Actinokineospora enzanensis str. IFO 16517 2.3.1.2.3.1.1249 OTU 1 seq prokMSA_id:47825 AB048864.1 Actinokineospora sp. str. YU 923-201 2.3.1.2.3.1.1463 OTU 10 seqs prokMSA_id:12958 AF114811.1 Saccharothrix sp. str. NRRL B-16133 prokMSA_id:12959 AF114807.1 Saccharothrix espanaensis str. NRRL 15764T prokMSA_id:12963 AF114805.1 Saccharothrix coeruleofusca str. NRRL B-16115T prokMSA_id:12970 AF114815.1 Saccharothrix texasensis str. NRRL B-16107T prokMSA_id:12971 AF114814.1 Saccharothrix texasensis str. NRRL B-16134 prokMSA_id:12973 AF114812.1 Saccharothrix syringae str. NRRL B-16468T prokMSA_id:12974 AF114810.1 Saccharothrix sp. str. NRRL B-16108 prokMSA_id:50409 AF350247.1 Saccharothrix texasensis str. AS4.1186 prokMSA_id:60437 AY135693.2 Saccharothrix xinjiangensis str. AS 4.1731 prokMSA_id:71761 AF328411.1 Saccharothrix sp. str. 98-05-041A 2.3.1.2.3.1.1951 OTU 1 seq prokMSA_id:12975 AF114809.1 Saccharothrix longispora str. NRRL B-116116T 2.3.1.2.3.1.1954 OTU 1 seq prokMSA_id:12978 AF114800.1 Actinosynnema subsp. pretiosum str. NRRL B-16060T subsp. 2.3.1.2.3.1.1975 OTU 1 seq prokMSA_id:12980 AF183956.1 Saccharothrixopsis albidus str. AS4.0423 2.3.1.2.3.1.1984 OTU 1 seq prokMSA_id:12984 AB020031.1 Saccharothrix tangerinus str. MK27-91F2 2.3.1.2.3.1.2010 OTU 2 seqs prokMSA_id:12993 X76953.1 Actinokineospora riparia prokMSA_id:12994 AF114802.1 Actinokineospora riparia str. NRRL B-16432T 2.3.1.2.3.1.2011 OTU 1 seq prokMSA_id:12995 AF114799.1 Actinokineospora inagensis str. NRRL B-24050T 2.3.1.2.30 Pseudonocardiaceae 165 seqs 2.3.1.2.30.1 sf_1 164 seqs 2.3.1.2.30.1.1104 OTU 10 seqs prokMSA_id:55702 AY129756.1 Amycolatopsis sp. str. GY053 prokMSA_id:59956 AY129777.1 Amycolatopsis sp. str. GY311 prokMSA_id:59968 AY129762.1 Amycolatopsis sp. str. GY116 prokMSA_id:63752 AY125600.1 Amycolatopsis mediterranei str. KCTC 1739T prokMSA_id:63968 AF466098.1 Amycolatopsis sp. str. GY144 prokMSA_id:63971 AF466096.1 Amycolatopsis sp. str. GY124 prokMSA_id:63976 AF453718.1 Amycolatopsis sp. str. GY051 prokMSA_id:67634 AY083604.1 Amycolatopsis mediterranei str. F1/24 prokMSA_id:79363 AY184424.1 Amycolatopsis mediterranei str. NRRL B-3240 prokMSA_id:85299 AY222827.1 Amycolatopsis sp. str. GY125 2.3.1.2.30.1.1119 OTU 10 seqs prokMSA_id:59481 AJ508241.1 Amycolatopsis tolypomycina str. DSM 44544 prokMSA_id:59958 AY129773.2 Amycolatopsis sp. str. GY207 prokMSA_id:59959 AY129772.1 Amycolatopsis sp. str. GY286 prokMSA_id:59960 AY129770.1 Amycolatopsis sp. str. GY269 prokMSA_id:59964 AY129764.2 Amycolatopsis sp. str. GY211 prokMSA_id:59967 AY129765.2 Amycolatopsis sp. str. GY212 prokMSA_id:59971 AY129759.1 Amycolatopsis sp. str. GY064 prokMSA_id:59976 AY129757.1 Amycolatopsis sp. str. GY056 prokMSA_id:59977 AY129754.1 Amycolatopsis sp. str. GY049 prokMSA_id:59978 AY129753.2 Amycolatopsis sp. str. GY048 2.3.1.2.30.1.1202 OTU 1 seq prokMSA_id:33771 AF131481.1 Pseudonocardia sp. IM-6071 str. IM 6071 2.3.1.2.30.1.1236 OTU 4 seqs prokMSA_id:11985 U83910.1 Thermobispora bispora str. ATCC19993 prokMSA_id:11986 U83912.1 Thermobispora bispora str. ATCC19993 prokMSA_id:11987 U58524.1 Thermobispora bispora str. JCM3082 prokMSA_id:11988 U58523.1 Thermobispora bispora str. ATCC19993 2.3.1.2.30.1.1250 OTU 1 seq prokMSA_id:50663 AF131491.1 Saccharopolyspora sp. IM-8155 str. IM 8155 2.3.1.2.30.1.1271 OTU 1 seq prokMSA_id:12701 X79184.1 Thermocrispum municipale 2.3.1.2.30.1.1326 OTU 8 seqs prokMSA_id:12920 X76959.1 Pseudonocardia compacta prokMSA_id:12922 Y08535.1 Pseudonocardia alni str. DSM 44104 prokMSA_id:17516 AJ252823.1 Pseudonocardia alni prokMSA_id:43762 AJ252824.1 Pseudonocardia autotrophica str. IMSNU 20050T prokMSA_id:51374 AJ252825.1 Pseudonocardia compacta str. IMSNU 20111T prokMSA_id:74545 AJ252831.1 Pseudonocardia sp. str. IMSNU 22071 prokMSA_id:82726 AY177725.1 Pseudonocardiaceae T4 prokMSA_id:88738 AJ576010.1 Pseudonocardia antarctica 2.3.1.2.30.1.1343 OTU 14 seqs prokMSA_id:13010 Z38020.1 Saccharomonospora sp. prokMSA_id:13011 Z38022.1 "Saccharomonospora caesia" prokMSA_id:13014 Z38023.1 "Saccharomonospora caesia" prokMSA_id:13015 Z38006.1 Saccharomonospora glauca prokMSA_id:13022 Z38003.1 Saccharomonospora glauca prokMSA_id:13023 Z38024.1 "Saccharomonospora caesia" prokMSA_id:13024 Z38018.1 Saccharomonospora cyanea prokMSA_id:13026 Z38004.1 Saccharomonospora glauca prokMSA_id:13029 Z38019.1 "Saccharomonospora caesia" prokMSA_id:13030 Z38017.1 Saccharomonospora azurea prokMSA_id:28485 AJ306300.1 Saccharomonospora xinjiangensis str. DSM 44391T prokMSA_id:43601 AF139879.1 Saccharomonospora glauca str. KCTC 9645 prokMSA_id:74805 AF139880.1 Saccharomonospora glauca str. KCTC 3673 prokMSA_id:81456 AY224197.1 Saccharomonospora sp. str. PAN A5 2.3.1.2.30.1.1346 OTU 1 seq prokMSA_id:12923 X87314.1 Pseudonocardiaceae SR 244a 2.3.1.2.30.1.1355 OTU 11 seqs prokMSA_id:13004 X76957.1 Amycolatopsis mediterranei prokMSA_id:55272 AF466100.1 Amycolatopsis sp. str. GY295 prokMSA_id:55691 AY129776.1 Amycolatopsis sp. str. GY131 prokMSA_id:59482 AJ508239.1 Amycolatopsis balhimycina str. DSM 44591 prokMSA_id:63974 AF466092.1 Amycolatopsis sp. str. GY055 prokMSA_id:63975 AF466094.1 Amycolatopsis sp. str. GY109 prokMSA_id:79479 AY183357.1 Amycolatopsis kentuckyensis str. NRRL B-24129 prokMSA_id:82587 AY222829.1 Amycolatopsis sp. str. GY154 prokMSA_id:85001 AY222831.1 Amycolatopsis sp. str. GY179 prokMSA_id:85854 AY222836.1 Amycolatopsis sp. str. GY299 prokMSA_id:91736 AJ293754.1 Amycolatopsis mediterranei str. IMSNU 20056T 2.3.1.2.30.1.1388 OTU 1 seq prokMSA_id:37332 AF223354.1 Amycolatopsis sacchari 2.3.1.2.30.1.1393 OTU 1 seq prokMSA_id:13005 AF051343.1 Amycolatopsis sulphurea str. DSM 46092T 2.3.1.2.30.1.1402 OTU 1 seq prokMSA_id:17003 AF325726.1 Pseudonocardia alaniniphila 2.3.1.2.30.1.1468 OTU 1 seq prokMSA_id:12940 AF002818.1 Saccharopolyspora spinosa str. DSM 44228T 2.3.1.2.30.1.1470 OTU 1 seq prokMSA_id:12941 AF127526.1 Saccharopolyspora thermophilus str216 2.3.1.2.30.1.1472 OTU 1 seq prokMSA_id:12942 AF154128.1 Saccharopolyspora flava str. AS4.1520T 2.3.1.2.30.1.1473 OTU 1 seq prokMSA_id:12943 AF002819.1 Saccharopolyspora taberi str. DSM 43856T 2.3.1.2.30.1.1474 OTU 1 seq prokMSA_id:13016 AF051342.1 Prauserella rugosa str. DSM 43194T 2.3.1.2.30.1.1475 OTU 1 seq prokMSA_id:12944 U93341.1 Saccharopolyspora subsp. hirsuta str. ATCC 27875 2.3.1.2.30.1.1495 OTU 1 seq prokMSA_id:12950 Z22730.1 Actinopolyspora mortivallis 2.3.1.2.30.1.1496 OTU 1 seq prokMSA_id:12952 X54287.1 Actinopolyspora halophila 2.3.1.2.30.1.1528 OTU 1 seq prokMSA_id:35897 AF422576.1 clone t001 2.3.1.2.30.1.1530 OTU 1 seq prokMSA_id:44587 AJ252830.1 Pseudonocardia thermophila str. IMSNU 20112T 2.3.1.2.30.1.1533 OTU 4 seqs prokMSA_id:13013 Z38021.1 Saccharomonospora viridis prokMSA_id:13017 Z38005.1 Saccharomonospora viridis prokMSA_id:13019 Z38007.1 Saccharomonospora viridis prokMSA_id:13020 AF127525.1 Saccharomonospora thermoviridis str22.1 2.3.1.2.30.1.1566 OTU 1 seq prokMSA_id:41449 AY015427.1 Actinopolyspora indiensis str. n1 2.3.1.2.30.1.1594 OTU 1 seq prokMSA_id:63969 AF466101.1 Amycolatopsis sp. str. GY307 2.3.1.2.30.1.1607 OTU 1 seq prokMSA_id:18239 AF325728.1 Pseudonocardia xinjiangensis 2.3.1.2.30.1.1648 OTU 1 seq prokMSA_id:19135 AJ278497.1 Saccharomonospora halophila str. DSM 44411T 2.3.1.2.30.1.1661 OTU 23 seqs prokMSA_id:12997 X76958.1 Amycolatopsis orientalis prokMSA_id:12998 X77959.1 Amycolatopsis species prokMSA_id:13000 D86935.1 Amycolatopsis subsp. orientalis str. IFO12806 prokMSA_id:13002 AF051340.1 Amycolatopsis alba str. DSM 44262 prokMSA_id:13003 AF051341.1 Amycolatopsis coloradensis str. NRRL 3218T prokMSA_id:23414 AJ278496.1 Amycolatopsis keratiniphila str. DSM 44409T prokMSA_id:23759 AJ400711.1 Amycolatopsis subsp. orientalis str. IMSNU 20058T prokMSA_id:25029 AJ400709.1 Amycolatopsis azurea str. IMSNU 20053T prokMSA_id:51483 AJ421142.1 Amycolatopsis coloradensis str. DSM 44225T prokMSA_id:55883 AJ508237.1 Amycolatopsis decaplanina str. DSM 44594 prokMSA_id:59484 AJ508238.1 Amycolatopsis keratiniphila subsp. nogabecina str. DSM 44586 subsp. prokMSA_id:59492 AJ508236.1 Amycolatopsis japonica str. DSM 44213 prokMSA_id:59962 AY129769.1 Amycolatopsis sp. str. GY293 prokMSA_id:59963 AY129768.1 Amycolatopsis sp. str. GY248 prokMSA_id:59965 AY129767.1 Amycolatopsis sp. str. GY249 prokMSA_id:59966 AY129766.1 Amycolatopsis sp. str. GY246 prokMSA_id:59969 AY129761.1 Amycolatopsis sp. str. GY091 prokMSA_id:59970 AY129760.1 Amycolatopsis sp. str. GY080 prokMSA_id:88764 AJ577997.1 Amycolatopsis subsp. lurida str. DSM 43134 prokMSA_id:91198 AJ293755.1 Amycolatopsis orientalis subsp. lurida str. IMSNU 20057T prokMSA_id:91582 AJ293753.1 Amycolatopsis coloradensis str. MSNU 22096T prokMSA_id:97470 AB124414.1 Amycolatopsis sp. str. 340C07 prokMSA_id:104751 AY129763.1 Amycolatopsis sp. str. GY250 2.3.1.2.30.1.1731 OTU 2 seqs prokMSA_id:16982 AF131485.1 Saccharopolyspora sp. IM-6850 str. IM 6850 prokMSA_id:37273 AF131486.1 Saccharopolyspora sp. IM-6889 str. IM 6889 2.3.1.2.30.1.1824 OTU 7 seqs prokMSA_id:59955 AY129774.1 Amycolatopsis sp. str. GY088 prokMSA_id:63970 AF466097.1 Amycolatopsis sp. str. GY142 prokMSA_id:63972 AF466093.1 Amycolatopsis sp. str. GY073 prokMSA_id:63973 AF453717.1 Amycolatopsis sp. str. GY024 prokMSA_id:91887 AJ293756.1 Amycolatopsis sulphurea str. IMSNU 20060T prokMSA_id:104427 AF408986.1 Amycolatopsis sp. str. Ellin144 prokMSA_id:111828 AF466095.1 Amycolatopsis sp. str. GY115 2.3.1.2.30.1.1849 OTU 3 seqs prokMSA_id:17258 AF131490.1 Saccharopolyspora sp. IM-8127 str. IM 8127 prokMSA_id:17604 AF131487.1 Saccharopolyspora sp. IM-6897 str. IM 6897 prokMSA_id:70980 AF131488.1 Saccharopolyspora sp. IM-7019 str. IM 7019 2.3.1.2.30.1.1863 OTU 23 seqs prokMSA_id:12913 Z14111.1 Pseudonocardia halophobica prokMSA_id:12916 D85472.1 Pseudonocardia yunnanensis prokMSA_id:12927 Y08534.1 Pseudonocardia halophobica str. DSM 43089 prokMSA_id:12930 Y08537.1 Pseudonocardia sulfidoxydans prokMSA_id:12931 AJ249200.1 Pseudonocardia sp. K1 prokMSA_id:12934 AF056706.1 Pseudonocardia yunnanensis str. CCTCC M90959; Y-11981 prokMSA_id:18128 AF378364.1 Pseudonocardia sulfidoxydans prokMSA_id:18313 AJ252826.1 Pseudonocardia hydrocarbonoxydans prokMSA_id:20264 AJ252827.1 Pseudonocardia halophobica prokMSA_id:22784 AF234120.1 Sturt arid-zone soil clone #0649-1I18 prokMSA_id:27130 AF325727.1 Pseudonocardia aurantiaca prokMSA_id:30436 AJ252833.1 Pseudonocardia kongjuensis str. LM 157 prokMSA_id:30607 AJ311174.1 Kibdelosporangium subsp. aridum str. DSM 43828T prokMSA_id:31830 AJ252822.1 Pseudonocardia yunnanensis str. IMSNU 22019 prokMSA_id:43413 AJ252828.1 Pseudonocardia petroleophila str. IMSNU 22072T prokMSA_id:50638 AF325725.1 Pseudonocardia zijingensis prokMSA_id:56399 AJ512463.1 Kibdelosporangium aridum subsp. largum prokMSA_id:77990 AB074634.1 actinobacterium clone:APe4_52 clone APe4_52 prokMSA_id:85008 AJ556156.1 Pseudonocardia benzenivorans prokMSA_id:85863 AY247276.1 Pseudonocardia sp. M1 prokMSA_id:91804 AY340622.1 Pseudonocardia dioxanivorans str. CB1190 prokMSA_id:99316 AY426714.2 Actinoalloteichus spitii str. MTCC 6194 prokMSA_id:111157 AJ871311.1 Pseudonocardia zijingensis CP173-1 2.3.1.2.30.1.1867 OTU 7 seqs prokMSA_id:59483 AJ508240.1 Amycolatopsis vancoresmycina str. DSM 44592 prokMSA_id:59974 AY129758.1 Amycolatopsis sp. str. GY062 prokMSA_id:59975 AY129755.1 Amycolatopsis sp. str. GY052 prokMSA_id:67635 AY083603.1 Amycolatopsis rifamycinica str. DSM 46095 prokMSA_id:79251 AY183356.1 Amycolatopsis pretoriensis str. NRRL B-24133 prokMSA_id:79423 AY183358.1 Amycolatopsis lexingtonensis str. NRRL B-24131 prokMSA_id:85437 AY222833.1 Amycolatopsis sp. str. GY203 2.3.1.2.30.1.1904 OTU 1 seq prokMSA_id:45443 AF131489.1 Saccharopolyspora sp. IM-8110 str. IM 8110 2.3.1.2.30.1.1907 OTU 1 seq prokMSA_id:35684 AJ252832.1 Amycolatopsis albidoflavus str. IMSNU 22139T 2.3.1.2.30.1.1928 OTU 2 seqs prokMSA_id:13006 AF052390.1 Amycolatopsis thermoflava str. N1165 prokMSA_id:27705 AJ249135.1 Amycolatopsis methanolica str. IMSNU 20055T 2.3.1.2.30.1.1932 OTU 1 seq prokMSA_id:42025 AJ249206.1 Pseudonocardia spinosispora LM 141T 2.3.1.2.30.1.1953 OTU 1 seq prokMSA_id:13031 AF127524.1 Saccharomonospora guangxiensis str4 2.3.1.2.30.1.1957 OTU 1 seq prokMSA_id:47068 AF131352.1 Amycolatopsis sp. IM-1163 str. IM 1163 2.3.1.2.30.1.1971 OTU 1 seq prokMSA_id:51028 AJ252829.1 Pseudonocardia saturnea str. IMSNU 20052T 2.3.1.2.30.1.1988 OTU 1 seq prokMSA_id:12987 U58530.1 Kutzneria viridogrisea str. JCM3282 2.3.1.2.30.1.2007 OTU 1 seq prokMSA_id:12990 AB006178.1 Actinoalloteichus cyanogriseus str. IFO14455 2.3.1.2.30.1.2009 OTU 1 seq prokMSA_id:12992 X70429.1 Kutznera viridogrisea 2.3.1.2.30.1.2013 OTU 2 seqs prokMSA_id:11989 U83909.1 Thermobispora bispora str. ATCC19993 prokMSA_id:11990 U83911.1 Thermobispora bispora str. ATCC19993 2.3.1.2.30.1.2029 OTU 1 seq prokMSA_id:35860 AF465644.1 Actinobacterium isolate str. YNPRH1P-1 2.3.1.2.30.1.2033 OTU 3 seqs prokMSA_id:49974 AF214482.1 Amycolatopsis lactamdurans str. NRRL 3802 prokMSA_id:54677 AJ243301.1 Amycolatopsis lactamdurans str. LC411 prokMSA_id:70505 AB045862.1 Amycolatopsis lactamdurans str. JCM 4912 2.3.1.2.30.2 sf_3 1 seq 2.3.1.2.30.2.1362 OTU 1 seq prokMSA_id:12926 Y08536.1 Pseudonocardia asaccharolytica 2.3.1.2.31 Rarobacteraceae 1 seq 2.3.1.2.31.1 sf_1 1 seq 2.3.1.2.31.1.1744 OTU 1 seq prokMSA_id:71022 AB056129.1 Rarobacter incanus str. IFO 16558 2.3.1.2.32 Sanguibacteraceae 3 seqs 2.3.1.2.32.1 sf_1 3 seqs 2.3.1.2.32.1.1996 OTU 3 seqs prokMSA_id:12356 X79451.1 Sanguibacter inulinus str. ST50 prokMSA_id:12361 X79450.1 Sanguibacter keddieii str. ST74 prokMSA_id:38749 AF371710.1 phylotype OTU-324 swine intestine clone p-3370-23G2 2.3.1.2.33 Sporichthyaceae 7 seqs 2.3.1.2.33.1 sf_1 7 seqs 2.3.1.2.33.1.1223 OTU 4 seqs prokMSA_id:11449 X72377.1 Sporichthya polymorpha prokMSA_id:11451 AB025317.1 Sporichthya polymorpha prokMSA_id:25897 AB006163.1 actinomycete isolate YU 736-21 clone prokMSA_id:73031 AB006164.1 Sporichthya brevicatena 2.3.1.2.33.1.1695 OTU 1 seq prokMSA_id:83514 AY250883.1 lichen-dominated Antarctic cryptoendolithic community clone FBP417 2.3.1.2.33.1.1701 OTU 2 seqs prokMSA_id:32457 AJ277694.1 prokMSA_id:34574 AJ277695.1 2.3.1.2.34 Streptomycetaceae 365 seqs 2.3.1.2.34.1 sf_1 222 seqs 2.3.1.2.34.1.1111 OTU 7 seqs prokMSA_id:11790 U93314.1 Kitasatospora phosalacinea str. IFO 14627 prokMSA_id:11815 U93332.1 Kitasatospora setae str. JCM 3304 prokMSA_id:20942 AB022868.1 Kitasatospora setae str. KM-6054 prokMSA_id:26737 AB022876.1 Kitasatospora niigatensis str. SK-3406 prokMSA_id:32241 AB022877.1 Kitasatospora niigatensis str. SK-3412 prokMSA_id:40717 AB022878.1 Kitasatospora niigatensis str. SK-3421 prokMSA_id:51815 AB022875.1 Kitasatospora cineracea str. SK-3255 2.3.1.2.34.1.1128 OTU 4 seqs prokMSA_id:26087 AF233375.1 Streptomyces sp. str. 11AG8 prokMSA_id:84823 AY236339.1 Streptomyces sp. str. YIM 80305 prokMSA_id:87210 AY299619.1 Streptomyces sp. YIM 80250 prokMSA_id:87471 AY299620.1 Streptomyces sp. YIM 80244 2.3.1.2.34.1.1195 OTU 1 seq prokMSA_id:11848 X87316.1 Streptomycetaceae SR 257 2.3.1.2.34.1.1229 OTU 5 seqs prokMSA_id:11793 AF074412.1 Streptacidiphilus carbonis str. JL 415; DSM 41754 prokMSA_id:11798 AF074413.1 Soil actinomycete complete isolate str. JL 134 JL prokMSA_id:11827 AF074409.1 Soil actinomycete complete isolate str. J 195 J prokMSA_id:11828 AF074410.1 Streptacidiphilus neutrinimicus str. JL 206; DSM 41755 prokMSA_id:11831 AF074415.1 Streptacidiphilus albus str. JL 83; DSM 41753 2.3.1.2.34.1.1230 OTU 1 seq prokMSA_id:11852 AF101415.1 Streptomyces yeochonensis str. CN 732 2.3.1.2.34.1.1246 OTU 1 seq prokMSA_id:11918 X53161.1 Streptomyces diastaticus str. DSM 40496 (T) ISP 5496 2.3.1.2.34.1.1251 OTU 1 seq prokMSA_id:11859 Z68099.1 Streptomyces macrosporus 2.3.1.2.34.1.1274 OTU 1 seq prokMSA_id:11807 AB006154.1 Trichotomospora caesia str. IFO14562 2.3.1.2.34.1.1284 OTU 1 seq prokMSA_id:11861 Z68100.1 Streptomyces megasporus 2.3.1.2.34.1.1299 OTU 1 seq prokMSA_id:11863 Z68097.1 Streptomyces thermolineatus 2.3.1.2.34.1.1310 OTU 1 seq prokMSA_id:36230 AF385681.1 Streptomyces beijiangensis str. YIM6 2.3.1.2.34.1.1325 OTU 2 seqs prokMSA_id:11829 AF074411.1 Soil actinomycete complete isolate str. CN 671; DSM 41752 DSM prokMSA_id:11830 AF074414.1 Soil actinomycete complete isolate str. CN 668 CN 2.3.1.2.34.1.1339 OTU 1 seq prokMSA_id:19464 AJ229209.1 anoxic bulk soil flooded rice microcosm clone BSV58 clone 2.3.1.2.34.1.1340 OTU 60 seqs prokMSA_id:11849 X99943.1 Streptomyces griseocarneus str. DSM40004 prokMSA_id:11864 X79323.1 Streptomyces mashuensis prokMSA_id:11868 Z68101.1 Streptomyces thermodiastaticus prokMSA_id:11870 Z68096.1 Streptomyces thermoviolaceus prokMSA_id:11872 AB018095.1 Streptomyces thermodiastaticus str. JCM 4840 prokMSA_id:11873 Z68095.1 Streptomyces thermoviolaceus prokMSA_id:11874 AF060793.1 Streptomyces sp. str. X13 prokMSA_id:11876 U94487.1 Streptomyces thermocarboxydovorans str. DSM 44294 prokMSA_id:11877 U94488.1 Streptomyces thermocarboxydovorans str. DSM 44295 prokMSA_id:11878 U94489.1 Streptomyces thermocarboxydovorans str. DSM 44296 prokMSA_id:11879 AJ001434.1 Streptomyces thermodiastaticus str. NAR 85 prokMSA_id:11880 AB018096.1 Streptomyces thermodiastaticus str. JCM 4840 prokMSA_id:11883 Z68094.1 Streptomyces thermovulgaris prokMSA_id:11884 Z68098.1 Streptomyces thermonitrificans prokMSA_id:11889 AJ000284.1 Streptomyces thermoalcalitolerans str. TA56 () prokMSA_id:11925 U94490.1 Streptomyces thermocarboxydus str. DSM 44293 prokMSA_id:11926 AJ249627.1 Streptomyces thermocarboxydus str. NH50 prokMSA_id:11927 AJ001433.1 Streptomyces sp. str. NT 322 () prokMSA_id:11930 AF012737.1 Streptomyces sp. str. ASSF15 prokMSA_id:11931 AF012741.1 Streptomyces sp. str. ASB37 prokMSA_id:11932 X80826.1 "Streptomyces espinosus" prokMSA_id:11934 AF184081.2 Streptomyces scopiformis str. A25 prokMSA_id:11946 Y00411.1 Streptomyces coelicolor prokMSA_id:11948 X79322.1 Streptomyces glaucescens prokMSA_id:11952 AF170913.1 Streptomyces goraiensis str. MTCC 3154 prokMSA_id:11956 X95470.1 Streptomycetaceae SR 179c prokMSA_id:11960 X80824.1 Streptomyces caelestis prokMSA_id:11962 X99942.1 Streptomyces vellosus str. NRRL8037 prokMSA_id:11964 X79324.1 Streptomyces bluensis prokMSA_id:16836 AJ399483.1 Streptomyces afghaniensis str. ISP 5228 prokMSA_id:16961 AY029353.1 Streptomyces thermoviolaceus str. AB106 prokMSA_id:22974 AJ007403.1 Streptomyces somaliensis str. DSM 40738 prokMSA_id:26260 AB045888.1 Streptomyces purpurascens str. JCM 4509 prokMSA_id:26713 AF369704.1 Streptomyces roseoflavus str. JCM 4154; AS4.1636 prokMSA_id:30298 AF306657.2 Streptomyces thermosacchari str. K127 prokMSA_id:30686 AF306659.2 Streptomyces thermosacchari str. K122 prokMSA_id:30734 AF306658.2 Streptomyces thermosacchari str. K126 prokMSA_id:31629 AJ399478.1 Streptomyces janthinus str. ISP 5206 prokMSA_id:35830 AB045865.1 Streptomyces heteromorphus str. JCM 5031 prokMSA_id:35911 AF233338.1 Streptomyces maritimus str. BD26 prokMSA_id:36096 AF333113.1 Streptomyces thermospinosisporus str. AT10 prokMSA_id:38018 AJ007402.1 Streptomyces thermocoprophilus str. B19 prokMSA_id:39423 AJ420320.1 Streptomyces sp. str. UAH44 prokMSA_id:44142 AF441168.1 Streptomyces mexicanus str. CH-M-1035 prokMSA_id:47723 AF112165.2 Streptomyces sp. str. EF-2 prokMSA_id:51020 AB045889.1 Streptomyces steffisburgensis str. JCM 4833 prokMSA_id:52246 AB045884.1 Streptomyces subsp. albus str. JCM 10204 prokMSA_id:59982 AF452714.1 Streptomyces speibonae str. PK-Blue prokMSA_id:63867 AJ494865.1 Streptomyces albogriseolus str. NRRL B-1305 = DSM 40003 prokMSA_id:67229 AF492844.1 Streptomyces sp. str. NK1057 prokMSA_id:69481 AB045870.1 Streptomyces cattleya str. JCM 4925 prokMSA_id:70639 AF290616.1 Streptomyces roseoflavus str. ATCC19920 prokMSA_id:74503 AB045859.1 Streptomyces panayensis str. JCM 5042 prokMSA_id:82694 AY222323.1 Streptomyces plemorphus str. YIM 32065 prokMSA_id:82727 AY222320.1 Streptomyces nanningensis str. YIM 33098 prokMSA_id:83402 AY247716.1 Streptomyces maritimus prokMSA_id:85226 AY247715.1 Streptomyces tendae prokMSA_id:85361 AY277529.1 Streptomyces hebeiensis str. YIM 001 prokMSA_id:102553 AY741285.1 Streptomyces sp. str. M40 prokMSA_id:111957 AY459531.2 Streptomyces sp. str. M7 2.3.1.2.34.1.1342 OTU 1 seq prokMSA_id:27478 AF131518.1 Streptomyces sp. IM-6840 str. IM 6840 2.3.1.2.34.1.1344 OTU 1 seq prokMSA_id:11871 X76705.1 Streptomyces species 2.3.1.2.34.1.1354 OTU 5 seqs prokMSA_id:11806 X80825.1 Streptomyces subrutilus prokMSA_id:11808 X95471.1 Actinomyces sp. SR 25 prokMSA_id:11811 D85112.1 Streptomyces lavendulae prokMSA_id:44555 AJ308576.1 Streptomyces sp. str. So54 prokMSA_id:62750 AF401982.1 Streptomyces sp. str. P5 2.3.1.2.34.1.1363 OTU 1 seq prokMSA_id:11875 X87315.1 Streptomycetaceae SR 247 2.3.1.2.34.1.1375 OTU 1 seq prokMSA_id:72661 AF423240.1 soil clone 228-1 2.3.1.2.34.1.1377 OTU 1 seq prokMSA_id:30701 AB045871.1 Streptomyces cattleya str. JCM 4925 2.3.1.2.34.1.1436 OTU 1 seq prokMSA_id:11847 AF117304.1 Streptomyces malaysiensis str. ATB-11 2.3.1.2.34.1.1544 OTU 34 seqs prokMSA_id:11789 U93330.1 Kitasatospora phosalacinea str. JCM 3340 prokMSA_id:11792 U93334.1 Kitasatospora phosalacinea str. IFO 14362 prokMSA_id:11795 U93328.1 Kitasatospora paracochleata str. 14769 prokMSA_id:11796 U93320.1 Kitasatospora griseola str. JCM 3339 prokMSA_id:11797 U93326.1 Kitasatospora melanogena str. JCM 3337 prokMSA_id:11801 U93312.1 Kitasatospora azatica str. IFO13803 prokMSA_id:11802 U93322.1 Kitasatospora kifunensis str. JCM 9081 prokMSA_id:11816 AF050493.1 Kitasatospora cheerisanensis str. YC75 prokMSA_id:11821 U93318.1 Kitasatospora cystarginea str. JCM 7356 prokMSA_id:11823 U93324.1 Kitasatospora mediocidica str. IFO 14789 prokMSA_id:11824 Y15504.1 Streptomyces aureofaciens str. NRRL 2209 prokMSA_id:11825 AF060792.1 Kitasatospora sp. str. C2 prokMSA_id:11826 Y15505.1 Streptomyces sp. str. 317 prokMSA_id:18850 AB022872.1 Kitasatospora cystarginea str. IFO14836T prokMSA_id:23352 AB022879.1 Kitasatospora griseola str. OM-5023 prokMSA_id:24904 U93316.1 Kitasatospora cochleata str. IFO 14768 prokMSA_id:27121 AB045881.1 Streptomyces aureofaciens str. JCM 4624 prokMSA_id:32322 AB022871.1 Kitasatospora cochleata str. IFO14768T prokMSA_id:36266 AJ427923.1 Kitasatospora sp. str. PU22869 prokMSA_id:42735 AF306638.1 Streptomyces sp. str. PR4.0307 prokMSA_id:45323 AB022870.1 Kitasatospora griseola str. AM-9660T (IFO14371) prokMSA_id:50005 AB022869.1 Kitasatospora phosalacinea str. KA-338T (IFO 14372) prokMSA_id:52818 AB022874.1 Kitasatospora kifunensis str. IFO15206T prokMSA_id:102444 AY442263.1 Kitasatospora nipponensis str. HKI 0315 2148-13 prokMSA_id:102601 AY442264.1 Kitasatospora kifunensis str. HKI 0316 2122-22 prokMSA_id:102762 AY442265.1 Kitasatospora gansuensis str. HKI 0314 2050-15 prokMSA_id:102909 AY442266.1 Kitasatospora terrestris str. HKI 0186 2293-12 prokMSA_id:103198 AY442268.1 Kitasatospora paranensis str. HKI 0190 2292-41 prokMSA_id:103933 AJ616217.1 Kitasatospora recifensis str. Recife prokMSA_id:104074 AF409019.1 Kitasatospora sp. str. Ellin177 prokMSA_id:106229 AY207608.1 Streptomyces aureofaciens str. KACC 20180 prokMSA_id:107576 AF408959.1 Kitasatospora sp. str. Ellin117 prokMSA_id:107779 AY494737.1 Kitasatospora recifensis str. DAUFPE13817 prokMSA_id:111161 AY858889.1 Kitasatospora kepongensis 2.3.1.2.34.1.1569 OTU 11 seqs prokMSA_id:11917 D63871.1 Streptomyces sampsonii prokMSA_id:20295 AF429400.1 Streptomyces sp. str. VTT E-99-1336 (B329) VTT prokMSA_id:24956 AF429394.1 Streptomyces sp. str. VTT E-99-1330 (A83) prokMSA_id:26614 AJ007400.1 Streptomyces somaliensis str. DSM 40267 prokMSA_id:27371 AJ399486.1 Streptomyces sp. str. ISP 5310 prokMSA_id:33034 AY029697.1 Streptomyces sp. KN-0260 prokMSA_id:33840 AB052845.1 Streptomyces sp. AP77 prokMSA_id:44263 AJ399482.1 Streptomyces thermotolerans str. ISP 5227 prokMSA_id:49844 AF429393.1 Streptomyces sp. str. VTT E-99-1329 (A52) prokMSA_id:69484 AB045867.1 Streptomyces subsp. griseus str. IFO 13550 subsp. prokMSA_id:81466 AY079156.1 Streptomyces sp. str. VK-A60 2.3.1.2.34.1.1617 OTU 1 seq prokMSA_id:35160 AF423260.1 soil clone 41-1 2.3.1.2.34.1.1639 OTU 24 seqs prokMSA_id:11919 Z76688.1 Streptomyces rutgersensis str. DSM 40077T prokMSA_id:11921 Z76686.1 Streptomyces intermedius str. DSM 40372T prokMSA_id:11922 AF114034.1 Streptomyces nodosus str. ATCC14899 prokMSA_id:11923 Z76687.1 Streptomyces gougerotii str. DSM 40324T prokMSA_id:11928 Y00484.1 "Streptomyces lividans" prokMSA_id:11933 M27245.1 Streptomyces ambofaciens prokMSA_id:11936 X60514.1 Streptomyces coelicolor prokMSA_id:11940 D63870.1 Streptomyces eurythermus prokMSA_id:11941 AF114033.1 Streptomyces nodosus str. ATCC14899 prokMSA_id:11942 AF114035.1 Streptomyces nodosus str. ATCC14899 prokMSA_id:11943 AF114036.1 Streptomyces nodosus str. ATCC14899 prokMSA_id:11949 X80827.1 Streptomyces pseudogriseolus prokMSA_id:11951 AF026080.1 Streptomyces sp. str. CHR3 prokMSA_id:11954 D63873.1 Streptomyces tendae prokMSA_id:11955 AF026081.1 Streptomyces sp. str. CHR28 prokMSA_id:16535 AF112168.3 Streptomyces sp. str. EF-14 prokMSA_id:24646 AL109848.2 Streptomyces coelicolor str. A3(2) prokMSA_id:25222 AB045866.1 Streptomyces subsp. griseus str. IFO 13550 subsp. prokMSA_id:37883 AF112172.2 Streptomyces sp. str. EF-60 prokMSA_id:48414 AJ391814.1 Streptomyces sp. str. NRRL 5799 prokMSA_id:49899 AF295602.1 Streptomyces sp. str. SNG9 prokMSA_id:54479 AF112171.2 Streptomyces sp. str. EF-51 prokMSA_id:69739 AB045886.1 Streptomyces nogalater str. JCM 4799 prokMSA_id:78531 AY177662.1 Streptomyces sp. str. 40003 2.3.1.2.34.1.1690 OTU 8 seqs prokMSA_id:11733 X79325.1 Streptomyces galbus prokMSA_id:24460 AJ310923.1 Streptomyces griseochromogenes str. DSM 40499 prokMSA_id:27887 AB045858.1 Streptomyces viridochromogenes str. JCM 5013 prokMSA_id:34932 AF112166.2 Streptomyces sp. str. EF-4 prokMSA_id:41535 AB045876.1 Streptomyces bobili str. JCM 4624 prokMSA_id:42621 AJ308571.1 Streptomyces sp. str. Sm22 prokMSA_id:48947 AF112170.2 Streptomyces sp. str. EF-25 prokMSA_id:69713 AB045868.1 Streptomyces fimbriatus str. JCM 4910 2.3.1.2.34.1.1697 OTU 1 seq prokMSA_id:11920 X76702.1 Streptomyces species 2.3.1.2.34.1.1757 OTU 1 seq prokMSA_id:11839 X53169.1 Streptomyces salmonis str. DPDU 0098 (T) 2.3.1.2.34.1.1771 OTU 25 seqs prokMSA_id:11764 D63872.1 Streptomyces setonii prokMSA_id:11766 U93336.1 Streptomyces sp. str. JCM 7249 prokMSA_id:11767 U93338.1 Streptomyces sp. str. JCM 7250 prokMSA_id:11770 X87309.1 Streptomycetaceae SR 119 prokMSA_id:11771 Y15498.1 Streptomyces sp. str. 254 prokMSA_id:11772 AF012738.1 Streptomyces sp. str. ASSF22 prokMSA_id:11780 AF012736.1 Streptomyces sp. str. ASSF13 prokMSA_id:11787 AB030571.1 Streptomyces subsp. griseus str. 2247 prokMSA_id:17449 AJ308575.1 Streptomyces sp. str. So10 prokMSA_id:19804 AF112160.1 Streptomyces caviscabies str. ATCC51928 prokMSA_id:20768 AF112174.2 Streptomyces sp. str. EF-91 prokMSA_id:30880 AY029698.1 Streptomyces sp. KN-0479 prokMSA_id:31028 AF112179.2 Streptomyces sp. str. OB-35 prokMSA_id:35011 AF112175.2 Streptomyces sp. str. EF-93 prokMSA_id:35685 AJ308577.1 Streptomyces sp. str. Nm5 prokMSA_id:38300 AF361784.1 Streptomyces luridiscabiei str. S63 prokMSA_id:43555 AF429390.1 Streptomyces sp. str. VTT E-99-1326 (A4) prokMSA_id:45786 AB045872.1 Streptomyces argenteolus str. JCM 4623 prokMSA_id:50476 AF389344.1 Streptomyces sp. str. YIM8 prokMSA_id:56621 AY114179.1 Streptomyces sp. str. AS 4.1182 prokMSA_id:63868 AJ494864.1 Streptomyces flavogriseus str. CBS 101.34 = DSM 40323 prokMSA_id:66693 AY094371.1 Streptomyces subsp. griseus str. ISP 5236 prokMSA_id:75518 AY148074.1 Streptomyces sp. str. EN23 prokMSA_id:76219 AY154479.1 Streptomyces sp. str. A13 prokMSA_id:77539 AY167847.1 Streptomyces caviscabies str. SAFR-024 2.3.1.2.34.1.1786 OTU 7 seqs prokMSA_id:11832 X79851.1 Streptomyces bikiniensis prokMSA_id:17191 AB045890.1 Streptomyces venezuelae str. JCM 4526 prokMSA_id:22704 AF331829.1 Streptomyces sp. R22 prokMSA_id:27046 AY043395.1 Streptomyces sp. str. KJ-72 prokMSA_id:34014 AB045861.1 Streptomyces lipmanii str. JCM 4711 prokMSA_id:37181 AF454764.1 Streptomyces lateritius str. AS4.1427; JCM4389T prokMSA_id:44772 AB045869.1 Streptomyces clavuligerus str. JCM 4710 2.3.1.2.34.1.1795 OTU 1 seq prokMSA_id:11944 X81574.1 Streptomyces species 2.3.1.2.34.1.1841 OTU 1 seq prokMSA_id:45079 AF318046.1 Streptomyces olivaceus str. ATCC 21379 2.3.1.2.34.1.1846 OTU 1 seq prokMSA_id:11953 X53162.1 Streptomyces brasiliensis 2.3.1.2.34.1.1908 OTU 1 seq prokMSA_id:23521 AY040614.1 Streptomyces sp. str. F50970 2.3.1.2.34.1.1918 OTU 1 seq prokMSA_id:36636 AF131577.1 Streptomyces sp. IM-7248 str. IM 7248 2.3.1.2.34.1.1939 OTU 1 seq prokMSA_id:46451 AF345862.1 Streptomyces sp. str. KACC 20159 2.3.1.2.34.1.1941 OTU 1 seq prokMSA_id:33286 AB030585.1 Streptomyces ushikuensis str. KM-4927 2.3.1.2.34.1.1983 OTU 3 seqs prokMSA_id:11755 X87320.1 Streptomycetaceae SR 70 prokMSA_id:27863 AJ399487.1 Streptomyces cinnabarinus str. ISP 5467 prokMSA_id:75046 AY154478.1 Streptomyces sp. str. A3 2.3.1.2.34.1.2026 OTU 1 seq prokMSA_id:46555 AJ391817.1 Streptomyces sparsogenes str. NRRL 2940T 2.3.1.2.34.1.2057 OTU 1 seq prokMSA_id:11716 X53163.1 Streptomyces albus 2.3.1.2.34.2 sf_3 143 seqs 2.3.1.2.34.2.1743 OTU 143 seqs prokMSA_id:11718 D63867.1 Streptomyces diastatochromogenes prokMSA_id:11721 X87312.1 Streptomycetaceae SR 168 prokMSA_id:11723 D63864.1 Streptomyces scabies prokMSA_id:11725 Z71365.1 Streptomyces sp. str. IMSNU 21266 IMSNU-1 prokMSA_id:11729 AJ007428.1 Streptomyces reticuliscabiei CFBP4531 prokMSA_id:11732 Y15499.1 Streptomyces sp. str. 300 prokMSA_id:11734 AF068055.1 Streptomyces sp. str. Z2 prokMSA_id:11736 D63862.1 Streptomyces scabies prokMSA_id:11737 D63868.1 Streptomyces bottropensis prokMSA_id:11738 AJ007429.1 Streptomyces stelliscabiei CFBP4521 prokMSA_id:11740 X79853.1 Streptomyces hygroscopicus prokMSA_id:11741 D63863.1 Streptomyces scabies prokMSA_id:11742 AJ007423.1 Streptomyces europaeiscabiei CFBP4497 prokMSA_id:11743 AJ007424.1 Streptomyces sp. CFBP4509 prokMSA_id:11744 AJ007425.1 Streptomyces sp. CFBP4508 prokMSA_id:11745 AJ007426.1 Streptomyces sp. CFBP4498 prokMSA_id:11746 Y15493.1 Streptomyces scabiei str. SSC101 prokMSA_id:11747 Y15497.1 Streptomyces scabiei str. 364 prokMSA_id:11748 Y15500.1 Streptomyces scabiei str. 267 prokMSA_id:11749 Y15506.1 Streptomyces scabiei str. 380 prokMSA_id:11750 Y15508.1 Streptomyces scabiei str. 302 prokMSA_id:11751 Y15509.1 Streptomyces scabiei str. 289 prokMSA_id:11752 AF076309.1 Streptomyces sp. EF-73 prokMSA_id:11753 AF101414.1 Streptomyces sp. JL164 str. JL 164 prokMSA_id:11754 X79852.1 Streptomyces galbus prokMSA_id:11757 D85119.1 Streptomyces virginiae prokMSA_id:11758 D85107.1 Streptomyces lavendulae prokMSA_id:11760 D85115.1 Streptomyces lavendulae prokMSA_id:11762 U22972.1 Streptomyces species prokMSA_id:11765 Y10844.1 Streptomyces sp. str. B71277 prokMSA_id:11773 AF012739.1 Streptomyces sp. str. ASB27 prokMSA_id:11777 AB006159.1 Streptomyces microstreptospora str. IFO14669 prokMSA_id:11800 U22974.1 Streptomyces species prokMSA_id:11804 U22973.1 Streptomyces species prokMSA_id:11805 Y10842.1 Streptomyces sp. str. A46R62 prokMSA_id:11817 D85123.1 Streptomyces virginiae prokMSA_id:11858 AB024443.1 Streptomyces albulus str. MF861-C4 prokMSA_id:16585 AJ391830.1 Streptomyces asiaticus str. (S17) A14P1 prokMSA_id:16715 AJ391813.1 Streptomyces sp. str. NRRL 2834 prokMSA_id:19036 AF474177.1 Streptomyces sp. str. LS-A24 prokMSA_id:20194 AJ391836.1 Streptomyces sp. str. (S35) B13P3 prokMSA_id:20285 AF112167.2 Streptomyces sp. str. EF-79 prokMSA_id:21602 AB045885.1 Streptomyces argillaceus str. JCM 4975 prokMSA_id:23098 AJ391815.1 Streptomyces sp. str. NRRL 5182 prokMSA_id:24056 AJ391831.1 Streptomyces cankringensis str. (S23) D13P3 prokMSA_id:26657 AF112159.1 Streptomyces sp. str. EF-52 prokMSA_id:30552 AF397893.1 Streptomyces bottropensis str. LE-3A prokMSA_id:30608 AF385185.1 Streptomyces scabiei str. SBH-3 prokMSA_id:31047 AJ278761.1 Streptomyces sp. str. 346 prokMSA_id:32361 AF361786.1 Streptomyces niveiscabiei str. S78 prokMSA_id:32477 AF385182.1 Streptomyces sp. str. DNK-G02 prokMSA_id:32576 AB045879.1 Streptomyces tauricus str. JCM 4837 prokMSA_id:35613 AF361781.1 Streptomyces scabiei str. S33 prokMSA_id:35664 AY029699.1 Streptomyces sp. KN-1220 prokMSA_id:36466 AJ391828.1 Streptomyces sp. str. (S4) C9P3 prokMSA_id:38469 AY015428.1 Streptomyces kathirae str. s7a prokMSA_id:40593 AF423208.1 soil clone 1056-2 prokMSA_id:42266 AJ391827.1 Streptomyces yogyakartensis str. (S3) C4R3 prokMSA_id:42671 AF385186.1 Streptomyces scabiei str. K(D)75173 prokMSA_id:42859 AJ391833.1 Streptomyces javensis str. (B26) B22P3 prokMSA_id:43763 AJ308574.1 Streptomyces sp. str. Soll53 prokMSA_id:45302 AF332543.1 Streptomyces sp. B7 prokMSA_id:46425 AJ315072.1 Streptomyces sp. LMG 19504 prokMSA_id:47420 AF112154.1 Streptomyces sp. str. EF-35 prokMSA_id:47571 AF275257.1 Streptomyces sp. str. LS-1 prokMSA_id:47677 AJ391819.1 Streptomyces hygroscopicus str. NRRL B-1477 prokMSA_id:47730 AF385183.1 Streptomyces scabiei str. DNK-043 prokMSA_id:49115 AF397892.1 Streptomyces bottropensis str. LE-2 prokMSA_id:49364 AB045887.1 Streptomyces peucetius prokMSA_id:49929 AF385181.1 Streptomyces scabiei str. B-4 prokMSA_id:50088 AF385184.1 Streptomyces sp. str. DNK-G10 prokMSA_id:50437 AJ310927.1 Streptomyces cyaneus str. DSM 40108 prokMSA_id:50889 AJ399475.1 Streptomyces longisporus str. ISP 5166 prokMSA_id:51426 AF112180.1 Streptomyces mirabilis str. ATCC27447 prokMSA_id:51675 AF389343.1 Streptomyces sp. str. YIM26 prokMSA_id:51904 AJ007401.1 Streptomyces somaliensis str. M29 prokMSA_id:51985 AY057090.1 Streptomyces scabiei subsp. chosun str. M0137 subsp. prokMSA_id:52561 AB045863.1 Streptomyces jumonjinensis str. JCM 4947 prokMSA_id:53324 AB026203.1 Streptomyces scabiei str. 84232 prokMSA_id:53328 AB026206.1 Streptomyces scabiei str. CEK-037 prokMSA_id:53367 AB026199.1 Streptomyces scabiei str. ATCC 49173 prokMSA_id:53444 AB026208.1 Streptomyces scabiei str. 84102 prokMSA_id:53580 AB026216.1 Streptomyces scabiei str. E-2 prokMSA_id:53692 AB026209.1 Streptomyces scabiei str. 8779 prokMSA_id:54076 AB026212.1 Streptomyces scabiei str. 8770 prokMSA_id:54131 AB026200.1 Streptomyces scabiei str. SNS-26 prokMSA_id:54153 AB026204.1 Streptomyces scabiei str. RB2 prokMSA_id:54184 AB026217.1 Streptomyces bottropensis str. ATCC 25435 prokMSA_id:54201 AB026207.1 Streptomyces scabiei str. 84174 prokMSA_id:54425 AB026213.1 Streptomyces scabiei str. 8776 prokMSA_id:54520 AB026211.1 Streptomyces scabiei str. LQH-4 prokMSA_id:54645 AB026202.1 Streptomyces scabiei str. 8722 prokMSA_id:54735 AB026201.1 Streptomyces scabiei str. ATCC 33282 prokMSA_id:54757 AB026205.1 Streptomyces scabiei str. R90-3 prokMSA_id:54792 AB026215.1 Streptomyces scabiei str. E-1 prokMSA_id:54803 AB026210.1 Streptomyces scabiei str. LM5MT-2 prokMSA_id:54981 AB026214.1 Streptomyces scabiei str. DNK-G01 prokMSA_id:56543 AF346483.1 Streptomyces tumescens str. Km-2-1 prokMSA_id:58872 AF423076.1 Actinobacterium isolate str. '#59 white' prokMSA_id:62746 AF403713.1 Streptomyces sp. str. C1 prokMSA_id:64271 AF395539.1 Streptomyces sp. str. YU100 prokMSA_id:66692 AY094585.1 Streptomyces griseoruber str. ICSSB 1013 prokMSA_id:66695 AY094368.1 Streptomyces aureus str. B7319 prokMSA_id:67018 AF500071.1 Streptomyces phaeochromogenes str. DSM 40073 prokMSA_id:67675 AF346481.1 Streptomyces tumescens str. Cu-3-1 prokMSA_id:67676 AF346480.1 Streptomyces tumescens str. Cu-2-1 prokMSA_id:67680 AF346476.1 Streptomyces tumescens str. B-7-2 prokMSA_id:69890 AJ310924.1 Streptomyces peruviensis str. DSM 40592 prokMSA_id:71929 AF306639.1 Streptomyces sp. str. 11709 prokMSA_id:77075 AJ519938.1 Streptomyces sp. str. GE 90852 prokMSA_id:77191 AY148083.1 Streptomyces sp. str. EN57 prokMSA_id:77970 AB088069.1 Streptomyces sp. TP-A0274 prokMSA_id:90342 AY314783.1 Streptomyces sp. str. FXJ46 prokMSA_id:90690 AY314784.1 Streptomyces sp. str. FXJ04 prokMSA_id:93822 AF503490.1 Streptomyces cyaneogriseus str. DSM 40534 prokMSA_id:99850 AY508512.1 Streptomyces ciscaucasicus str. DSM 40275 prokMSA_id:99924 AY207578.1 Streptomyces scabiei str. KACC 20193 prokMSA_id:100469 AY566558.1 Streptomyces sp. str. GP2 prokMSA_id:100503 AY207594.1 Streptomyces stelliscabiei prokMSA_id:100655 AY207595.1 Streptomyces europaeiscabiei prokMSA_id:100808 AY207596.1 Streptomyces europaeiscabiei prokMSA_id:100968 AY207597.1 Streptomyces europaeiscabiei prokMSA_id:101131 AY207598.1 Streptomyces europaeiscabiei str. KACC 20186 prokMSA_id:101288 AY207599.1 Streptomyces scabiei str. KACC 20222 prokMSA_id:101504 AY438566.1 Streptomyces scabiei str. PK-A41 prokMSA_id:103783 AY621378.1 Streptomyces sp. str. CPS-2 prokMSA_id:103965 AJ621605.2 Streptomyces violens str. DSM 40597 prokMSA_id:104459 AY745498.1 Streptomyces lavendulae str. CH56-4 prokMSA_id:104473 AY566561.1 Streptomyces sp. str. RJ12 prokMSA_id:104630 AY566562.1 Streptomyces sp. str. BN7 prokMSA_id:104999 AY207600.1 Streptomyces scabiei str. KACC 20135 prokMSA_id:105148 AY207601.1 Streptomyces scabiei str. KACC 20227 prokMSA_id:105311 AY207602.1 Streptomyces scabiei str. KACC 20050 prokMSA_id:105469 AY207603.1 Streptomyces scabiei str. KACC 20192 prokMSA_id:105615 AY207604.1 Streptomyces griseus str. KACC 20084 prokMSA_id:105772 AY533138.1 Streptomyces sp. str. AH030061 prokMSA_id:105924 AY207606.1 Streptomyces scabiei str. KACC 20198 prokMSA_id:106079 AY207607.1 Streptomyces scabiei str. KACC 20200 prokMSA_id:106624 AY645903.1 Streptomyces sp. MS-266 str. S0627A12aH prokMSA_id:106703 AY589505.1 Streptomyces cuspidosporus str. IFO 12378; AS 4.1686 prokMSA_id:107203 AY621064.1 Streptomyces scabiei str. CPS-1 prokMSA_id:110622 AJ870981.1 Streptomyces danangensis str. XKDN19 prokMSA_id:112075 AY094363.1 Streptomyces sanglieri str. A5843 2.3.1.2.35 Streptosporangiaceae 107 seqs 2.3.1.2.35.1 sf_1 107 seqs 2.3.1.2.35.1.1150 OTU 1 seq prokMSA_id:17513 AB062380.1 Clavisporangium rectum str. J11 2.3.1.2.35.1.1158 OTU 28 seqs prokMSA_id:12065 X89945.1 Streptosporangium nondiastaticum prokMSA_id:12067 X89954.1 Streptosporangium viridialbum prokMSA_id:12068 X89946.1 Streptosporangium pseudovulgare prokMSA_id:12069 U48995.1 Streptosporangium pseudovulgare prokMSA_id:12070 U48994.1 Streptosporangium nondiastaticum prokMSA_id:12071 X89942.1 Streptosporangium fragile prokMSA_id:12072 U48992.1 Streptosporangium fragile prokMSA_id:12073 X89958.1 Streptosporangium sp. prokMSA_id:12074 X87319.1 Streptosporangiaceae SR 58 prokMSA_id:12075 U48993.1 Streptosporangium longisporum prokMSA_id:12076 X89934.1 Streptosporangium album prokMSA_id:12078 X89948.1 Streptosporangium roseum prokMSA_id:12079 X89956.1 Streptosporangium vulgare prokMSA_id:12081 X89957.1 Streptosporangium vulgare prokMSA_id:12082 X89949.1 Streptosporangium roseum prokMSA_id:12084 X89950.1 "Streptosporangium rubrum" prokMSA_id:12087 X89937.1 Streptosporangium brasiliense prokMSA_id:12088 X89947.1 Streptosporangium roseum prokMSA_id:12089 X89936.1 Streptosporangium amethystogenes prokMSA_id:12090 X89943.1 "Streptosporangium koreanum" prokMSA_id:12091 X89944.1 Streptosporangium longisporum prokMSA_id:12092 X89955.1 Streptosporangium vulgare prokMSA_id:12093 U48999.1 Streptosporangium vulgare prokMSA_id:12095 AF191733.1 Streptosporangium sp. str. 11007 prokMSA_id:12096 AF191735.1 Streptosporangium sp. str. 15110 prokMSA_id:12102 D85495.1 Planomonospora parontospora str. IFO13880 prokMSA_id:12103 AB028653.1 Planomonospora parontospora subsp. antibiotica str. JCM 3094 subsp. prokMSA_id:46051 AB062382.1 Planomonospora sphaerica str. JCM 9374 2.3.1.2.35.1.1189 OTU 1 seq prokMSA_id:12080 AF191734.1 Streptosporangium subroseum str. 7113 2.3.1.2.35.1.1190 OTU 5 seqs prokMSA_id:12110 U48983.1 Nonomuraea spiralis str. IFO 14097 prokMSA_id:12111 U48975.1 Nonomuraea helvata str. IFO 14681 prokMSA_id:12114 U48843.1 Microtetraspora angiospora prokMSA_id:12118 U48982.1 Nonomuraea salmonea str. IFO 14687 prokMSA_id:12120 U48977.1 Nonomuraea polychroma str. IFO 14345 2.3.1.2.35.1.1224 OTU 40 seqs prokMSA_id:12104 AB028655.1 Planomonospora venezuelensis str. JCM 3167 prokMSA_id:12109 AB028654.1 Planobispora rosea str. JCM 3166 prokMSA_id:12112 U48978.1 Nonomuraea pusilla str. IFO 14684 prokMSA_id:12113 D85491.1 Nonomuraea pusilla str. IFO14684 prokMSA_id:12115 X97892.1 Nonomuraea salmonea str. DSM 43678T prokMSA_id:12116 AB006158.1 Cathayosporangium alboflavum str. IFO16009 prokMSA_id:12121 U48844.1 Microtetraspora fastidiosa prokMSA_id:12122 U48842.1 Nonomuraea africana prokMSA_id:12123 U48980.1 Nonomuraea roseola str. IFO 14685 prokMSA_id:12124 U48979.1 Nonomuraea recticatena str. IFO 14525 prokMSA_id:12125 AB006156.1 Nonomuraea dietziae str. IFO14309 prokMSA_id:12133 X70427.1 Acrocarpospora corrugata prokMSA_id:12134 U48991.1 Streptosporangium corrugatum prokMSA_id:12135 X89941.1 Streptosporangium corrugatum prokMSA_id:12136 X89940.1 Streptosporangium claviforme prokMSA_id:12137 D85485.1 Herbidospora cretacea str. IFO15474 prokMSA_id:12138 U48973.1 Microtetraspora fusca str. IFO 13915 prokMSA_id:12139 U48976.1 Microtetraspora niveoalba str. IFO 15239 prokMSA_id:12140 U48974.1 Microtetraspora glauca str. IFO 14761 prokMSA_id:12141 X97891.1 Microtetraspora glauca str. DSM 43311T prokMSA_id:12142 D85490.1 Microtetraspora glauca str. IFO14761 prokMSA_id:12143 D85496.1 Planotetraspora mira str. IFO15435 prokMSA_id:12144 D86936.1 Microbispora subsp. rosea str. IFO14044 prokMSA_id:12146 AB018046.1 Microbispora corallina str. DF-32 prokMSA_id:12149 U48987.1 Microbispora rosea prokMSA_id:12150 U48988.1 Microbispora rosea prokMSA_id:12151 AF002266.1 Microbispora mesophila str. JCM 3151 prokMSA_id:23223 AB062383.1 Microtetraspora malaysiensis str. H47-7 prokMSA_id:29802 AJ269555.1 Nonomuraea africana str. DSM 43748 prokMSA_id:30729 AB025318.1 Acrocarpospora pleiomorpha str. IFO 16266T prokMSA_id:31910 AB062385.1 Microtetraspora malaysiensis str. Y25-12 prokMSA_id:40820 AJ404230.1 Nonomuraea recticatena str. DSM 43937T prokMSA_id:49520 AB062384.1 Microtetraspora malaysiensis str. Y1-5-3 prokMSA_id:52334 AF277201.1 Nonomuraea turkmeniaca str. DSM43926 prokMSA_id:69415 AB006175.1 actinomycete strain IFO16010 clone IFO16010 prokMSA_id:102741 AY749433.1 Herbidospora sp. str. 0385M-1 prokMSA_id:107811 AB188150.1 Acrocarpospora corrugata str. NBRC 13972T prokMSA_id:108281 AB193572.1 Acrocarpospora sp. str. Shinshu-MS-05 prokMSA_id:111484 AB062381.1 Planomonospora alba str. JCM 9373 prokMSA_id:113016 CS024062.1 Microbispora sp. str. ATCC PTA-5024 2.3.1.2.35.1.1277 OTU 1 seq prokMSA_id:12108 D85494.1 Planobispora longispora str. IFO13918 2.3.1.2.35.1.1373 OTU 1 seq prokMSA_id:12059 U48996.1 Streptosporangium roseum 2.3.1.2.35.1.1380 OTU 1 seq prokMSA_id:16975 AF131638.1 Streptosporangiaceae IM-6876 str. IM 6876 2.3.1.2.35.1.1386 OTU 1 seq prokMSA_id:36455 AB006174.1 actinomycete strain:R-31 clone R-31 2.3.1.2.35.1.1416 OTU 1 seq prokMSA_id:12062 X70425.1 Streptosporangium roseum 2.3.1.2.35.1.1505 OTU 8 seqs prokMSA_id:12145 U48985.1 Microbispora rosea prokMSA_id:12147 U48986.1 Microbispora rosea prokMSA_id:12148 U48984.1 Microbispora rosea prokMSA_id:12152 U48989.1 Microbispora rosea prokMSA_id:12153 U48990.1 Microbispora rosea prokMSA_id:20526 AF223346.1 Streptosporangiaceae str. PA154 prokMSA_id:30485 AF223347.1 Streptosporangiaceae str. PA147 prokMSA_id:67226 AF492842.1 Microbispora sp. str. V2 2.3.1.2.35.1.1534 OTU 1 seq prokMSA_id:12100 X89938.1 Streptosporangium carneum 2.3.1.2.35.1.1535 OTU 1 seq prokMSA_id:12101 AF191736.1 Streptosporangium sp. str. 5866 2.3.1.2.35.1.1555 OTU 6 seqs prokMSA_id:12105 X89953.1 Streptosporangium viridialbum prokMSA_id:12106 U48998.1 Streptosporangium viridialbum prokMSA_id:97252 AB124126.1 Streptosporangium sp. str. 322G04 prokMSA_id:97688 AB124288.1 Streptosporangium sp. str. 334G09 prokMSA_id:98299 AB124252.1 Streptosporangium sp. str. 334D03 prokMSA_id:98400 AB124088.1 Streptosporangium sp. str. 322C09 2.3.1.2.35.1.1587 OTU 2 seqs prokMSA_id:18645 AB039961.1 Nonomuraea roseoviolacea subsp. carminata str. IFO 15903T prokMSA_id:19369 AB039960.1 Nonomuraea subsp. roseoviolacea str. SF 2303 2.3.1.2.35.1.1595 OTU 2 seqs prokMSA_id:46890 AF131640.1 Streptosporangiaceae IM-7193 str. IM 7193 prokMSA_id:50123 AF131639.1 Streptosporangiaceae IM-7097 str. IM 7097 2.3.1.2.35.1.1664 OTU 3 seqs prokMSA_id:12097 U48997.1 Streptosporangium violaceochromogenes prokMSA_id:12098 X89952.1 Streptosporangium violaceochromogenes prokMSA_id:12099 X89951.1 Streptosporangium violaceochromogenes 2.3.1.2.35.1.1735 OTU 1 seq prokMSA_id:45962 AB043101.1 Nonomuraea roseoviolacea str. IFO 14098T 2.3.1.2.35.1.1955 OTU 1 seq prokMSA_id:12119 U48845.1 Microtetraspora ferruginea 2.3.1.2.35.1.2016 OTU 1 seq prokMSA_id:25422 AB039959.1 Nonomuraea subsp. roseoviolacea str. IFO 14098T 2.3.1.2.35.1.2037 OTU 1 seq prokMSA_id:73039 AF302078.1 Nonomuraea terrinata str. DSM 44505 2.3.1.2.36 Thermomonosporaceae 73 seqs 2.3.1.2.36.1 sf_1 72 seqs 2.3.1.2.36.1.1151 OTU 3 seqs prokMSA_id:11996 X97893.1 Thermomonospora curvata str. DSM 43183T prokMSA_id:11998 AF002262.1 Thermomonospora curvata str. JCM 3096 prokMSA_id:11999 D86945.1 Thermomonospora curvata str. IFO15933 2.3.1.2.36.1.1406 OTU 3 seqs prokMSA_id:12046 X97890.1 Actinomadura kijaniata prokMSA_id:12047 U49006.1 Actinomadura kijaniata prokMSA_id:40889 AJ420134.1 Actinomadura namibiensis 2.3.1.2.36.1.1546 OTU 21 seqs prokMSA_id:12014 AF002263.1 Actinomadura formosensis str. JCM 7474 prokMSA_id:12032 U58527.1 Actinomadura madurae str. JCM7436 prokMSA_id:12033 X97889.1 Actinomadura madurae str. DSM 43067T prokMSA_id:12035 U49001.1 Actinomadura citrea prokMSA_id:12036 U49011.1 Actinomadura verrucosospora prokMSA_id:12037 U49008.1 Actinomadura luteofluorescens prokMSA_id:12038 AB006155.1 Streptomycoides glaucoflavus str. IFO14668 prokMSA_id:12040 AF153881.1 Actinomadura glauciflava str. AS 4.1202 prokMSA_id:12043 U49000.1 Actinomadura atramentaria prokMSA_id:12048 D85468.1 Actinomadura madurae str. IFO14623 prokMSA_id:16959 AF134067.1 Actinomadura subsp. cremea str. JCM 3308T prokMSA_id:18352 AJ420137.1 Actinomadura fulvescens str. DSM 43923T prokMSA_id:25601 AB006172.1 Actinomadura formosensis str. IFO 14204 prokMSA_id:29049 AF223350.1 Pseudonocardiaceae str. PA151 prokMSA_id:37666 AF277195.1 Actinomadura mexicana str. A290 prokMSA_id:37892 AF163119.1 Actinomadura pelletieri str. JCM3388T prokMSA_id:39421 AJ420140.1 Actinomadura formosensis str. DSM 43997T prokMSA_id:45056 AJ420139.1 Actinomadura citrea str. DSM 43461T prokMSA_id:51435 AY035999.1 Actinomadura nitritigenes str. DSM 44137 prokMSA_id:104502 AY545545.1 Actinomadura sp. str. 28a-59-3 prokMSA_id:105719 AJ293708.1 Actinomadura nitritigenes str. IMSNU 21254T 2.3.1.2.36.1.1669 OTU 1 seq prokMSA_id:28823 AF223348.1 Pseudonocardiaceae str. PA123 2.3.1.2.36.1.1741 OTU 30 seqs prokMSA_id:11991 U49004.1 Actinomadura echinospora prokMSA_id:12002 U49007.1 Actinocorallia libanotica prokMSA_id:12004 D85473.1 Actinocorallia herbida prokMSA_id:12012 AB006160.1 Sarraceniospora aurea prokMSA_id:12013 AB006177.1 Sarraceniospora aurea prokMSA_id:12029 D85467.1 Actinomadura viridis str. IFO15238 prokMSA_id:12041 U49002.1 Actinomadura coerulea prokMSA_id:12058 U49005.1 Actinomadura fulvescens prokMSA_id:20201 AF134066.1 Actinocorallia aurantiaca prokMSA_id:22030 AF163115.1 Actinomadura hibisca str. JCM9627T prokMSA_id:24572 AJ420136.1 Actinomadura hibisca str. DSM 44148T prokMSA_id:26732 AF134070.1 Actinomadura vinacea str. JCM 3325T prokMSA_id:26839 AF163118.1 Actinomadura oligospora str. ATCC 43269 prokMSA_id:29010 AF163122.1 Actinomadura yumaensis str. JCM3369T prokMSA_id:30118 AF163121.1 Actinomadura umbrina str. JCM6837T prokMSA_id:31446 AF163116.1 Actinomadura livida str. JCM3387T prokMSA_id:38367 AJ420135.1 Actinomadura echinospora str. DSM 43163T prokMSA_id:38388 AJ420141.1 Actinomadura viridis str. DSM 43175T prokMSA_id:46173 AF163124.1 Spirillospora sp. str. JCM3123 prokMSA_id:74068 AF134068.1 Actinocorallia glomerata str. JCM 9376T prokMSA_id:88697 AY295796.1 Actinomadura sp. str. 40007 prokMSA_id:89686 AY295797.1 Actinomadura sp. str. 40008 prokMSA_id:100606 AJ293710.1 Actinomadura pelletieri str. IMSNU 22169T prokMSA_id:101239 AJ293714.1 Actinomadura yumaensis str. IMSNU 22167T prokMSA_id:101573 AJ293716.1 Actinomadura sp. str. H590 prokMSA_id:104810 AJ293702.1 Actinomadura fibrosa str. IMSNU 22177T prokMSA_id:105102 AJ293704.1 Actinocorallia glomerata str. IMSNU 22179T prokMSA_id:105261 AJ293705.1 Actinomadura hibisca str. IMSNU 22185T prokMSA_id:105867 AJ293709.1 Actinomadura oligospora str. IMSNU 22174T prokMSA_id:108280 AB193570.1 Actinomadura sp. str. Shinshu-MS-03 2.3.1.2.36.1.1782 OTU 1 seq prokMSA_id:51620 AF163117.1 Actinocorallia longicatena str. JCM9377T 2.3.1.2.36.1.1874 OTU 7 seqs prokMSA_id:12126 AF002261.1 Thermomonospora chromogena str. JCM 6244 prokMSA_id:12127 AF116558.1 Thermomonospora chromogena str. ATCC43196 prokMSA_id:12129 AF116560.1 Thermomonospora chromogena str. ATCC43196 prokMSA_id:12130 AF116561.1 Thermomonospora chromogena str. ATCC43196 prokMSA_id:12131 AF116562.1 Thermomonospora chromogena str. ATCC43196 prokMSA_id:12132 AF028246.1 Thermomonospora chromogena str. ATCC 43196 prokMSA_id:54694 AF116563.1 Thermomonospora chromogena str. ATCC43196 2.3.1.2.36.1.1916 OTU 1 seq prokMSA_id:12028 U49009.1 Actinomadura macra 2.3.1.2.36.1.1929 OTU 1 seq prokMSA_id:12030 U49003.1 Actinomadura cremea 2.3.1.2.36.1.1943 OTU 1 seq prokMSA_id:12034 Z73393.1 Actinomycete species (clone Ep_T1.145) clone Ep_T1.145 2.3.1.2.36.1.1947 OTU 1 seq prokMSA_id:12039 AF154127.1 Actinomadura catellatispora str. AS 4.1522 2.3.1.2.36.1.1979 OTU 1 seq prokMSA_id:12045 AB006157.1 Parvopolyspora pallida str. IFO14788 2.3.1.2.36.1.2043 OTU 1 seq prokMSA_id:51116 AY035998.1 Actinomadura latina str. DSM 43382 2.3.1.2.36.2 sf_3 1 seq 2.3.1.2.36.2.1989 OTU 1 seq prokMSA_id:12128 AF116559.1 Thermomonospora chromogena str. ATCC43196 2.3.1.2.37 Tsukamurellaceae 29 seqs 2.3.1.2.37.1 sf_1 29 seqs 2.3.1.2.37.1.1347 OTU 29 seqs prokMSA_id:13267 X85955.1 Tsukamurella inchonensis prokMSA_id:13269 Z37151.1 Tsukamurella paurometabola prokMSA_id:13270 X80628.1 Tsukamurella paurometabolum prokMSA_id:13271 X92981.1 Tsukamurella pulmonis prokMSA_id:13272 AF001011.1 Tsukamurella pulmonis str. KUL50 prokMSA_id:13273 Y12247.1 Tsukamurella tyrosinosolvens D-1437 prokMSA_id:13274 Y12246.1 Tsukamurella tyrosinosolvens D-1397 prokMSA_id:13275 Y12248.1 Tsukamurella tyrosinosolvens D-1411 prokMSA_id:13276 Y12245.1 Tsukamurella tyrosinosolvens D-1498 prokMSA_id:13277 AF150494.1 Tsukamurella sunchonensis str. SCNU5 prokMSA_id:13278 Z36933.1 Tsukamurella paurometabolum prokMSA_id:13279 Z37150.1 "Tsukamurella spumae" prokMSA_id:13282 Z46751.1 Tsukamurella paurometabola str. DSM 20162 () prokMSA_id:20974 AF283281.1 Tsukamurella inchonensis str. ATCC700082 prokMSA_id:23307 AF283282.1 Tsukamurella inchonensis str. ATCC25938 prokMSA_id:34660 AF093131.1 Tsukamurella sp. str. AM4.1 prokMSA_id:42701 AF283283.1 Tsukamurella strandjordii str. ATCCBAA-173 prokMSA_id:45072 AF283280.1 Tsukamurella paurometabola str. ATCC8368 prokMSA_id:47206 AF475083.1 Tsukamurella tyrosinosolvens prokMSA_id:69803 AF272835.1 Tsukamurella columbiensis prokMSA_id:83812 AY238514.1 Tsukamurella tyrosinosolvens str. DSM 44234 prokMSA_id:84348 AY238512.1 Tsukamurella spumae str. N1173 prokMSA_id:86078 AY254699.1 Tsukamurella tyrosinosolvens str. M12400 prokMSA_id:86153 AY253916.1 Tsukamurella tyrosinosolvens str. M95570 prokMSA_id:86173 AY238513.1 Tsukamurella spumae str. N1176 prokMSA_id:86184 AY259830.1 Tsukamurella tyrosinosolvens str. NIPHL100602/MK2667 prokMSA_id:86558 AY254698.1 Tsukamurella pulmonis str. M67570 prokMSA_id:91598 AY333425.1 Tsukamurella pseudospumae str. JC85 prokMSA_id:106605 AY741505.1 Tsukamurella pulmonis str. NIPHL170804 2.3.1.2.38 Unclassified 227 seqs 2.3.1.2.38.1 sf_3 226 seqs 2.3.1.2.38.1.1085 OTU 1 seq prokMSA_id:77691 AB089082.1 termite gut homogenate clone Rs-Q71 bacterium 2.3.1.2.38.1.1094 OTU 1 seq prokMSA_id:11618 AF142808.1 clone ACE-33 2.3.1.2.38.1.1103 OTU 1 seq prokMSA_id:45648 AJ277688.1 2.3.1.2.38.1.1114 OTU 1 seq prokMSA_id:13222 AF142949.1 clone PENDANT-38 2.3.1.2.38.1.1188 OTU 1 seq prokMSA_id:11431 AB021325.1 strain isolate str. rJ7 2.3.1.2.38.1.1201 OTU 1 seq prokMSA_id:60177 AJ347031.1 sponge clone TK39 2.3.1.2.38.1.1243 OTU 1 seq prokMSA_id:77790 AB089076.1 termite gut homogenate clone Rs-M95 bacterium 2.3.1.2.38.1.1252 OTU 1 seq prokMSA_id:34539 AY039253.1 Krassilnikovia flexuosa str. DSM 43186 2.3.1.2.38.1.1268 OTU 1 seq prokMSA_id:24961 AF328190.1 clone KS49 2.3.1.2.38.1.1275 OTU 1 seq prokMSA_id:12805 AF142934.1 clone PENDANT-22 2.3.1.2.38.1.1296 OTU 1 seq prokMSA_id:77943 AB089080.1 termite gut homogenate clone Rs-M66 bacterium 2.3.1.2.38.1.1307 OTU 1 seq prokMSA_id:12752 AJ224541.1 trickling filter biofilm clone koll13 2.3.1.2.38.1.1334 OTU 33 seqs prokMSA_id:21976 AF316660.1 Crater Lake clone CL500-17 prokMSA_id:23427 AJ289996.1 Germany: Lake Fuchskuhle north basin clone FukuN30 FukuN30 prokMSA_id:27163 AF316653.1 Crater Lake clone CL0-113 prokMSA_id:30090 AJ290039.1 Austria: Lake Gossenkoellesee clone GKS2-38 prokMSA_id:30520 AJ290029.1 Austria: Lake Gossenkoellesee clone GKS2-176 prokMSA_id:31769 AJ290004.1 Germany: Lake Fuchskuhle clone FukuN44 prokMSA_id:32861 AJ290008.1 Germany: Lake Fuchskuhle clone FukuN8 prokMSA_id:35026 AF316662.1 Crater Lake clone CL500-41 prokMSA_id:35381 AF316648.1 Crater Lake clone CL0-47 prokMSA_id:35564 AF316649.1 Crater Lake clone CL0-48 prokMSA_id:40740 AF316651.1 Crater Lake clone CL0-96 prokMSA_id:40821 AF141426.1 particle-attached clone CR-PA36 prokMSA_id:45942 AJ290024.1 Austria: Lake Gossenkoellesee clone GKS2-103 GKS2-103 prokMSA_id:50803 AJ290031.1 Austria: Lake Gossenkoellesee clone GKS2-189 prokMSA_id:54833 AJ290041.1 Austria: Lake Gossenkoellesee clone GKS2-79 prokMSA_id:60850 AY135928.1 clone SG2-138 prokMSA_id:72953 AF107509.1 South Korea: 10M depth Lake Soyang clone SY2-33 prokMSA_id:84180 AF534430.1 Toolik Lake main station at 3 m depth clone TLM06/TLMdgge30 prokMSA_id:95275 AJ575550.1 freshwater clone SW6 prokMSA_id:95369 AJ575547.1 freshwater clone SW2 prokMSA_id:95931 AJ575545.1 freshwater clone NZ2 prokMSA_id:96076 AJ575499.1 freshwater clone R3 prokMSA_id:96171 AJ575556.1 freshwater clone NO3 prokMSA_id:96268 AJ575501.1 freshwater clone R5 prokMSA_id:96722 AJ575513.1 freshwater clone S12 prokMSA_id:96951 AJ575530.1 freshwater clone N3 prokMSA_id:97083 AJ575546.1 freshwater clone SW1 prokMSA_id:97119 AJ575508.1 freshwater clone S7 prokMSA_id:97386 AJ575555.1 freshwater clone NO1 prokMSA_id:97567 AJ575532.1 freshwater clone N5 prokMSA_id:98434 AJ575551.1 freshwater clone SW7 prokMSA_id:100595 AY752123.1 lake water clone S10.6 prokMSA_id:101342 AY466485.1 actinobacterium clone SL17 2.3.1.2.38.1.1348 OTU 1 seq prokMSA_id:86523 AY250882.1 lichen-dominated Antarctic cryptoendolithic community clone FBP406 2.3.1.2.38.1.1366 OTU 1 seq prokMSA_id:44460 AF419679.1 hydrothermal vent sediment clone a2b044 2.3.1.2.38.1.1369 OTU 1 seq prokMSA_id:12051 Z73385.1 Actinomycete species (clone Ep_T1.12) clone Ep_T1.12 2.3.1.2.38.1.1378 OTU 1 seq prokMSA_id:39129 AF419678.1 hydrothermal vent sediment clone a2b024 2.3.1.2.38.1.1379 OTU 1 seq prokMSA_id:26582 AF234143.1 Sturt arid-zone soil clone #0319-7F3 2.3.1.2.38.1.1396 OTU 1 seq prokMSA_id:12690 X92365.1 Frankiaceae gen. sp. G10 G10 dolomite marbel Namibia sp. 2.3.1.2.38.1.1405 OTU 38 seqs prokMSA_id:12391 U12224.1 actinomycete B0672 prokMSA_id:12404 U31487.1 actinomycete (rrs) isolate str. RS4 prokMSA_id:12414 X86594.1 Arthrobacter sp. str. AC-48 prokMSA_id:12426 U31484.1 actinomycete (rrs) isolate str. S7 prokMSA_id:12431 U12225.1 actinomycete B0686 prokMSA_id:12443 X80744.1 Arthrobacter ureafaciens prokMSA_id:12464 AF105024.1 Micrococcus sp. str. DD75 prokMSA_id:12480 X80750.1 Micrococcus lylae prokMSA_id:12483 AF057290.1 Micrococcus lylae W1(IMSNU 50712) prokMSA_id:12489 U12223.1 actinomycete B0629 prokMSA_id:13406 AB012207.1 Corynebacterium sp. str. kpu 002 prokMSA_id:13408 X82065.1 Corynebacterium matruchotii prokMSA_id:17392 AJ400555.1 clone Hb6-K17 prokMSA_id:18913 AF234083.1 Sturt arid-zone soil clone #0319-6N24 prokMSA_id:28179 AF234095.1 Sturt arid-zone soil clone #0319-7G2 prokMSA_id:28787 AF201992.1 direct prokMSA_id:33476 AF197050.1 Arthrobacter sp. 'SMCC ZAT054' str. SMCC ZAT054 prokMSA_id:33821 AF197035.1 Arthrobacter sp. 'SMCC G979' str. SMCC G979 'SMCC prokMSA_id:42163 AJ296288.1 Micrococcus sp. 667-16 prokMSA_id:45425 U87110.1 Arthrobacter sp. 'SMCC B0518' str. SMCC B0518 prokMSA_id:47592 AF234055.1 Sturt arid-zone soil clone #0319-2C8 prokMSA_id:49962 AJ005932.1 Micrococcus antarcticus str. T2 prokMSA_id:51367 AF197028.1 Arthrobacter sp. 'SMCC G963' str. SMCC G963 prokMSA_id:52598 AF197024.1 Arthrobacter sp. 'SMCC G959' str. SMCC G959 prokMSA_id:66789 AF500313.1 Arthrobacter sp. str. PB8 prokMSA_id:72427 AF197030.1 Arthrobacter sp. 'SMCC G965' str. SMCC G965 'SMCC prokMSA_id:78363 AJ271410.1 Arthrobacter sp. Py22 prokMSA_id:80189 AF468444.1 Arctic sea ice ARK9983 prokMSA_id:81633 AY080984.1 Arthrobacter sp. clone ckl22 prokMSA_id:84837 AJ557832.1 soil clone B3 prokMSA_id:90394 AJ577111.1 soil clone 80 prokMSA_id:91129 AY336539.1 Arthrobacter sp. str. pfB10 prokMSA_id:91914 AY345444.1 Lake Kauhako water isolate str. KA72 prokMSA_id:101688 AY577525.1 Arthrobacter protophormiae str. RKJ100 prokMSA_id:104550 AB118224.1 Arthrobacter sp. PAMU-1.14 prokMSA_id:111915 AY592764.1 deep-sea mud volcano clone BC07-4B-28 prokMSA_id:112376 AY880057.1 Corynebacterium sp. S18-03 prokMSA_id:113322 AY739695.1 lubricant-contaminated soil clone KU9 2.3.1.2.38.1.1410 OTU 1 seq prokMSA_id:12060 Z73390.1 Actinomycete species (clone Ep_T1.217) clone Ep_T1.217 2.3.1.2.38.1.1413 OTU 1 seq prokMSA_id:12061 Y07606.2 Drentse grassland soil clone DA016 2.3.1.2.38.1.1438 OTU 1 seq prokMSA_id:20152 AF142912.1 clone ORGANIC-10 2.3.1.2.38.1.1448 OTU 1 seq prokMSA_id:11997 Z73383.1 Actinomycete species (clone Ep_T1.21) clone Ep_T1.21 2.3.1.2.38.1.1486 OTU 1 seq prokMSA_id:55589 AY093463.1 deep marine sediment clone MB-A2-108 2.3.1.2.38.1.1503 OTU 1 seq prokMSA_id:46523 AF424419.1 actinobacterium clone MERTZ_2CM_158 2.3.1.2.38.1.1506 OTU 1 seq prokMSA_id:70691 AJ007646.1 404-57 clone 404-57 2.3.1.2.38.1.1514 OTU 1 seq prokMSA_id:27867 AF202002.1 direct 2.3.1.2.38.1.1527 OTU 2 seqs prokMSA_id:35764 AJ290023.1 Germany: Lake Fuchskuhle clone FukuN15 prokMSA_id:107738 AY752087.1 lake water clone P38.5 2.3.1.2.38.1.1540 OTU 1 seq prokMSA_id:13027 AF142968.1 clone TAYNAYA-20 2.3.1.2.38.1.1553 OTU 1 seq prokMSA_id:27048 AF234072.1 Sturt arid-zone soil clone #0319-6E4 2.3.1.2.38.1.1559 OTU 1 seq prokMSA_id:12341 AF142834.1 clone BURTON-14 2.3.1.2.38.1.1564 OTU 1 seq prokMSA_id:12085 Z73386.1 Actinomycete species (clone Ep_T1.10) clone Ep_T1.10 2.3.1.2.38.1.1571 OTU 1 seq prokMSA_id:45664 AJ290054.1 Germany: Lake Fuchskuhle clone FukuS81 2.3.1.2.38.1.1577 OTU 1 seq prokMSA_id:77874 AB089072.1 termite gut homogenate clone Rs-N91 bacterium 2.3.1.2.38.1.1583 OTU 1 seq prokMSA_id:77657 AB089079.1 termite gut homogenate clone Rs-F20 bacterium 2.3.1.2.38.1.1601 OTU 1 seq prokMSA_id:11638 Z73370.1 Actinomycete species (clone Ep_T1.148) clone Ep_T1.148 2.3.1.2.38.1.1605 OTU 1 seq prokMSA_id:11639 Z73372.1 Actinomycete species (clone Ep_T1.235) clone Ep_T1.235 2.3.1.2.38.1.1609 OTU 1 seq prokMSA_id:12354 U85190.1 Uncultivated organism integrated epilimnetic Moss Lake NY USA clone ACK-M1 2.3.1.2.38.1.1630 OTU 1 seq prokMSA_id:12359 AJ240976.1 Norway:(Svalbard)Hornsund clone Sva0389 2.3.1.2.38.1.1687 OTU 84 seqs prokMSA_id:11984 X86601.1 Acinetobacter sp. prokMSA_id:12291 AB012589.1 Zimmermannella bifida str. IFO 15614 prokMSA_id:12294 AB012592.1 Zimmermannella bifida str. IFO 15777 prokMSA_id:12296 AB012595.1 Zimmermannella bifida str. IAM 14848 prokMSA_id:12304 AB023363.1 Cellulomonas sp. IFO16242 str. IFO 16242 prokMSA_id:12305 AB023364.1 Cellulomonas sp. IFO16243 str. IFO 16243 prokMSA_id:12312 AF105422.1 Xylanimicrobium pachnodae str. VPCX2 prokMSA_id:12322 X83805.1 Cellulomonas fermentans prokMSA_id:12324 X82598.1 Cellulomonas species prokMSA_id:12326 Y09658.1 Cellulomonas sp. str. 1533 prokMSA_id:12327 Y09659.1 Cellulomonas sp. str. 1781 prokMSA_id:12333 X82449.1 Cellulomonas humilata str. NCTC 25174 prokMSA_id:12336 X87310.1 Actinomycetaceae SR 272 prokMSA_id:12337 AB023360.1 Cellulomonas sp. IFO16239 str. IFO 16239 prokMSA_id:12339 X83807.1 Promicromonospora enterophila prokMSA_id:12343 X79458.1 Cellulomonas fermentans str. DSM 3133 prokMSA_id:12345 AJ229241.1 Actinobacteria str. PB90-5 prokMSA_id:12353 X79452.1 Sanguibacter suarezii str. ST26 prokMSA_id:12425 X76977.1 Renibacterium salmoninarum str. K27288 (Icelandic isolate) prokMSA_id:12511 X93594.1 Brevibacterium mcbrellneri str. ATCC 49030 prokMSA_id:12698 AB003932.1 JCM9957) prokMSA_id:12759 M37200.1 Aeromicrobium erythreum prokMSA_id:12945 X76967.1 Saccharopolyspora species prokMSA_id:17773 AF190221.1 Curtobacterium sp. str. RSppiD3 prokMSA_id:18301 Y13325.1 Arthrobacter ilicis prokMSA_id:22581 Y17962.1 Brevibacterium avium str. NCFB 3055 prokMSA_id:23409 AF300651.1 Corynebacterium bovis str. ATCC13722 prokMSA_id:24741 AJ314848.1 Oerskovia jenensis str. DSM 46000 prokMSA_id:25480 AF131450.1 Nocardiopsis sp. IM-3701 str. IM3701 prokMSA_id:29639 AB004733.1 Cellulomonas sp. str. IFO16066 prokMSA_id:32067 AF229116.1 Brevibacterium sp. str. HZM-1 prokMSA_id:32395 AF234093.1 Sturt arid-zone soil clone #0319-7F7 prokMSA_id:33100 Y13326.1 Arthrobacter sp prokMSA_id:33624 AJ251956.1 clone Hb5K56 prokMSA_id:37863 AF131451.1 Nocardiopsis sp. IM-3791 str. IM3791 prokMSA_id:38546 AJ252580.1 agricultural soil SI-13 prokMSA_id:39735 AJ298927.1 Cellulomonas sp. str. d20 prokMSA_id:46028 Y07679.1 Prauseria hordei SH36 prokMSA_id:46093 AF300983.1 South Atlantic Bight; Skidaway Institute Oceanography dock Savannah GA on NO3 as sole N source isolate str. Skdkislt3 prokMSA_id:52650 AF131449.1 Nocardiopsis sp. IM-1287 str. IM1287 prokMSA_id:52667 AJ298873.1 Isoptericola variabile str. MX5 prokMSA_id:62293 AY124424.1 actinobacterium clone SAb12 prokMSA_id:62747 AF403541.1 Xylanimonas cellulosilytica str. XIL07 prokMSA_id:62962 AF527588.1 EBPR sludge lab scale clone LPB61 prokMSA_id:65386 AF511520.1 Brevibacterium helvolum LigUS prokMSA_id:67658 AJ300767.1 Arcanobacterium hippocoleae str. CCUG 44697 equine vaginal secretion prokMSA_id:68735 AF479365.1 glacial ice isolate str. SB12K-6-2 prokMSA_id:70481 AJ308598.1 Georgenia muralis str. 3A-1 prokMSA_id:72333 AB004732.1 Cellulomonas sp. str. IFO16064T prokMSA_id:78162 AB098588.1 Ornithinicoccus sp. str. TUT1020 prokMSA_id:78516 AY189633.1 Homo sapiens outer ear canal clone EarCan106 prokMSA_id:78601 AY189617.1 Homo sapiens outer ear canal clone EarCan090 prokMSA_id:79056 AB094466.1 Georgenia sp. str. 2216.35.28 prokMSA_id:81250 AY211385.1 Kocuria marina str. KMM 3905 prokMSA_id:81576 AY205295.1 Cellulomonas sp. str. CR1-1 prokMSA_id:81680 AY218565.1 penguin droppings sediments clone KD1-70 prokMSA_id:86708 AY299634.1 Nocardiopsis sp. YIM 80191 prokMSA_id:86772 AY282467.1 India isolate str. pd-17 prokMSA_id:87030 AY299631.1 Nocardiopsis sp. YIM 80181 prokMSA_id:87267 AY299632.1 Nocardiopsis sp. YIM 80182 prokMSA_id:87611 AY299630.1 Nocardiopsis sp. YIM 80174 prokMSA_id:87973 AY299633.1 Nocardiopsis sp. YIM 80251 prokMSA_id:90151 AY297780.1 Nocardiopsis sp. str. 60006 prokMSA_id:90605 AF491901.1 Acromyrmex otcospinosus symbiont prokMSA_id:91188 AY336505.1 Nocardiopsis sp. str. 20030 prokMSA_id:91470 AY336503.1 Nocardiopsis sp. str. 20028 prokMSA_id:95548 AY395282.1 -F-12 prokMSA_id:96597 AY395277.1 -S-20 prokMSA_id:97040 AY378244.1 glacial ice MS-T10-08 prokMSA_id:99117 AB174798.1 roots rice plants cultivated on paddy field isolate str. RR9 prokMSA_id:99431 AB159211.1 Thailand isolate str. TT2-3 prokMSA_id:99702 AF409026.1 Micrococcineae str. Ellin184 prokMSA_id:99714 AJ626896.1 Jonesia quinghaiensis str. DSM 15701 prokMSA_id:100122 AJ620364.1 Brevibacterium picturae str. LMG 22061 prokMSA_id:101655 AB107233.2 Actinobacterium isolate str. TT2-10 prokMSA_id:101866 AF128869.1 Curtobacterium sp. str. B20 prokMSA_id:103530 AB174803.1 roots rice plants cultivated on paddy field isolate str. RR16 prokMSA_id:105801 AY374110.1 rainbow trout intestinal B85 prokMSA_id:107046 AY600962.1 Arthrobacter sp. str. MCMB-435 prokMSA_id:107778 AB174796.1 roots rice plants cultivated on paddy field isolate str. RR7 prokMSA_id:109040 AY822044.1 Aeromicrobium alkaliterrae str. KSL-107 prokMSA_id:111466 AY234530.1 soil isolate Ellin5113 prokMSA_id:113780 AB188645.1 termite gut homogenate clone Pl-P1-35 prokMSA_id:114038 AB188662.1 termite gut homogenate clone Pl-P1-63 2.3.1.2.38.1.1747 OTU 3 seqs prokMSA_id:19760 AF387309.1 EBPR sludge clone SBRA375 prokMSA_id:20014 AF387306.1 EBPR sludge clone SBRA213 prokMSA_id:25122 AF387305.1 EBPR sludge clone SBRA20 2.3.1.2.38.1.1756 OTU 1 seq prokMSA_id:12492 AF013544.2 volcanic cinder field Sunset Crater Arizona clone 2.3.1.2.38.1.1765 OTU 1 seq prokMSA_id:85916 AY226312.1 brine water Discovery Mediterranean Sea clone DBBB-76 2.3.1.2.38.1.1789 OTU 3 seqs prokMSA_id:26772 AF424427.1 actinobacterium clone MERTZ_21CM_154 prokMSA_id:48844 AF424424.1 actinobacterium clone MERTZ_0CM_320 prokMSA_id:50134 AF424422.1 actinobacterium clone MERTZ_2CM_348 2.3.1.2.38.1.1806 OTU 1 seq prokMSA_id:21549 AF259644.1 French Polynesia: Tahiti clone 23 2.3.1.2.38.1.1822 OTU 2 seqs prokMSA_id:69307 AY145533.1 dilution (10e-7) brackish section Weser estuary isolate str. GP-5 GP-5 prokMSA_id:71987 AY145534.1 dilution (10e-6) brackish section Weser estuary isolate str. GP-6 2.3.1.2.38.1.1859 OTU 1 seq prokMSA_id:12003 AB015267.1 deepest cold-seep area Japan Trench clone JTB31 2.3.1.2.38.1.1864 OTU 1 seq prokMSA_id:12007 Z73384.1 Actinomycete species (clone Ep_T1.46) clone Ep_T1.46 2.3.1.2.38.1.1866 OTU 1 seq prokMSA_id:12008 Z73381.1 Actinomycete species (clone Ep_T1.5) clone Ep_T1.5 2.3.1.2.38.1.1879 OTU 1 seq prokMSA_id:24170 AF424423.1 actinobacterium clone MERTZ_0CM_206 2.3.1.2.38.1.1886 OTU 1 seq prokMSA_id:38121 AJ007644.1 25/5-66 clone 25/5-66 2.3.1.2.38.1.1887 OTU 1 seq prokMSA_id:12010 Z73382.1 Actinomycete species (clone Ep_T1.9) clone Ep_T1.9 2.3.1.2.38.1.1900 OTU 1 seq prokMSA_id:83955 AJ555199.1 soil clone ACF6 2.3.1.2.38.1.1933 OTU 1 seq prokMSA_id:48003 AF281118.1 sp. sbr-gs28 2.3.1.2.38.1.1945 OTU 1 seq prokMSA_id:44712 AF316644.1 Crater Lake clone CL0-27 2.3.1.2.38.1.1978 OTU 1 seq prokMSA_id:12044 Z73391.1 Actinomycete species (clone Ep_T1.240) clone Ep_T1.240 2.3.1.2.38.1.2008 OTU 4 seqs prokMSA_id:59845 AJ507790.1 winter Bugach pond clone BUG-57 prokMSA_id:97258 AJ575531.1 freshwater clone N4 prokMSA_id:97841 AJ575502.1 freshwater clone R6 prokMSA_id:100025 AB154305.1 freshwater clone S9F-07 2.3.1.2.38.1.2045 OTU 4 seqs prokMSA_id:62707 AF507852.1 hypersaline lake clone ML602J-44 prokMSA_id:80446 AF448193.1 actinobacterium clone ML615J-23 prokMSA_id:80623 AF448198.1 actinobacterium clone ML817J-9 prokMSA_id:80775 AF448192.1 actinobacterium clone ML615J-2 2.3.1.2.38.1.2054 OTU 1 seq prokMSA_id:37747 AJ244799.1 Sepia officinalis symbiont 2.3.1.2.38.1.2058 OTU 1 seq prokMSA_id:30865 AJ007655.1 1405-72 clone 1405-72 2.3.1.2.38.1.2062 OTU 1 seq prokMSA_id:34253 AJ222835.1 sp. clone 1404-31 2.3.1.2.38.2 sf_4 1 seq 2.3.1.2.38.2.1337 OTU 1 seq prokMSA_id:48548 AF234118.1 Sturt arid-zone soil clone #0425-2M17 2.3.1.2.39 Williamsiaceae 2 seqs 2.3.1.2.39.1 sf_1 2 seqs 2.3.1.2.39.1.1136 OTU 1 seq prokMSA_id:13332 Y17384.1 Williamsia murale str. MA140-96T 2.3.1.2.39.1.1137 OTU 1 seq prokMSA_id:13333 AB010909.2 Williamsia maris str. SJS0289-JS1 JoyO 2.3.1.2.4 Bogoriellaceae 1 seq 2.3.1.2.4.1 sf_1 1 seq 2.3.1.2.4.1.1754 OTU 1 seq prokMSA_id:12542 Y09911.1 Bogoriella caseolytica str. HKI0088T 2.3.1.2.5 Brevibacteriaceae 13 seqs 2.3.1.2.5.1 sf_1 13 seqs 2.3.1.2.5.1.1140 OTU 1 seq prokMSA_id:36025 AJ251463.1 Brevibacterium paucivorans str. CF 62 2.3.1.2.5.1.1341 OTU 4 seqs prokMSA_id:12512 AF133534.1 Brevibacterium otitidis str. CIP105044-UR Marseille 1998-67770 prokMSA_id:12513 AF133537.1 Oerskovia sp. CIP101491 str. CIP 101 491 prokMSA_id:12514 X93593.1 Brevibacterium otitidis str. A37/73 (NCFB3053) prokMSA_id:12518 D88212.1 Brevibacterium sp 2.3.1.2.5.1.1618 OTU 1 seq prokMSA_id:12515 X76703.1 Brevibacterium sp. GH443 2.3.1.2.5.1.1619 OTU 1 seq prokMSA_id:12516 X76566.1 Brevibacterium linens 2.3.1.2.5.1.1745 OTU 6 seqs prokMSA_id:12517 X76564.1 Brevibacterium casei prokMSA_id:12519 X76565.1 Brevibacterium epidermidis prokMSA_id:12520 X76567.1 Brevibacterium iodinum prokMSA_id:12521 X77451.1 Brevibacterium linens prokMSA_id:12522 X83813.1 Brevibacterium iodinum prokMSA_id:20188 AJ251418.1 Brevibacterium casei str. DSM 20657 2.3.1.2.6 Cellulomonadaceae 57 seqs 2.3.1.2.6.1 sf_1 57 seqs 2.3.1.2.6.1.1240 OTU 7 seqs prokMSA_id:24202 AB078854.1 Cellulomonadaceae str. WB16 prokMSA_id:28551 AB078853.1 Cellulomonadaceae str. WB15 prokMSA_id:32484 AB078847.1 Cellulomonadaceae str. WB9 prokMSA_id:42537 AB078844.1 Cellulomonadaceae str. WB6 prokMSA_id:47319 AB078850.1 Cellulomonadaceae str. WB12 prokMSA_id:47814 AB078848.1 Cellulomonadaceae str. WB10 prokMSA_id:50055 AB078852.1 Cellulomonadaceae str. WB14 2.3.1.2.6.1.1431 OTU 2 seqs prokMSA_id:25310 AB078818.1 Cellulomonadaceae str. K3 prokMSA_id:39459 AB078838.1 Cellulomonadaceae str. W6 2.3.1.2.6.1.1449 OTU 6 seqs prokMSA_id:25340 AB078834.1 Cellulomonadaceae str. Ke prokMSA_id:26813 AB078851.1 Cellulomonadaceae str. WB13 prokMSA_id:30724 AB078846.1 Cellulomonadaceae str. WB8 prokMSA_id:30843 AB078855.1 Cellulomonadaceae str. WB17 prokMSA_id:39890 AB078845.1 Cellulomonadaceae str. WB7 prokMSA_id:52372 AB078823.1 Cellulomonadaceae str. K10 2.3.1.2.6.1.1450 OTU 1 seq prokMSA_id:24489 AB078824.1 Cellulomonadaceae str. K12 2.3.1.2.6.1.1489 OTU 1 seq prokMSA_id:12155 M87484.1 Tropheryma whippelii 2.3.1.2.6.1.1586 OTU 23 seqs prokMSA_id:12300 X79459.1 Cellulomonas cellasea str. DSM 20118 prokMSA_id:12315 X79463.1 Cellulomonas flavigena str. NCIMB 8073 prokMSA_id:12316 AF140036.1 Cellulomonas flavigena str. GG prokMSA_id:12317 Y09656.1 Cellulomonas sp. str. 794 prokMSA_id:12318 AF064701.1 Cellulomonas persica str. I prokMSA_id:12320 X79457.1 Cellulomonas uda str. NCIMB 8200 prokMSA_id:12321 X79460.1 Cellulomonas fimi str. DSM 20113 prokMSA_id:12323 X83799.1 Cellulomonas flavigena prokMSA_id:12329 X79461.1 Cellulomonas gelida str. NCIMB 8076 prokMSA_id:12330 X83804.1 Cellulomonas cellasea prokMSA_id:12331 X79462.1 Cellulomonas biazotea str. DSM 20112 prokMSA_id:12332 AJ245568.1 Cellulomonas sp. str. GM13 prokMSA_id:12334 X83802.1 Cellulomonas biazotea prokMSA_id:12338 X83800.1 Cellulomonas gelida prokMSA_id:12342 X83801.1 Cellulomonas uda prokMSA_id:12348 X83803.1 Cellulomonas fimi prokMSA_id:18563 AB078828.1 Cellulomonadaceae str. KB8 prokMSA_id:19709 AB078857.1 Cellulomonadaceae str. Wa prokMSA_id:29059 AB078821.1 Cellulomonadaceae str. K6 prokMSA_id:29389 AB078822.1 Cellulomonadaceae str. K8 prokMSA_id:42792 AB078840.1 Cellulomonadaceae str. W10 prokMSA_id:47463 AF282627.1 Cellulomonas gelida prokMSA_id:61987 AJ292035.1 Cellulomonas sp. str. d6 2.3.1.2.6.1.1589 OTU 5 seqs prokMSA_id:12328 X83806.1 Cellulomonas turbata prokMSA_id:12340 X79454.1 Oerskovia turbata str. NCIMB 10587 prokMSA_id:24025 AF237956.1 Cellulomonas sp. UFZ-B529 prokMSA_id:32173 AJ314851.1 Oerskovia paurometabola str. DSM 14281 prokMSA_id:54867 AJ314849.1 Oerskovia jenensis str. DSM 46001 2.3.1.2.6.1.1592 OTU 1 seq prokMSA_id:46611 X92152.1 Lake Bogoria isolate 69B4 2.3.1.2.6.1.1725 OTU 1 seq prokMSA_id:43619 AB078849.1 Cellulomonadaceae str. WB11 2.3.1.2.6.1.1748 OTU 5 seqs prokMSA_id:12310 X83808.1 Promicromonospora citrea prokMSA_id:26352 Y18378.1 Beutenbergia cavernosa str. DSM 12333 prokMSA_id:44206 AJ400627.1 Salana multivorans str. Se-3111; DSM 13521; NRRL B-24118 prokMSA_id:72122 AB004731.1 Cellulomonas sp. str. IFO16063T prokMSA_id:72500 AJ487302.1 Promicromonospora vindobonensis str. V-45 = IFO 16525 2.3.1.2.6.1.1780 OTU 2 seqs prokMSA_id:12325 AB023367.2 Cellulomonas sp. IFO16246 str. IFO 16246 prokMSA_id:12357 AB023361.2 Cellulomonas sp. IFO16240 str. IFO 16240 2.3.1.2.6.1.1923 OTU 1 seq prokMSA_id:12346 AJ229245.1 Actinobacteria str. VeCb6 2.3.1.2.6.1.1952 OTU 1 seq prokMSA_id:12355 AB023362.2 Cellulomonas sp. IFO16241 str. IFO 16241 2.3.1.2.6.1.2061 OTU 1 seq prokMSA_id:38534 AB078841.1 rice straw paddy soil isolate str. WB2 2.3.1.2.7 Corynebacteriaceae 253 seqs 2.3.1.2.7.1 sf_1 253 seqs 2.3.1.2.7.1.1089 OTU 5 seqs prokMSA_id:13423 Y11200.1 Corynebacterium mucifaciens str. DMMZ 2278 prokMSA_id:13431 AF115936.1 Corynebacterium sp. clone MTcory3P prokMSA_id:13436 AF115947.1 Corynebacterium sp. clone MTcory19R prokMSA_id:72264 AF537600.1 Corynebacterium mucifaciens National Microbiology Laboratory Special identifier 01-0118 prokMSA_id:74212 AF537599.1 Corynebacterium mucifaciens National Microbiology Laboratory Special identifier 87-0436 2.3.1.2.7.1.1131 OTU 1 seq prokMSA_id:13405 X84680.1 Corynebacterium vitarumen 2.3.1.2.7.1.1148 OTU 1 seq prokMSA_id:13442 Y09045.1 Corynebacterium lipophiloflavum str. DMMZ 1944; CCUG 37336; DSM 44291 2.3.1.2.7.1.1162 OTU 6 seqs prokMSA_id:13454 Y09655.1 Corynebacterium sundsvallense str. CCUG 36622 prokMSA_id:13455 AF115942.1 Corynebacterium sp. clone MTcory17R prokMSA_id:13456 AF010474.1 Corynebacterium thomssenii prokMSA_id:69927 AF537605.1 Corynebacterium sundsvallense National Microbiology Laboratory Special identifier 93-0639 prokMSA_id:71061 AF537606.1 Corynebacterium sundsvallense National Microbiology Laboratory Special identifier 99-0121 prokMSA_id:72293 AF537607.1 Corynebacterium thomssenii National Microbiology Laboratory Special identifier 97-0130 2.3.1.2.7.1.1179 OTU 1 seq prokMSA_id:13449 U87821.1 Corynebacterium genitalium str. ATCC 33034 2.3.1.2.7.1.1192 OTU 11 seqs prokMSA_id:13483 X80499.1 Corynebacterium macginleyi prokMSA_id:13484 X80500.1 Corynebacterium accolens prokMSA_id:13486 X84245.1 "Corynebacterium fastidiosum" prokMSA_id:13487 X84437.1 "Corynebacterium segmentosum" prokMSA_id:25485 AF115928.1 Corynebacterium sp. clone MT4P prokMSA_id:43077 AJ405049.1 clone A3-K1 prokMSA_id:67684 AF490772.1 Corynebacterium macginleyi prokMSA_id:83558 AJ439347.1 Corynebacterium fastidiosum str. CIP103808 prokMSA_id:83750 AJ439346.1 Corynebacterium accolens str. CIP104783T (ATCC49724T) prokMSA_id:83943 AJ439344.1 Corynebacterium segmentosum str. CIP107068 (CCUG37878) prokMSA_id:84689 AJ439345.1 Corynebacterium macginleyi str. CIP104099T (ATCC51787T) 2.3.1.2.7.1.1196 OTU 2 seqs prokMSA_id:13363 X84251.1 Corynebacterium callunae prokMSA_id:13365 X82053.1 Corynebacterium callunae 2.3.1.2.7.1.1205 OTU 1 seq prokMSA_id:78722 AY189624.1 Homo sapiens outer ear canal clone EarCan097 2.3.1.2.7.1.1215 OTU 1 seq prokMSA_id:13451 U87817.1 Corynebacterium genitalium str. ATCC 33030 2.3.1.2.7.1.1232 OTU 1 seq prokMSA_id:13458 X82056.1 Corynebacterium ammoniagenes 2.3.1.2.7.1.1237 OTU 5 seqs prokMSA_id:13364 X89005.1 Corynebacterium sp. str. EL-180 prokMSA_id:18481 AB055964.1 Corynebacterium efficiens str. YS-52 prokMSA_id:22730 AB055963.1 Corynebacterium efficiens str. YS-314 prokMSA_id:55922 NC_004369.1 Corynebacterium efficiens prokMSA_id:71077 AB055965.1 Corynebacterium efficiens str. YS-155 2.3.1.2.7.1.1247 OTU 1 seq prokMSA_id:13459 X84440.1 Corynebacterium ammoniagenes 2.3.1.2.7.1.1272 OTU 1 seq prokMSA_id:13460 X89778.1 Corynebacterium sp. str. EL-68 2.3.1.2.7.1.1273 OTU 1 seq prokMSA_id:13361 Y12792.1 Corynebacterium glutamicum str. ATCC 13869 2.3.1.2.7.1.1281 OTU 1 seq prokMSA_id:13465 AB010906.1 Corynebacterium sp. str. QKT1393-078 Joya 2.3.1.2.7.1.1292 OTU 1 seq prokMSA_id:13366 X81913.1 Corynebacterium urealyticum 2.3.1.2.7.1.1300 OTU 1 seq prokMSA_id:13468 D37915.1 Corynebacterium pilosum 2.3.1.2.7.1.1303 OTU 1 seq prokMSA_id:13469 X81908.1 Corynebacterium pilosum 2.3.1.2.7.1.1327 OTU 3 seqs prokMSA_id:13395 X84248.1 Corynebacterium diphtheriae prokMSA_id:13398 X82059.1 Corynebacterium diphtheriae prokMSA_id:26734 A58083.1 Corynebacterium sp. 2.3.1.2.7.1.1332 OTU 1 seq prokMSA_id:13370 AB004730.1 Corynebacterium terpenotabidum str. IFO14764T 2.3.1.2.7.1.1338 OTU 7 seqs prokMSA_id:13495 X84438.1 Corynebacterium propinquum prokMSA_id:13496 X81917.1 Corynebacterium propinquum prokMSA_id:13497 X84258.1 Corynebacterium pseudodiphtheriticum prokMSA_id:13498 X81918.1 Corynebacterium pseudodiphtheriticum prokMSA_id:82696 AJ439343.1 Corynebacterium pseudodiphtheriticum str. CIP103420T (ATCC10700) prokMSA_id:84553 AY244786.1 Rothia mucilaginosa str. 2002-73856 prokMSA_id:85717 AY244785.1 Corynebacterium propinquum str. 2002-2301171 2.3.1.2.7.1.1357 OTU 1 seq prokMSA_id:13478 AF033314.1 Corynebacterium sp. 'CDC B8037' str. CDC B8037 'CDC 2.3.1.2.7.1.1374 OTU 4 seqs prokMSA_id:13432 AF115937.1 Corynebacterium sp. clone MTcory5K prokMSA_id:13434 AF115944.1 Corynebacterium sp. clone MTcory21R prokMSA_id:13435 AF115946.1 Corynebacterium sp. clone MTcory24T prokMSA_id:82663 AY244774.1 Corynebacterium sp. str. 2002-79006 2.3.1.2.7.1.1387 OTU 1 seq prokMSA_id:50892 AF267152.1 Corynebacterium casei str. LMG S-19264 2.3.1.2.7.1.1420 OTU 1 seq prokMSA_id:13485 Y09806.1 Corynebacterium mastitidis str. S-8; CECT 4843 2.3.1.2.7.1.1428 OTU 15 seqs prokMSA_id:13472 AJ012836.1 Corynebacterium simulans str. UCL301 prokMSA_id:13476 Y10999.1 Corynebacterium singulare str. IBS B52218; CCUG 37330 prokMSA_id:13481 AF115934.1 Corynebacterium sp. clone MTcory1P prokMSA_id:13482 AF115941.1 Corynebacterium sp. clone MTcory16R prokMSA_id:30005 AF220220.1 Corynebacterium nigricans str. CN-1 prokMSA_id:57711 AJ315961.1 Corynebacterium aurimucosum str. IMMIB R-222 prokMSA_id:57712 AJ309207.1 Corynebacterium aurimucosum str. IMMIB D-1488 DSM 44532 = NRRL B-24143 prokMSA_id:69059 AF537608.1 Corynebacterium nigricans str. NML National Microbiology Laboratory Special identifier 92-0360 prokMSA_id:70353 AF537603.1 Corynebacterium simulans National Microbiology Laboratory Special identifier 81-0613 prokMSA_id:73498 AF537604.1 Corynebacterium simulans National Microbiology Laboratory Special identifier 00-0186 prokMSA_id:86381 AY227208.1 Corynebacterium nigricans str. CN-3415 prokMSA_id:88549 AY321294.1 Corynebacterium nigricans str. NML91-0032 91-0032 prokMSA_id:104388 AY536426.1 Corynebacterium aurimucosum str. ATCC 700975 prokMSA_id:104536 AY536427.1 Corynebacterium aurimucosum str. NRRL B-24143 H2456 prokMSA_id:107679 AY546096.1 Corynebacterium aurimucosum str. ATCC 700540; CCUG 47034 CDC# B8037 2.3.1.2.7.1.1443 OTU 1 seq prokMSA_id:73330 AF537592.1 Corynebacterium coyleae National Microbiology Laboratory Special identifier 97-0171 2.3.1.2.7.1.1455 OTU 3 seqs prokMSA_id:13396 Z97069.1 Corynebacterium durum str. IBS G15036 prokMSA_id:58295 AF543285.1 Corynebacterium durum str. ChDC OS33 prokMSA_id:71635 AF537593.1 Corynebacterium durum National Microbiology Laboratory Special identifier 99-0047 2.3.1.2.7.1.1464 OTU 2 seqs prokMSA_id:13391 X82063.1 Corynebacterium kutscheri prokMSA_id:13393 X81871.1 Corynebacterium kutscheri 2.3.1.2.7.1.1482 OTU 4 seqs prokMSA_id:13386 AJ222815.1 Corynebacterium variabile str. DSM 20132 prokMSA_id:13387 AJ222816.1 Corynebacterium variabile str. DSM 20536 prokMSA_id:13388 AJ222817.1 strain was previously classified as Arthrobacter globiformis isolate str. LMG 3820 prokMSA_id:43991 AF276640.1 Corynebacterium sp. str. IC10 2.3.1.2.7.1.1483 OTU 2 seqs prokMSA_id:13477 X84678.1 Corynebacterium minutissimum prokMSA_id:13479 X84679.1 Corynebacterium minutissimum 2.3.1.2.7.1.1492 OTU 14 seqs prokMSA_id:13369 Y13024.1 Corynebacterium falsenii CCUG 33651 prokMSA_id:13377 AF115940.1 Corynebacterium sp. clone MTcory14R prokMSA_id:13380 X82062.1 Corynebacterium jeikeium prokMSA_id:13419 X81872.1 "Corynebacterium pseudogenitalium" prokMSA_id:13453 X81905.1 Corynebacterium sp. prokMSA_id:61783 AJ314919.1 Corynebacterium appendicis str. DSM 44531T IMMIB R-3491 prokMSA_id:64184 AF322369.1 Corynebacterium sp. 'Triatoma infestans' prokMSA_id:71101 AF537594.1 Corynebacterium falsenii National Microbiology Laboratory Special identifier 97-0205 prokMSA_id:73590 AF287754.1 Corynebacterium sp. oral strain str. A43SC prokMSA_id:86131 AY244775.1 Corynebacterium sp. str. 2002-2300500 prokMSA_id:100589 AJ620367.1 Brevibacterium stationis str. LMG 21670 prokMSA_id:103471 AY725811.1 Corynebacterium sp. C3 prokMSA_id:109452 AY677186.1 Corynebacterium tuscaniae str. ISS-5309 prokMSA_id:112329 AF311408.1 Corynebacterium bovis str. 69 2.3.1.2.7.1.1493 OTU 21 seqs prokMSA_id:13488 X84247.1 "Corynebacterium tuberculostearicum" prokMSA_id:13490 AF115935.1 Corynebacterium sp. clone MTcory2P prokMSA_id:13491 AF115943.1 Corynebacterium sp. clone MTcory20R prokMSA_id:13492 X80498.1 Corynebacterium species prokMSA_id:13494 AF018035.1 neolithic glacier mummy clone I-109 prokMSA_id:19533 AJ291838.1 Corynebacterium sp. IrT-R5M2-141 prokMSA_id:22102 AF234634.1 Corynebacterium sp. 61720 prokMSA_id:23875 AF115953.1 Corynebacterium sp. clone MT9M86 prokMSA_id:82489 AJ438045.1 Corynebacterium tuberculostearicum str. CIP102346 prokMSA_id:82584 AJ438051.1 Corynebacterium tuberculostearicum str. CIP107067 prokMSA_id:82897 AJ438042.1 Corynebacterium tuberculostearicum str. CIP102645 prokMSA_id:83125 AJ438041.1 Corynebacterium tuberculostearicum str. CIP102857 prokMSA_id:83910 AJ438047.1 Corynebacterium tuberculostearicum str. CIP102124 prokMSA_id:84297 AJ438049.1 Corynebacterium tuberculostearicum str. CIP101775 prokMSA_id:84459 AJ439348.1 Corynebacterium tuberculostearicum str. CIP106714 (ATCC33035) (CCUG28787) prokMSA_id:84542 AJ438046.1 Corynebacterium tuberculostearicum str. CIP102211 prokMSA_id:84608 AJ438044.1 Corynebacterium tuberculostearicum str. CIP102590 prokMSA_id:85185 AJ438048.1 Corynebacterium tuberculostearicum str. CIP102076 prokMSA_id:85890 AJ438043.1 Corynebacterium tuberculostearicum str. CIP102622 prokMSA_id:86463 AJ438050.1 Corynebacterium tuberculostearicum str. CIP107291 prokMSA_id:89305 AF443574.1 cells extracted semiarid soil clone O-F-5 2.3.1.2.7.1.1500 OTU 2 seqs prokMSA_id:13418 X83955.1 Corynebacterium argentoratense prokMSA_id:69384 AF537589.1 Corynebacterium argentoratense National Microbiology Laboratory Special identifier 98-0075 2.3.1.2.7.1.1517 OTU 16 seqs prokMSA_id:13347 X84446.1 Corynebacterium xerosis prokMSA_id:13348 AF145257.1 Corynebacterium xerosis str. 71376 prokMSA_id:13349 AF024653.1 Corynebacterium xerosis str. K132 prokMSA_id:13350 X81914.1 Corynebacterium xerosis prokMSA_id:13352 X82050.1 "Corynebacterium asperum" prokMSA_id:13353 X84244.1 Corynebacterium amycolatum prokMSA_id:13354 AF115939.1 Corynebacterium sp. clone MTcory13R prokMSA_id:13355 X82057.1 Corynebacterium amycolatum prokMSA_id:13471 X84442.1 Corynebacterium striatum prokMSA_id:37739 AJ292763.1 Corynebacterium freneyi str. 20395347 prokMSA_id:45813 AY008302.1 Corynebacterium striatum RV5_00 prokMSA_id:73485 AJ292762.1 Corynebacterium freneyi str. 20695110 prokMSA_id:82042 AY210513.1 Corynebacterium freneyi str. 116594 prokMSA_id:83313 AY230773.1 Corynebacterium sp. 'Smarlab BioMol-2301292' str. Smarlab BioMol 2301292 'Smarlab prokMSA_id:86061 AY226509.1 Corynebacterium halotolerans str. YIM70093 1042700198-028057-21589 prokMSA_id:109854 AY831726.1 Corynebacterium amycolatum 2.3.1.2.7.1.1558 OTU 1 seq prokMSA_id:50265 AF227828.1 Corynebacterium sp. str. 61722 2.3.1.2.7.1.1575 OTU 2 seqs prokMSA_id:13399 X84443.1 Corynebacterium matruchotii prokMSA_id:43893 AF287755.1 human subgingival plaque clone AK153 2.3.1.2.7.1.1590 OTU 3 seqs prokMSA_id:13421 X82058.1 Corynebacterium cystitidis prokMSA_id:13428 X84252.1 Corynebacterium cystitidis prokMSA_id:13440 D37914.1 Corynebacterium cystitidis 2.3.1.2.7.1.1608 OTU 1 seq prokMSA_id:25532 AJ295841.1 Corynebacterium testudinoris str. CCUG 41823T 2.3.1.2.7.1.1642 OTU 1 seq prokMSA_id:13420 X73976.1 "Corynebacterium otitidis" 2.3.1.2.7.1.1656 OTU 1 seq prokMSA_id:13424 U87819.1 Corynebacterium genitalium str. ATCC 33032 2.3.1.2.7.1.1660 OTU 1 seq prokMSA_id:13427 AF115945.1 Corynebacterium sp. clone MTcory11W 2.3.1.2.7.1.1668 OTU 6 seqs prokMSA_id:13392 X81907.1 Corynebacterium pseudotuberculosis prokMSA_id:13394 X81916.1 Corynebacterium pseudotuberculosis prokMSA_id:13397 X81911.1 Corynebacterium ulcerans prokMSA_id:13400 X84256.1 Corynebacterium ulcerans prokMSA_id:13402 X81912.1 Corynebacterium ulcerans prokMSA_id:13414 X84255.1 Corynebacterium pseudotuberculosis 2.3.1.2.7.1.1698 OTU 2 seqs prokMSA_id:13422 X82055.1 Corynebacterium afermentans prokMSA_id:13457 X82054.1 Corynebacterium afermentans 2.3.1.2.7.1.1708 OTU 2 seqs prokMSA_id:13463 X84441.1 Corynebacterium flavescens prokMSA_id:13466 X82060.1 Corynebacterium flavescens 2.3.1.2.7.1.1723 OTU 1 seq prokMSA_id:13439 X81904.1 Corynebacterium sp. 2.3.1.2.7.1.1729 OTU 2 seqs prokMSA_id:13445 Y09044.1 Corynebacterium imitans str. 2023 prokMSA_id:69614 AF537597.1 Corynebacterium imitans National Microbiology Laboratory Special identifier 01-0063 2.3.1.2.7.1.1737 OTU 1 seq prokMSA_id:13437 Y09569.1 Corynebacterium camporealensis str. CRS-51; CECT 4897 2.3.1.2.7.1.1763 OTU 1 seq prokMSA_id:13374 U87818.1 Corynebacterium genitalium str. ATCC 33031 2.3.1.2.7.1.1767 OTU 1 seq prokMSA_id:13375 U87816.1 Corynebacterium jeikeium str. ATCC 43216 2.3.1.2.7.1.1776 OTU 1 seq prokMSA_id:13378 U87820.1 Corynebacterium genitalium str. ATCC 33033 2.3.1.2.7.1.1783 OTU 1 seq prokMSA_id:28246 AF311413.1 Corynebacterium bovis str. 101 2.3.1.2.7.1.1785 OTU 1 seq prokMSA_id:25821 AJ297402.1 Corynebacterium capitovis str. CCUG 39779 () 2.3.1.2.7.1.1803 OTU 4 seqs prokMSA_id:13499 Y15886.1 Corynebacterium confusum str. DMMZ 2439 prokMSA_id:13500 Y15887.1 Corynebacterium confusum str. DMMZ 3259 prokMSA_id:60234 AJ429234.1 Corynebacterium spheniscorum str. CCUG 45512 prokMSA_id:73184 AF537591.1 Corynebacterium confusum National Microbiology Laboratory Special identifier 99-0145 2.3.1.2.7.1.1815 OTU 1 seq prokMSA_id:13467 X84246.1 Corynebacterium pilosum 2.3.1.2.7.1.1820 OTU 2 seqs prokMSA_id:13373 U87823.1 Corynebacterium jeikeium str. ATCC 43734 prokMSA_id:13379 U87815.1 Corynebacterium jeikeium str. ATCC 43217 2.3.1.2.7.1.1826 OTU 2 seqs prokMSA_id:13390 Y10077.1 Corynebacterium kroppenstedtii str. CCUG 35717 prokMSA_id:69669 AF537598.1 Corynebacterium kroppenstedtii National Microbiology Laboratory Special identifier 00-0244 2.3.1.2.7.1.1837 OTU 4 seqs prokMSA_id:13401 D37805.1 Corynebacterium renale prokMSA_id:13410 X81909.1 Corynebacterium renale prokMSA_id:13412 M29553.1 Corynebacterium renale prokMSA_id:13413 X84249.1 Corynebacterium renale 2.3.1.2.7.1.1838 OTU 2 seqs prokMSA_id:13448 Y14651.1 Corynebacterium riegelii str. dmmz 2415 prokMSA_id:69866 AF537602.1 Corynebacterium riegelii National Microbiology Laboratory Special identifier 99-0185 2.3.1.2.7.1.1840 OTU 1 seq prokMSA_id:38871 AF115929.1 Corynebacterium sp. clone MT2R 2.3.1.2.7.1.1844 OTU 1 seq prokMSA_id:37997 AJ401282.1 Corynebacterium felinum 2.3.1.2.7.1.1884 OTU 1 seq prokMSA_id:13493 U87822.1 Corynebacterium tuberculostearicum str. ATCC 33035 2.3.1.2.7.1.1922 OTU 2 seqs prokMSA_id:18932 AF262996.1 Corynebacterium sp. str. ATCC 43833 prokMSA_id:33029 AF260434.1 Corynebacterium sp. str. ATCC 43833 2.3.1.2.7.1.1925 OTU 13 seqs prokMSA_id:13358 X84257.1 Corynebacterium glutamicum prokMSA_id:13359 X84240.1 "Corynebacterium acetoacidophilum" prokMSA_id:13360 Z46753.1 Corynebacterium glutamicum prokMSA_id:13362 X82061.1 Corynebacterium glutamicum prokMSA_id:34960 Y11001.1 Corynebacterium sp. str. T14433 prokMSA_id:64400 AF426148.1 Corynebacterium glutamicum str. WS1912 prokMSA_id:64451 AY017100.1 Corynebacterium glutamicum str. ATCC 13287 prokMSA_id:70310 AY017096.1 Corynebacterium glutamicum str. ATCC 13059 prokMSA_id:70328 AY017097.1 Corynebacterium glutamicum str. ATCC 13060 prokMSA_id:71194 AF426147.1 Corynebacterium glutamicum str. WS1863 prokMSA_id:73254 AF426145.1 Corynebacterium glutamicum str. NCIB 9666 prokMSA_id:73358 AY017101.1 Corynebacterium glutamicum str. ATCC 15025 prokMSA_id:73587 AY017098.1 Corynebacterium glutamicum str. ATCC 13232 2.3.1.2.7.1.1930 OTU 2 seqs prokMSA_id:13441 X84241.1 Corynebacterium mycetoides prokMSA_id:13444 X82066.1 Corynebacterium mycetoides 2.3.1.2.7.1.2006 OTU 7 seqs prokMSA_id:13425 X86688.1 Corynebacterium glucuronolyticum prokMSA_id:23811 AJ277970.1 Corynebacterium glucuronolyticum str. COR 232 prokMSA_id:27538 AF115950.1 Corynebacterium sp. clone MT25Y prokMSA_id:31488 AF115952.1 Corynebacterium sp. clone MT30Y prokMSA_id:38303 AJ277971.1 Corynebacterium glucuronolyticum str. COR 252 prokMSA_id:73162 AF537596.1 Corynebacterium glucuronolyticum National Microbiology Laboratory Special identifier 98-0098 prokMSA_id:74005 AF537595.1 Corynebacterium glucuronolyticum National Microbiology Laboratory Special identifier 98-0013 2.3.1.2.7.1.2035 OTU 2 seqs prokMSA_id:13371 AJ243819.1 Corynebacterium auriscanis str. CCUG 39784 prokMSA_id:19141 AJ243820.1 Corynebacterium auriscanis str. CCUG 39783 2.3.1.2.7.1.2038 OTU 1 seq prokMSA_id:27896 Y11000.1 Corynebacterium sp. str. B55443 2.3.1.2.7.1.2059 OTU 39 seqs prokMSA_id:13381 X84444.1 Corynebacterium bovis prokMSA_id:13382 D38575.1 Corynebacterium bovis prokMSA_id:13383 X82051.1 Corynebacterium bovis prokMSA_id:13384 AJ222965.1 Corynebacterium bovis 5232 and 4428/4 prokMSA_id:17694 AF311436.1 Corynebacterium bovis str. 238 prokMSA_id:19039 AF311422.1 Corynebacterium bovis str. 172 prokMSA_id:21189 AF311425.1 Corynebacterium bovis str. 196 prokMSA_id:21243 AF311414.1 Corynebacterium bovis str. 114 prokMSA_id:23835 AF311434.1 Corynebacterium bovis str. 234 prokMSA_id:23997 AF311389.1 Corynebacterium bovis str. 32 prokMSA_id:24259 AF311402.1 Corynebacterium bovis str. 62 prokMSA_id:26616 AF311395.1 Corynebacterium bovis str. 41 prokMSA_id:27527 AF311397.1 Corynebacterium bovis str. 51 prokMSA_id:30812 AF311393.1 Corynebacterium bovis str. 38 prokMSA_id:31503 AF311419.1 Corynebacterium bovis str. 143 prokMSA_id:33060 AF311415.1 Corynebacterium bovis str. 115 prokMSA_id:34732 AF311400.1 Corynebacterium bovis str. 54 prokMSA_id:34906 AF311407.1 Corynebacterium bovis str. 68 prokMSA_id:35805 AF311410.1 Corynebacterium bovis str. 89 prokMSA_id:35923 AF311411.1 Corynebacterium bovis str. 96 prokMSA_id:37219 AF311420.1 Corynebacterium bovis str. 150 prokMSA_id:37493 AF311390.1 Corynebacterium bovis str. 33 prokMSA_id:37725 AF311418.1 Corynebacterium bovis str. 140 prokMSA_id:37776 AF311417.1 Corynebacterium bovis str. 139 prokMSA_id:38365 AF311406.1 Corynebacterium bovis str. 67 prokMSA_id:43368 AF311396.1 Corynebacterium bovis str. 50 prokMSA_id:43566 AF311394.1 Corynebacterium bovis str. 39 prokMSA_id:44972 AF311416.1 Corynebacterium bovis str. 136 prokMSA_id:45755 AF311423.1 Corynebacterium bovis str. 184 prokMSA_id:45770 AF311431.1 Corynebacterium bovis str. 231 prokMSA_id:46369 AF311428.1 Corynebacterium bovis str. 225 prokMSA_id:47588 AF311401.1 Corynebacterium bovis str. 55 prokMSA_id:48907 AF311424.1 Corynebacterium bovis str. 185 prokMSA_id:51875 AF311435.1 Corynebacterium bovis str. 236 prokMSA_id:52118 AF311433.1 Corynebacterium bovis str. 233 prokMSA_id:74552 AF311391.1 Corynebacterium bovis str. 34 prokMSA_id:75132 AY168882.1 Corynebacterium bovis prokMSA_id:111459 AF311409.1 Corynebacterium bovis str. 70 prokMSA_id:112313 AF311427.1 Corynebacterium bovis str. 216 2.3.1.2.8 Dermabacteraceae 29 seqs 2.3.1.2.8.1 sf_1 29 seqs 2.3.1.2.8.1.1323 OTU 4 seqs prokMSA_id:12533 X91034.1 Dermabacter hominis prokMSA_id:12534 X76728.1 Dermabacter hominis prokMSA_id:25478 AF343728.1 Dermabacter hominis prokMSA_id:109591 AY853712.1 Dermabacter hominis 2.3.1.2.8.1.1446 OTU 1 seq prokMSA_id:78446 AJ537574.1 Brachybacterium muris str. C3H-21 2.3.1.2.8.1.1504 OTU 7 seqs prokMSA_id:19170 AJ415381.1 Brachybacterium sacelli LMG 20339 prokMSA_id:29857 AJ415379.1 Brachybacterium fresconis LMG 20333 prokMSA_id:50941 AJ415378.1 Brachybacterium fresconis LMG 20336 T prokMSA_id:70437 AJ415383.1 Brachybacterium sacelli LMG 20342 prokMSA_id:70869 AJ415384.1 Brachybacterium sacelli LMG 20345 T prokMSA_id:73577 AJ415382.1 Brachybacterium sacelli LMG 20343 prokMSA_id:74355 AJ415380.1 Brachybacterium sacelli LMG 20338 2.3.1.2.8.1.1677 OTU 8 seqs prokMSA_id:12528 X91030.1 Brachybacterium conglomeratum prokMSA_id:30645 AF324202.2 Brachybacterium sp. V589 str. V15 prokMSA_id:71795 AJ415377.1 Brachybacterium paraconglomeratum LMG 19861 T prokMSA_id:77571 AY167842.1 Brachybacterium conglomeratum str. SAFR-049 prokMSA_id:77876 AB098579.1 Brachybacterium paraconglomeratum str. TUT1011 prokMSA_id:101439 AY741723.1 Brachybacterium sp. str. SKJH-25 prokMSA_id:108094 AJ786818.1 Brachybacterium sp. R-23108 prokMSA_id:108096 AJ786820.1 Brachybacterium sp. R-23117 2.3.1.2.8.1.1736 OTU 1 seq prokMSA_id:31079 AJ415376.1 Brachybacterium rhamnosum LMG 19848 T 2.3.1.2.8.1.1761 OTU 7 seqs prokMSA_id:12523 X83810.1 Brachybacterium faecium prokMSA_id:12526 X91032.1 Brachybacterium faecium prokMSA_id:12529 X91657.1 Brachybacterium tyrofermentans prokMSA_id:12530 AF041790.1 Brachybacterium sp. str. S21F1 prokMSA_id:12531 X91031.1 Brachybacterium alimentarium prokMSA_id:80363 AF468445.1 Arctic sea ice ARK9984 prokMSA_id:81998 AB101583.1 Jellyfish-degrading isolate str. TN-2003 2.3.1.2.8.1.2053 OTU 1 seq prokMSA_id:12532 X91033.1 Brachybacterium nesterenkovii 2.3.1.2.9 Dermacoccaceae 3 seqs 2.3.1.2.9.1 sf_1 3 seqs 2.3.1.2.9.1.1108 OTU 1 seq prokMSA_id:52125 AJ297722.1 Kytococcus schroeteri str. Muenster 2000 2.3.1.2.9.1.1716 OTU 1 seq prokMSA_id:12537 X87757.1 Dermacoccus nishinomyaensis 2.3.1.2.9.1.1718 OTU 1 seq prokMSA_id:12538 Y14152.1 Demetria terragena HK1 0089T 2.3.1.3 Bifidobacteriales 85 seqs 2.3.1.3.1 Bifidobacteriaceae 85 seqs 2.3.1.3.1.1 sf_1 85 seqs 2.3.1.3.1.1.1109 OTU 6 seqs prokMSA_id:12625 D86190.1 Bifidobacterium boum str. JCM1211 prokMSA_id:17245 AF321295.1 Bifidobacterium sp. group I-3 prokMSA_id:25225 AB034094.1 rumen clone 3C3d-20 prokMSA_id:35146 AF357558.1 mpn-isolate group 10 prokMSA_id:42077 AB034095.1 rumen clone 4C3d-16 prokMSA_id:55846 AY148470.1 Bifidobacterium thermacidophilum porcinum subsp. suis str. P3-14 subsp. 2.3.1.3.1.1.1170 OTU 1 seq prokMSA_id:49417 AF333390.1 Bifidobacterium pseudocatenulatum str. F34 2.3.1.3.1.1.1214 OTU 11 seqs prokMSA_id:12636 D86194.1 Bifidobacterium pseudolongum subsp. globosum str. JCM5820 prokMSA_id:12637 D86195.1 Bifidobacterium subsp. pseudolongum str. JCM1205 prokMSA_id:69112 AY166513.1 Bifidobacterium pseudolongum subsp. globosum str. 1-23-3 prokMSA_id:69376 AY166518.1 Bifidobacterium pseudolongum subsp. globosum str. 09-25-2 prokMSA_id:69472 AY166514.1 Bifidobacterium pseudolongum subsp. globosum str. 1-25-3 prokMSA_id:69681 AY166517.1 Bifidobacterium pseudolongum subsp. globosum str. 7#-10-11 prokMSA_id:69743 AY166515.1 Bifidobacterium pseudolongum subsp. globosum str. 02-2 prokMSA_id:70773 AY166519.1 Bifidobacterium pseudolongum subsp. globosum str. Fb9 prokMSA_id:72459 AY166520.1 Bifidobacterium pseudolongum subsp. globosum str. MU8 prokMSA_id:78584 AY174106.1 Bifidobacterium subsp. pseudolongum str. T30 subsp. prokMSA_id:78906 AY174105.1 Bifidobacterium pseudolongum subsp. globosum str. T29 subsp. 2.3.1.3.1.1.1253 OTU 1 seq prokMSA_id:24773 AF321296.1 Bifidobacterium sp. group II-3 2.3.1.3.1.1.1276 OTU 1 seq prokMSA_id:12618 AB016246.1 Bifidobacterium thermophilum 2.3.1.3.1.1.1290 OTU 1 seq prokMSA_id:12619 AB029087.1 Scardovia inopinata str. DSM10107 2.3.1.3.1.1.1319 OTU 1 seq prokMSA_id:12620 D89331.1 Parascardovia denticolens str. DSM10105 2.3.1.3.1.1.1320 OTU 1 seq prokMSA_id:12621 D89332.1 Scardovia inopinata str. DSM 10107 2.3.1.3.1.1.1335 OTU 4 seqs prokMSA_id:12617 U25952.1 Bifidobacterium bifidum prokMSA_id:12624 U25951.1 Bifidobacterium bifidum prokMSA_id:12627 S83624.1 Bifidobacterium bifidum prokMSA_id:102411 AY694148.1 Bifidobacterium bifidum str. BF2 2.3.1.3.1.1.1351 OTU 1 seq prokMSA_id:78797 AY174108.1 Bifidobacterium psychraerophilum str. T16 2.3.1.3.1.1.1352 OTU 2 seqs prokMSA_id:17910 AF227870.1 Bifidobacterium sp. str. 65947 prokMSA_id:63018 AJ307005.1 Bifidobacterium scardovii str. CCUG 13008 2.3.1.3.1.1.1434 OTU 1 seq prokMSA_id:19706 AF458075.1 Gardnerella vaginalis str. RLUH-1 2.3.1.3.1.1.1444 OTU 3 seqs prokMSA_id:78555 AY174104.1 Aeriscardovia aeriphila str. T4 prokMSA_id:78586 AY174107.1 Aeriscardovia aeriphila str. T6 prokMSA_id:87249 AY278612.1 Bifidobacteriaceae genomosp. C1 2.3.1.3.1.1.1465 OTU 8 seqs prokMSA_id:12630 X89111.1 Bifidobacterium sp. prokMSA_id:12631 D86185.1 Bifidobacterium animalis str. JCM1190 prokMSA_id:42998 AB027536.1 Bifidobacterium animalis str. Bb 12 prokMSA_id:44833 AB050138.1 Bifidobacterium animalis str. YIT 4090 prokMSA_id:48030 AB050136.1 Bifidobacterium animalis str. YIT 4121 prokMSA_id:51788 AJ311604.1 Bifidobacterium longum bv. Infantis str. Y1 bv. prokMSA_id:52295 AB050137.1 Bifidobacterium animalis str. YIT 4119 prokMSA_id:102896 AY700230.1 Bifidobacterium animalis str. BL2 2.3.1.3.1.1.1580 OTU 1 seq prokMSA_id:43993 D86192.1 Bifidobacterium merycicum str. JCM8219 2.3.1.3.1.1.1597 OTU 2 seqs prokMSA_id:12622 D89378.1 Bifidobacterium subtile str. DSM20096 prokMSA_id:12623 D89379.1 Bifidobacterium subtile str. JCM7109 2.3.1.3.1.1.1704 OTU 1 seq prokMSA_id:12604 D86188.1 Bifidobacterium indicum str. JCM1302 2.3.1.3.1.1.1710 OTU 1 seq prokMSA_id:12606 D86182.1 Bifidobacterium angulatum str. ATCC27535 2.3.1.3.1.1.1793 OTU 1 seq prokMSA_id:12632 D86186.1 Bifidobacterium choerinum str. ATCC27686 2.3.1.3.1.1.1825 OTU 1 seq prokMSA_id:12640 D86193.1 Bifidobacterium magnum str. JCM8219 2.3.1.3.1.1.1835 OTU 3 seqs prokMSA_id:32427 AJ270492.1 faeces isolate str. T1-817 prokMSA_id:72820 AF253365.1 intestine newborn human infant clone S6C prokMSA_id:102430 AY513712.1 Bifidobacterium breve str. KB 92 2.3.1.3.1.1.1875 OTU 7 seqs prokMSA_id:12645 D86184.1 Bifidobacterium longum bv. Infantis str. ATCC15697 bv. prokMSA_id:55278 AY151399.1 Bifidobacterium longum str. KB 6 prokMSA_id:56345 AF491832.1 Bifidobacterium breve str. JCM 1273 prokMSA_id:57338 AY151398.1 Bifidobacterium longum bv. Infantis str. KB 10 bv. prokMSA_id:68376 AF491836.1 Bifidobacterium breve str. JCM 7019 prokMSA_id:68379 AF491833.1 Bifidobacterium breve str. JCM 7020 prokMSA_id:71297 AF321297.1 Bifidobacterium sp. group III-3 2.3.1.3.1.1.1880 OTU 7 seqs prokMSA_id:12646 D86191.1 Bifidobacterium gallinarum str. JCM6291 prokMSA_id:12647 D86196.1 Bifidobacterium pullorum str. JCM1214 prokMSA_id:28109 AJ311605.1 Bifidobacterium breve str. Y8 prokMSA_id:37229 AJ311606.1 Bifidobacterium longum biovar Longum str. Y10 biovar prokMSA_id:77771 AY172657.1 Bifidobacterium breve str. KB 72 prokMSA_id:78304 AY172656.1 Bifidobacterium breve str. KB 69 prokMSA_id:82861 AY267190.1 Bifidobacterium breve str. KB76 2.3.1.3.1.1.1915 OTU 5 seqs prokMSA_id:63869 AJ278695.1 Bifidobacterium urinalis prokMSA_id:63870 AJ278694.1 Bifidobacterium urinalis str. CCUG 26938 prokMSA_id:72858 AF385524.1 Bifidobacterium sp. oral strain str. H6-M4 oral prokMSA_id:111587 AY880049.1 Bifidobacterium sp. S18-11 prokMSA_id:111606 AY880048.1 Bifidobacterium sp. S13-05 2.3.1.3.1.1.1967 OTU 6 seqs prokMSA_id:12610 D86187.1 Bifidobacterium pseudocatenulatum str. JCM1200 prokMSA_id:12613 D86183.1 Bifidobacterium dentium str. ATCC27534 prokMSA_id:21503 AF432082.1 Bifidobacterium catenulatum str. ATCC27539 prokMSA_id:29658 AF287759.1 Bifidobacterium sp. oral strain str. A32ED oral prokMSA_id:45910 AF275893.1 derived Homo sapiens fecal sample clone 9B sp. prokMSA_id:70122 AF253364.1 intestine newborn human infant clone N55G 2.3.1.3.1.1.1977 OTU 1 seq prokMSA_id:34238 AF371711.1 phylotype OTU-325 swine intestine clone p-3348-23G2 2.3.1.3.1.1.1987 OTU 1 seq prokMSA_id:70349 AF287758.1 human subgingival plaque clone CX010 2.3.1.3.1.1.2040 OTU 6 seqs prokMSA_id:12615 D86197.1 Bifidobacterium ruminantium str. JCM8222 prokMSA_id:16594 AF275881.1 Bifidobacterium adolescentis str. E-981074T prokMSA_id:22676 AF275883.1 derived Homo sapiens fecal sample clone 15B sp. prokMSA_id:30243 AF275882.1 Bifidobacterium adolescentis str. E-981074T prokMSA_id:37674 AF275890.1 derived Homo sapiens fecal sample clone 7B sp. prokMSA_id:39484 AF275885.1 derived Homo sapiens fecal sample clone 15A sp. 2.3.1.4 Coriobacteriales 35 seqs 2.3.1.4.1 Coriobacteriaceae 35 seqs 2.3.1.4.1.1 sf_1 34 seqs 2.3.1.4.1.1.1095 OTU 1 seq prokMSA_id:39422 AF276453.1 PCB-contaminated St. Lawrence River sediment clone RFLP 21E 2.3.1.4.1.1.1112 OTU 1 seq prokMSA_id:27160 AF371712.1 phylotype OTU-327 swine intestine clone p-3423-SwA2 2.3.1.4.1.1.1145 OTU 3 seqs prokMSA_id:11374 AF079505.1 Denitrobacterium detoxificans str. NPOH2 prokMSA_id:11375 AF079506.1 Denitrobacterium detoxificans str. NPOH3 prokMSA_id:11376 AF079507.1 Denitrobacterium detoxificans str. MAJ1 2.3.1.4.1.1.1220 OTU 5 seqs prokMSA_id:25274 AB031061.1 Collinsella stercoris str. RCA55-54 prokMSA_id:36110 AB037382.1 Collinsella stercoris str. RCA55-27 prokMSA_id:36306 AB031059.1 Collinsella stercoris str. RCA55-4 prokMSA_id:37392 AB037384.1 Collinsella stercoris str. RCA55-49 prokMSA_id:38088 AB031060.1 Collinsella stercoris str. RCA55-34 2.3.1.4.1.1.1226 OTU 1 seq prokMSA_id:11383 X67150.1 Atopobium parvulum 2.3.1.4.1.1.1294 OTU 1 seq prokMSA_id:60552 AF426827.1 root canal clone 1+7-15 2.3.1.4.1.1.1382 OTU 4 seqs prokMSA_id:11372 AB011817.1 Eggerthella lenta str. JCM9979 prokMSA_id:16304 AF292375.1 Eggerthella lenta str. ATCC25559 prokMSA_id:34668 AF304434.1 Eggerthella sp. str. MLG043 prokMSA_id:72748 AF227849.1 environmental isolate 82345 2.3.1.4.1.1.1383 OTU 2 seqs prokMSA_id:11380 X67148.1 Atopobium minutum prokMSA_id:74853 S44204.1 Atopobium minutum 2.3.1.4.1.1.1485 OTU 1 seq prokMSA_id:31818 AJ245921.1 Coriobacterium sp. str. EKSO3 2.3.1.4.1.1.1510 OTU 1 seq prokMSA_id:29393 AF292374.2 Olsenella profusa str. D315A-29 2.3.1.4.1.1.1659 OTU 1 seq prokMSA_id:35301 AJ251324.1 Atopobium oviles str. A2 2.3.1.4.1.1.1790 OTU 4 seqs prokMSA_id:24647 AB031062.1 Collinsella stercoris str. RCA55-56 prokMSA_id:38784 AB037383.1 Collinsella intestinalis str. RCA56-80 prokMSA_id:44613 AB037381.1 Collinsella stercoris str. RCA55-5 prokMSA_id:46935 AB031063.1 Collinsella intestinalis str. RCA56-68 2.3.1.4.1.1.1800 OTU 1 seq prokMSA_id:75442 AJ534681.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN100 2.3.1.4.1.1.1924 OTU 1 seq prokMSA_id:11384 X67149.1 Atopobium rimae 2.3.1.4.1.1.1958 OTU 2 seqs prokMSA_id:43946 Y17195.1 Atopobium vaginae str. CCUG 38953 prokMSA_id:98908 AF325325.1 Atopobium vaginae VA14183_00 2.3.1.4.1.1.1959 OTU 1 seq prokMSA_id:11366 AF101240.1 Slackia exigua str. ATCC 700122 2.3.1.4.1.1.1962 OTU 1 seq prokMSA_id:11367 X79048.1 Coriobacterium glomerans 2.3.1.4.1.1.2001 OTU 1 seq prokMSA_id:42186 AB034096.1 rumen clone 4C3d-3 2.3.1.4.1.1.2012 OTU 1 seq prokMSA_id:11379 AB015945.1 Atopobium fossor str. JCM 9981 2.3.1.4.1.1.2027 OTU 1 seq prokMSA_id:37460 AJ408156.1 equine large intestine clone ML10 2.3.1.4.1.2 sf_3 1 seq 2.3.1.4.1.2.1963 OTU 1 seq prokMSA_id:11368 AB011814.1 Collinsella aerofaciens str. JCM7790 2.3.1.5 Rubrobacterales 32 seqs 2.3.1.5.1 Rubrobacteraceae 32 seqs 2.3.1.5.1.1 sf_1 32 seqs 2.3.1.5.1.1.1107 OTU 3 seqs prokMSA_id:11357 X87135.1 Rubrobacter xylanophilus prokMSA_id:11360 AJ243871.1 Rubrobacter xylanophilus str. RSPS-15 prokMSA_id:48248 AF324203.1 actinobacterium clone pD4 2.3.1.5.1.1.1115 OTU 1 seq prokMSA_id:41603 AJ298579.1 wall surface clone Hb7-K4 2.3.1.5.1.1.1210 OTU 2 seqs prokMSA_id:32106 AF479791.1 Rubrobacter taiwanensis str. LS-286 prokMSA_id:36731 AF465803.1 Rubrobacter taiwanensis str. LS-293 2.3.1.5.1.1.1235 OTU 2 seqs prokMSA_id:50362 AJ298575.1 wall surface clone Hb7_K2 prokMSA_id:69907 AJ298576.1 masonry discolouration clone Hb7-K1 2.3.1.5.1.1.1248 OTU 4 seqs prokMSA_id:11352 X87134.1 Rubrobacter radiotolerans prokMSA_id:11353 U65647.1 Rubrobacter radiotolerans prokMSA_id:11354 AJ243870.1 Rubrobacter radiotolerans str. RALC-4 prokMSA_id:11355 X98372.1 Rubrobacter radiotolerans str. DSM 5868 2.3.1.5.1.1.1257 OTU 1 seq prokMSA_id:75252 AY154577.1 earthworm cast clone c219 2.3.1.5.1.1.1298 OTU 1 seq prokMSA_id:50933 AF170770.1 Rubrobacter sp. clone QSSC8L-10 2.3.1.5.1.1.1313 OTU 1 seq prokMSA_id:84551 AY250873.1 lichen-dominated Antarctic cryptoendolithic community clone FBP269 2.3.1.5.1.1.1322 OTU 1 seq prokMSA_id:78352 AJ535745.1 agricultural soil under organic management clone OF4 2.3.1.5.1.1.1384 OTU 1 seq prokMSA_id:75823 AY150916.1 shortgrass steppe surface soil clone WYO2C 2.3.1.5.1.1.1480 OTU 1 seq prokMSA_id:11341 X68459.1 Actinomycetales MC 4 2.3.1.5.1.1.1536 OTU 1 seq prokMSA_id:19964 AF391982.1 thermal soil clone YNPFFP59 2.3.1.5.1.1.1539 OTU 1 seq prokMSA_id:11358 X92707.1 peat bog clone TM220 2.3.1.5.1.1.1551 OTU 1 seq prokMSA_id:58144 AF498683.1 soil isolate Ellin301 2.3.1.5.1.1.1611 OTU 1 seq prokMSA_id:71641 AJ298577.1 wall surface clone Hb7-K3 2.3.1.5.1.1.1612 OTU 1 seq prokMSA_id:82554 AY250887.1 lichen-dominated Antarctic cryptoendolithic community clone FBP483 2.3.1.5.1.1.1707 OTU 1 seq prokMSA_id:76799 AY150904.1 shortgrass steppe surface soil clone WYO30C 2.3.1.5.1.1.1739 OTU 1 seq prokMSA_id:66545 AY100535.1 clone cvf70163 2.3.1.5.1.1.1762 OTU 1 seq prokMSA_id:47665 AF417897.1 antarctic soil clone bh3.17 2.3.1.5.1.1.1843 OTU 1 seq prokMSA_id:78720 AJ536866.1 uranium mining waste pile soil sample clone JG30-KF-A23 2.3.1.5.1.1.1892 OTU 1 seq prokMSA_id:32989 AF234151.1 Sturt arid-zone soil clone #0319-7H2 2.3.1.5.1.1.1901 OTU 1 seq prokMSA_id:72508 AY039806.1 earthworm burrow isolate B33D1 2.3.1.5.1.1.1919 OTU 1 seq prokMSA_id:19651 AF234065.1 Sturt arid-zone soil clone #0319-2J16 2.3.1.5.1.1.1980 OTU 1 seq prokMSA_id:70612 AF423269.1 soil clone 480-2 2.3.1.5.1.1.2060 OTU 1 seq prokMSA_id:17393 AF234137.1 Sturt arid-zone soil clone #0319-7D8 2.3.1.6 Unclassified 23 seqs 2.3.1.6.1 Unclassified 23 seqs 2.3.1.6.1.1 sf_1 21 seqs 2.3.1.6.1.1.1113 OTU 1 seq prokMSA_id:35149 AJ007641.1 25/4-10 clone 25/4-10 2.3.1.6.1.1.1118 OTU 1 seq prokMSA_id:31042 AF226237.1 maize root clone Zmrc215 2.3.1.6.1.1.1171 OTU 1 seq prokMSA_id:11633 AJ232691.1 actinobacterium clone WB013 2.3.1.6.1.1.1280 OTU 1 seq prokMSA_id:11860 AF027018.1 Actinomycete clone OPT29 2.3.1.6.1.1.1359 OTU 1 seq prokMSA_id:12687 AF013533.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.3.1.6.1.1.1367 OTU 2 seqs prokMSA_id:22795 AF337862.2 gold mine clone D7 prokMSA_id:41102 AF337882.2 gold mine clone D27 2.3.1.6.1.1.1407 OTU 2 seqs prokMSA_id:11404 AJ232681.1 actinobacterium clone WB003 prokMSA_id:11413 AJ232690.1 actinobacterium clone WB012 2.3.1.6.1.1.1441 OTU 1 seq prokMSA_id:18682 AF328202.1 clone KS65 2.3.1.6.1.1.1490 OTU 1 seq prokMSA_id:24497 AF356021.2 hydrothermal waters clone S35 2.3.1.6.1.1.1498 OTU 1 seq prokMSA_id:11417 AJ232695.1 actinobacterium clone WB017 2.3.1.6.1.1.1556 OTU 2 seqs prokMSA_id:12360 AJ241019.1 Norway:(Svalbard)Hornsund clone Sva1007 prokMSA_id:16565 AB031628.1 gram-positive clone TIHP368-02 2.3.1.6.1.1.1588 OTU 1 seq prokMSA_id:25801 AF440704.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-16 2.3.1.6.1.1.1676 OTU 2 seqs prokMSA_id:80602 AJ538048.1 agricultural soil clone CF44 prokMSA_id:83329 AJ555205.1 soil clone ACF37 2.3.1.6.1.1.1719 OTU 1 seq prokMSA_id:37000 AF328189.1 clone KS48 2.3.1.6.1.1.1848 OTU 1 seq prokMSA_id:40050 AF328226.1 clone KS95 2.3.1.6.1.1.1851 OTU 1 seq prokMSA_id:29204 AF333524.1 actinobacterium clone R106 2.3.1.6.1.1.2041 OTU 1 seq prokMSA_id:38349 AF424429.1 actinobacterium clone MERTZ_21CM_172 2.3.1.6.1.2 sf_2 2 seqs 2.3.1.6.1.2.1233 OTU 2 seqs prokMSA_id:26545 AF145825.1 Metal-contaminated soil clone K20-25 prokMSA_id:76917 AY154586.1 earthworm cast clone c229 2.3.2 BD2-10 group 9 seqs 2.3.2.1 Unclassified 9 seqs 2.3.2.1.1 Unclassified 9 seqs 2.3.2.1.1.1 sf_1 5 seqs 2.3.2.1.1.1.1309 OTU 1 seq prokMSA_id:53290 AY033296.1 marine bacterioplankton clone MB11A03 2.3.2.1.1.1.1675 OTU 3 seqs prokMSA_id:12813 AF001652.1 related to BDA1-5 (Marine Gram-positive ) Actinomycetes clone OCS155 OCS155 prokMSA_id:54456 AY033302.1 marine bacterioplankton clone MB11C06 prokMSA_id:60634 AF406542.1 bacterioplankton clone AEGEAN_193 2.3.2.1.1.1.1732 OTU 1 seq prokMSA_id:60632 AF406543.1 bacterioplankton clone AEGEAN_163 2.3.2.1.1.2 sf_2 4 seqs 2.3.2.1.1.2.1265 OTU 1 seq prokMSA_id:79332 AB099997.1 inactive deep-sea hydrothermal vent chimneys clone IndB1-23 2.3.2.1.1.2.1562 OTU 2 seqs prokMSA_id:11881 AF154093.1 hydrocarbon seep clone BPC063 prokMSA_id:11882 AB015539.1 deep-sea sediment clone BD2-10 2.3.2.1.1.2.1652 OTU 1 seq prokMSA_id:80057 AY193208.1 marine sediment clone Bol7 2.3.3 OPB41 group 6 seqs 2.3.3.1 Unclassified 6 seqs 2.3.3.1.1 Unclassified 6 seqs 2.3.3.1.1.1 sf_1 1 seq 2.3.3.1.1.1.1733 OTU 1 seq prokMSA_id:11591 AF027014.1 hot spring clone OPB41 2.3.3.1.1.2 sf_2 5 seqs 2.3.3.1.1.2.1693 OTU 3 seqs prokMSA_id:23192 AF351232.1 upgradient coal tar waste-contaminated groundwater clone 4-42 prokMSA_id:63108 AY093478.1 deep marine sediment clone MC-C2-120 prokMSA_id:63110 AY093472.1 deep marine sediment clone MB-B2-107 2.3.3.1.1.2.1702 OTU 1 seq prokMSA_id:11924 AF050572.1 contaminated aquifer clone WCHB1-81 2.3.3.1.1.2.2017 OTU 1 seq prokMSA_id:50283 AY053493.1 gas hydrate clone AT425_EubF1 2.30 NKB19 2 seqs 2.30.1 Unclassified 2 seqs 2.30.1.1 Unclassified 2 seqs 2.30.1.1.1 Unclassified 2 seqs 2.30.1.1.1.1 sf_1 2 seqs 2.30.1.1.1.1.8425 OTU 1 seq prokMSA_id:36242 AF268995.1 lab-scale sludge clone SBRH70 2.30.1.1.1.1.8990 OTU 1 seq prokMSA_id:42308 AF402973.1 hot spring clone bacteriap9 2.31 OD1 4 seqs 2.31.1 OP11-5 4 seqs 2.31.1.1 ABY1 2 seqs 2.31.1.1.1 Unclassified 2 seqs 2.31.1.1.1.1 sf_1 1 seq 2.31.1.1.1.1.4915 OTU 1 seq prokMSA_id:35504 AF316799.1 lake clone CL500-94 2.31.1.1.1.2 sf_2 1 seq 2.31.1.1.1.2.7280 OTU 1 seq prokMSA_id:6321 AB015577.1 deep-sea sediment clone BD7-1 2.31.1.2 Unclassified 2 seqs 2.31.1.2.1 Unclassified 2 seqs 2.31.1.2.1.1 sf_1 1 seq 2.31.1.2.1.1.515 OTU 1 seq prokMSA_id:65699 AF507685.1 forest soil clone S079 2.31.1.2.1.2 sf_2 1 seq 2.31.1.2.1.2.10616 OTU 1 seq prokMSA_id:10978 AB015569.1 deep-sea sediment clone BD5-13 2.32 OD2 9 seqs 2.32.1 Unclassified 9 seqs 2.32.1.1 Unclassified 9 seqs 2.32.1.1.1 Unclassified 9 seqs 2.32.1.1.1.1 sf_1 8 seqs 2.32.1.1.1.1.10424 OTU 4 seqs prokMSA_id:17620 AF367482.1 deep-sea hydrothermal vent clone VC1.2-cl02 prokMSA_id:23025 AF367488.1 deep-sea hydrothermal vent clone VC1.2-cl18 prokMSA_id:37981 AF367483.1 deep-sea hydrothermal vent clone VC1.2-cl04 prokMSA_id:42904 AF367487.1 deep-sea hydrothermal vent clone VC1.2-cl13 2.32.1.1.1.1.10455 OTU 1 seq prokMSA_id:86409 AY197400.1 Guaymas Basin hydrothermal vent sediments clone B02R018 2.32.1.1.1.1.10476 OTU 1 seq prokMSA_id:11188 AB015518.1 deep-sea sediment clone BD1-5 2.32.1.1.1.1.10531 OTU 1 seq prokMSA_id:83453 AY197399.1 Guaymas Basin hydrothermal vent sediments clone B02R017 2.32.1.1.1.1.10566 OTU 1 seq prokMSA_id:22264 AF419684.1 hydrothermal vent sediment clone CS_B020 2.32.1.1.1.2 sf_2 1 seq 2.32.1.1.1.2.10541 OTU 1 seq prokMSA_id:10984 AJ224539.1 trickling filter biofilm clone koll6 2.33 OP10 16 seqs 2.33.1 CH21 cluster 6 seqs 2.33.1.1 Unclassified 6 seqs 2.33.1.1.1 Unclassified 6 seqs 2.33.1.1.1.1 sf_1 6 seqs 2.33.1.1.1.1.308 OTU 2 seqs prokMSA_id:57713 AF418954.1 metal-rich freshwater clone HTD12 prokMSA_id:57714 AF418946.1 metal-rich freshwater clone HTB7 2.33.1.1.1.1.326 OTU 1 seq prokMSA_id:85439 AY222300.1 geothermal clone ST01-SN3H 2.33.1.1.1.1.514 OTU 2 seqs prokMSA_id:66823 AF368185.1 sludge clone SBRA309 prokMSA_id:66825 AF368184.1 sludge clone SBRA136 2.33.1.1.1.1.676 OTU 1 seq prokMSA_id:1442 X84482.2 sludge clone SBR1039 2.33.2 Unclassified 10 seqs 2.33.2.1 Unclassified 10 seqs 2.33.2.1.1 Unclassified 10 seqs 2.33.2.1.1.1 sf_1 1 seq 2.33.2.1.1.1.8413 OTU 1 seq prokMSA_id:66917 AJ306784.1 DCP-dechlorinating consortium clone SHA-37 2.33.2.1.1.2 sf_4 8 seqs 2.33.2.1.1.2.127 OTU 1 seq prokMSA_id:1431 AJ009501.1 chlorobenzene-degrading consortium clone SJA-171 2.33.2.1.1.2.148 OTU 1 seq prokMSA_id:1435 AJ009456.1 chlorobenzene-degrading consortium clone SJA-22 2.33.2.1.1.2.211 OTU 2 seqs prokMSA_id:1434 AF027089.1 hot spring clone OPB80 prokMSA_id:1436 AF027090.1 hot spring clone OPB90 2.33.2.1.1.2.484 OTU 1 seq prokMSA_id:63206 AF524022.1 forested wetland clone FW68 2.33.2.1.1.2.618 OTU 1 seq prokMSA_id:56724 AF507702.1 forest soil clone C0133 2.33.2.1.1.2.728 OTU 1 seq prokMSA_id:81869 AY214187.1 benzene-contaminated groundwater clone ZZ12AC2 2.33.2.1.1.2.989 OTU 1 seq prokMSA_id:2748 AF050575.1 contaminated aquifer clone WCHA1-79 2.33.2.1.1.3 sf_5 1 seq 2.33.2.1.1.3.9782 OTU 1 seq prokMSA_id:79712 AY192275.1 Rocky Mountain alpine soil clone S1a-1H 2.34 OP11 24 seqs 2.34.1 OP11-1 5 seqs 2.34.1.1 Unclassified 5 seqs 2.34.1.1.1 Unclassified 5 seqs 2.34.1.1.1.1 sf_1 2 seqs 2.34.1.1.1.1.214 OTU 2 seqs prokMSA_id:1310 AF027030.1 hot spring clone OPB92 prokMSA_id:28223 AF445687.1 travertine hot spring clone SM1E10 2.34.1.1.1.2 sf_2 3 seqs 2.34.1.1.1.2.1080 OTU 3 seqs prokMSA_id:1308 AF047559.1 Candidate division OP11 clone NTd42 prokMSA_id:1312 AF047561.1 Candidate division OP11 clone OPd29 prokMSA_id:40604 AF445690.1 candidate division OP11 clone SM1F02 2.34.2 OP11-2 2 seqs 2.34.2.1 Unclassified 2 seqs 2.34.2.1.1 Unclassified 2 seqs 2.34.2.1.1.1 sf_1 2 seqs 2.34.2.1.1.1.10125 OTU 1 seq prokMSA_id:18743 AF423182.1 Toluene-degrading methanogenic consortium clone Eub 2 consortium 2.34.2.1.1.1.10246 OTU 1 seq prokMSA_id:82149 AY218586.1 penguin droppings sediments clone KD2-5 2.34.3 OP11-3 3 seqs 2.34.3.1 Unclassified 3 seqs 2.34.3.1.1 Unclassified 3 seqs 2.34.3.1.1.1 sf_1 1 seq 2.34.3.1.1.1.10188 OTU 1 seq prokMSA_id:10567 AF050599.1 contaminated aquifer clone WCHB1-26 2.34.3.1.1.2 sf_2 2 seqs 2.34.3.1.1.2.10160 OTU 1 seq prokMSA_id:10555 AF050603.1 contaminated aquifer clone WCHB1-11 2.34.3.1.1.2.10170 OTU 1 seq prokMSA_id:10558 AF050605.1 contaminated aquifer clone WCHB1-56 2.34.4 OP11-6 1 seq 2.34.4.1 Unclassified 1 seq 2.34.4.1.1 Unclassified 1 seq 2.34.4.1.1.1 sf_1 1 seq 2.34.4.1.1.1.9927 OTU 1 seq prokMSA_id:10560 AF050606.1 contaminated aquifer clone WCHB1-64 2.34.5 Unclassified 13 seqs 2.34.5.1 Unclassified 13 seqs 2.34.5.1.1 Unclassified 13 seqs 2.34.5.1.1.1 sf_1 4 seqs 2.34.5.1.1.1.10169 OTU 1 seq prokMSA_id:10556 AF050604.1 contaminated aquifer clone WCHA1-09 2.34.5.1.1.1.10295 OTU 2 seqs prokMSA_id:79637 AY193286.1 contaminated aquifer clone WSA68 prokMSA_id:79984 AY193285.1 contaminated aquifer clone WSA1 2.34.5.1.1.1.9888 OTU 1 seq prokMSA_id:10559 U86604.1 Amazonian soil clone P36b 2.34.5.1.1.2 sf_2 3 seqs 2.34.5.1.1.2.10281 OTU 1 seq prokMSA_id:41471 AF276448.1 PCB-contaminated St. Lawrence River sediment clone RFLP 8E 2.34.5.1.1.2.9933 OTU 1 seq prokMSA_id:10564 AF050601.1 contaminated aquifer clone WCHA1-20 2.34.5.1.1.2.9934 OTU 1 seq prokMSA_id:10565 AF050602.1 contaminated aquifer clone WCHA1-24 2.34.5.1.1.3 sf_3 1 seq 2.34.5.1.1.3.1070 OTU 1 seq prokMSA_id:1304 AF047570.1 Candidate division OP11 clone LGd2 2.34.5.1.1.4 sf_5 1 seq 2.34.5.1.1.4.650 OTU 1 seq prokMSA_id:80475 AY192276.1 Rocky Mountain alpine soil clone W1-4H 2.34.5.1.1.5 sf_7 4 seqs 2.34.5.1.1.5.1072 OTU 1 seq prokMSA_id:1305 AF047566.1 Candidate division OP11 clone LGd6 2.34.5.1.1.5.1075 OTU 1 seq prokMSA_id:1306 AF047564.1 Candidate division OP11 clone LGd5 2.34.5.1.1.5.1076 OTU 1 seq prokMSA_id:1307 AF047567.1 Candidate division OP11 clone LGd10 2.34.5.1.1.5.5 OTU 1 seq prokMSA_id:1309 AF027026.1 Candidate division OP11 clone OPS128 2.35 OP1 11 seqs 2.35.1 Unclassified 11 seqs 2.35.1.1 Unclassified 11 seqs 2.35.1.1.1 Unclassified 11 seqs 2.35.1.1.1.1 sf_1 10 seqs 2.35.1.1.1.1.2347 OTU 7 seqs prokMSA_id:13775 AJ133616.1 brine sediment clone KTK 27 prokMSA_id:13776 AJ133619.1 brine sediment clone KTK 41 prokMSA_id:22143 AJ347771.1 brine-seawater interface clone ST-3K7 group prokMSA_id:32063 AJ347773.2 brine-seawater interface clone ST-12K21 group prokMSA_id:32158 AJ347772.1 brine-seawater interface clone ST-3K22 group prokMSA_id:40722 AJ347769.1 brine-seawater interface clone ST-12K35 group prokMSA_id:42260 AJ347770.1 brine-seawater interface clone ST-3K6 group 2.35.1.1.1.1.2403 OTU 1 seq prokMSA_id:13709 AJ133615.1 brine sediment clone KTK 14 2.35.1.1.1.1.251 OTU 1 seq prokMSA_id:34948 AJ133618.1 brine sediment clone KTK 36 2.35.1.1.1.1.499 OTU 1 seq prokMSA_id:1688 AJ133617.1 brine sediment clone KTK 32 2.35.1.1.1.2 sf_2 1 seq 2.35.1.1.1.2.826 OTU 1 seq prokMSA_id:1240 AF027045.1 hot spring clone OPB14 2.36 OP3 6 seqs 2.36.1 Unclassified 6 seqs 2.36.1.1 Unclassified 6 seqs 2.36.1.1.1 Unclassified 6 seqs 2.36.1.1.1.1 sf_1 3 seqs 2.36.1.1.1.1.1016 OTU 1 seq prokMSA_id:65679 AF507707.1 forest soil clone S042 2.36.1.1.1.1.408 OTU 1 seq prokMSA_id:1664 AB015551.1 deep-sea sediment clone BD3-9 2.36.1.1.1.1.492 OTU 1 seq prokMSA_id:1681 AJ224540.1 trickling filter biofilm clone koll11 2.36.1.1.1.2 sf_2 1 seq 2.36.1.1.1.2.349 OTU 1 seq prokMSA_id:32255 AJ390463.1 soil clone PBS-25 2.36.1.1.1.3 sf_3 1 seq 2.36.1.1.1.3.1015 OTU 1 seq prokMSA_id:17532 AY013695.1 polluted aquifer clone BVC56 2.36.1.1.1.4 sf_4 1 seq 2.36.1.1.1.4.628 OTU 1 seq prokMSA_id:49231 AY050598.1 CB-contaminated groundwater clone GOUTB15 2.37 OP5 7 seqs 2.37.1 Unclassified 7 seqs 2.37.1.1 Unclassified 7 seqs 2.37.1.1.1 Unclassified 7 seqs 2.37.1.1.1.1 sf_1 1 seq 2.37.1.1.1.1.1007 OTU 1 seq prokMSA_id:2657 AF050593.1 contaminated aquifer clone WCHB1-02 2.37.1.1.1.2 sf_2 5 seqs 2.37.1.1.1.2.461 OTU 5 seqs prokMSA_id:2659 AF027049.1 Candidate division OP5 clone OPS107 prokMSA_id:2661 AF027050.1 Candidate division OP5 clone OPB60 prokMSA_id:2663 AF027053.1 Candidate division OP5 clone OPS148 prokMSA_id:2664 AF027054.1 Candidate division OP5 clone OPS163 prokMSA_id:36070 AF255600.1 hot spring clone SRI-280 2.37.1.1.1.3 sf_3 1 seq 2.37.1.1.1.3.1056 OTU 1 seq prokMSA_id:2660 AF050594.1 contaminated aquifer clone WCHB1-03 2.38 OP8 14 seqs 2.38.1 Unclassified 14 seqs 2.38.1.1 Unclassified 14 seqs 2.38.1.1.1 Unclassified 14 seqs 2.38.1.1.1.1 sf_3 13 seqs 2.38.1.1.1.1.152 OTU 1 seq prokMSA_id:53679 AJ249097.1 DCP-dechlorinating consortium clone SHA-89 2.38.1.1.1.1.165 OTU 3 seqs prokMSA_id:1701 AB013270.1 deep sea sediment clone NKB18 prokMSA_id:19789 AF224839.1 clone Car60fc prokMSA_id:45395 AF424331.1 candidate division OP8 clone MERTZ_21CM_147 2.38.1.1.1.1.540 OTU 1 seq prokMSA_id:70747 AF419670.1 hydrothermal vent sediment clone a2b031 2.38.1.1.1.1.598 OTU 1 seq prokMSA_id:33161 AF419671.1 hydrothermal vent sediment clone a2b010 2.38.1.1.1.1.633 OTU 3 seqs prokMSA_id:1687 AF027060.1 hot spring clone OPB95 prokMSA_id:23433 AF320959.1 Lake Michigan sediment clone LMBA44 prokMSA_id:39529 AF402984.1 hot spring clone bacteriap49 2.38.1.1.1.1.69 OTU 1 seq prokMSA_id:73076 AJ306781.1 DCP-dechlorinating consortium clone SHA-124 2.38.1.1.1.1.811 OTU 2 seqs prokMSA_id:1680 AF027067.1 hot spring clone OPB5 prokMSA_id:1684 AF027068.1 hot spring clone OPB23 2.38.1.1.1.1.857 OTU 1 seq prokMSA_id:77032 AJ519671.1 uranium mill tailings soil sample clone GuBH2-AD-75 2.38.1.1.1.2 sf_4 1 seq 2.38.1.1.1.2.325 OTU 1 seq prokMSA_id:70520 AF419691.1 hydrothermal vent sediment clone C1_B017 2.39 OP9/JS1 24 seqs 2.39.1 JS1 19 seqs 2.39.1.1 Unclassified 19 seqs 2.39.1.1.1 Unclassified 19 seqs 2.39.1.1.1.1 sf_1 19 seqs 2.39.1.1.1.1.2380 OTU 1 seq prokMSA_id:83693 AY197406.1 Guaymas Basin hydrothermal vent sediments clone B03R012 2.39.1.1.1.1.2391 OTU 1 seq prokMSA_id:22245 AF323760.1 benzoate-degrading consortium clone BA021 2.39.1.1.1.1.2416 OTU 1 seq prokMSA_id:19248 AY053496.1 gas hydrate clone AT425_EubA5 2.39.1.1.1.1.2422 OTU 1 seq prokMSA_id:13719 AB015269.2 deep sea sediment clone JTB138 2.39.1.1.1.1.2435 OTU 1 seq prokMSA_id:13715 AF029043.1 benzene mineralizing consortium clone SB-15 2.39.1.1.1.1.2489 OTU 1 seq prokMSA_id:85667 AY197377.1 Guaymas Basin hydrothermal vent sediments clone B01R005 2.39.1.1.1.1.2491 OTU 11 seqs prokMSA_id:13714 AF154106.1 hydrocarbon seep clone GCA025 prokMSA_id:13716 AF029050.1 benzene mineralizing consortium clone SB-45 prokMSA_id:13720 AB015271.1 deep sea sediment clone JTB243 prokMSA_id:63112 AY093469.1 deep marine sediment clone MB-B2-103 prokMSA_id:63127 AY093459.1 deep marine sediment clone MA-A2-104 prokMSA_id:77784 AJ535219.1 marine sediment above hydrate ridge clone Hyd01-10 division prokMSA_id:86362 AY197412.1 Guaymas Basin hydrothermal vent sediments clone B04R002 prokMSA_id:96092 AY211673.1 Gulf Mexico seafloor sediment clone GoM GC234 602E prokMSA_id:96510 AY211667.1 Gulf Mexico seafloor sediment clone GoM GC234 019E prokMSA_id:102721 AY436528.1 Ocean Drilling Program Leg 190 (Nankai Trough) anaerobic marine sediment core clone prokMSA_id:112789 AY542196.1 Gulf Mexico seafloor sediments clone GoM HDB-04 2.39.1.1.1.1.2535 OTU 1 seq prokMSA_id:74279 AF419693.1 hydrothermal vent sediment clone C1_B023 2.39.1.1.1.1.2547 OTU 1 seq prokMSA_id:72683 AF419682.1 hydrothermal vent sediment clone CS_B013 2.39.2 OP9 5 seqs 2.39.2.1 Unclassified 5 seqs 2.39.2.1.1 Unclassified 5 seqs 2.39.2.1.1.1 sf_1 5 seqs 2.39.2.1.1.1.467 OTU 2 seqs prokMSA_id:1653 AF027081.1 hot spring clone OPB46 prokMSA_id:1654 AF027082.1 hot spring clone OPB47 2.39.2.1.1.1.726 OTU 1 seq prokMSA_id:1659 AF027086.1 hot spring clone OPB72 2.39.2.1.1.1.969 OTU 2 seqs prokMSA_id:66306 AJ420322.1 phylum OP9 clone SHA-110 prokMSA_id:66918 AJ306782.1 DCP-dechlorinating consortium clone SHA-1 2.4 AD3 2 seqs 2.4.1 Unclassified 2 seqs 2.4.1.1 Unclassified 2 seqs 2.4.1.1.1 Unclassified 2 seqs 2.4.1.1.1.1 sf_1 2 seqs 2.4.1.1.1.1.2338 OTU 2 seqs prokMSA_id:78943 AJ536867.1 uranium mining waste pile soil clone JG30-KF-C12 prokMSA_id:79090 AJ536865.1 uranium mining waste pile soil sample clone JG30-KF-A11 2.40 OS-K 2 seqs 2.40.1 Unclassified 2 seqs 2.40.1.1 Unclassified 2 seqs 2.40.1.1.1 Unclassified 2 seqs 2.40.1.1.1.1 sf_1 2 seqs 2.40.1.1.1.1.465 OTU 1 seq prokMSA_id:1716 AB013269.1 deep sea sediment clone NKB17 2.40.1.1.1.1.501 OTU 1 seq prokMSA_id:1724 AJ240998.1 marine sediment clone Sva0450 2.41 OS-L 3 seqs 2.41.1 Unclassified 3 seqs 2.41.1.1 Unclassified 3 seqs 2.41.1.1.1 Unclassified 3 seqs 2.41.1.1.1.1 sf_1 3 seqs 2.41.1.1.1.1.495 OTU 3 seqs prokMSA_id:46234 AF445745.1 firmicute clone SM2H09 prokMSA_id:46324 AF445720.1 firmicute clone SM2D03 prokMSA_id:46343 AF445740.1 travertine hot spring clone SM2G08 2.42 Planctomycetes 453 seqs 2.42.1 Planctomycetacia 453 seqs 2.42.1.1 Planctomycetales 435 seqs 2.42.1.1.1 Anammoxales 31 seqs 2.42.1.1.1.1 sf_1 2 seqs 2.42.1.1.1.1.1968 OTU 1 seq prokMSA_id:39505 AF314425.1 aerobic phosphorus-removal ecosystem clone PHOS-HE93 2.42.1.1.1.1.4794 OTU 1 seq prokMSA_id:33193 AJ224943.1 trickling filter biofilm clone Koll-18 2.42.1.1.1.2 sf_2 2 seqs 2.42.1.1.1.2.4683 OTU 2 seqs prokMSA_id:83520 BX294705.1 aerobic basin clone CY0ARA025F10 prokMSA_id:86383 BX294785.1 anoxic basin clone CY0ARA028B09 2.42.1.1.1.3 sf_3 1 seq 2.42.1.1.1.3.9921 OTU 1 seq prokMSA_id:10701 AF149887.1 methanogenic reactor clone EO-IV 2.42.1.1.1.4 sf_4 8 seqs 2.42.1.1.1.4.4694 OTU 1 seq prokMSA_id:40888 AF418968.1 USA: Colorado Fort collins Horsetooth Reservoir clone HT2F11 2.42.1.1.1.4.4695 OTU 2 seqs prokMSA_id:30187 AF316774.1 Crater Lake clone CL500-100 prokMSA_id:37264 AF316773.1 Crater Lake clone CL500-15 2.42.1.1.1.4.9662 OTU 5 seqs prokMSA_id:60573 AF407728.1 Great Artesian Basin clone B83 prokMSA_id:83585 BX294883.1 aerobic basin clone CY0ARA032E06 prokMSA_id:83983 BX294712.1 aerobic basin clone CY0ARA025H04 prokMSA_id:84726 BX294710.1 aerobic basin clone CY0ARA025G12 prokMSA_id:85518 BX294837.1 aerobic basin clone CY0ARA031D04 2.42.1.1.1.5 sf_5 1 seq 2.42.1.1.1.5.647 OTU 1 seq prokMSA_id:84172 BX294875.1 aerobic basin clone CY0ARA032D01 2.42.1.1.1.6 sf_6 15 seqs 2.42.1.1.1.6.23 OTU 3 seqs prokMSA_id:1683 AB015552.1 deep-sea sediment clone BD3-11 prokMSA_id:48834 AJ310389.1 marine sediment clone NS1019 prokMSA_id:87958 AY283150.1 marine sediment clone NS-61 2.42.1.1.1.6.3 OTU 12 seqs prokMSA_id:1682 AJ250882.1 trickling filter biofilm clone KOLL2a prokMSA_id:19967 AF202659.1 Anoxic biofilm clone Pla1-14 prokMSA_id:21761 AF202661.1 Anoxic biofilm clone Pla2-19 prokMSA_id:29574 AF202655.1 Anoxic biofilm clone Pla1-47 prokMSA_id:30943 AF202658.1 Anoxic biofilm clone Pla2-10 prokMSA_id:32022 AF202660.1 Anoxic biofilm clone Pla1-1 prokMSA_id:38720 AB054007.1 anoxic sludge clone KU2 prokMSA_id:40152 AF202657.1 Anoxic biofilm clone Pla1-44 prokMSA_id:40184 AF202656.1 Anoxic biofilm clone Pla1-48 prokMSA_id:45461 AF202663.1 Anoxic biofilm clone Pla2-48 prokMSA_id:48522 AF202662.1 Anoxic biofilm clone Pla2-22 prokMSA_id:53683 AF375995.1 Candidatus Kuenenia stuttgartiensis 2.42.1.1.1.7 sf_7 1 seq 2.42.1.1.1.7.5871 OTU 1 seq prokMSA_id:2639 AF173818.1 Antarctic clone LB3-13 2.42.1.1.1.8 sf_8 1 seq 2.42.1.1.1.8.97 OTU 1 seq prokMSA_id:1711 AB015586.1 deep-sea sediment clone BD7-11 2.42.1.1.2 Gemmatae 25 seqs 2.42.1.1.2.1 sf_1 25 seqs 2.42.1.1.2.1.4651 OTU 1 seq prokMSA_id:42389 AF234727.1 sludge clone A12 2.42.1.1.2.1.4665 OTU 1 seq prokMSA_id:2897 X81957.1 Gemmata sp. str. 633 2.42.1.1.2.1.4667 OTU 1 seq prokMSA_id:2899 AF121889.1 2-bromophenol-dehalogenating consortium clone 2BP-58 2.42.1.1.2.1.4690 OTU 3 seqs prokMSA_id:2892 AJ231191.1 Gemmata obscuriglobus prokMSA_id:2893 X85248.1 Gemmata obscuriglobus str. ACM 2246 prokMSA_id:2895 X56305.1 Gemmata obscuriglobus 2.42.1.1.2.1.4698 OTU 2 seqs prokMSA_id:83039 BX294744.1 anoxic basin clone CY0ARA027A08 prokMSA_id:84729 BX294781.1 anoxic basin clone CY0ARA028B03 2.42.1.1.2.1.4715 OTU 1 seq prokMSA_id:25919 AF239695.1 Australia:biggest lake University Queensland St. Lucia campus isolate str. JW10-3f1 JW10-3f1 2.42.1.1.2.1.4719 OTU 1 seq prokMSA_id:73916 AF271316.1 planctomycete clone20 clone 2.42.1.1.2.1.4721 OTU 1 seq prokMSA_id:85962 BX294692.1 aerobic basin clone CY0ARA025D03 2.42.1.1.2.1.4733 OTU 1 seq prokMSA_id:22723 AF312220.1 South Africa: KwaZulu-Natal Province Pietermaritzburg clone Y14-6 bacterium 2.42.1.1.2.1.4747 OTU 1 seq prokMSA_id:63227 AF523998.1 forested wetland clone FW101 2.42.1.1.2.1.4752 OTU 1 seq prokMSA_id:23399 AF239696.1 Australia:University Queensland St. Lucia campus fountain next to Central Library isolate str. JW11-2f5 JW11-2f5 2.42.1.1.2.1.4827 OTU 3 seqs prokMSA_id:41796 AF239697.1 Australia:biggest lake University Queensland St. Lucia campus isolate str. JW9-3f1 JW9-3f1 prokMSA_id:42240 AF239698.1 soil sample isolate str. Soil9 prokMSA_id:52302 AF239694.1 soil sample isolate str. JW3-8s0 2.42.1.1.2.1.4843 OTU 1 seq prokMSA_id:60607 AF407691.1 Great Artesian Basin clone R38 2.42.1.1.2.1.4852 OTU 1 seq prokMSA_id:22379 AF391976.1 thermal soil clone YNPFFP32 2.42.1.1.2.1.4857 OTU 1 seq prokMSA_id:45545 AF445135.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc75 2.42.1.1.2.1.4866 OTU 1 seq prokMSA_id:17920 AF465657.1 planctomycete clone YNPRH54A 2.42.1.1.2.1.4906 OTU 1 seq prokMSA_id:83360 BX294799.1 anoxic basin clone CY0ARA028E08 2.42.1.1.2.1.4910 OTU 1 seq prokMSA_id:75955 AY168744.1 arsenite-oxidizing biofilm clone HC-35 2.42.1.1.2.1.4925 OTU 1 seq prokMSA_id:22404 AF239693.1 Australia:biggest lake University Queensland St. Lucia campus isolate str. CJuql4 CJuql4 2.42.1.1.2.1.4959 OTU 1 seq prokMSA_id:2887 X64376.1 (soil MC98) clone MC98 2.42.1.1.3 Isosphaerae 18 seqs 2.42.1.1.3.1 sf_1 18 seqs 2.42.1.1.3.1.4749 OTU 1 seq prokMSA_id:63228 AF523999.1 forested wetland clone FW26 2.42.1.1.3.1.4750 OTU 1 seq prokMSA_id:20269 AF244748.1 Nostocoida limicola III str. Ben220 2.42.1.1.3.1.4824 OTU 2 seqs prokMSA_id:2881 AJ231193.1 planctomycete isolate str. 563 prokMSA_id:31175 AF239699.1 Australia:biggest lake University Queensland St. Lucia campus isolate str. CJuql1 CJuql1 2.42.1.1.3.1.4829 OTU 2 seqs prokMSA_id:16557 AF244749.1 Nostocoida limicola III str. Ben222 prokMSA_id:51778 AF244752.1 Nostocoida limicola III 2.42.1.1.3.1.4846 OTU 1 seq prokMSA_id:53180 AF244750.1 Nostocoida limicola III str. Ben223 2.42.1.1.3.1.4854 OTU 1 seq prokMSA_id:63312 AF523905.1 forested wetland clone RCP2-37 2.42.1.1.3.1.4856 OTU 1 seq prokMSA_id:45617 AF239692.1 laboratory ampicillin solution (10mg/ml w/v) isolate str. C2-3 C2-3 2.42.1.1.3.1.4868 OTU 1 seq prokMSA_id:24367 AJ292682.1 PCB-polluted soil clone WD287 2.42.1.1.3.1.4874 OTU 1 seq prokMSA_id:46130 AF234712.1 sludge clone A19 2.42.1.1.3.1.4902 OTU 1 seq prokMSA_id:27191 AJ292683.1 PCB-polluted soil clone 2112 2.42.1.1.3.1.4928 OTU 1 seq prokMSA_id:33768 AF244751.1 Nostocoida limicola III 2.42.1.1.3.1.4942 OTU 1 seq prokMSA_id:2877 X81959.1 Isophaera sp. str. 640 2.42.1.1.3.1.4943 OTU 1 seq prokMSA_id:2878 AJ231192.1 planctomycete isolate str. 394 2.42.1.1.3.1.4944 OTU 1 seq prokMSA_id:2879 X81958.1 Isophaera sp. str. 666 2.42.1.1.3.1.4957 OTU 1 seq prokMSA_id:2884 AJ231195.1 Isosphaera pallida 2.42.1.1.3.1.4958 OTU 1 seq prokMSA_id:2885 X81960.1 Isophaera sp. str. 657 2.42.1.1.4 Pirellulae 181 seqs 2.42.1.1.4.1 sf_3 181 seqs 2.42.1.1.4.1.4656 OTU 7 seqs prokMSA_id:32475 AJ290181.1 extracted river biofilm samples clone DSP28 prokMSA_id:44344 AJ290179.1 extracted river biofilm samples clone DSP33 prokMSA_id:82636 BX294778.1 anoxic basin clone CY0ARA028A09 prokMSA_id:82784 BX294694.1 aerobic basin clone CY0ARA025D05 prokMSA_id:83819 BX294701.1 aerobic basin clone CY0ARA025E12 prokMSA_id:84158 BX294825.1 aerobic basin clone CY0ARA031A08 prokMSA_id:85686 BX294887.1 aerobic basin clone CY0ARA032G05 2.42.1.1.4.1.4659 OTU 1 seq prokMSA_id:46904 AJ390443.1 soil clone PBS-II-13 2.42.1.1.4.1.4670 OTU 2 seqs prokMSA_id:85976 BX294897.1 anaerobic digester clone CY0ARA055B12 prokMSA_id:86334 BX294818.1 anaerobic digester clone CY0ARA029G09 2.42.1.1.4.1.4672 OTU 5 seqs prokMSA_id:83395 BX294682.1 aerobic basin clone CY0ARA025A12 prokMSA_id:84859 BX294738.1 aerobic basin clone CY0ARA026H03 prokMSA_id:85414 BX294879.1 aerobic basin clone CY0ARA032D08 prokMSA_id:86191 BX294747.1 anoxic basin clone CY0ARA027B04 prokMSA_id:86399 BX294715.1 aerobic basin clone CY0ARA025H10 2.42.1.1.4.1.4677 OTU 5 seqs prokMSA_id:82851 BX294898.1 anaerobic digester clone CY0ARA055C03 prokMSA_id:83873 BX294739.1 aerobic basin clone CY0ARA026H07 prokMSA_id:85229 BX294762.1 anoxic basin clone CY0ARA027D11 prokMSA_id:85571 BX294863.1 aerobic basin clone CY0ARA032A03 prokMSA_id:86238 BX294711.1 aerobic basin clone CY0ARA025H03 2.42.1.1.4.1.4680 OTU 4 seqs prokMSA_id:43734 AB062813.1 termite gut homogenate clone BCf2-25 prokMSA_id:77713 AB089118.2 termite gut homogenate clone Rs-E96 bacterium prokMSA_id:78054 AB089120.1 termite gut homogenate clone Rs-D54 bacterium prokMSA_id:78220 AB089117.1 termite gut homogenate clone Rs-A17 bacterium 2.42.1.1.4.1.4684 OTU 2 seqs prokMSA_id:38835 AF371925.1 phylotype OTU-6 swine intestine clone p-1088-a5 prokMSA_id:39471 AF371926.1 phylotype OTU-6 swine intestine clone p-943-s962-5 2.42.1.1.4.1.4687 OTU 2 seqs prokMSA_id:35477 AF271332.1 planctomycete clone41 clone prokMSA_id:52010 AF271336.1 planctomycete clone47 clone 2.42.1.1.4.1.4689 OTU 2 seqs prokMSA_id:2771 X81938.1 Pirellula sp. str. 1 prokMSA_id:2776 AJ231168.1 planctomycete isolate str. 608 2.42.1.1.4.1.4691 OTU 10 seqs prokMSA_id:24219 AF145806.1 Metal-contaminated soil clone K20-02 prokMSA_id:26957 AF271319.1 planctomycete clone23 clone prokMSA_id:27858 AF145835.1 Metal-contaminated soil clone K20-38 prokMSA_id:35556 AF234700.1 sludge clone A25 prokMSA_id:84577 BX294817.1 anoxic basin clone CY0ARA028H09 prokMSA_id:85090 BX294723.1 aerobic basin clone CY0ARA026C09 prokMSA_id:85948 AY242736.1 soil clone Tc130-30 prokMSA_id:86136 BX294903.1 anaerobic digester clone CY0ARA056C02 prokMSA_id:98499 AY395113.1 forest soil clone B28R prokMSA_id:103297 AJ616285.1 river biofilm clone DEL55 2.42.1.1.4.1.4692 OTU 4 seqs prokMSA_id:82939 BX294729.1 aerobic basin clone CY0ARA026F01 prokMSA_id:84399 BX294822.1 aerobic basin clone CY0ARA031A01 prokMSA_id:84674 BX294839.1 aerobic basin clone CY0ARA031D06 prokMSA_id:86221 BX294733.1 aerobic basin clone CY0ARA026G04 2.42.1.1.4.1.4693 OTU 2 seqs prokMSA_id:16536 AF424487.1 planctomycete clone MERTZ_21CM_143 prokMSA_id:59765 AY133430.1 coastal Antarctic sediment clone BB2_148 2.42.1.1.4.1.4701 OTU 1 seq prokMSA_id:48536 AJ390466.1 soil clone PBS-40 2.42.1.1.4.1.4704 OTU 2 seqs prokMSA_id:82914 BX294700.1 aerobic basin clone CY0ARA025E11 prokMSA_id:84402 BX294892.1 aerobic basin clone CY0ARA032H05 2.42.1.1.4.1.4709 OTU 1 seq prokMSA_id:86701 BX294902.1 anaerobic digester clone CY0ARA055H09 2.42.1.1.4.1.4711 OTU 1 seq prokMSA_id:66533 AY100549.1 clone cvf113042 2.42.1.1.4.1.4712 OTU 1 seq prokMSA_id:73686 AF445727.1 travertine hot spring clone SM2F01 2.42.1.1.4.1.4713 OTU 1 seq prokMSA_id:40268 AJ431347.1 Greenland:Ikka Fjord clone 2.42.1.1.4.1.4717 OTU 1 seq prokMSA_id:77930 AB089119.1 termite gut homogenate clone Rs-B01 2.42.1.1.4.1.4720 OTU 1 seq prokMSA_id:84073 BX294889.1 aerobic basin clone CY0ARA032G08 2.42.1.1.4.1.4722 OTU 1 seq prokMSA_id:20894 AJ290184.1 extracted river biofilm samples clone DSP26 2.42.1.1.4.1.4724 OTU 1 seq prokMSA_id:35748 AJ290190.1 extracted river biofilm s clone DSP48 2.42.1.1.4.1.4726 OTU 1 seq prokMSA_id:37281 AF422610.1 clone t040 2.42.1.1.4.1.4729 OTU 1 seq prokMSA_id:52599 AJ290172.1 extracted river biofilm samples clone DSP18 2.42.1.1.4.1.4732 OTU 1 seq prokMSA_id:36841 AF271326.1 planctomycete clone33 clone 2.42.1.1.4.1.4734 OTU 1 seq prokMSA_id:26219 AF424491.1 planctomycete clone MERTZ_21CM_203 2.42.1.1.4.1.4735 OTU 1 seq prokMSA_id:85995 BX294698.1 aerobic basin clone CY0ARA025E05 2.42.1.1.4.1.4736 OTU 1 seq prokMSA_id:2830 L10942.1 marine snow clone agg8 2.42.1.1.4.1.4737 OTU 1 seq prokMSA_id:37436 AF195424.1 July collection clone kpj13f 2.42.1.1.4.1.4738 OTU 1 seq prokMSA_id:44654 AJ390464.1 soil clone PBS-33 2.42.1.1.4.1.4740 OTU 1 seq prokMSA_id:82583 BX294835.1 aerobic basin clone CY0ARA031C05 2.42.1.1.4.1.4744 OTU 1 seq prokMSA_id:27673 AF234702.1 sludge clone A1 2.42.1.1.4.1.4748 OTU 1 seq prokMSA_id:2767 X81939.1 Pirellula sp. str. 140 2.42.1.1.4.1.4753 OTU 1 seq prokMSA_id:80219 AF468238.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-73 2.42.1.1.4.1.4754 OTU 1 seq prokMSA_id:28765 AJ252628.1 Agricultural soil SC-I-28 () clone SC-I-28 bacterium 2.42.1.1.4.1.4762 OTU 1 seq prokMSA_id:31565 AF328181.1 clone KS32 2.42.1.1.4.1.4767 OTU 1 seq prokMSA_id:2770 X81944.1 Pirellula sp. str. 384 2.42.1.1.4.1.4769 OTU 1 seq prokMSA_id:71342 AY114326.1 anoxic marine sediment clone LD1-PA40 2.42.1.1.4.1.4775 OTU 1 seq prokMSA_id:2777 AJ231169.1 planctomycete isolate str. 529 2.42.1.1.4.1.4778 OTU 1 seq prokMSA_id:2778 AJ231170.1 planctomycete isolate str. 610 2.42.1.1.4.1.4779 OTU 1 seq prokMSA_id:30167 AJ390484.1 derived rice roots clone PRR-47 2.42.1.1.4.1.4782 OTU 1 seq prokMSA_id:51502 AF424497.1 planctomycete clone MERTZ_21CM_287 2.42.1.1.4.1.4792 OTU 1 seq prokMSA_id:2780 AF029078.1 Pirellula complete clone 6N14 2.42.1.1.4.1.4797 OTU 1 seq prokMSA_id:2784 AJ231171.1 planctomycete isolate str. 337 2.42.1.1.4.1.4799 OTU 1 seq prokMSA_id:2785 AJ231172.1 planctomycete isolate str. 567 2.42.1.1.4.1.4801 OTU 2 seqs prokMSA_id:83238 BX294820.1 anaerobic digester clone CY0ARA030F07 prokMSA_id:83410 BX294686.1 aerobic basin clone CY0ARA025B08 2.42.1.1.4.1.4802 OTU 3 seqs prokMSA_id:84128 BX294737.1 aerobic basin clone CY0ARA026G09 prokMSA_id:85856 BX294714.1 aerobic basin clone CY0ARA025H08 prokMSA_id:86524 BX294857.1 aerobic basin clone CY0ARA031H01 2.42.1.1.4.1.4803 OTU 9 seqs prokMSA_id:2809 AJ231179.1 planctomycete isolate str. 611 prokMSA_id:2810 AJ231180.1 planctomycete isolate str. 391 prokMSA_id:2812 X86387.1 Pirellula sp. str. ACM.3180 prokMSA_id:2813 X86388.1 Pirellula sp. str. ACM 3181 prokMSA_id:2814 X86389.1 Pirellula sp. str. AGA/C41 prokMSA_id:2815 X86391.1 Pirellula sp. str. AGA/M12 prokMSA_id:2816 X86390.1 Pirellula sp. str. AGA/M41 prokMSA_id:71634 AF453519.1 Pirellula sp. str. 16 prokMSA_id:71672 AF453518.1 Pirellula sp. str. 81 2.42.1.1.4.1.4807 OTU 1 seq prokMSA_id:2787 X81941.1 Pirellula sp. str. 158 2.42.1.1.4.1.4810 OTU 1 seq prokMSA_id:2818 X81947.1 Pirellula sp. str. 678 2.42.1.1.4.1.4812 OTU 2 seqs prokMSA_id:17181 AF424496.1 planctomycete clone MERTZ_21CM_254 prokMSA_id:42468 AF424479.1 planctomycete clone MERTZ_21CM_21 2.42.1.1.4.1.4814 OTU 2 seqs prokMSA_id:2783 X81940.1 Pirellula sp. str. 516 prokMSA_id:2786 AJ231173.1 planctomycete isolate str. 543 2.42.1.1.4.1.4815 OTU 7 seqs prokMSA_id:33918 AJ290173.1 extracted river biofilm s clone DSP12 prokMSA_id:41687 AJ290174.1 extracted river biofilm s clone DSP19 prokMSA_id:43981 AJ290194.1 extracted river biofilm s clone DSP23 prokMSA_id:45321 AJ290187.1 extracted river biofilm s clone DSP17 prokMSA_id:54575 AJ290170.1 extracted river biofilm s clone DSP04 prokMSA_id:71284 AJ290189.1 extracted river biofilm s clone DSP41 prokMSA_id:91141 AY345510.1 Lake Waiau sediment clone W4A-A33 2.42.1.1.4.1.4817 OTU 3 seqs prokMSA_id:38299 AJ390475.1 derived rice roots clone PRR-1B prokMSA_id:46511 AJ390478.1 derived rice roots clone PRR-7 prokMSA_id:51628 AJ390483.1 derived rice roots clone PRR-14 2.42.1.1.4.1.4819 OTU 3 seqs prokMSA_id:2826 M34126.1 Pirellula staleyi prokMSA_id:2828 AJ231183.1 Pirellula staleyi prokMSA_id:35238 AF399914.1 Pirellula staleyi str. ATCC 35122 2.42.1.1.4.1.4825 OTU 4 seqs prokMSA_id:82615 BX294740.1 aerobic basin clone CY0ARA026H10 prokMSA_id:83889 BX294895.1 aerobic basin clone CY0ARA032H12 prokMSA_id:84243 BX294759.1 anoxic basin clone CY0ARA027D05 prokMSA_id:85523 BX294868.1 aerobic basin clone CY0ARA032B02 2.42.1.1.4.1.4828 OTU 2 seqs prokMSA_id:2833 AF029076.1 Pirellula complete clone 5H12 prokMSA_id:2834 AF029077.1 Pirellula complete clone 6O13 2.42.1.1.4.1.4833 OTU 2 seqs prokMSA_id:33540 AF145823.1 Metal-contaminated soil clone K20-20 prokMSA_id:44989 AF271334.1 planctomycete clone44 clone 2.42.1.1.4.1.4837 OTU 2 seqs prokMSA_id:18879 AF271324.1 planctomycete clone30 clone prokMSA_id:85732 AY221065.1 Mammoth cave clone CCM5b 2.42.1.1.4.1.4838 OTU 1 seq prokMSA_id:32118 AJ290188.2 extracted river biofilm s clone DSP09 2.42.1.1.4.1.4844 OTU 1 seq prokMSA_id:22503 AF424503.1 planctomycete clone MERTZ_21CM_411 2.42.1.1.4.1.4845 OTU 1 seq prokMSA_id:22360 AF424485.1 clone MERTZ_21CM_74 2.42.1.1.4.1.4847 OTU 1 seq prokMSA_id:18704 AJ290182.1 extracted river biofilm samples clone DSP25 2.42.1.1.4.1.4850 OTU 1 seq prokMSA_id:82832 BX294750.1 anoxic basin clone CY0ARA027C01 2.42.1.1.4.1.4853 OTU 1 seq prokMSA_id:70249 AF419698.1 not 0-1 cm layer core C clone 2.42.1.1.4.1.4860 OTU 1 seq prokMSA_id:22522 AF424480.1 planctomycete clone MERTZ_21CM_26 2.42.1.1.4.1.4863 OTU 1 seq prokMSA_id:33252 AJ290186.1 extracted river biofilm s clone DSP36 2.42.1.1.4.1.4869 OTU 1 seq prokMSA_id:23198 AJ390470.1 soil clone PBS-81 2.42.1.1.4.1.4876 OTU 1 seq prokMSA_id:32460 AF271330.1 planctomycete clone38 clone 2.42.1.1.4.1.4877 OTU 1 seq prokMSA_id:50882 AF234735.1 sludge clone A8 2.42.1.1.4.1.4879 OTU 1 seq prokMSA_id:30401 AF271331.1 planctomycete clone40 clone 2.42.1.1.4.1.4880 OTU 1 seq prokMSA_id:17937 AF328180.1 clone KS31 2.42.1.1.4.1.4882 OTU 1 seq prokMSA_id:66932 AJ306767.1 DCP-dechlorinating consortium clone SHA-87 2.42.1.1.4.1.4883 OTU 1 seq prokMSA_id:2800 X81943.1 Pirellula sp. str. 382 2.42.1.1.4.1.4884 OTU 1 seq prokMSA_id:2801 X81942.1 Pirellula sp. str. 302 2.42.1.1.4.1.4885 OTU 1 seq prokMSA_id:2805 AJ231177.1 planctomycete isolate str. 449 2.42.1.1.4.1.4888 OTU 1 seq prokMSA_id:2808 X62912.1 Pirellula marina 2.42.1.1.4.1.4889 OTU 1 seq prokMSA_id:25864 AJ290171.1 extracted river biofilm samples clone DSP08 2.42.1.1.4.1.4891 OTU 1 seq prokMSA_id:29003 AJ290192.1 extracted river biofilm s clone DSP56 2.42.1.1.4.1.4892 OTU 1 seq prokMSA_id:38280 AF424478.1 planctomycete clone MERTZ_0CM_394 2.42.1.1.4.1.4894 OTU 1 seq prokMSA_id:38697 AF445137.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc77 2.42.1.1.4.1.4900 OTU 1 seq prokMSA_id:83886 BX294764.1 anoxic basin clone CY0ARA027E04 2.42.1.1.4.1.4903 OTU 1 seq prokMSA_id:2811 AJ231181.1 planctomycete isolate str. 116 2.42.1.1.4.1.4911 OTU 1 seq prokMSA_id:2793 X81945.1 Pirellula sp. str. 139 2.42.1.1.4.1.4912 OTU 2 seqs prokMSA_id:85578 BX294845.1 aerobic basin clone CY0ARA031F02 prokMSA_id:113466 AY922083.1 farm soil adjacent to silage storage bunker clone AKYG983 2.42.1.1.4.1.4913 OTU 1 seq prokMSA_id:83975 BX294830.1 aerobic basin clone CY0ARA031B03 2.42.1.1.4.1.4927 OTU 1 seq prokMSA_id:2821 AJ231182.1 planctomycete isolate str. 292 2.42.1.1.4.1.4931 OTU 1 seq prokMSA_id:66934 AJ306765.1 DCP-dechlorinating consortium clone SHA-6 2.42.1.1.4.1.4937 OTU 9 seqs prokMSA_id:82778 BX294826.1 aerobic basin clone CY0ARA031A10 prokMSA_id:82890 BX294725.1 aerobic basin clone CY0ARA026D09 prokMSA_id:82921 BX294840.1 aerobic basin clone CY0ARA031D07 prokMSA_id:83117 BX294866.1 aerobic basin clone CY0ARA032A12 prokMSA_id:83962 BX294827.1 aerobic basin clone CY0ARA031A12 prokMSA_id:84337 BX294745.1 anoxic basin clone CY0ARA027A12 prokMSA_id:84860 BX294676.1 aerobic basin clone CY0ARA025A03 prokMSA_id:85305 BX294713.1 aerobic basin clone CY0ARA025H06 prokMSA_id:85841 BX294859.1 aerobic basin clone CY0ARA031H04 2.42.1.1.4.1.4939 OTU 5 seqs prokMSA_id:82963 BX294771.1 anoxic basin clone CY0ARA027G12 prokMSA_id:83701 BX294760.1 anoxic basin clone CY0ARA027D06 prokMSA_id:85058 BX294810.1 anoxic basin clone CY0ARA028G07 prokMSA_id:85268 BX294901.1 anaerobic digester clone CY0ARA055E08 prokMSA_id:86000 BX294731.1 aerobic basin clone CY0ARA026F10 2.42.1.1.4.1.4949 OTU 3 seqs prokMSA_id:83877 BX294677.1 aerobic basin clone CY0ARA025A04 prokMSA_id:84580 BX294794.1 anoxic basin clone CY0ARA028D03 prokMSA_id:86330 AY266448.1 Baltimore Harbor sediment clone B2 2.42.1.1.4.1.4953 OTU 4 seqs prokMSA_id:33376 AF234760.1 sludge clone A17 prokMSA_id:83141 BX294767.1 anoxic basin clone CY0ARA027E08 prokMSA_id:86053 BX294896.1 anaerobic digester clone CY0ARA055B04 prokMSA_id:86591 BX294707.1 aerobic basin clone CY0ARA025G04 2.42.1.1.4.1.4954 OTU 5 seqs prokMSA_id:83496 BX294815.1 anoxic basin clone CY0ARA028H06 prokMSA_id:83683 BX294876.1 aerobic basin clone CY0ARA032D03 prokMSA_id:84223 BX294819.1 anaerobic digester clone CY0ARA030B10 prokMSA_id:84748 BX294900.1 anaerobic digester clone CY0ARA055E04 prokMSA_id:84963 BX294832.1 aerobic basin clone CY0ARA031B08 2.42.1.1.4.1.4955 OTU 1 seq prokMSA_id:63229 AF523997.1 forested wetland clone FW123 2.42.1.1.4.1.4956 OTU 1 seq prokMSA_id:37686 AF314429.1 aerobic phosphorus-removal ecosystem clone PHOS-HE25 2.42.1.1.5 Planctomycetaceae 156 seqs 2.42.1.1.5.1 sf_3 153 seqs 2.42.1.1.5.1.4650 OTU 1 seq prokMSA_id:17529 X99985.1 aquatic clone 1200-34 2.42.1.1.5.1.4652 OTU 5 seqs prokMSA_id:82501 BX294727.1 aerobic basin clone CY0ARA026E07 prokMSA_id:84112 BX294804.1 anoxic basin clone CY0ARA028F06 prokMSA_id:84152 BX294852.1 aerobic basin clone CY0ARA031G02 prokMSA_id:84174 BX294789.1 anoxic basin clone CY0ARA028C04 prokMSA_id:84269 BX294741.1 anoxic basin clone CY0ARA027A01 2.42.1.1.5.1.4654 OTU 2 seqs prokMSA_id:2824 AF159642.1 related to Planctomycetales prokMSA_id:16674 AF469406.1 clone 33-FL67B99 2.42.1.1.5.1.4669 OTU 12 seqs prokMSA_id:82559 BX294904.1 anaerobic digester clone CY0ARA056D01 prokMSA_id:82605 BX294888.1 aerobic basin clone CY0ARA032G06 prokMSA_id:82795 BX294758.1 anoxic basin clone CY0ARA027D04 prokMSA_id:83232 BX294703.1 aerobic basin clone CY0ARA025F04 prokMSA_id:83671 BX294851.1 aerobic basin clone CY0ARA031G01 prokMSA_id:84018 BX294873.1 aerobic basin clone CY0ARA032C06 prokMSA_id:84250 BX294709.1 aerobic basin clone CY0ARA025G09 prokMSA_id:84554 BX294732.1 aerobic basin clone CY0ARA026G01 prokMSA_id:84863 BX294864.1 aerobic basin clone CY0ARA032A07 prokMSA_id:84917 BX294907.1 anaerobic digester clone CY0ARA056H03 prokMSA_id:84994 BX294730.1 aerobic basin clone CY0ARA026F02 prokMSA_id:86031 BX294798.1 anoxic basin clone CY0ARA028E07 2.42.1.1.5.1.4673 OTU 5 seqs prokMSA_id:82503 BX294893.1 aerobic basin clone CY0ARA032H07 prokMSA_id:82877 BX294681.1 aerobic basin clone CY0ARA025A10 prokMSA_id:83604 BX294784.1 anoxic basin clone CY0ARA028B06 prokMSA_id:85208 BX294777.1 anoxic basin clone CY0ARA028A05 prokMSA_id:86551 BX294878.1 aerobic basin clone CY0ARA032D07 2.42.1.1.5.1.4674 OTU 1 seq prokMSA_id:85582 BX294783.1 anoxic basin clone CY0ARA028B05 2.42.1.1.5.1.4675 OTU 5 seqs prokMSA_id:83075 BX294718.1 aerobic basin clone CY0ARA026A10 prokMSA_id:83442 BX294874.1 aerobic basin clone CY0ARA032C07 prokMSA_id:83894 BX294769.1 anoxic basin clone CY0ARA027G08 prokMSA_id:84640 BX294691.1 aerobic basin clone CY0ARA025C09 prokMSA_id:85753 BX294788.1 anoxic basin clone CY0ARA028C03 2.42.1.1.5.1.4676 OTU 3 seqs prokMSA_id:84069 BX294722.1 aerobic basin clone CY0ARA026C05 prokMSA_id:85037 BX294842.1 aerobic basin clone CY0ARA031E04 prokMSA_id:86466 BX294800.1 anoxic basin clone CY0ARA028E09 2.42.1.1.5.1.4679 OTU 3 seqs prokMSA_id:83654 BX294862.1 aerobic basin clone CY0ARA032A02 prokMSA_id:83996 BX294685.1 aerobic basin clone CY0ARA025B04 prokMSA_id:85441 BX294787.1 anoxic basin clone CY0ARA028B12 2.42.1.1.5.1.4682 OTU 3 seqs prokMSA_id:26236 AJ401119.1 Elbe river clone DEV057 prokMSA_id:40021 AJ401122.1 Elbe river clone DEV036 prokMSA_id:46265 AJ401120.1 Elbe river clone DEV050 2.42.1.1.5.1.4697 OTU 43 seqs prokMSA_id:36768 AF234752.1 sludge clone A24 prokMSA_id:48540 AF234749.1 sludge clone H28 prokMSA_id:82540 BX294734.1 aerobic basin clone CY0ARA026G05 prokMSA_id:82901 BX294843.1 aerobic basin clone CY0ARA031E06 prokMSA_id:82966 BX294697.1 aerobic basin clone CY0ARA025E02 prokMSA_id:83154 BX294690.1 aerobic basin clone CY0ARA025C06 prokMSA_id:83185 BX294720.1 aerobic basin clone CY0ARA026B05 prokMSA_id:83190 BX294881.1 aerobic basin clone CY0ARA032E02 prokMSA_id:83265 BX294751.1 anoxic basin clone CY0ARA027C02 prokMSA_id:83345 BX294768.1 anoxic basin clone CY0ARA027F06 prokMSA_id:83346 BX294779.1 anoxic basin clone CY0ARA028A10 prokMSA_id:83401 BX294890.1 aerobic basin clone CY0ARA032H01 prokMSA_id:83493 BX294880.1 aerobic basin clone CY0ARA032E01 prokMSA_id:83914 BX294699.1 aerobic basin clone CY0ARA025E06 prokMSA_id:83928 BX294813.1 anoxic basin clone CY0ARA028H01 prokMSA_id:84121 BX294735.1 aerobic basin clone CY0ARA026G07 prokMSA_id:84204 BX294834.1 aerobic basin clone CY0ARA031C04 prokMSA_id:84274 BX294765.1 anoxic basin clone CY0ARA027E05 prokMSA_id:84423 BX294809.1 anoxic basin clone CY0ARA028G06 prokMSA_id:84498 BX294884.1 aerobic basin clone CY0ARA032E08 prokMSA_id:84639 BX294774.1 anoxic basin clone CY0ARA027H07 prokMSA_id:84753 BX294854.1 aerobic basin clone CY0ARA031G06 prokMSA_id:84847 BX294757.1 anoxic basin clone CY0ARA027D02 prokMSA_id:85031 BX294886.1 aerobic basin clone CY0ARA032F07 prokMSA_id:85065 BX294742.1 anoxic basin clone CY0ARA027A05 prokMSA_id:85086 BX294687.1 aerobic basin clone CY0ARA025B11 prokMSA_id:85233 BX294805.1 anoxic basin clone CY0ARA028F07 prokMSA_id:85264 BX294858.1 aerobic basin clone CY0ARA031H02 prokMSA_id:85360 BX294802.1 anoxic basin clone CY0ARA028F02 prokMSA_id:85380 BX294683.1 aerobic basin clone CY0ARA025B01 prokMSA_id:85462 BX294776.1 anoxic basin clone CY0ARA028A01 prokMSA_id:85488 BX294793.1 anoxic basin clone CY0ARA028C12 prokMSA_id:85597 BX294848.1 aerobic basin clone CY0ARA031F06 prokMSA_id:85700 BX294861.1 aerobic basin clone CY0ARA031H10 prokMSA_id:85769 BX294674.1 aerobic basin clone CY0ARA025A01 prokMSA_id:85880 BX294702.1 aerobic basin clone CY0ARA025F03 prokMSA_id:85905 BX294684.1 aerobic basin clone CY0ARA025B02 prokMSA_id:85941 BX294728.1 aerobic basin clone CY0ARA026E08 prokMSA_id:86222 BX294736.1 aerobic basin clone CY0ARA026G08 prokMSA_id:86372 BX294688.1 aerobic basin clone CY0ARA025C01 prokMSA_id:86496 BX294782.1 anoxic basin clone CY0ARA028B04 prokMSA_id:86517 BX294721.1 aerobic basin clone CY0ARA026C04 prokMSA_id:86620 BX294833.1 aerobic basin clone CY0ARA031C03 2.42.1.1.5.1.4699 OTU 6 seqs prokMSA_id:84138 BX294770.1 anoxic basin clone CY0ARA027G11 prokMSA_id:85389 BX294675.1 aerobic basin clone CY0ARA025A02 prokMSA_id:85891 BX294752.1 anoxic basin clone CY0ARA027C03 prokMSA_id:85984 BX294780.1 anoxic basin clone CY0ARA028B01 prokMSA_id:86090 BX294844.1 aerobic basin clone CY0ARA031E07 prokMSA_id:86400 BX294846.1 aerobic basin clone CY0ARA031F03 2.42.1.1.5.1.4746 OTU 1 seq prokMSA_id:2837 X64383.1 (soil MC100) clone MC100 2.42.1.1.5.1.4756 OTU 1 seq prokMSA_id:34174 AJ307950.1 derived microbial 'pearl'- community clone sipK18 2.42.1.1.5.1.4757 OTU 1 seq prokMSA_id:2840 AJ231189.1 Planctomyces sp. str. 599 2.42.1.1.5.1.4759 OTU 1 seq prokMSA_id:36579 AJ290168.1 extracted river biofilm s clone DSP14 2.42.1.1.5.1.4773 OTU 3 seqs prokMSA_id:2845 X62911.1 Planctomyces limnophilus prokMSA_id:2846 AJ231187.1 Planctomyces sp. str. 287 prokMSA_id:2847 AJ231188.1 Planctomyces sp. str. 282 2.42.1.1.5.1.4774 OTU 1 seq prokMSA_id:2849 X81952.1 Planctomyces sp. str. 130 2.42.1.1.5.1.4776 OTU 1 seq prokMSA_id:43338 AF424476.1 planctomycete clone MERTZ_0CM_317 2.42.1.1.5.1.4783 OTU 1 seq prokMSA_id:52232 AF316776.1 Crater Lake clone CL500-4 2.42.1.1.5.1.4789 OTU 1 seq prokMSA_id:2851 AJ231184.1 Planctomyces maris 2.42.1.1.5.1.4791 OTU 1 seq prokMSA_id:2852 AF142784.1 clone ACE-2 2.42.1.1.5.1.4793 OTU 1 seq prokMSA_id:2853 AF029079.1 Planctomyces complete clone 7F15 2.42.1.1.5.1.4796 OTU 1 seq prokMSA_id:2856 X81956.1 Planctomyces sp. str. 668 2.42.1.1.5.1.4798 OTU 1 seq prokMSA_id:2858 AF170771.1 Planctomycetales clone QSSC8L-11 2.42.1.1.5.1.4806 OTU 1 seq prokMSA_id:2859 AJ231186.1 Planctomyces sp. str. 248 2.42.1.1.5.1.4816 OTU 2 seqs prokMSA_id:2862 X81953.1 Planctomyces sp. str. 269 prokMSA_id:2863 AJ231185.1 Planctomyces sp. str. 423 2.42.1.1.5.1.4818 OTU 4 seqs prokMSA_id:84043 BX294754.1 anoxic basin clone CY0ARA027C06 prokMSA_id:85255 BX294812.1 anoxic basin clone CY0ARA028G10 prokMSA_id:85278 BX294807.1 anoxic basin clone CY0ARA028F09 prokMSA_id:89643 AY328733.1 drinking water system simulator clone DSSD34 2.42.1.1.5.1.4821 OTU 2 seqs prokMSA_id:2838 X81951.1 Planctomyces sp. str. 638 prokMSA_id:2841 X81950.1 Planctomyces sp. str. 642 2.42.1.1.5.1.4831 OTU 3 seqs prokMSA_id:2857 AJ231190.1 Planctomyces brasiliensis prokMSA_id:2860 X85249.1 Planctomyces sp. AGA/M18 prokMSA_id:62476 AF513967.1 planctomycete clone LA4-B40N 2.42.1.1.5.1.4855 OTU 1 seq prokMSA_id:84446 BX294726.1 aerobic basin clone CY0ARA026D10 2.42.1.1.5.1.4858 OTU 1 seq prokMSA_id:29509 AJ290177.1 extracted river biofilm s clone DSP01 2.42.1.1.5.1.4862 OTU 1 seq prokMSA_id:27845 AF424482.1 planctomycete clone MERTZ_21CM_40 2.42.1.1.5.1.4870 OTU 1 seq prokMSA_id:86309 BX294719.1 aerobic basin clone CY0ARA026B03 2.42.1.1.5.1.4872 OTU 1 seq prokMSA_id:39076 AF424500.1 planctomycete clone MERTZ_21CM_342 2.42.1.1.5.1.4873 OTU 1 seq prokMSA_id:46917 AJ252614.1 Agricultural soil SC-I-11 () clone SC-I-11 bacterium 2.42.1.1.5.1.4899 OTU 1 seq prokMSA_id:2861 X81955.1 Planctomyces sp. str. 664 2.42.1.1.5.1.4933 OTU 1 seq prokMSA_id:2871 AB015527.1 deep-sea sediment clone BD1-23 2.42.1.1.5.1.4947 OTU 9 seqs prokMSA_id:82761 BX294836.1 aerobic basin clone CY0ARA031C06 prokMSA_id:83338 BX294841.1 aerobic basin clone CY0ARA031E01 prokMSA_id:84077 BX294803.1 anoxic basin clone CY0ARA028F03 prokMSA_id:84252 BX294717.1 aerobic basin clone CY0ARA026A07 prokMSA_id:85209 BX294829.1 aerobic basin clone CY0ARA031B02 prokMSA_id:85210 BX294795.1 anoxic basin clone CY0ARA028D04 prokMSA_id:85797 BX294891.1 aerobic basin clone CY0ARA032H03 prokMSA_id:85994 BX294905.1 anaerobic digester clone CY0ARA056E01 prokMSA_id:86410 BX294865.1 aerobic basin clone CY0ARA032A11 2.42.1.1.5.1.4948 OTU 5 seqs prokMSA_id:83300 BX294872.1 aerobic basin clone CY0ARA032C05 prokMSA_id:83373 BX294763.1 anoxic basin clone CY0ARA027D12 prokMSA_id:84911 BX294756.1 anoxic basin clone CY0ARA027D01 prokMSA_id:85009 BX294847.1 aerobic basin clone CY0ARA031F05 prokMSA_id:85309 BX294724.1 aerobic basin clone CY0ARA026D07 2.42.1.1.5.1.4962 OTU 8 seqs prokMSA_id:82510 BX294761.1 anoxic basin clone CY0ARA027D08 prokMSA_id:82947 BX294870.1 aerobic basin clone CY0ARA032C01 prokMSA_id:84246 BX294706.1 aerobic basin clone CY0ARA025F12 prokMSA_id:84623 BX294791.1 anoxic basin clone CY0ARA028C08 prokMSA_id:85687 BX294680.1 aerobic basin clone CY0ARA025A09 prokMSA_id:86186 BX294766.1 anoxic basin clone CY0ARA027E06 prokMSA_id:86592 BX294786.1 anoxic basin clone CY0ARA028B10 prokMSA_id:86593 BX294871.1 aerobic basin clone CY0ARA032C02 2.42.1.1.5.1.4963 OTU 5 seqs prokMSA_id:82799 BX294755.1 anoxic basin clone CY0ARA027C07 prokMSA_id:82895 BX294828.1 aerobic basin clone CY0ARA031B01 prokMSA_id:83497 BX294869.1 aerobic basin clone CY0ARA032B06 prokMSA_id:84481 BX294689.1 aerobic basin clone CY0ARA025C03 prokMSA_id:84853 BX294797.1 anoxic basin clone CY0ARA028D09 2.42.1.1.5.1.4965 OTU 2 seqs prokMSA_id:83132 BX294753.1 anoxic basin clone CY0ARA027C04 prokMSA_id:86297 BX294850.1 aerobic basin clone CY0ARA031F10 2.42.1.1.5.2 sf_4 1 seq 2.42.1.1.5.2.4859 OTU 1 seq prokMSA_id:31715 AF271341.1 planctomycete clone9 clone 2.42.1.1.5.3 sf_5 2 seqs 2.42.1.1.5.3.4780 OTU 1 seq prokMSA_id:43216 AF256042.1 Pine (Pinus merkusii) forest soil clone GT43a 2.42.1.1.5.3.4940 OTU 1 seq prokMSA_id:2875 X64384.1 (soil MC25) clone MC25 2.42.1.1.6 Unclassified 24 seqs 2.42.1.1.6.1 sf_4 12 seqs 2.42.1.1.6.1.4718 OTU 1 seq prokMSA_id:40276 AF145829.1 Metal-contaminated soil clone K20-31 2.42.1.1.6.1.4739 OTU 1 seq prokMSA_id:2831 AF159639.1 related to Planctomycetales 2.42.1.1.6.1.4761 OTU 1 seq prokMSA_id:22815 AJ297459.1 Svalbard: Hornsund clone Sva0800 2.42.1.1.6.1.4770 OTU 1 seq prokMSA_id:33379 AF271337.1 planctomycete clone49 clone 2.42.1.1.6.1.4772 OTU 1 seq prokMSA_id:2772 AF159641.1 related to Planctomycetales 2.42.1.1.6.1.4808 OTU 1 seq prokMSA_id:35201 AF271339.1 planctomycete clone6 clone 2.42.1.1.6.1.4835 OTU 2 seqs prokMSA_id:42704 AF445151.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc94 prokMSA_id:49237 AF445134.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc74 2.42.1.1.6.1.4867 OTU 1 seq prokMSA_id:52475 AF271335.1 planctomycete clone46 clone 2.42.1.1.6.1.4919 OTU 2 seqs prokMSA_id:2798 AF027057.1 hot spring clone OPB17 prokMSA_id:2799 AF027058.1 hot spring clone OPB6 2.42.1.1.6.1.4934 OTU 1 seq prokMSA_id:47745 AJ390468.1 soil clone PBS-72 2.42.1.1.6.2 sf_6 11 seqs 2.42.1.1.6.2.4649 OTU 1 seq prokMSA_id:36970 AF271328.1 planctomycete clone35 clone 2.42.1.1.6.2.4655 OTU 2 seqs prokMSA_id:17601 AF271322.1 planctomycete clone27 clone prokMSA_id:19485 AF271312.1 planctomycete clone14 clone 2.42.1.1.6.2.4661 OTU 1 seq prokMSA_id:16827 AF271310.1 planctomycete clone11 clone 2.42.1.1.6.2.4666 OTU 1 seq prokMSA_id:2898 AF013556.2 Planctomyces (distant) affiliation clone 2.42.1.1.6.2.4714 OTU 1 seq prokMSA_id:27713 AF271340.1 planctomycete clone7 clone 2.42.1.1.6.2.4785 OTU 1 seq prokMSA_id:29777 AF271323.1 planctomycete clone28 clone 2.42.1.1.6.2.4871 OTU 1 seq prokMSA_id:44900 AF271314.1 planctomycete clone18 clone 2.42.1.1.6.2.4932 OTU 1 seq prokMSA_id:41568 AF271318.1 planctomycete clone22 clone 2.42.1.1.6.2.4945 OTU 1 seq prokMSA_id:46659 AF271325.1 planctomycete clone32 clone 2.42.1.1.6.2.4961 OTU 1 seq prokMSA_id:2889 X64375.1 (soil MC113) clone MC113 2.42.1.1.6.3 sf_7 1 seq 2.42.1.1.6.3.4849 OTU 1 seq prokMSA_id:85303 BX294885.1 aerobic basin clone CY0ARA032F01 2.42.1.2 Unclassified 3 seqs 2.42.1.2.1 Unclassified 3 seqs 2.42.1.2.1.1 sf_1 3 seqs 2.42.1.2.1.1.4671 OTU 3 seqs prokMSA_id:84179 BX294824.1 aerobic basin clone CY0ARA031A06 prokMSA_id:85932 BX294855.1 aerobic basin clone CY0ARA031G07 prokMSA_id:86263 BX294882.1 aerobic basin clone CY0ARA032E05 2.42.1.3 WPS-1 15 seqs 2.42.1.3.1 Unclassified 15 seqs 2.42.1.3.1.1 sf_1 6 seqs 2.42.1.3.1.1.4657 OTU 2 seqs prokMSA_id:75344 AJ534692.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN17 bacterium prokMSA_id:75622 AJ534691.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN16 bacterium 2.42.1.3.1.1.4895 OTU 1 seq prokMSA_id:63101 AY093482.1 deep marine sediment clone MB-C2-147 2.42.1.3.1.1.4897 OTU 1 seq prokMSA_id:63103 AY093476.1 deep marine sediment clone MB-C2-105 2.42.1.3.1.1.4916 OTU 1 seq prokMSA_id:2794 U81656.2 anaerobic digestor clone vadinBA30 2.42.1.3.1.1.4930 OTU 1 seq prokMSA_id:66933 AJ306766.1 DCP-dechlorinating consortium clone SHA-43 2.42.1.3.1.2 sf_2 4 seqs 2.42.1.3.1.2.4742 OTU 1 seq prokMSA_id:35667 AF423302.1 soil clone 96-2 2.42.1.3.1.2.4745 OTU 1 seq prokMSA_id:65683 AF507705.1 forest soil clone S165 2.42.1.3.1.2.4922 OTU 1 seq prokMSA_id:44216 AJ292685.1 PCB-polluted soil clone WD283 2.42.1.3.1.2.9551 OTU 1 seq prokMSA_id:55354 AF507704.1 forest soil clone C167 2.42.1.3.1.3 sf_3 3 seqs 2.42.1.3.1.3.10056 OTU 1 seq prokMSA_id:64245 AF515635.1 planctomycete clone LA4-B37N 2.42.1.3.1.3.4784 OTU 1 seq prokMSA_id:44762 AF445715.1 Planctomycetales clone SM2B12 2.42.1.3.1.3.4786 OTU 1 seq prokMSA_id:62477 AF513966.1 planctomycete clone LA4-B39N 2.42.1.3.1.4 sf_4 2 seqs 2.42.1.3.1.4.4809 OTU 1 seq prokMSA_id:42098 AF445645.1 Planctomycetales clone SM1A02 2.42.1.3.1.4.4941 OTU 1 seq prokMSA_id:60597 AF407701.1 Great Artesian Basin clone G18 2.43 Proteobacteria 12707 seqs 2.43.1 Alphaproteobacteria 3589 seqs 2.43.1.1 Acetobacterales 223 seqs 2.43.1.1.1 Acetobacteraceae 190 seqs 2.43.1.1.1.1 sf_1 190 seqs 2.43.1.1.1.1.6637 OTU 23 seqs prokMSA_id:4452 D30768.1 Acetobacter aceti prokMSA_id:4453 AF127399.1 Acetobacter aceti SRI1321 prokMSA_id:4469 X74066.1 Acetobacter europaeus prokMSA_id:18427 AB032353.1 Acetobacter indonesiensis str. LMG 1571 prokMSA_id:22182 AB032349.1 Acetobacter estunensis prokMSA_id:25708 AB052715.1 Acetobacter indonesiensis str. 1B-M19D prokMSA_id:25818 AB052706.1 Acetobacter orientalis str. 21F-2 prokMSA_id:27422 AB052716.1 Acetobacter tropicalis str. Y-1BM prokMSA_id:29322 AB052710.1 Acetobacter cibinongensis str. 4H-1 prokMSA_id:34202 AB032354.1 Acetobacter tropicalis str. NRIC 0312 No.3 prokMSA_id:34622 AB032355.1 Acetobacter tropicalis prokMSA_id:39658 AB052709.1 Acetobacter orientalis str. 1B-M18A prokMSA_id:41554 AB052711.1 Acetobacter cibinongensis str. 1BM-18C prokMSA_id:46239 AB032356.1 Acetobacter indonesiensis prokMSA_id:51781 AB032350.1 Acetobacter orleanensis prokMSA_id:56023 AJ419844.1 Acetobacter malorum str. LMG 1746 prokMSA_id:58362 AJ419845.1 Acetobacter orleanensis str. LMG 1583 prokMSA_id:58364 AJ419842.1 Acetobacter tropicalis str. LMG 1663 prokMSA_id:58368 AJ419843.1 Acetobacter cerevisiae str. LMG 1625 prokMSA_id:58369 AJ419841.1 Acetobacter indonesiensis str. LMG 1588 prokMSA_id:58371 AJ419840.1 Acetobacter aceti str. LMG 1531 prokMSA_id:58372 AJ419839.1 Acetobacter estunensis str. LMG 1572 prokMSA_id:58373 AJ419838.1 Acetobacter estunensis str. LMG 1626 2.43.1.1.1.1.6662 OTU 6 seqs prokMSA_id:4419 Y14694.1 Gluconacetobacter intermedius prokMSA_id:4454 Z21936.1 Gluconacetobacter europaeus prokMSA_id:4455 Y15289.1 Gluconacetobacter europaeus str. JK2 prokMSA_id:4465 AJ007698.1 Gluconacetobacter xylinus prokMSA_id:4466 AF062475.1 Acetobacter sp. str. ITDI2.1 prokMSA_id:56605 AJ316550.1 Gluconacetobacter intermedius str. LMD 29.8 LMG 1689 2.43.1.1.1.1.6779 OTU 2 seqs prokMSA_id:4474 D30774.1 Acidocella facilis prokMSA_id:45483 D86510.1 Acidocella sp. str. St1-2 2.43.1.1.1.1.6795 OTU 2 seqs prokMSA_id:22545 AF253413.1 Acidocella sp. str. LGS-3 prokMSA_id:50531 AF253412.1 Acidocella sp. str. WJB-3 2.43.1.1.1.1.6832 OTU 1 seq prokMSA_id:63335 AF523877.1 forested wetland clone RCP2-88 2.43.1.1.1.1.6834 OTU 1 seq prokMSA_id:63336 AF523875.1 forested wetland clone RCP2-10 2.43.1.1.1.1.6841 OTU 1 seq prokMSA_id:4410 D86513.1 Rhodopila globiformis 2.43.1.1.1.1.6852 OTU 1 seq prokMSA_id:4412 AF026978.1 clone OPT5 2.43.1.1.1.1.6868 OTU 1 seq prokMSA_id:4457 AB024492.1 Gluconobacter cerinus str. IFO 3275 2.43.1.1.1.1.6872 OTU 1 seq prokMSA_id:4417 D86512.1 Acidisphaera rubrifaciens 2.43.1.1.1.1.6875 OTU 6 seqs prokMSA_id:4426 D30770.1 Acidomonas methanolica prokMSA_id:4470 X77468.1 Acidomonas methanolicus prokMSA_id:4471 AF127398.1 Acidomonas methanolica SRI1214 prokMSA_id:26550 AB035416.1 Asaia siamensis prokMSA_id:43009 AF459455.1 Swaminathania salitolerans str. PA 12 prokMSA_id:52420 AB025928.1 Asaia bogorensis 2.43.1.1.1.1.6934 OTU 1 seq prokMSA_id:4475 AF082659.1 d acidic soil optimum growth at pH 3 isolate str. SRS1 2.43.1.1.1.1.6950 OTU 1 seq prokMSA_id:4479 D86511.1 Acidiphilium acidophilum 2.43.1.1.1.1.7027 OTU 1 seq prokMSA_id:70861 AF531477.1 Acidocella sp. str. IS10 2.43.1.1.1.1.7057 OTU 2 seqs prokMSA_id:4491 D30771.1 Acidocella aminolytica prokMSA_id:4492 X91797.1 Acidocella sp. GS19h 2.43.1.1.1.1.7065 OTU 1 seq prokMSA_id:44239 AJ292611.1 PCB-polluted soil clone WD2108 2.43.1.1.1.1.7066 OTU 1 seq prokMSA_id:39575 AF376021.1 Acidocella sp. str. NO-12 2.43.1.1.1.1.7080 OTU 1 seq prokMSA_id:32874 AJ292606.1 PCB-polluted soil clone WD295 2.43.1.1.1.1.7086 OTU 2 seqs prokMSA_id:58321 AY140238.1 Gram-negative heterotrophic acidophile isolate str. Y008 acidophile prokMSA_id:63334 AF523876.1 forested wetland clone RCP2-8 2.43.1.1.1.1.7089 OTU 1 seq prokMSA_id:4497 D30769.1 Acidiphilium sp. strain C1 2.43.1.1.1.1.7092 OTU 16 seqs prokMSA_id:4476 X75265.1 Acidiphilium cryptum B-Het4 prokMSA_id:4477 D30775.1 Acidiphilium organovorum prokMSA_id:4490 X86771.1 acid mine drainage clone OS6 prokMSA_id:4493 AB006711.1 Acidiphilium multivorum AIU301 prokMSA_id:4495 AB006712.1 Acidiphilum multivorum AIU303 prokMSA_id:4496 AB023643.1 Acidiphilium sp. str. MBIC4287 p3AMI3 prokMSA_id:4502 D30773.1 Acidiphilium cryptum prokMSA_id:4503 Y18446.1 Acidiphilium cryptum str. Kuesel IFV prokMSA_id:4505 X91796.1 Acidiphilium sp. GS18h prokMSA_id:28295 AF376023.1 Acidiphilium sp. str. NO-14 prokMSA_id:47077 AY040740.1 Acidiphilium sp. str. SJH prokMSA_id:63337 AF523874.1 forested wetland clone RCP1-78 prokMSA_id:66871 AY096140.1 hydrogen sulfide biofilter operating 20 days clone M2-70 prokMSA_id:72048 AF352794.1 Acidiphilium sp. str. MPH3 prokMSA_id:100194 AY029220.1 hydrothermal waters isolate str. NZ6 prokMSA_id:108647 AY765995.1 Acidiphilium sp. PK46 2.43.1.1.1.1.7115 OTU 5 seqs prokMSA_id:4420 AB016865.1 Acetobacter sp prokMSA_id:4423 X75620.1 Gluconacetobacter hansenii prokMSA_id:4424 AF127403.1 Gluconacetobacter-like organism IFR101 prokMSA_id:21095 AJ251110.1 Gluconacetobacter entanii prokMSA_id:73040 AJ012466.2 Acetobacter sp. str. LMG 1582 2.43.1.1.1.1.7150 OTU 12 seqs prokMSA_id:4429 X75617.1 Gluconacetobacter liquefaciens prokMSA_id:4430 AF127413.1 Gluconacetobacter sacchari IF9645 prokMSA_id:4431 AF127412.1 Gluconacetobacter sacchari IF2-6 prokMSA_id:4432 AF127411.1 Gluconacetobacter sacchari IF9701 prokMSA_id:4433 AF127410.1 Gluconacetobacter sacchari SRI1953 prokMSA_id:4435 AF127408.1 Gluconacetobacter sacchari SRI1853 prokMSA_id:4436 AF127407.1 Gluconacetobacter sacchari SRI1794 prokMSA_id:4437 AF127406.1 Gluconacetobacter sacchari SRI1216 prokMSA_id:4438 AF127405.1 Gluconacetobacter sacchari SRI1230 prokMSA_id:4439 AF127404.1 Gluconacetobacter sacchari SRI1951 prokMSA_id:4441 AF127395.1 Gluconacetobacter liquefaciens SRI1994 prokMSA_id:4443 AF127393.1 Gluconacetobacter liquefaciens SRI1957 2.43.1.1.1.1.7284 OTU 1 seq prokMSA_id:86451 AY230812.1 Gluconacetobacter diazotrophicus 2.43.1.1.1.1.7361 OTU 1 seq prokMSA_id:41076 AF391980.1 thermal soil clone YNPFFP86 2.43.1.1.1.1.7388 OTU 1 seq prokMSA_id:78172 AB089098.2 termite gut homogenate clone Rs-H51 proteobacterium 2.43.1.1.1.1.7408 OTU 1 seq prokMSA_id:33392 AF376024.1 Acidisphaera sp. str. NO-15 2.43.1.1.1.1.7414 OTU 2 seqs prokMSA_id:4442 AF127394.1 Acetobacter sp. SRI1939 prokMSA_id:100940 AY225460.1 Acetobacteraceae SASB-15 2.43.1.1.1.1.7426 OTU 1 seq prokMSA_id:17264 AF232921.1 United Kingdom: Montserrat geothermal springs clone MS5 2.43.1.1.1.1.7427 OTU 1 seq prokMSA_id:4446 Y07583.1 soil clone DA007 2.43.1.1.1.1.7430 OTU 1 seq prokMSA_id:4448 AJ001427.1 aquatic clone 400-149 2.43.1.1.1.1.7439 OTU 1 seq prokMSA_id:4440 AF127400.1 Gluconacetobacter-like organism SRI1941 2.43.1.1.1.1.7452 OTU 1 seq prokMSA_id:4407 X68472.1 MC 74 2.43.1.1.1.1.7456 OTU 1 seq prokMSA_id:82490 AY230815.1 Gluconacetobacter diazotrophicus 2.43.1.1.1.1.7459 OTU 5 seqs prokMSA_id:4462 AF127392.1 Gluconacetobacter diazotrophicus SRI1990 prokMSA_id:83463 AY230809.1 Gluconacetobacter diazotrophicus prokMSA_id:83645 AY230813.1 Gluconacetobacter diazotrophicus prokMSA_id:85095 AY230808.1 Gluconacetobacter diazotrophicus prokMSA_id:85491 AY230810.1 Gluconacetobacter diazotrophicus 2.43.1.1.1.1.7472 OTU 3 seqs prokMSA_id:4427 X73820.1 Gluconobacter oxydans prokMSA_id:4428 AF127396.1 Gluconobacter oxydans SRI1995 prokMSA_id:82086 AY206688.1 Gluconobacter oxydans str. 39PCAac1 2.43.1.1.1.1.7529 OTU 10 seqs prokMSA_id:4425 AF062474.1 Acetobacter sp. str. PA2.2 prokMSA_id:4450 AJ012697.1 Gluconacetobacter intermedius str. ZIM B025 JKD prokMSA_id:4451 AJ012699.1 Gluconacetobacter intermedius str. ZIM B025JK3 prokMSA_id:4467 AJ012698.1 Gluconacetobacter europaeus str. ZIM B028 V3 prokMSA_id:36976 AF192761.1 Gluconacetobacter azotocaptans str. CFN-Ca54 prokMSA_id:67745 AB056321.1 Kozakia baliensis str. Yo-3 prokMSA_id:67747 AB056319.1 Kozakia baliensis str. Wa-5 prokMSA_id:67750 AB056318.1 Kozakia baliensis str. Ri-1 prokMSA_id:82919 AY230814.1 Gluconacetobacter diazotrophicus prokMSA_id:85459 AY230816.1 Gluconacetobacter diazotrophicus 2.43.1.1.1.1.7565 OTU 1 seq prokMSA_id:21346 AF445136.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc76 2.43.1.1.1.1.7600 OTU 68 seqs prokMSA_id:4418 X71863.1 Acetobacter pasteurianus prokMSA_id:4421 AJ001632.1 Acetobacter pomorum prokMSA_id:4456 X80775.2 Gluconobacter cerinus prokMSA_id:4464 X82290.1 Gluconobacter frateurii prokMSA_id:4472 X80165.3 Gluconobacter asaii prokMSA_id:17998 AF459454.1 Swaminathania salitolerans str. PA 51 prokMSA_id:23292 AF111841.1 Gluconacetobacter johannae str. CFN-Cf55 prokMSA_id:27254 AB025932.1 Asaia sp. str. 85 prokMSA_id:28635 AB063287.1 Gluconobacter cerinus str. IFO 3276 prokMSA_id:30702 AB063288.1 Gluconobacter cerinus str. IAM 1832 prokMSA_id:35660 AB025929.1 Asaia bogorensis str. 86 prokMSA_id:41257 AB032352.1 Acetobacter peroxydans str. IFO 13755 prokMSA_id:43353 AB063286.1 Gluconobacter cerinus str. IFO 3267 prokMSA_id:47931 AB025931.1 Asaia bogorensis str. 90 prokMSA_id:58365 AJ419836.1 Acetobacter peroxydans str. LMG 1633 prokMSA_id:58366 AJ419835.1 Acetobacter pomorum str. LMG 18848 prokMSA_id:58367 AJ419834.1 Acetobacter pasteurianus str. LMG 1629 prokMSA_id:65495 AB086016.1 Acetobacter pasteurianus str. NCI 1193 prokMSA_id:87151 AB110713.3 Acidomonas methanolica str. TS0143 prokMSA_id:87268 AB110710.3 Acidomonas methanolica str. TS0128 prokMSA_id:87327 AB110714.3 Acidomonas methanolica str. TS0145 prokMSA_id:87360 AB110707.3 Acidomonas methanolica str. TS0114 prokMSA_id:87384 AB110708.3 Acidomonas methanolica str. TS0117 prokMSA_id:87399 AB110712.3 Acidomonas methanolica str. TS0135 prokMSA_id:87445 AB110704.3 Acidomonas methanolica str. LMG1669 prokMSA_id:87481 AB110715.3 Acidomonas methanolica str. TS0156 prokMSA_id:87580 AB110705.3 Acidomonas methanolica str. LMG1735 prokMSA_id:87641 AB110711.3 Acidomonas methanolica str. TS0131 prokMSA_id:87665 AB110709.3 Acidomonas methanolica str. TS0121 prokMSA_id:87740 AB110702.3 Acidomonas methanolica str. NRIC0498 prokMSA_id:87858 AB110703.3 Acidomonas methanolica str. LMG1667 prokMSA_id:87902 AB110706.3 Acidomonas methanolica str. TS0101 prokMSA_id:95258 AB102955.1 Asaia krungthepensis str. AA06 prokMSA_id:96639 AB102954.1 Asaia krungthepensis str. AA09 prokMSA_id:97066 AB102953.1 Asaia krungthepensis str. AA08 prokMSA_id:107781 AB128050.1 Gluconobacter thailandicus str. F149-1 prokMSA_id:108160 AB178388.1 Gluconobacter oxydans str. NBRC 3172 prokMSA_id:108162 AB178387.1 Gluconobacter oxydans str. NBRC 3171 prokMSA_id:108167 AB178393.1 Gluconobacter oxydans str. NBRC 3251 prokMSA_id:108168 AB178394.1 Gluconobacter oxydans str. NBRC 3253 prokMSA_id:108169 AB178395.1 Gluconobacter frateurii str. NBRC 3254 prokMSA_id:108170 AB178396.1 Gluconobacter oxydans str. NBRC 3255 prokMSA_id:108171 AB178397.1 Gluconobacter oxydans str. NBRC 3256 prokMSA_id:108172 AB178398.1 Gluconobacter oxydans str. NBRC 3257 prokMSA_id:108173 AB178399.1 Gluconobacter oxydans str. NBRC 3258 prokMSA_id:108174 AB178400.1 Gluconobacter frateurii str. NBRC 3260 prokMSA_id:108175 AB178401.1 Gluconobacter cerinus str. NBRC 3262 prokMSA_id:108176 AB178402.1 Gluconobacter cerinus str. NBRC 3263 prokMSA_id:108177 AB178403.1 Gluconobacter frateurii str. NBRC 3264 prokMSA_id:108178 AB178404.1 Gluconobacter frateurii str. NBRC 3265 prokMSA_id:108180 AB178407.1 Gluconobacter frateurii str. NBRC 3268 prokMSA_id:108181 AB178406.1 Gluconobacter cerinus str. NBRC 3267 prokMSA_id:108182 AB178408.1 Gluconobacter cerinus str. NBRC 3269 prokMSA_id:108183 AB178409.1 Gluconobacter frateurii str. NBRC 3270 prokMSA_id:108185 AB178410.1 Gluconobacter frateurii str. NBRC 3271 prokMSA_id:108187 AB178411.1 Gluconobacter frateurii str. NBRC 3272 prokMSA_id:108188 AB178413.1 Gluconobacter frateurii str. NBRC 3274 prokMSA_id:108189 AB178414.1 Gluconobacter cerinus str. NBRC 3275 prokMSA_id:108190 AB178415.1 Gluconobacter cerinus str. NBRC 3276 prokMSA_id:108191 AB178417.1 Gluconobacter frateurii str. NBRC 3286 prokMSA_id:108192 AB178416.1 Gluconobacter oxydans str. NBRC 3285 prokMSA_id:108195 AB178419.1 Gluconobacter oxydans str. NBRC 3289 prokMSA_id:108197 AB178420.1 Gluconobacter oxydans str. NBRC 3290 prokMSA_id:108199 AB178421.1 Gluconobacter oxydans str. NBRC 3291 prokMSA_id:108208 AB178431.1 Gluconobacter oxydans str. NBRC 12467 prokMSA_id:108211 AB178434.1 Gluconobacter frateurii str. NBRC 16669 prokMSA_id:109865 AY883035.1 Acetobacter pasteurianus \CWBI\B-419\(D12) prokMSA_id:112277 AY234551.1 soil isolate Ellin5134 2.43.1.1.1.1.7619 OTU 1 seq prokMSA_id:46484 AB032351.1 Acetobacter lovaniensis 2.43.1.1.1.1.7623 OTU 1 seq prokMSA_id:53994 AJ292597.1 PCB-polluted soil clone WD238 2.43.1.1.2 Roseococcaceae 27 seqs 2.43.1.1.2.1 sf_1 27 seqs 2.43.1.1.2.1.6708 OTU 2 seqs prokMSA_id:39419 AF408324.1 Acetobacteraceae clone KL-2-4-8 prokMSA_id:77305 AY167826.1 Roseomonas sp. str. SAFR-014 2.43.1.1.2.1.6783 OTU 2 seqs prokMSA_id:60465 AF533355.1 Roseomonas genomospecies 4 isolate str. ATCC 49959 4 prokMSA_id:75114 AY150048.1 Roseomonas genomospecies 4 strain isolate str. ATCC 49959 4 2.43.1.1.2.1.6853 OTU 1 seq prokMSA_id:4413 AF170742.1 Paracraurococcus sp. str. QSSC5-3 2.43.1.1.2.1.6856 OTU 1 seq prokMSA_id:4415 D85828.1 Craurococcus roseus 2.43.1.1.2.1.7106 OTU 15 seqs prokMSA_id:24986 AF227855.2 environmental isolate 96446 prokMSA_id:26143 AF227831.1 environmental isolate 47076 prokMSA_id:55243 AJ488505.1 Muricoccus roseus str. 173-96 prokMSA_id:59735 AF538712.1 Roseomonas mucosa str. MDA5527; ATCC BAA-692 prokMSA_id:60463 AF533357.1 Roseomonas sp. str. NML94-0193 prokMSA_id:60464 AF533359.1 Roseomonas sp. str. NML97-0121 prokMSA_id:60474 AF533352.1 Roseomonas gilardii str. ATCC 49956 prokMSA_id:60996 AF531769.1 Candidatus Roseomonas massiliae isolate str. 1461A massiliae prokMSA_id:70407 AF533360.1 Roseomonas sp. str. NML98-0157 prokMSA_id:74557 AF533358.1 Roseomonas sp. str. NML98-0009 prokMSA_id:75079 AY150051.1 Roseomonas gilardii str. E9464 prokMSA_id:75313 AY150045.1 Roseomonas gilardii str. ATCC 49956 prokMSA_id:83064 AY219712.2 Roseomonas sp. BON 1 str. BON1 prokMSA_id:85056 AY220740.1 Roseomonas gilardii subsp. rosea str. MDA5605; ATCC BAA-691 subsp. prokMSA_id:92249 AY360348.1 Roseomonas sp. str. 040703/248107A 2.43.1.1.2.1.7230 OTU 1 seq prokMSA_id:42326 AJ315073.1 Spain:Carmona clone 2.43.1.1.2.1.7320 OTU 1 seq prokMSA_id:42768 AJ290043.1 Austria: Lake Gossenkoellesee clone GKS2-218 GKS2-218 2.43.1.1.2.1.7417 OTU 1 seq prokMSA_id:4445 AF050533.1 contaminated aquifer clone WCHB1-87 2.43.1.1.2.1.7448 OTU 1 seq prokMSA_id:4404 AF173825.1 Antarctic clone LB3-94 2.43.1.1.2.1.7500 OTU 2 seqs prokMSA_id:60580 AF407720.1 Great Artesian Basin clone B35 prokMSA_id:60590 AF407709.1 Great Artesian Basin clone G62 2.43.1.1.3 Unclassified 6 seqs 2.43.1.1.3.1 sf_1 6 seqs 2.43.1.1.3.1.6961 OTU 1 seq prokMSA_id:4523 AJ001426.1 aquatic clone 400-148 2.43.1.1.3.1.6997 OTU 1 seq prokMSA_id:25464 AF150710.1 Elbe River snow isolate Iso40 Iso40_1003 2.43.1.1.3.1.7028 OTU 1 seq prokMSA_id:55487 AF523951.1 forested wetland clone FW51 2.43.1.1.3.1.7294 OTU 1 seq prokMSA_id:19497 AF422617.1 clone t047 2.43.1.1.3.1.7387 OTU 1 seq prokMSA_id:28753 AF188166.1 directly Pfiesteria piscicida clone KEppib19 2.43.1.1.3.1.7475 OTU 1 seq prokMSA_id:4548 AF013558.2 affiliation clone 2.43.1.10 Magnetococci 7 seqs 2.43.1.10.1 Unclassified 7 seqs 2.43.1.10.1.1 sf_1 7 seqs 2.43.1.10.1.1.575 OTU 3 seqs prokMSA_id:11279 Y13207.1 Magnetic strain clone rj520 prokMSA_id:11281 Y13210.1 Magnetic strain clone rj517 prokMSA_id:11282 Y13211.1 Magnetic strain clone rj58 2.43.1.10.1.1.889 OTU 1 seq prokMSA_id:11266 Y13208.1 Magnetic strain clone rj53 2.43.1.10.1.1.891 OTU 1 seq prokMSA_id:11269 X61605.1 magnetic coccus MP17 str. CS103 2.43.1.10.1.1.928 OTU 1 seq prokMSA_id:11270 X81182.1 Proteobacterium sp. 2.43.1.10.1.1.934 OTU 1 seq prokMSA_id:11272 Y13214.1 magnetic coccus MP17 str. pa119 2.43.1.11 Rhizobiales 709 seqs 2.43.1.11.1 Bartonellaceae 47 seqs 2.43.1.11.1.1 sf_1 47 seqs 2.43.1.11.1.1.7056 OTU 5 seqs prokMSA_id:16730 AF291746.1 Bartonella sp. str. 99-BO1 prokMSA_id:25998 AJ278187.1 Bartonella schoenbuchensis str. R1 prokMSA_id:27653 AF293391.1 Bartonella bovis str. 91-4 prokMSA_id:42409 AF199502.1 Bartonella weissi str. FC7049UT prokMSA_id:43831 AF373845.1 Bartonella sp. str. Deer 159/660/1 2.43.1.11.1.1.7384 OTU 1 seq prokMSA_id:5492 U87831.1 aortic heart valve patient with endocarditis clone v9 2.43.1.11.1.1.7415 OTU 6 seqs prokMSA_id:5467 M11927.1 Bartonella quintana prokMSA_id:5479 U28268.1 Bartonella quintana prokMSA_id:5495 M73228.1 Bartonella quintana prokMSA_id:52696 AJ250247.1 Bartonella quintana prokMSA_id:105705 BX897700.1 Bartonella quintana str. Toulouse prokMSA_id:107955 NC_005955.1 Bartonella quintana str. Toulouse 2.43.1.11.1.1.7634 OTU 35 seqs prokMSA_id:5462 AJ002139.1 Bartonella alsatica str. 382 prokMSA_id:5463 Z31349.1 Bartonella grahamii prokMSA_id:5464 U71322.1 Bartonella sp. str. peromysci prokMSA_id:5465 L35052.1 Bartonella vinsonii subsp. berkhoffae str. 93-C01 prokMSA_id:5466 Z31352.1 Bartonella vinsonii prokMSA_id:5469 Z31350.1 Bartonella taylorii prokMSA_id:5473 Z11684.1 Bartonella henselae prokMSA_id:5474 U26258.1 Bartonella vinsonii prokMSA_id:5475 Z70005.1 Bartonella sp. prokMSA_id:5481 AJ003070.1 Bartonella tribocorum str. IBS 506 prokMSA_id:5482 AF070463.1 Bartonella sp. NVH1 str. nvh1 prokMSA_id:5483 Z70008.1 Bartonella sp. prokMSA_id:5484 Z70004.1 Bartonella sp. prokMSA_id:5485 M73230.1 Bartonella vinsonii prokMSA_id:5487 M73229.1 Bartonella henselae prokMSA_id:5489 AJ223778.1 Bartonella henselae FR96/BK3 prokMSA_id:5490 AJ223779.1 Bartonella henselae FR96/BK38 prokMSA_id:5491 AJ223780.1 Bartonella henselae FR97/K7 prokMSA_id:5493 AF076237.1 Bartonella koehlerae str. C-29; ATCC 700693 prokMSA_id:5496 L01259.1 Bartonella vinsonii prokMSA_id:5498 Z70006.1 Bartonella sp. prokMSA_id:5499 Z70007.1 Bartonella sp. prokMSA_id:5500 Z70002.1 Bartonella sp. prokMSA_id:5501 Z70001.1 Bartonella sp. prokMSA_id:5502 L01260.1 Bartonella elizabethae prokMSA_id:5505 Z31351.1 Bartonella doshiae prokMSA_id:17437 AF214558.1 Bartonella vinsonii subsp. arupensis prokMSA_id:25328 AF293390.1 Bartonella sp. str. IBS 206 prokMSA_id:46747 AF204274.1 Bartonella birtlesii str. 325 prokMSA_id:49049 AF293389.1 Bartonella capreoli str. IBS 193 prokMSA_id:52831 AF214556.1 Bartonella henselae str. URLLY8 prokMSA_id:53421 AF143446.1 Bartonella vinsonii subsp. berkhoffii str. URBVAIE25 subsp. prokMSA_id:102066 BX897699.1 Bartonella henselae str. Houston-1 prokMSA_id:103693 AY513504.1 Bartonella henselae str. 882_ANT5 prokMSA_id:108366 NC_005956.1 Bartonella henselae str. Houston-1 2.43.1.11.2 Beijerinck/Rhodoplan/Methylocyst 1 seq 2.43.1.11.2.1 sf_1 1 seq 2.43.1.11.2.1.7591 OTU 1 seq prokMSA_id:80741 AY192274.1 Rocky Mountain alpine soil clone W2b-8B 2.43.1.11.3 Bradyrhizobiaceae 4 seqs 2.43.1.11.3.1 sf_1 4 seqs 2.43.1.11.3.1.6824 OTU 1 seq prokMSA_id:33444 AF256044.1 Pine (Pinus merkusii) forest soil clone GT20-1a 2.43.1.11.3.1.7029 OTU 1 seq prokMSA_id:16718 AJ318118.1 Waste-gas biofilter clone BIfci45 2.43.1.11.3.1.7096 OTU 1 seq prokMSA_id:49111 AY037671.1 earthworm cast clone C013 2.43.1.11.3.1.7629 OTU 1 seq prokMSA_id:4968 AF013541.2 volcanic cinder field Sunset Crater Arizona clone 2.43.1.11.4 Brucellaceae 54 seqs 2.43.1.11.4.1 sf_1 54 seqs 2.43.1.11.4.1.6671 OTU 1 seq prokMSA_id:23285 AJ276433.1 United Kingdom:Wales isolate str. NHG3 2.43.1.11.4.1.6757 OTU 31 seqs prokMSA_id:5183 U88441.1 Ochrobactrum anthropi str. LMG 3309 prokMSA_id:5184 U88442.1 Ochrobactrum anthropi str. LMG 3310 prokMSA_id:5185 U88443.1 Ochrobactrum anthropi str. LMG 3329 prokMSA_id:5186 U88444.1 Ochrobactrum anthropi str. LMG 2320 prokMSA_id:5187 AJ002812.1 Ochrobactrum sp. S1 prokMSA_id:22778 AF229883.1 Ochrobactrum sp. str. 3CB4 prokMSA_id:27684 AF229875.1 Ochrobactrum sp. str. 4FB9 prokMSA_id:30119 AF229865.1 Ochrobactrum sp. str. 2FB10 prokMSA_id:39018 AF229884.1 Ochrobactrum sp. str. 3CB5 prokMSA_id:45685 AF229880.1 Ochrobactrum sp. str. 4FB14 prokMSA_id:48491 AJ242576.2 Ochrobactrum anthropi str. CLM18 prokMSA_id:48732 AJ276036.1 Ochrobactrum anthropi GH 1568 prokMSA_id:49728 AJ249458.1 Ochrobactrum sp. FRG11/sat prokMSA_id:56400 AF508091.1 Ochrobactrum tritici TG23 prokMSA_id:62899 AF526521.2 Ochrobactrum anthropi ADV17 prokMSA_id:62900 AF526523.2 Ochrobactrum anthropi CLF19 prokMSA_id:62906 AF526520.2 Ochrobactrum anthropi ADV16 prokMSA_id:66248 AF508090.1 Ochrobactrum tritici TG13 prokMSA_id:66250 AF508092.1 Ochrobactrum tritici TG161 prokMSA_id:66251 AF508089.1 Ochrobactrum tritici TJ3 prokMSA_id:74565 AF526519.2 Ochrobactrum anthropi ADV15 prokMSA_id:91199 AY331580.1 Ochrobactrum sp. str. mp-6 prokMSA_id:99693 AY662685.1 Ochrobactrum sp. str. AS12 prokMSA_id:101529 AY623625.1 Ochrobactrum sp. str. TD prokMSA_id:102114 AY730720.1 Ochrobactrum anthropi str. 130704Ws10 prokMSA_id:106059 AY661464.1 Ochrobactrum sp. B2 prokMSA_id:107360 AY513493.1 Ochrobactrum anthropi str. 2002030421 prokMSA_id:107504 AY513494.1 Ochrobactrum anthropi str. 2000037232 prokMSA_id:107647 AY513495.1 Ochrobactrum anthropi str. 1999045026 prokMSA_id:108389 AY776289.1 Ochrobactrum anthropi str. ESC1 prokMSA_id:109259 AJ242577.2 Ochrobactrum anthropi str. CLM14 2.43.1.11.4.1.6973 OTU 1 seq prokMSA_id:5180 X54743.1 Solomonas fluorantheni str. DSM IDD 89-130 2.43.1.11.4.1.6981 OTU 1 seq prokMSA_id:76582 AJ519939.1 Ochrobactrum gallinifaecis str. Iso 196 2.43.1.11.4.1.6995 OTU 5 seqs prokMSA_id:24208 AF229879.1 Ochrobactrum sp. str. 4FB13 prokMSA_id:31117 AF229848.1 Ochrobactrum sp. str. PR17 prokMSA_id:70316 AF452128.1 Ochrobactrum sp. str. LMG 20564 prokMSA_id:70645 AY040351.1 Ochrobactrum sp. str. LMG 20570 prokMSA_id:90730 AJ550273.2 Ochrobactrum sp. TK14 2.43.1.11.4.1.7116 OTU 14 seqs prokMSA_id:5169 L26169.1 Brucella suis prokMSA_id:5170 L26168.1 Brucella ovis prokMSA_id:5175 L26166.1 Brucella melitensis prokMSA_id:5189 L37584.1 Brucella canis prokMSA_id:5192 AF091354.1 Brucella melitensis biovar Abortus str. 544 biovar prokMSA_id:5195 U70978.1 Ochrobactrum anthropi prokMSA_id:5196 AJ249720.1 Ochrobactrum intermedium str. 609360 I prokMSA_id:5197 U88440.1 Ochrobactrum anthropi str. LMG 3306 prokMSA_id:5204 X13695.1 Brucella abortus prokMSA_id:57487 AF526513.2 Ochrobactrum intermedium ADV14 prokMSA_id:59527 AB091758.1 Ochrobactrum tritici AS1 prokMSA_id:62908 AF526514.2 Ochrobactrum intermedium ADV21 prokMSA_id:68455 AF459798.1 Tetraponera binghami symbiont prokMSA_id:72183 AJ415570.1 Ochrobactrum intermedium str. 0102 808 2.43.1.11.4.1.7310 OTU 1 seq prokMSA_id:5164 D63836.1 Ochrobacterium sp. IFO12950 2.43.1.11.5 Hyphomicrobiaceae 34 seqs 2.43.1.11.5.1 sf_1 34 seqs 2.43.1.11.5.1.6695 OTU 1 seq prokMSA_id:43964 AF190222.1 obtained dinoflagellate Pfiesteria piscicida isolate str. RSppiC2 2.43.1.11.5.1.6747 OTU 1 seq prokMSA_id:71382 AF317355.1 feedlot manure clone A6 2.43.1.11.5.1.6787 OTU 1 seq prokMSA_id:48622 U58013.1 selected with Methylosinus specific probe 2.43.1.11.5.1.6801 OTU 1 seq prokMSA_id:4703 X77126.1 Azorhizobium caulinodans str. LMG 6829 2.43.1.11.5.1.6822 OTU 1 seq prokMSA_id:4694 AF084504.1 Blastochloris viridis str. G11 2.43.1.11.5.1.6849 OTU 1 seq prokMSA_id:50340 AF321203.1 USA: Rabbit Creek Yellowstone clone rcr_52 2.43.1.11.5.1.7030 OTU 2 seqs prokMSA_id:34126 AJ252701.1 Rhizosphere soil RSC-II-90 () clone RSC-II-90 prokMSA_id:38212 AJ252699.1 Rhizosphere soil RSC-II-84 () clone RSC-II-84 2.43.1.11.5.1.7076 OTU 4 seqs prokMSA_id:4666 AF084502.1 Blastochloris viridis str. G8 prokMSA_id:4668 AF084506.1 Blastochloris viridis str. B4 prokMSA_id:4692 AF084499.1 Blastochloris viridis str. G5 prokMSA_id:4697 AF084509.1 Blastochloris viridis str. B9 2.43.1.11.5.1.7101 OTU 2 seqs prokMSA_id:4695 AF084505.1 Blastochloris viridis str. G12 prokMSA_id:4696 AF084507.1 Blastochloris viridis str. B5 2.43.1.11.5.1.7144 OTU 2 seqs prokMSA_id:4716 U68615.1 Amazon clone M29 prokMSA_id:4717 U68680.1 Amazon clone P57 2.43.1.11.5.1.7167 OTU 1 seq prokMSA_id:32066 AF424279.1 clone MERTZ_0CM_99 2.43.1.11.5.1.7213 OTU 2 seqs prokMSA_id:40238 AF445108.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc42 prokMSA_id:48489 AF445102.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc35 2.43.1.11.5.1.7337 OTU 11 seqs prokMSA_id:23394 AY037644.1 soil clone S139 prokMSA_id:30114 AY037758.1 earthworm cast clone C156 prokMSA_id:31892 AY037712.1 earthworm cast clone C062 prokMSA_id:36311 AF445156.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc99 prokMSA_id:41548 AF445149.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc91 prokMSA_id:42429 AF445104.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc38 prokMSA_id:44875 AJ252676.1 Rhizosphere soil RSC-II-17 () clone RSC-II-17 prokMSA_id:46714 AF445132.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc72 prokMSA_id:48161 AF445116.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc52 prokMSA_id:85332 AY242678.1 soil clone Tc132-50 prokMSA_id:85348 AY242673.1 soil clone Tc129-17 2.43.1.11.5.1.7352 OTU 1 seq prokMSA_id:4665 AF084501.1 Blastochloris viridis str. G7 2.43.1.11.5.1.7392 OTU 1 seq prokMSA_id:76573 AJ534618.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-182 2.43.1.11.5.1.7488 OTU 1 seq prokMSA_id:32098 AF445138.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc78 2.43.1.11.5.1.7494 OTU 1 seq prokMSA_id:21290 AJ252656.1 Agricultural soil SC-I-78 () clone SC-I-78 2.43.1.11.6 Phyllobacteriaceae 136 seqs 2.43.1.11.6.1 sf_1 136 seqs 2.43.1.11.6.1.6673 OTU 2 seqs prokMSA_id:60695 AF534573.1 Nitratireductor aquibiodomus str. NL21 prokMSA_id:77579 AB098586.1 Mesorhizobium sp. str. TUT1018 2.43.1.11.6.1.6692 OTU 2 seqs prokMSA_id:24063 AF441726.1 India: Himalayas Kaza Spiti Valley Cold Desert isolate str. Kaza-27 Kaza-27 prokMSA_id:108926 AY786080.1 Phyllobacterium trifolii str. PETP02 2.43.1.11.6.1.6854 OTU 1 seq prokMSA_id:35051 Y15341.1 Rhizobium sp. PRLIST04 2.43.1.11.6.1.6857 OTU 26 seqs prokMSA_id:5082 D12791.1 Mesorhizobium loti prokMSA_id:5083 Y14160.1 Mesorhizobium loti str. LMG 6124 prokMSA_id:5084 Z94807.1 Mesorhizobium genosp. T str. BDV5908 prokMSA_id:5085 U50166.1 Mesorhizobium loti prokMSA_id:5091 D13431.1 Mesorhizobium huakuii prokMSA_id:5093 D12797.1 Mesorhizobium huakuii prokMSA_id:5094 AF041442.1 Mesorhizobium amorphae str. ACCC 19665 prokMSA_id:5096 Y14159.1 Mesorhizobium loti str. LMG 6123 prokMSA_id:5097 Z94819.1 Mesorhizobium genosp. U str. BDV5514 prokMSA_id:5098 AF041444.1 Mesorhizobium sp. 'SH 15003' str. SH 15003 'SH prokMSA_id:5131 AF178964.1 root nodule isolate str. WSM1497 prokMSA_id:5157 L38825.1 Mesorhizobium mediterraneum prokMSA_id:20161 AF410897.1 Mesorhizobium sp. str. Lo7-12 prokMSA_id:31415 AJ278249.1 Mesorhizobium chacoense str. PR5 prokMSA_id:35595 AJ295493.1 rape rhizosphere clone wr0035 prokMSA_id:37613 AF282928.1 Mesorhizobium sp. str. USDA 3466 prokMSA_id:48243 AJ295081.1 Mesorhizobium sp. str. ORS1259 (LMG 15324) ORS1259 prokMSA_id:57886 AY141984.1 Mesorhizobium sp. str. SH267neu prokMSA_id:57887 AY141983.1 Mesorhizobium sp. str. SH2851 prokMSA_id:62975 AF526933.1 Mars Odyssey Orbiter and encapsulation facility clone 84-5 sp. prokMSA_id:81497 AY195845.1 Mesorhizobium ciceri str. FCA08 prokMSA_id:81730 AY195846.1 Mesorhizobium tianshanense str. RCAN03 prokMSA_id:81838 AY195844.1 Mesorhizobium mediterraneum str. PECA20 prokMSA_id:82013 AF514800.1 Mesorhizobium sp. str. ORS207 prokMSA_id:82201 AY195843.1 Mesorhizobium mediterraneum str. PECA03 prokMSA_id:108371 AY776191.1 Rhizobium sp. str. AC39a 2.43.1.11.6.1.6874 OTU 1 seq prokMSA_id:5162 U71079.1 Mesorhizobium tianshanense str. -1BS 2.43.1.11.6.1.6876 OTU 1 seq prokMSA_id:5163 AF003376.1 Rhizobium sp. str. SH2672 2.43.1.11.6.1.6916 OTU 1 seq prokMSA_id:83392 AJ441009.1 lake microbial mat isolate str. R-9219 2.43.1.11.6.1.6962 OTU 1 seq prokMSA_id:5114 AJ132378.1 Defluvibacter lusatiensis str. DSM11099T 2.43.1.11.6.1.6966 OTU 5 seqs prokMSA_id:5146 AF041447.1 Mesorhizobium tianshanense str. -1BS; USDA 3592 prokMSA_id:22176 AF282926.1 Mesorhizobium sp. str. N33 prokMSA_id:24617 AF479641.1 Mesorhizobium sp. str. Lc3-2 prokMSA_id:30025 AF282927.1 Mesorhizobium sp. str. N39 prokMSA_id:42551 AF282923.1 Mesorhizobium sp. str. N31 2.43.1.11.6.1.7009 OTU 2 seqs prokMSA_id:29660 AF190214.1 obtained Pfiesteria-complex dinoflagellate CCMP 1829 isolate str. RSHD3S10 prokMSA_id:68663 AJ439366.1 WIg-12 2.43.1.11.6.1.7139 OTU 25 seqs prokMSA_id:5122 X67230.1 Mesorhizobium loti prokMSA_id:5124 Z94817.1 Mesorhizobium genosp. S str. BDV5911 prokMSA_id:5125 U50167.1 Mesorhizobium sp. prokMSA_id:5127 U07934.1 Mesorhizobium ciceri str. UPM-Ca7 prokMSA_id:5129 AF178962.1 root nodule isolate str. WSM1284 prokMSA_id:5132 U50168.1 Mesorhizobium sp. prokMSA_id:5151 X67229.2 Mesorhizobium loti prokMSA_id:5152 AF041445.1 Mesorhizobium sp. str. HL56 prokMSA_id:5153 U50164.1 Mesorhizobium loti prokMSA_id:5154 U50165.1 Mesorhizobium loti prokMSA_id:5155 Y10175.1 Rhizobium sp. str. CIAM1414 prokMSA_id:18809 AF410896.1 Mesorhizobium sp. str. Lo9-4 prokMSA_id:22616 AJ417083.1 Mesorhizobium sp. Rch-19B prokMSA_id:23862 AJ417090.1 Mesorhizobium sp. Rch-10B prokMSA_id:27176 AJ295492.1 rape rhizosphere clone wr0034 prokMSA_id:37829 AF282922.1 Mesorhizobium sp. str. N1 prokMSA_id:39417 AF282925.1 Mesorhizobium sp. str. N20 prokMSA_id:39581 AJ417089.1 Mesorhizobium sp. Rch-2B prokMSA_id:41882 AF282929.1 Mesorhizobium sp. str. USDA 4003 prokMSA_id:45557 AJ271899.1 Mesorhizobium amorphae str. rob8 prokMSA_id:48799 AJ417082.1 Mesorhizobium sp. Rch-981 prokMSA_id:66200 AJ487829.1 Mesorhizobium ciceri str. Rch9816 prokMSA_id:81855 AY206686.1 Mesorhizobium ciceri str. C-2/2 prokMSA_id:101371 AY601513.1 Mesorhizobium sp. str. WSM1271 prokMSA_id:112199 AY904731.1 Mesorhizobium ciceri str. SEMIA 396 2.43.1.11.6.1.7168 OTU 2 seqs prokMSA_id:21643 AF194396.1 molecular isolate; brown tide algal CCMP1784 clone kpc17 prokMSA_id:74699 AY007677.1 marine JP66.1 2.43.1.11.6.1.7216 OTU 1 seq prokMSA_id:5135 D88524.1 Ahrensia kielensis str. IAM12618 2.43.1.11.6.1.7225 OTU 1 seq prokMSA_id:31507 AF424284.1 clone MERTZ_0CM_243 2.43.1.11.6.1.7300 OTU 1 seq prokMSA_id:74157 AY007683.1 marine isolate JP57 2.43.1.11.6.1.7332 OTU 1 seq prokMSA_id:5116 AF013537.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.43.1.11.6.1.7379 OTU 7 seqs prokMSA_id:5115 D12789.1 Phyllobacterium myrsinacearum prokMSA_id:5118 AJ011330.1 Phyllobacterium myrsinacearum HM35 prokMSA_id:5120 X98418.1 Nanobacterium sanguineum Seralab FBS batch 901045 prokMSA_id:5121 X98419.1 Nanobacterium sp. Seralab FBS batch 901045 prokMSA_id:17238 AF290484.1 cf. Phyllobacterium myrsinacearum clone Llangefni 18 prokMSA_id:21666 AF290483.1 cf. Phyllobacterium rubiacearum clone Llangefni 28 prokMSA_id:35523 AJ295441.1 rape rhizosphere tsb051 2.43.1.11.6.1.7381 OTU 10 seqs prokMSA_id:5107 AJ011759.1 Aminobacter aminovorans str. DSM7048T prokMSA_id:5109 AF107722.1 Methylotrophic complete isolate str. CC495 CC495 prokMSA_id:5140 AJ011762.1 Aminobacter aminovorans str. DSM6450T prokMSA_id:5141 AF034798.1 Methylotrophic complete isolate str. IMB-1 IMB-1 prokMSA_id:5144 AJ011760.1 Aminobacter aganoensis str. DSM7051T prokMSA_id:26552 AF250404.1 Methylotrophic isolate str. loc440 prokMSA_id:31369 AF246220.1 Pseudaminobacter sp. str. C147 prokMSA_id:41787 AF329835.1 Aminobacter aminovorans str. Ep2-1c prokMSA_id:50798 AF250406.1 Aminobacter aminovorans str. 435 prokMSA_id:52607 AF256055.1 Aminobacter aminovorans str. Cit1 2.43.1.11.6.1.7416 OTU 1 seq prokMSA_id:39227 AF323256.1 bioreactor processing inorganic sulfide and mercaptans isolate str. B1G-2 B1G-2 2.43.1.11.6.1.7497 OTU 43 seqs prokMSA_id:5133 Y11584.1 'Mena 25/4-1' isolate str. Mena 25/4-1 (DSM 11455) 'Mena prokMSA_id:21876 AF279889.1 Rhizobium sp. str. H-4 prokMSA_id:21931 AF227754.1 Sinorhizobium sp. str. C2 prokMSA_id:24111 AF150703.1 Elbe River snow isolate Iso26 Iso26_1389 prokMSA_id:25630 AF325730.1 Rhizobium sp. str. N1 prokMSA_id:32754 AF234721.1 sludge clone A7 prokMSA_id:38122 AF156710.1 Mesorhizobium sp. str. WG prokMSA_id:38141 AJ294416.1 Pseudaminobacter salicylatoxidans str. KTC001 prokMSA_id:49052 AF377867.1 USA: Maine forest soil clone COX1 prokMSA_id:52697 AF364852.1 Sinorhizobium sp. str. FJ38 37D prokMSA_id:63530 AY117620.1 Mesorhizobium sp. str. PRF86 prokMSA_id:66931 AJ306768.1 DCP-dechlorinating consortium clone SHA-85 prokMSA_id:69342 AY147203.1 Mesorhizobium sp. str. CCBAU25126 prokMSA_id:83113 AY230775.1 Mesorhizobium sp. 'Smarlab BioMol-2302657' str. Smarlab BioMol 2302657 'Smarlab prokMSA_id:87097 AF509913.1 Mesorhizobium sp. str. Leb-4 prokMSA_id:87262 AF509929.1 Mesorhizobium sp. str. Loc-1 prokMSA_id:87396 AF509921.1 Mesorhizobium sp. str. Rop-1 prokMSA_id:87441 AF509915.1 Mesorhizobium sp. str. Rop-4 prokMSA_id:87647 AF509923.1 Mesorhizobium sp. str. Amf-4 prokMSA_id:87700 AF509910.1 Mesorhizobium sp. str. Leb-1 prokMSA_id:87919 AF509930.1 Mesorhizobium sp. str. Amf-5 prokMSA_id:90640 AY307924.1 Aminobacter sp. str. COX prokMSA_id:91742 AY331575.1 Pseudaminobacter sp. str. mp-1 prokMSA_id:93996 AJ581584.1 Soil collected near non-ferrous metal smelting factory KCM clone KCM-B-5 prokMSA_id:101373 AY444976.1 biofilm on oxygen-transfer membrane clone M12 prokMSA_id:102924 AJ604541.1 Collembola-associated clone za05 prokMSA_id:103929 AJ622941.1 Aminobacter sp. C4 prokMSA_id:105667 AJ536673.1 bulk rice field soil isolate str. RBS3-62 prokMSA_id:105818 AJ536674.1 rice rhizoplane isolate str. RRP3-6 prokMSA_id:105972 AJ536675.1 rice rhizoplane isolate str. RRP-E1 prokMSA_id:106122 AJ536676.1 rice rhizoplane isolate str. RRP-E2 prokMSA_id:107019 AY138234.1 human stomach biopsy clone Sto2-1 prokMSA_id:107317 AY138236.1 human stomach biopsy clone Sto2-3 prokMSA_id:108370 AY776184.1 Rhizobium sp. str. AC21c2 prokMSA_id:109828 AY490116.1 Mesorhizobium sp. str. lema-2 prokMSA_id:110370 AY490127.1 Mesorhizobium sp. str. amfr-4 prokMSA_id:110510 AY490102.1 Mesorhizobium sp. str. amfr-2 prokMSA_id:110597 AY490125.1 Mesorhizobium sp. str. rops-3 prokMSA_id:110931 AY490123.1 Mesorhizobium sp. str. lebi-7 prokMSA_id:110952 AY490129.1 Mesorhizobium sp. str. wifl-2 prokMSA_id:111381 AY875975.1 Sinorhizobium sp. str. ORS3178 prokMSA_id:113594 AY922072.1 farm soil adjacent to silage storage bunker clone AKYG882 prokMSA_id:113930 AY921793.1 farm soil adjacent to silage storage bunker clone AKYH1282 2.43.1.11.6.1.7543 OTU 1 seq prokMSA_id:73511 AJ318199.1 Waste-gas biofilter clone BIwii1 2.43.1.11.6.1.7635 OTU 1 seq prokMSA_id:44534 Z88572.1 HNSS21 2.43.1.11.7 Rhizobiaceae 378 seqs 2.43.1.11.7.1 sf_1 378 seqs 2.43.1.11.7.1.6634 OTU 1 seq prokMSA_id:5393 U71078.1 Rhizobium hainanensis 2.43.1.11.7.1.6649 OTU 13 seqs prokMSA_id:5267 U86344.1 Rhizobium giardinii prokMSA_id:16351 AF423251.1 soil clone 353-2 prokMSA_id:74374 AF357225.1 Sinorhizobium sp. str. 9702-M4 prokMSA_id:75607 AY064413.2 Rhizobium sp. str. DCP3 prokMSA_id:76783 AY064412.2 Rhizobium sp. str. DCP2 prokMSA_id:78442 AY177365.2 Rhizobium sp. str. M16 prokMSA_id:86944 AF511492.1 Rhizobium sp. str. Aei-5 prokMSA_id:97267 AY427206.1 Rhizobium sp. NET30 prokMSA_id:100053 AY599686.1 fungal ascocarp clone Cl-100-TB4-I prokMSA_id:100370 AY599688.1 fungal ascocarp clone Cl-4-TB4-I prokMSA_id:100554 AY505135.1 Sinorhizobium sp. str. TB2-10 prokMSA_id:100682 AY599702.1 Rhizobium sp. str. TB2-10-I prokMSA_id:107077 AY500257.1 Rhizobium sp. str. ORS 1439 2.43.1.11.7.1.6683 OTU 40 seqs prokMSA_id:5209 X68388.2 Sinorhizobium teranga prokMSA_id:5210 X68390.2 Sinorhizobium saheli prokMSA_id:5217 D14516.1 Sinorhizobium fredii prokMSA_id:5231 Z78204.1 Sinorhizobium sp. str. HAMBI 1552 prokMSA_id:5249 X68387.1 Sinorhizobium teranga prokMSA_id:5255 X67231.1 Sinorhizobium fredii prokMSA_id:5256 AJ004860.1 Sinorhizobium sp. str. MSMC310 prokMSA_id:5258 Z78203.1 Sinorhizobium sp. str. HAMBI 1489 prokMSA_id:5260 D12796.1 Sinorhizobium xinjiangensis prokMSA_id:16617 AJ298869.1 Sinorhizobium sp. str. M3A prokMSA_id:20311 AF250353.1 Sinorhizobium xinjiangense str. Rx22 prokMSA_id:24151 AF268072.1 Sinorhizobium sp. 15C-4 prokMSA_id:24812 AJ417088.1 Sinorhizobium sp. Rch-9813 prokMSA_id:26055 AY024335.1 Ensifer adhaerens str. Lc04 prokMSA_id:32607 AF250355.1 Sinorhizobium xinjiangense str. CCBAU830804 prokMSA_id:39113 AF250377.1 Sinorhizobium xinjiangense str. CCBAU 830844 prokMSA_id:39392 AJ295076.1 Sinorhizobium sp. str. ORS1231 (LMG 15307) ORS1231 prokMSA_id:39445 AJ417086.1 Sinorhizobium sp. Rch-9868 prokMSA_id:42233 AF227756.1 Sinorhizobium sp. str. C9 prokMSA_id:43632 AJ295072.1 Sinorhizobium sp. str. RAT902 (R8390) prokMSA_id:51380 AF285963.1 Sinorhizobium sp. str. S005 prokMSA_id:52806 AF250354.1 Sinorhizobium xinjiangense str. CCBAU110 prokMSA_id:59132 AY148434.1 Rhizobium sp. str. JH1 prokMSA_id:59133 AY148433.1 Rhizobium sp. str. AB3 prokMSA_id:66158 AF506513.2 Sinorhizobium americanus str. CFNEI 156 prokMSA_id:71225 AJ295075.1 Sinorhizobium terangae str. ORS1254 (LMG 15319) prokMSA_id:74392 AJ295077.1 Sinorhizobium sp. str. ORS1236 (LMG 18076) ORS1236 prokMSA_id:74439 AJ295078.1 Sinorhizobium sp. str. ORS1085 (LMG 15292) ORS1085 prokMSA_id:83138 AY260149.1 Sinorhizobium fredii str. USDA205 prokMSA_id:83976 AY260145.1 Sinorhizobium fredii str. HH103 prokMSA_id:85246 AY260144.1 Sinorhizobium fredii str. HH003 prokMSA_id:85533 AY260150.1 Sinorhizobium fredii str. USDA257 prokMSA_id:103177 AJ846889.1 Sinorhizobium sp. CCBAU33036a prokMSA_id:106448 AY500253.1 Sinorhizobium sp. str. ORS 1444 prokMSA_id:106610 AY500254.1 Sinorhizobium sp. str. ORS 1407 prokMSA_id:106769 AY500255.1 Sinorhizobium sp. str. ORS 1400 prokMSA_id:107806 AY528932.1 Agrobacterium tumefaciens str. TJYJ prokMSA_id:108837 AB195268.1 Sinorhizobium fredii HC7 HC10 CF10 CA13 prokMSA_id:111751 AY904727.1 Sinorhizobium meliloti str. SEMIA 134 prokMSA_id:111921 AY904726.1 Sinorhizobium meliloti str. SEMIA 103 2.43.1.11.7.1.6725 OTU 14 seqs prokMSA_id:5220 D12783.1 Sinorhizobium meliloti prokMSA_id:5221 X77121.1 Sinorhizobium meliloti str. LMG 8890 prokMSA_id:5226 X67222.2 Sinorhizobium meliloti prokMSA_id:5227 AJ004861.1 Sinorhizobium sp. str. MSMC411 prokMSA_id:5232 AF054930.2 Rhizobium sp. str. XJ96060 prokMSA_id:5233 AF054931.2 Rhizobium sp. str. XJ96408 prokMSA_id:5245 D14509.1 Sinorhizobium meliloti prokMSA_id:27872 AF285964.1 Sinorhizobium sp. str. S007 prokMSA_id:48966 AJ295071.1 Sinorhizobium meliloti str. ORS1044 (LMG 15285) prokMSA_id:61016 AF533684.1 Sinorhizobium meliloti str. WSM1701 prokMSA_id:64021 AL591782.1 Sinorhizobium meliloti str. 1021 prokMSA_id:78604 AY177355.2 Rhizobium sp. str. I6 prokMSA_id:82107 AY196962.1 Sinorhizobium meliloti str. GVPV12 prokMSA_id:82287 AY196963.1 Sinorhizobium meliloti str. LMTR32 2.43.1.11.7.1.6727 OTU 1 seq prokMSA_id:45429 AB054953.1 Rhizobium sp. str. 1003 2.43.1.11.7.1.6729 OTU 1 seq prokMSA_id:32320 AF441727.1 India: Himalayas Kaza Spiti Valley Cold Desert isolate str. Kaza-29 Kaza-29 2.43.1.11.7.1.6770 OTU 26 seqs prokMSA_id:5273 X67224.1 Rhizobium rhizogenes prokMSA_id:5275 D12798.1 Rhizobium tropici prokMSA_id:5276 X67234.2 Rhizobium tropici prokMSA_id:5277 U89832.1 Rhizobium tropici str. CIAT 899; USDA 9030 prokMSA_id:5278 X67233.1 Rhizobium leguminosarum prokMSA_id:5280 U38469.1 Rhizobium tropici prokMSA_id:5281 D14501.1 Agrobacterium tumefaciens prokMSA_id:5282 D11344.1 Rhizobium tropici prokMSA_id:5283 D14504.1 Agrobacterium tumefaciens prokMSA_id:5284 Z94806.1 Rhizobium genosp. Q str. BDV5102 prokMSA_id:5289 D12788.1 Agrobacterium rhizogenes str. IAM 13570 prokMSA_id:5292 X67232.1 Rhizobium species prokMSA_id:5293 D14505.1 Agrobacterium tumefaciens prokMSA_id:17261 AF417564.1 Rhizobium leguminosarum str. DASA23046 prokMSA_id:24266 AF417562.1 Rhizobium leguminosarum str. DASA23002 prokMSA_id:29133 AB079726.1 Rhizobium sp. str. PDA-1 prokMSA_id:47187 AF417563.1 Rhizobium leguminosarum str. DASA23111 prokMSA_id:48790 AF417565.1 Rhizobium leguminosarum str. DASA23052 prokMSA_id:63509 AY117667.1 Rhizobium tropici str. PRF77 prokMSA_id:76567 AY166841.1 Rhizobium tropici str. UPRM8033 prokMSA_id:80113 AY221178.1 Rhizobium tropici EBRI 32 prokMSA_id:80813 AY221174.1 Rhizobium etli EBRI 2 prokMSA_id:81692 AF514802.1 Rhizobium sp. str. ORS217 prokMSA_id:82246 AF514801.1 Rhizobium sp. str. ORS214 prokMSA_id:100668 AY591784.1 Rhizobium sp. str. IRP132 prokMSA_id:103488 AY738130.2 Rhizobium lusitanum str. p1-7 2.43.1.11.7.1.6798 OTU 4 seqs prokMSA_id:55671 AF508098.1 Agrobacterium tumefaciens TG12 prokMSA_id:56300 AF508099.1 Agrobacterium tumefaciens TG14 prokMSA_id:66244 AF508097.1 Agrobacterium tumefaciens S4 prokMSA_id:66245 AF508096.1 Agrobacterium tumefaciens N21 2.43.1.11.7.1.6804 OTU 1 seq prokMSA_id:5424 AF003374.1 Rhizobium sp. str. SH19312 2.43.1.11.7.1.6813 OTU 1 seq prokMSA_id:5364 Z94803.1 Rhizobium genosp. R str. BDV5365 2.43.1.11.7.1.6840 OTU 1 seq prokMSA_id:51992 AF423220.1 soil clone 1315-2 2.43.1.11.7.1.6847 OTU 1 seq prokMSA_id:5389 U29387.1 Rhizobium sp. 2.43.1.11.7.1.6861 OTU 1 seq prokMSA_id:34931 AB015420.1 Sinorhizobium indiaensis str. Ra-3 2.43.1.11.7.1.6871 OTU 1 seq prokMSA_id:5304 U89816.1 Rhizobium mongolense str. USDA 1832 2.43.1.11.7.1.6895 OTU 2 seqs prokMSA_id:77394 AY167830.1 Rhizobium galegae str. SAFR-031 prokMSA_id:77532 AY167831.1 Rhizobium galegae str. SAFR-030 2.43.1.11.7.1.6919 OTU 1 seq prokMSA_id:5263 X73042.1 Blastobacter capsulatus 2.43.1.11.7.1.6931 OTU 1 seq prokMSA_id:5266 X73041.1 Blastobacter aggregatus 2.43.1.11.7.1.6964 OTU 114 seqs prokMSA_id:5409 D14503.1 Rhizobium rubi prokMSA_id:5410 M11223.1 Agrobacterium tumefaciens prokMSA_id:5413 X67223.1 Agrobacterium tumefaciens prokMSA_id:5414 D12787.1 Rhizobium rubi prokMSA_id:5415 D13943.1 Agrobacterium tumefaciens prokMSA_id:5416 Z30542.1 Agrobacterium larrymoorei prokMSA_id:5417 D13294.1 Agrobacterium tumefaciens prokMSA_id:5418 D14500.1 Agrobacterium tumefaciens prokMSA_id:5420 D12784.1 Agrobacterium tumefaciens prokMSA_id:5421 AF195069.1 Rhizobium sp. str. N220 prokMSA_id:5423 Y10169.1 Rhizobium sp. Esparseta 3 prokMSA_id:5425 AJ130719.1 Agrobacterium tumefaciens str. LMG 383 prokMSA_id:5426 AJ130720.1 Agrobacterium sp. str. LMG 11915 prokMSA_id:5427 AJ130721.1 Agrobacterium sp. str. LMG 11936 prokMSA_id:5428 D14506.1 Agrobacterium tumefaciens prokMSA_id:5430 X67228.1 Agrobacterium rubi prokMSA_id:16302 AJ389886.1 Agrobacterium tumefaciens str. CFBP2712 prokMSA_id:17155 AJ389893.1 Agrobacterium tumefaciens str. CFBP2243 prokMSA_id:17589 AJ389896.1 Agrobacterium tumefaciens str. S377 prokMSA_id:18318 AF349910.1 PQQ-producing isolate str. SA-2 prokMSA_id:19718 AJ389900.1 Agrobacterium tumefaciens str. CIP43-76 prokMSA_id:19912 AJ389887.1 Agrobacterium tumefaciens str. CFBP2885 prokMSA_id:20046 AJ389888.1 Agrobacterium tumefaciens str. CFBP2654 prokMSA_id:22329 AF239847.2 Bradyrhizobium japonicum str. PRY62 prokMSA_id:24597 AJ012209.1 Agrobacterium tumefaciens str. C58 prokMSA_id:24608 AJ389901.1 Agrobacterium tumefaciens str. Zutra3-1 prokMSA_id:26040 AJ389902.1 Agrobacterium tumefaciens str. NCPPB1641 prokMSA_id:26338 AJ295683.1 Agrobacterium tumefaciens str. IrT-JG-6 prokMSA_id:27184 AE009324.1 Agrobacterium tumefaciens str. C58 U. Washington str. prokMSA_id:27851 AJ389909.1 Agrobacterium tumefaciens str. Zutra F/1 prokMSA_id:28007 AJ389892.1 Agrobacterium tumefaciens str. CFBP2879 prokMSA_id:29220 AF388033.1 Agrobacterium tumefaciens str. 52 prokMSA_id:29367 AJ389898.1 Agrobacterium tumefaciens str. CIP127-76 prokMSA_id:30092 AJ389890.1 Agrobacterium tumefaciens str. CFBP2717 prokMSA_id:31517 AJ389908.1 Agrobacterium tumefaciens str. O363 prokMSA_id:32570 AE008167.1 Agrobacterium tumefaciens str. C58 Cereon prokMSA_id:32821 AF388030.1 Agrobacterium tumefaciens str. 42 prokMSA_id:33043 AY048887.1 rhizosphere clone Q3-24C12 prokMSA_id:34745 AJ389905.1 Agrobacterium tumefaciens str. Mushin6 prokMSA_id:36063 AY029336.1 Rhizobium sp. str. GH-2001 prokMSA_id:36496 AJ389906.1 Agrobacterium tumefaciens str. ICPB T37 prokMSA_id:37752 AY027505.1 Arsenite-oxidizing BEN-5 prokMSA_id:40914 AJ389899.1 Agrobacterium tumefaciens str. CIP28-75 prokMSA_id:41643 AJ389903.1 Agrobacterium tumefaciens str. RV3 prokMSA_id:41750 NC_003062.1 Agrobacterium tumefaciens str. C58 Cereon prokMSA_id:42402 AJ389897.1 Agrobacterium tumefaciens str. CIP111-78 prokMSA_id:42673 NC_003305.1 Agrobacterium tumefaciens str. C58 U. Washington str. prokMSA_id:43693 AJ389889.1 Agrobacterium tumefaciens str. CFBP2655 prokMSA_id:43713 AE009201.1 Agrobacterium tumefaciens str. C58 U. Washington str. prokMSA_id:44308 AE008265.2 Agrobacterium tumefaciens str. C58 Cereon prokMSA_id:44698 AE008290.2 Agrobacterium tumefaciens str. C58 Cereon prokMSA_id:45163 AJ389894.1 Agrobacterium tumefaciens str. CFBP2884 prokMSA_id:45881 AE008980.1 Agrobacterium tumefaciens str. C58 U. Washington str. prokMSA_id:47953 AF239848.2 Bradyrhizobium japonicum str. PRY65 prokMSA_id:49219 AJ389891.1 Agrobacterium tumefaciens str. CFBP2714 prokMSA_id:49778 AE009348.1 Agrobacterium tumefaciens str. C58 U. Washington str. prokMSA_id:50078 AJ389907.1 Agrobacterium tumefaciens str. 0362 prokMSA_id:51761 AJ389904.1 Agrobacterium tumefaciens prokMSA_id:52254 AJ389895.1 Agrobacterium tumefaciens str. S56 prokMSA_id:52570 AJ295445.1 rape rhizosphere tsb058 prokMSA_id:53312 AE007947.2 Agrobacterium tumefaciens str. C58 Cereon prokMSA_id:53665 AF364838.1 Rhizobium sp. str. IRBG 74 prokMSA_id:53840 NC_003304.1 Agrobacterium tumefaciens str. C58 prokMSA_id:54011 AF364839.1 Rhizobium sp. str. IRBG 74 prokMSA_id:57883 AY141985.1 Rhizobium sp. str. SH1707neu prokMSA_id:59901 AY133098.1 TCE-contaminated site clone ccspost215 prokMSA_id:60998 AF531767.1 Candidatus Rhizobium massiliae isolate str. 90A massiliae prokMSA_id:63604 AY043382.1 Agrobacterium tumefaciens str. AU2259 prokMSA_id:70205 AF316615.1 Agrobacterium albertimagni prokMSA_id:76490 AJ534667.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN24 proteobacterium prokMSA_id:77462 AF271637.1 Rhizobium sp. str. IRBG 74 prokMSA_id:77622 AB074597.1 pea aphid symbiont clone APe4_7 prokMSA_id:77636 AB074652.1 pea aphid symbiont clone APe9_6 prokMSA_id:79849 AY221180.1 Agrobacterium tumefaciens EBRI 20 prokMSA_id:80249 AY221181.1 Agrobacterium tumefaciens EBRI 25 prokMSA_id:81672 AY210716.1 Rhizobium sp. str. Ho-1 prokMSA_id:82847 AY244983.1 cow rumen clone BS32 prokMSA_id:83717 AY174112.1 Agrobacterium sp. JS71 prokMSA_id:87015 AF510634.1 Rhizobium sp. str. Phr-8 prokMSA_id:87376 AF511503.1 Rhizobium sp. str. Gls-5 prokMSA_id:87790 AF510375.1 Rhizobium sp. str. Glm-15 prokMSA_id:87877 AF510373.1 Rhizobium sp. str. Glm-16 prokMSA_id:88011 AF510371.1 Rhizobium sp. str. Glm-14 prokMSA_id:91034 AB102735.2 Agrobacterium tumefaciens str. MAFF301001 prokMSA_id:91417 AB102732.2 Agrobacterium tumefaciens str. MAFF301001 prokMSA_id:91604 AB102733.2 Agrobacterium tumefaciens str. MAFF301001 prokMSA_id:91781 AB102734.2 Agrobacterium tumefaciens str. MAFF301001 prokMSA_id:91971 AY341343.1 Rhizobium daejeonense str. L61T; KCTC 12121 prokMSA_id:94089 AY364329.1 Agrobacterium tumefaciens str. UP-3 prokMSA_id:95229 AY395023.1 midgut host clone NAB19 prokMSA_id:95756 AY379979.1 Agrobacterium sp. str. AHL 7 prokMSA_id:99738 AY599684.1 fungal ascocarp clone Cl-37-TB2-I prokMSA_id:99841 AY626382.1 Agrobacterium larrymoorei str. ICMP 15237 prokMSA_id:99898 AY599685.1 fungal ascocarp clone Cl-49-TB2-I prokMSA_id:99992 AY626383.1 Agrobacterium tumefaciens str. ICMP 369 prokMSA_id:100399 AB114201.1 Agrobacterium tumefaciens TS30 prokMSA_id:100461 AY626386.1 Agrobacterium tumefaciens str. ICMP 7474 prokMSA_id:101802 AY504963.1 Agrobacterium tumefaciens str. CCBAU 65237 prokMSA_id:102582 AF508209.1 Agrobacterium sp. SDW052 str. CCBAU 11052; SDW 052 prokMSA_id:103269 AY513489.1 Agrobacterium tumefaciens str. 2002000903 prokMSA_id:105213 AY626394.1 Agrobacterium rubi str. ICMP 8643 prokMSA_id:106904 AY513490.1 Agrobacterium tumefaciens str. 2003018195 prokMSA_id:107064 AY513491.1 Agrobacterium tumefaciens str. 2003015367 prokMSA_id:107117 AY693663.1 Rhizobium sp. str. EGY4 prokMSA_id:107212 AY513492.1 Agrobacterium tumefaciens str. 2001025242 prokMSA_id:107267 AY693664.1 Rhizobium sp. str. EGY3 prokMSA_id:107537 AB116668.1 Agrobacterium tumefaciens str. KYM-8 prokMSA_id:108855 AY794055.1 Agrobacterium viscosum str. CICC10215 prokMSA_id:109713 AY850392.1 Agrobacterium tumefaciens B8S prokMSA_id:109862 AY851692.1 Agrobacterium tumefaciens prokMSA_id:112289 NC_003063.1 Agrobacterium tumefaciens str. C58 prokMSA_id:112422 AY626387.1 Agrobacterium tumefaciens str. ICMP 10854 prokMSA_id:112433 AY626384.1 Agrobacterium tumefaciens str. ICMP 728 prokMSA_id:112450 AY626385.1 Agrobacterium tumefaciens str. ICMP 6676 2.43.1.11.7.1.6972 OTU 11 seqs prokMSA_id:5218 AF191738.1 Ensifer adhaerens str. ATCC 33499 prokMSA_id:5219 AF191739.1 Ensifer adhaerens str. ATCC 33212 prokMSA_id:27318 AY056832.1 Sinorhizobium sp. str. JL84 prokMSA_id:30671 AY027503.1 Arsenite-oxidizing NT-4 prokMSA_id:36972 AF285962.1 Sinorhizobium sp. str. S002 prokMSA_id:63199 AJ420773.1 Ensifer adhaerens str. 5D19 prokMSA_id:64288 AY040360.1 Ensifer adhaerens str. LMG 20582 prokMSA_id:99767 AY505130.1 Sinorhizobium sp. str. TB4-1 prokMSA_id:105116 AY599696.1 Sinorhizobium sp. str. TB8-8-II prokMSA_id:107920 AB167207.1 Sinorhizobium sp. str. c37 prokMSA_id:107942 AB167234.1 Sinorhizobium sp. str. c93 2.43.1.11.7.1.6974 OTU 1 seq prokMSA_id:46647 AF441730.1 India: Himalayas Kaza Spiti Valley Cold Desert isolate str. Kaza-35 Kaza-35 2.43.1.11.7.1.7041 OTU 13 seqs prokMSA_id:5438 D14510.1 Rhizobium species prokMSA_id:5444 D11343.1 Rhizobium galegae prokMSA_id:5446 D12793.1 Rhizobium galegae prokMSA_id:5448 X67226.2 Rhizobium galegae prokMSA_id:5449 AF025852.1 Rhizobium huautlense prokMSA_id:5452 Z79620.1 Rhizobium galegae str. NBIMTC 2246 prokMSA_id:5454 AF025853.1 Rhizobium galegae str. 59A2 prokMSA_id:25256 AF285965.1 Sinorhizobium sp. str. S009 prokMSA_id:38159 AJ271901.1 Rhizobium sp. str. rob18 prokMSA_id:87964 AF511497.1 Rhizobium sp. str. Gls-3 prokMSA_id:102174 AY500260.1 Rhizobium sp. str. ORS 1463 prokMSA_id:107226 AY500258.1 Rhizobium sp. str. ORS 1411 prokMSA_id:107372 AY500259.1 Rhizobium sp. str. STM 394 2.43.1.11.7.1.7051 OTU 11 seqs prokMSA_id:5171 D12786.1 Mycoplana dimorpha prokMSA_id:5313 AF008127.1 Rhizobium gallicum str. CbS-17 prokMSA_id:5330 D14515.1 Rhizobium sp. 3 prokMSA_id:5338 D12782.1 Rhizobium leguminosarum prokMSA_id:41578 AF239242.1 Rhizobium sp. YAS34 prokMSA_id:42970 AF418953.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTD10 prokMSA_id:47066 AF235998.1 isolate str. A0721 prokMSA_id:87993 AF510633.1 Rhizobium sp. str. Trr-9 prokMSA_id:99589 AY599683.1 fungal ascocarp clone Cl-31-TB2-II prokMSA_id:107114 AJ846892.1 Rhizobium sp. CCBAU33220A prokMSA_id:107862 AY775168.1 Sinorhizobium sp. str. CCBAU 33036A 2.43.1.11.7.1.7070 OTU 1 seq prokMSA_id:39851 AF150709.1 Elbe River snow isolate Iso39 Iso39_948 2.43.1.11.7.1.7113 OTU 1 seq prokMSA_id:5441 Y17047.1 Rhizobium undicola 2.43.1.11.7.1.7120 OTU 1 seq prokMSA_id:5447 D14512.1 Rhizobium sp. 5 2.43.1.11.7.1.7135 OTU 4 seqs prokMSA_id:5311 AF008130.1 Rhizobium gallicum str. R602sp prokMSA_id:5312 AF008126.1 Rhizobium gallicum str. CbS-1 prokMSA_id:5314 AF008128.1 Rhizobium gallicum str. CbS-18 prokMSA_id:5315 AF008129.1 Rhizobium gallicum str. FL27 2.43.1.11.7.1.7145 OTU 1 seq prokMSA_id:5272 X77124.1 Rhizobium sp. str. LMG 10020 2.43.1.11.7.1.7223 OTU 1 seq prokMSA_id:44538 AF422650.1 TCE-sediment clone d041 2.43.1.11.7.1.7334 OTU 5 seqs prokMSA_id:62396 AF529121.1 trichloroethene-contaminated site clone FTLM218 proteobacterium prokMSA_id:66246 AF508094.1 Agrobacterium tumefaciens TJ6 prokMSA_id:66249 AF508093.1 Agrobacterium tumefaciens C4 prokMSA_id:66958 AF482682.1 Agrobacterium sp. str. PB prokMSA_id:75548 AJ532682.1 uranium mill tailings clone Gitt-KF-163 2.43.1.11.7.1.7336 OTU 1 seq prokMSA_id:5335 U89831.1 Rhizobium leguminosarum bv. viciae 2.43.1.11.7.1.7349 OTU 1 seq prokMSA_id:5412 Z29621.1 Azospirillum species 2.43.1.11.7.1.7380 OTU 10 seqs prokMSA_id:5431 U28505.1 Agrobacterium vitis str. S4 prokMSA_id:5432 D14502.1 Agrobacterium vitus prokMSA_id:5437 D12795.1 Rhizobium vitus prokMSA_id:5445 X67225.2 Rhizobium vitus prokMSA_id:5457 U45329.1 Agrobacterium vitis str. NCPPB3554 prokMSA_id:25961 AJ389911.1 Agrobacterium vitis str. CFBP2617 prokMSA_id:31290 AJ389910.1 Agrobacterium vitis str. CFBP2678 prokMSA_id:33557 AJ389912.1 Agrobacterium vitis str. CFBP2736 prokMSA_id:46044 AJ389913.1 Agrobacterium vitis str. CFBP2737 prokMSA_id:98084 AB118158.1 Agrobacterium vitis 2.43.1.11.7.1.7457 OTU 1 seq prokMSA_id:5288 X77127.1 Rhizobium tropici str. LMG 10336 2.43.1.11.7.1.7462 OTU 3 seqs prokMSA_id:5450 AF159452.1 Arsenite-oxidising isolate str. NT-25 prokMSA_id:5451 AF159453.1 Arsenite-oxidising isolate str. NT-26 prokMSA_id:22665 AJ294417.1 Rhizobium sp. str. TCK 2.43.1.11.7.1.7478 OTU 1 seq prokMSA_id:5290 X77125.1 Rhizobium tropici str. LMG 9503 2.43.1.11.7.1.7501 OTU 1 seq prokMSA_id:5405 L22533.1 Librobacter sp. Nelspruit 2.43.1.11.7.1.7568 OTU 86 seqs prokMSA_id:5299 U28916.1 Rhizobium etli prokMSA_id:5301 U47303.1 Rhizobium etli prokMSA_id:5302 U86343.1 Rhizobium gallicum prokMSA_id:5303 AF195031.1 Rhizobium yanglingense str. CCBAU 71462 prokMSA_id:5305 U89818.1 Rhizobium mongolense str. USDA 1834 prokMSA_id:5306 U89819.1 Rhizobium mongolense str. USDA 1836 prokMSA_id:5308 Y10170.1 DSM 14623 prokMSA_id:5309 AF003375.1 Rhizobium yanglingense prokMSA_id:5316 U28939.1 Rhizobium etli prokMSA_id:5320 U89817.1 Rhizobium mongolense prokMSA_id:5322 U89822.1 Rhizobium mongolense str. USDA 1929 prokMSA_id:5325 D14513.1 Rhizobium leguminosarum prokMSA_id:5331 U89823.1 Rhizobium sp. str. USDA 1920 prokMSA_id:5333 Y10173.1 Rhizobium sullae str. HCNT 1 prokMSA_id:5334 U29386.1 Rhizobium leguminosarum prokMSA_id:5352 X67227.1 Rhizobium leguminosarum prokMSA_id:5353 U73208.1 Rhizobium leguminosarum str. Rlt E11 prokMSA_id:5354 U73209.1 Rhizobium leguminosarum str. Rtl E12 prokMSA_id:5357 U89826.1 Rhizobium leguminosarum bv. viciae str. USDA 2434 bv. prokMSA_id:5358 U89827.1 Rhizobium leguminosarum bv. viciae str. USDA 2443 bv. prokMSA_id:5359 U89828.1 Rhizobium leguminosarum bv. viciae str. USDA 2449 bv. prokMSA_id:5360 U89829.1 Rhizobium leguminosarum bv. viciae str. USDA 2498 bv. prokMSA_id:5361 U89830.1 Rhizobium leguminosarum bv. viciae str. USDA 2501 bv. prokMSA_id:5362 AF041443.1 Rhizobium sp. 'ACCC 19667' str. ACCC 19667 'ACCC prokMSA_id:5363 U31074.1 Rhizobium leguminosarum bv. trifolii str. T24 bv. prokMSA_id:5366 U29388.1 Rhizobium leguminosarum prokMSA_id:18033 AF313906.1 Rhizobium sp. str. CIAT652 prokMSA_id:18988 AY039233.1 Rhizobium sp. str. NZN7 prokMSA_id:20185 AF417560.1 Rhizobium gallicum str. DASA12023 prokMSA_id:24023 AF313904.1 Rhizobium etli str. CIAT151 prokMSA_id:24692 AB069724.1 Rhizobium sp. str. AC100 prokMSA_id:26893 AF325772.1 Rhizobium sp. str. WSM749 prokMSA_id:29072 AF279266.1 Rhizobium sp. str. WSM1583 prokMSA_id:32366 AF313905.1 Rhizobium sp. str. CIAT613 prokMSA_id:38301 AF282924.1 Mesorhizobium sp. str. N36 prokMSA_id:41100 AF325773.1 Rhizobium sp. str. He-853 prokMSA_id:41445 AJ271902.1 Rhizobium sp. str. rob20 prokMSA_id:45894 AF417561.1 Rhizobium gallicum str. DASA12024 prokMSA_id:49093 AF417558.1 Rhizobium gallicum str. DASA12005 prokMSA_id:56641 AY161164.1 Rhizobium etli prokMSA_id:57882 AY141986.1 Rhizobium sp. str. SH1718alt prokMSA_id:57888 AY141980.1 Rhizobium sp. str. SH445 prokMSA_id:61021 AF533683.1 Rhizobium leguminosarum str. WSM1698 prokMSA_id:63514 AY117660.1 Rhizobium etli str. PRF126 prokMSA_id:63520 AY117630.1 Rhizobium etli str. PRF230 prokMSA_id:77281 AF260275.2 Rhizobium tropici str. PRF54 prokMSA_id:79676 AY221179.1 Rhizobium etli EBRI 27 prokMSA_id:80573 AY221175.1 Rhizobium etli EBRI 3 prokMSA_id:81128 AY210712.1 Rhizobium sp. str. Dz6-4 prokMSA_id:81330 AY210710.1 Rhizobium sp. str. Dz12 prokMSA_id:81359 AY196964.1 Rhizobium leguminosarum bv. trifolii str. ARPV02 bv. prokMSA_id:81533 AY210706.1 Rhizobium sp. str. Am4-1 prokMSA_id:81608 AY210708.1 Rhizobium sp. str. Db4-14 prokMSA_id:81629 AY210707.1 Rhizobium sp. str. Am4-4 prokMSA_id:81786 AY210714.1 Rhizobium sp. str. Dz8-2 prokMSA_id:82038 AY210705.1 Rhizobium sp. str. Ak3-1 prokMSA_id:82148 AY210715.1 Rhizobium sp. str. Gi7 prokMSA_id:82161 AY210704.1 Rhizobium sp. str. Ad2 prokMSA_id:82352 AY210711.1 Rhizobium sp. str. Dz6-14 prokMSA_id:86921 AF510384.1 Rhizobium sp. str. Trr-2 prokMSA_id:86928 AF511506.1 Rhizobium sp. str. Trp-1 prokMSA_id:87031 AF510631.1 Rhizobium sp. str. Trr-6 prokMSA_id:87112 AF510632.1 Rhizobium sp. str. Trr-8 prokMSA_id:87118 AF511499.1 Rhizobium sp. str. Trp-4 prokMSA_id:87165 AF511490.1 Rhizobium sp. str. Trp-2 prokMSA_id:87278 AF511501.1 Rhizobium sp. str. Trp-5 prokMSA_id:87341 AF511495.1 Rhizobium sp. str. Gls-2 prokMSA_id:87379 AF511505.1 Rhizobium sp. str. Crj-3 prokMSA_id:87461 AF511491.1 Rhizobium sp. str. Trp-3 prokMSA_id:87615 AF510626.1 Rhizobium sp. str. Pis-1 prokMSA_id:87755 AF510628.1 Rhizobium sp. str. Trr-4 prokMSA_id:87807 AF510379.1 Rhizobium sp. str. Trr-7 prokMSA_id:87852 AF510377.1 Rhizobium sp. str. Trp-6 prokMSA_id:88017 AF510630.1 Rhizobium sp. str. Trr-5 prokMSA_id:88041 AF510629.1 Rhizobium sp. str. Vif-1 prokMSA_id:91304 AY331577.1 Ochrobactrum sp. str. mp-3 prokMSA_id:91905 AY331581.1 Brucella sp. str. mp-7 prokMSA_id:100083 AY505132.1 Sinorhizobium sp. str. TB2-T-5 prokMSA_id:102630 AY500263.1 Rhizobium sp. str. ORS 1457 prokMSA_id:103459 AY576683.1 Ochrobactrum sp. DDV-1 prokMSA_id:105906 AY661463.1 Ochrobactrum sp. B1 prokMSA_id:112419 AY491061.1 Rhizobium leguminosarum str. ICMP 12687 prokMSA_id:112424 AY491062.1 Rhizobium leguminosarum str. ICMP 14642 prokMSA_id:112427 AY500265.1 Rhizobium sp. str. ORS 1462 prokMSA_id:112431 AY491060.1 Rhizobium leguminosarum str. ICMP 11727 prokMSA_id:112444 AY491059.1 Rhizobium leguminosarum str. ICMP 11542 2.43.1.11.8 Rhodobiaceae 9 seqs 2.43.1.11.8.1 sf_1 9 seqs 2.43.1.11.8.1.6760 OTU 1 seq prokMSA_id:39309 AF424276.1 clone MERTZ_2CM_305 2.43.1.11.8.1.6891 OTU 1 seq prokMSA_id:5104 AJ011919.1 Roseospirillum parvum str. 930I 2.43.1.11.8.1.7454 OTU 1 seq prokMSA_id:5066 D30792.1 "Rhodohalobium orientum" 2.43.1.11.8.1.7553 OTU 6 seqs prokMSA_id:5073 D30790.1 Rhodobium marinum prokMSA_id:5074 D30791.1 Rhodobium marinum prokMSA_id:55679 AF513478.1 Rhizobiaceae isolate str. PH34B prokMSA_id:63876 AB087720.1 Rhodopseudomonas julia str. DSM 11549 prokMSA_id:78313 AJ401216.1 Rhodobium sp. AR2106 prokMSA_id:105386 AY428572.1 Rhodopseudomonas julia str. DSM 11549 2.43.1.11.9 Unclassified 46 seqs 2.43.1.11.9.1 sf_1 46 seqs 2.43.1.11.9.1.6641 OTU 1 seq prokMSA_id:5250 AF159656.1 related to Rhizobiaceae group 2.43.1.11.9.1.6644 OTU 1 seq prokMSA_id:24325 AF424287.1 clone MERTZ_0CM_399 2.43.1.11.9.1.6672 OTU 1 seq prokMSA_id:45402 AY038922.1 Marine isolate str. SE83 2.43.1.11.9.1.6704 OTU 1 seq prokMSA_id:43818 AF424288.1 clone MERTZ_21CM_29 2.43.1.11.9.1.6726 OTU 1 seq prokMSA_id:74769 AY145557.1 dilution (10e-5) marine section Weser estuary isolate str. AP-20 2.43.1.11.9.1.6756 OTU 1 seq prokMSA_id:79124 AY187322.1 drinking-water biofilm clone csbio160325 2.43.1.11.9.1.6767 OTU 1 seq prokMSA_id:31950 AJ344203.1 winter Bugach pond clone 2.43.1.11.9.1.6775 OTU 1 seq prokMSA_id:5194 AJ223456.1 Rhizobiales isolate SS5 2.43.1.11.9.1.6789 OTU 5 seqs prokMSA_id:5205 D14255.1 Zoogloea ramigera prokMSA_id:5207 X74915.1 Zoogloea ramigera prokMSA_id:55816 AF502218.1 EBPR sludge lab scale clone HP1B02 prokMSA_id:59345 AF502219.1 EBPR sludge lab scale clone HP1B28 prokMSA_id:66898 AJ440750.1 Gram-negative DM 2 2.43.1.11.9.1.6836 OTU 1 seq prokMSA_id:63338 AF523872.1 forested wetland clone RCP1-19 2.43.1.11.9.1.6877 OTU 1 seq prokMSA_id:5257 AF142922.1 clone PENDANT-9 2.43.1.11.9.1.6893 OTU 1 seq prokMSA_id:5108 U62846.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB25 2.43.1.11.9.1.6899 OTU 1 seq prokMSA_id:79154 AB099999.1 inactive deep-sea hydrothermal vent chimneys clone IndB1-38 2.43.1.11.9.1.6938 OTU 1 seq prokMSA_id:20272 AF145870.1 Metal-contaminated soil clone K20-82 2.43.1.11.9.1.6957 OTU 1 seq prokMSA_id:47381 AF287025.1 molecular weight enrichment; coastal seawater dissolved organic matter enrichments clone EC-B2 2.43.1.11.9.1.6969 OTU 1 seq prokMSA_id:29743 AF145805.1 Metal-contaminated soil clone K20-01 2.43.1.11.9.1.6978 OTU 1 seq prokMSA_id:4613 AF159659.1 related to Rhodobium group 2.43.1.11.9.1.7012 OTU 2 seqs prokMSA_id:21263 AF424289.1 clone MERTZ_21CM_88 prokMSA_id:48953 AF424280.1 clone MERTZ_0CM_183 2.43.1.11.9.1.7039 OTU 1 seq prokMSA_id:68662 AJ439365.1 LIg-6 2.43.1.11.9.1.7060 OTU 1 seq prokMSA_id:76105 AJ519622.1 Uranium mill tailings soil clone Sh765B-TzT-3 2.43.1.11.9.1.7088 OTU 1 seq prokMSA_id:32879 AF424277.1 clone MERTZ_2CM_305a 2.43.1.11.9.1.7146 OTU 1 seq prokMSA_id:43652 U87509.1 2.43.1.11.9.1.7147 OTU 1 seq prokMSA_id:78811 AJ536868.1 uranium mining waste pile soil clone JG30a-KF-59 2.43.1.11.9.1.7169 OTU 1 seq prokMSA_id:48705 AF424269.1 clone MERTZ_2CM_19 2.43.1.11.9.1.7173 OTU 1 seq prokMSA_id:33878 AF445113.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc49 2.43.1.11.9.1.7193 OTU 1 seq prokMSA_id:23345 U58014.1 selected with Methylosinus specific probe 2.43.1.11.9.1.7209 OTU 1 seq prokMSA_id:49373 AF424291.1 clone MERTZ_21CM_114 2.43.1.11.9.1.7249 OTU 1 seq prokMSA_id:72411 Y15349.1 Rhizobium sp. PRLISY04 2.43.1.11.9.1.7295 OTU 1 seq prokMSA_id:64597 AF467376.1 clone 1557 2.43.1.11.9.1.7323 OTU 1 seq prokMSA_id:76556 AJ518780.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-141 2.43.1.11.9.1.7326 OTU 1 seq prokMSA_id:45223 AY038704.1 epilithon clone TAF-A108 2.43.1.11.9.1.7339 OTU 1 seq prokMSA_id:79109 AY187365.1 drinking-water biofilm clone csbio160171 2.43.1.11.9.1.7407 OTU 1 seq prokMSA_id:5190 AF159660.1 related to Rhodobium group 2.43.1.11.9.1.7512 OTU 2 seqs prokMSA_id:26653 AF424283.1 clone MERTZ_0CM_232 prokMSA_id:27640 AF424290.1 clone MERTZ_21CM_100 2.43.1.11.9.1.7540 OTU 2 seqs prokMSA_id:21543 AF424270.1 clone MERTZ_2CM_44 prokMSA_id:35444 AB077339.1 deep-sea sediment clone TYM--2 2.43.1.11.9.1.7586 OTU 1 seq prokMSA_id:5503 AF159658.1 related to 2.43.1.11.9.1.7603 OTU 3 seqs prokMSA_id:5407 AB008366.1 Liberibacter sp. str. Okinama Okinawa-7 prokMSA_id:41828 AB038369.1 Diaphorina citri symbiont prokMSA_id:80801 AY192576.1 Candidatus Liberibacter asiaticus 2.43.1.12 Rhodobacterales 652 seqs 2.43.1.12.1 Hyphomonadaceae 4 seqs 2.43.1.12.1.1 sf_1 4 seqs 2.43.1.12.1.1.7584 OTU 4 seqs prokMSA_id:5854 AJ227809.2 Maricaulis indicus str. MCS26 prokMSA_id:26948 AJ301667.1 Maricaulis virginensis str. VC 5 prokMSA_id:60393 AF513444.1 Hyphomonas group isolate str. LA49 prokMSA_id:72693 AY007678.1 Caulobacter sp. JP68 2.43.1.12.2 Rhodobacteraceae 637 seqs 2.43.1.12.2.1 sf_1 636 seqs 2.43.1.12.2.1.312 OTU 1 seq prokMSA_id:5789 D88522.1 Agrobacterium ferrugineum 2.43.1.12.2.1.6629 OTU 1 seq prokMSA_id:5658 AF170751.1 Roseobacter sp. str. QSSC9-8 2.43.1.12.2.1.6630 OTU 1 seq prokMSA_id:46143 AF473915.1 template extracted Diploria strigosa with BBD clone 128-19L proteobacterium 2.43.1.12.2.1.6632 OTU 1 seq prokMSA_id:43442 AJ421782.1 Hirschia baltica str. DSM 5838T 2.43.1.12.2.1.6647 OTU 1 seq prokMSA_id:40367 AF445717.1 travertine hot spring clone SM2C07 2.43.1.12.2.1.6652 OTU 1 seq prokMSA_id:45368 AF353235.1 marine clone Arctic96A-1 2.43.1.12.2.1.6661 OTU 3 seqs prokMSA_id:75332 AJ534207.1 Methylarcula sp. BIO-24 prokMSA_id:75890 AJ534206.1 Methylarcula sp. BIO-13 prokMSA_id:103282 AY536563.1 Methylarcula sp. str. WED1.2 2.43.1.12.2.1.6664 OTU 1 seq prokMSA_id:5706 U63548.1 Ophiopholis aculeata symbiont 2.43.1.12.2.1.6669 OTU 1 seq prokMSA_id:31561 AB074719.1 Japan:Lake Biwa isolate str. S-N(0)-14A 2.43.1.12.2.1.6675 OTU 5 seqs prokMSA_id:5823 D32245.1 Rhodovulum species prokMSA_id:5825 D16418.1 Rhodovulum adriaticum prokMSA_id:60395 AF513442.1 Rhodobacter group isolate str. LA38BS prokMSA_id:77962 AJ401206.1 Rhodovulum sp. AT2111 prokMSA_id:78290 AJ401207.1 Rhodovulum sp. AT2114 2.43.1.12.2.1.6679 OTU 1 seq prokMSA_id:80690 AF468375.1 Arctic sea ice ARK10226 2.43.1.12.2.1.6681 OTU 1 seq prokMSA_id:17078 AF234729.1 sludge clone A27 2.43.1.12.2.1.6682 OTU 3 seqs prokMSA_id:5756 AB018688.1 Paracoccus sp. str. MBIC3966 94-209 prokMSA_id:38672 AF461158.1 Paracoccus zeaxanthinifaciens str. ATCC 21588 prokMSA_id:41749 AF461159.1 Paracoccus zeaxanthinifaciens str. R-1506 2.43.1.12.2.1.6684 OTU 2 seqs prokMSA_id:30481 U84018.1 prokMSA_id:35714 U84035.1 2.43.1.12.2.1.6686 OTU 1 seq prokMSA_id:50030 AF259608.1 Mediterranean population clone 50 2.43.1.12.2.1.6691 OTU 2 seqs prokMSA_id:21303 AF253467.1 Y3F prokMSA_id:27170 AF388307.1 marine Y4I 2.43.1.12.2.1.6701 OTU 3 seqs prokMSA_id:35270 AF245632.1 Roseobacter clone NAC11-3 prokMSA_id:69570 AY145625.1 10e-6 dilution marine samples Weser estuary clone DC11-80-2 proteobacterium prokMSA_id:74007 AY145589.1 10e-6 dilution marine samples Weser estuary clone DC5-80-3 proteobacterium 2.43.1.12.2.1.6705 OTU 1 seq prokMSA_id:5702 AF159653.1 related to Rhodobacter group 2.43.1.12.2.1.6714 OTU 1 seq prokMSA_id:62503 AF513936.1 Rhodobacter group clone PH-B13 2.43.1.12.2.1.6723 OTU 1 seq prokMSA_id:5709 AF142891.1 clone EKHO-8 2.43.1.12.2.1.6728 OTU 1 seq prokMSA_id:46644 AJ296550.1 uranium mining mill tailing clone GR-WP33-45 2.43.1.12.2.1.6730 OTU 1 seq prokMSA_id:35565 AF234745.1 sludge clone A26 2.43.1.12.2.1.6733 OTU 1 seq prokMSA_id:5762 AF030436.1 Methylarcula terricola str. h1; VKM B-2159 2.43.1.12.2.1.6742 OTU 1 seq prokMSA_id:5863 AJ227807.1 Caulobacter sp. str. MCS23 2.43.1.12.2.1.6743 OTU 1 seq prokMSA_id:5864 AJ227813.1 Hyphomonas polymorpha str. DSM2665 (T) 2.43.1.12.2.1.6751 OTU 1 seq prokMSA_id:5711 AF142839.1 clone BURTON-19 2.43.1.12.2.1.6761 OTU 5 seqs prokMSA_id:17964 AJ294355.1 Roseobacter isolate 667-19 clone prokMSA_id:75072 AJ534240.1 Sulfitobacter sp. PIC-70 prokMSA_id:76222 AJ534242.1 Sulfitobacter sp. PIC-74 prokMSA_id:76561 AJ534241.1 Sulfitobacter sp. PIC-72 prokMSA_id:76775 AJ534239.1 Sulfitobacter sp. PIC-69 2.43.1.12.2.1.6764 OTU 1 seq prokMSA_id:5713 AF142827.1 clone BURTON-7 2.43.1.12.2.1.6769 OTU 1 seq prokMSA_id:5715 AF098491.2 Silicibacter pomeroyi 2.43.1.12.2.1.6771 OTU 1 seq prokMSA_id:79922 AB094838.1 subseafloor sediments Sea Okhotsk clone OHKB4.20 2.43.1.12.2.1.6772 OTU 4 seqs prokMSA_id:29287 AJ438157.1 Jannaschia helgolandensis str. Hel 10 prokMSA_id:75300 AJ534225.1 Jannaschia helgolandensis HEL-43 prokMSA_id:75353 AJ534224.1 Jannaschia helgolandensis str. Hel 26 HEL-26 prokMSA_id:79743 AY193260.1 marine tidal mat clone BTM13 2.43.1.12.2.1.6784 OTU 3 seqs prokMSA_id:81400 AY167257.1 Roseobacter sp. str. ANT9234 prokMSA_id:81559 AY167261.1 Roseobacter sp. str. ANT9274 prokMSA_id:82275 AY167259.1 Roseobacter sp. str. ANT9240 2.43.1.12.2.1.6786 OTU 1 seq prokMSA_id:50418 AF473932.1 template extracted Diploria strigosa with BBD clone 128-47L proteobacterium 2.43.1.12.2.1.6796 OTU 5 seqs prokMSA_id:29579 AF245630.1 Roseobacter clone NAC11-1 prokMSA_id:29665 AY038571.1 clone CD2AC12 prokMSA_id:40328 AY038469.1 clone CD2H3 prokMSA_id:43676 AF439417.1 prokMSA_id:45067 AF245614.1 Roseobacter clone NAC1-1 2.43.1.12.2.1.6797 OTU 1 seq prokMSA_id:5779 D32241.1 Paracoccus kocurii 2.43.1.12.2.1.6802 OTU 1 seq prokMSA_id:21918 AF328228.1 clone KS97 2.43.1.12.2.1.6805 OTU 1 seq prokMSA_id:33574 AB046591.1 unialgal raphidophyte Chattonella marina isolate str. Fl90-32 bacterium 2.43.1.12.2.1.6815 OTU 1 seq prokMSA_id:5780 D16421.1 Rhodobacter veltkampii 2.43.1.12.2.1.6816 OTU 1 seq prokMSA_id:5781 AF170736.1 Rhodobacter sp. str. QSSC1-20 2.43.1.12.2.1.6818 OTU 1 seq prokMSA_id:41605 AF425758.1 clone MERTZ_0CM_153 2.43.1.12.2.1.6820 OTU 1 seq prokMSA_id:5783 X78717.1 Iron-oxidizing phototroph str. SW2 2.43.1.12.2.1.6827 OTU 1 seq prokMSA_id:80289 AF468352.1 Arctic sea ice ARK10013 2.43.1.12.2.1.6838 OTU 1 seq prokMSA_id:5784 AJ224988.1 closest relative Rhodobacter spheroides clone GKS59 2.43.1.12.2.1.6842 OTU 1 seq prokMSA_id:5785 AJ001425.1 sp. clone 400-145 2.43.1.12.2.1.6848 OTU 1 seq prokMSA_id:27774 AF254107.1 hydrothermal vent strain str. NF18 2.43.1.12.2.1.6862 OTU 1 seq prokMSA_id:61254 AJ505786.1 coastal sediment clone 2.43.1.12.2.1.6864 OTU 2 seqs prokMSA_id:19627 AJ391195.1 Adriatic Sea isolate str. AS-34 prokMSA_id:105943 AY697903.1 Antarctica clone F3C48 2.43.1.12.2.1.6866 OTU 1 seq prokMSA_id:83098 AJ542657.1 Roseobacter sp. 4318-8/1 2.43.1.12.2.1.6870 OTU 1 seq prokMSA_id:71562 AY145582.1 10e-8 dilution brackish samples Weser estuary clone DC5-50-1 proteobacterium 2.43.1.12.2.1.6879 OTU 1 seq prokMSA_id:22858 AF384141.1 diseased sponge isolate str. NW4327 2.43.1.12.2.1.6880 OTU 1 seq prokMSA_id:5792 D85834.1 Rubrimonas cliftonensis str. OCh317 2.43.1.12.2.1.6882 OTU 1 seq prokMSA_id:5793 AF035433.1 Rhodobacter apigmentum 2.43.1.12.2.1.6883 OTU 6 seqs prokMSA_id:5716 AB026194.1 str. MBIC1876 027-5-2 prokMSA_id:5718 D88527.1 Ruegeria atlantica str. IAM14464 prokMSA_id:43019 AJ244780.1 Sepia officinalis symbiont prokMSA_id:46822 AJ244786.1 Sepia officinalis symbiont prokMSA_id:49437 AJ244791.1 Sepia officinalis symbiont prokMSA_id:51444 AJ244802.1 Sepia officinalis symbiont 2.43.1.12.2.1.6888 OTU 1 seq prokMSA_id:55371 AF254109.1 hydrothermal vent strain str. TB66 2.43.1.12.2.1.6889 OTU 1 seq prokMSA_id:20261 AF142960.1 clone TAYNAYA-14 2.43.1.12.2.1.6894 OTU 1 seq prokMSA_id:5853 AJ227808.2 Maricaulis parjimensis str. MCS 25 2.43.1.12.2.1.6903 OTU 1 seq prokMSA_id:46473 AF143829.1 hydrocarbon-degrading consortium clone 4-Org2-20 2.43.1.12.2.1.6923 OTU 6 seqs prokMSA_id:75643 AJ534211.1 Jannaschia sp. DFL-12 prokMSA_id:76596 AJ534220.1 Jannaschia sp. DFL-36 prokMSA_id:76848 AJ534216.1 Jannaschia sp. DFL-27 prokMSA_id:76961 AJ534217.1 Jannaschia sp. DFL-30 prokMSA_id:77178 AJ534221.1 Jannaschia sp. DFL-38 prokMSA_id:77237 AJ534213.1 Jannaschia sp. DFL-16 2.43.1.12.2.1.6932 OTU 1 seq prokMSA_id:31026 AF328162.1 clone KS7 2.43.1.12.2.1.6937 OTU 2 seqs prokMSA_id:19381 AF097818.2 sludge clone 49523 prokMSA_id:81430 AY192057.1 EBPR sludge clone P55-GM4R-t 2.43.1.12.2.1.6939 OTU 2 seqs prokMSA_id:18204 AF234758.1 sludge clone A10 prokMSA_id:49391 AF280854.1 bioreactor clone mle1-20 2.43.1.12.2.1.6949 OTU 1 seq prokMSA_id:32853 AJ428275.1 Paracoccus seriniphilus str. MBT-A4 2.43.1.12.2.1.6955 OTU 6 seqs prokMSA_id:61128 AF530134.1 isolate str. MGP-7 prokMSA_id:79810 AF468376.1 Arctic sea ice ARK10233 prokMSA_id:80429 AF468360.1 Arctic sea ice ARK10055 prokMSA_id:80486 AF468276.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-77 prokMSA_id:81959 AY167253.2 Roseobacter sp. str. ANT9082 prokMSA_id:82093 AY167321.1 Roseobacter sp. str. ANT9283 2.43.1.12.2.1.6960 OTU 1 seq prokMSA_id:75789 AF344288.1 hypersaline microbial mat; uses glycolate clone AHe6 2.43.1.12.2.1.6965 OTU 2 seqs prokMSA_id:5758 D32239.1 Paracoccus aminophilus prokMSA_id:24498 AY014176.1 Paracoccus aminophilus str. ATCC 49673 2.43.1.12.2.1.6979 OTU 3 seqs prokMSA_id:22427 AF234741.1 sludge clone A6 prokMSA_id:34114 AF234715.1 sludge clone H42 prokMSA_id:40921 AF234725.1 sludge clone S2 2.43.1.12.2.1.6980 OTU 26 seqs prokMSA_id:5632 AJ002565.1 Marine (isolate SRF3) clone prokMSA_id:5652 M59063.1 Roseobacter denitrificans prokMSA_id:5669 AJ002564.1 Marine (isolate SRF2) clone prokMSA_id:5714 D88526.1 Ruegeria atlantica prokMSA_id:33581 AF186700.1 Sulfitobacter sp. str. MA2824 prokMSA_id:47852 AF277511.1 polar sea ice clone SIC.8141 prokMSA_id:61109 AF530151.1 isolate str. MGP-80 prokMSA_id:68976 AY033321.1 seawater isolate str. R2A57 prokMSA_id:77756 AY171343.1 marine sediment clone s95 prokMSA_id:77996 AY172307.1 petri dish clone 38 prokMSA_id:80962 AF468354.1 Arctic sea ice ARK10021 prokMSA_id:93537 AJ582226.1 Loktanella vestfoldensis str. LMG 22003 prokMSA_id:94079 AJ582227.1 Loktanella vestfoldensis str. LMG 22006 prokMSA_id:99770 AY654831.1 Oculina mucus isolate 92 prokMSA_id:100252 AY654762.1 Oculina mucus isolate 107 prokMSA_id:102537 AY332176.1 oxic sediment layer German Wadden Sea October 1999 isolate str. GWS-SE-H250x prokMSA_id:103608 AY654808.1 Oculina mucus isolate 78 prokMSA_id:103691 AY682199.1 Loktanella rosea str. Fg36 prokMSA_id:103819 AB159204.1 natural gas brine water isolate str. N213-3 prokMSA_id:104475 AY654754.1 Oculina mucus isolate 116 prokMSA_id:105613 AY646161.1 Roseobacter sp. str. JL-129 prokMSA_id:105766 AY646162.1 Roseobacter sp. str. JL-131 prokMSA_id:105784 AY654775.1 Oculina mucus isolate 32 prokMSA_id:108638 AY745856.1 Roseobacter sp. JL-132 str. ECS-JL-132 prokMSA_id:112728 AY922214.1 orange microbial mat on grey whale carcass Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131693 prokMSA_id:114148 AY922221.1 orange microbial mat on grey whale carcass Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131717 2.43.1.12.2.1.6982 OTU 1 seq prokMSA_id:81023 AY193273.1 marine tidal mat clone BTM32 2.43.1.12.2.1.6991 OTU 48 seqs prokMSA_id:5788 D70846.1 Rhodobacter azotoformans str. KA25 prokMSA_id:5790 D70847.1 Rhodobacter azotoformans str. SA16 prokMSA_id:5791 X53853.1 Rhodobacter sphaeroides prokMSA_id:5795 D16425.1 Rhodobacter sphaeroides prokMSA_id:5796 X53855.1 Rhodobacter sphaeroides prokMSA_id:5797 D16424.1 Rhodobacter sphaeroides prokMSA_id:5798 X53854.1 Rhodobacter sphaeroides prokMSA_id:5800 D16429.1 Rhodobacter blastica prokMSA_id:5802 AB017799.1 Rhodobacter sp. str. TCRI 14 prokMSA_id:5815 D16427.1 Rhodobacter capsulatus prokMSA_id:5816 AB017796.1 Rhodobacter sp. str. TCRI 3 prokMSA_id:5817 AB017797.1 Rhodobacter sp. str. TCRI 5 prokMSA_id:5818 AB017798.1 Rhodobacter sp. str. TCRI 2 prokMSA_id:5820 D16428.1 Rhodobacter capsulatus prokMSA_id:5832 D16423.1 Rhodovulum sulfidophilum prokMSA_id:18225 AB074724.1 Japan:Lake Biwa isolate str. S-N(0)-25B prokMSA_id:22866 AF468821.2 Rhodobacter sphaeroides KD131 = KCTC 12085 prokMSA_id:56072 AF515782.1 Rhodobacter sp. str. PS9 prokMSA_id:60360 AF465833.1 Albidovulum inexpectatum str. FRR-10T prokMSA_id:60758 AY128090.1 phototrophic sludge clone PSB-M-1 prokMSA_id:61252 AJ505785.1 Paracoccus aminovorans GP43 prokMSA_id:62339 AB079635.1 Rhodovulum strictum str. JCM 9221 prokMSA_id:64867 AJ412687.1 Paracoccus sp. str. L prokMSA_id:67718 AB082379.1 Rhodobacter sp. NMR15 prokMSA_id:67721 AB077986.1 Rhodobacter gluconicum prokMSA_id:76833 AY159129.1 microbial biofilm with membrane-based water purification process clone MF_clone_11 prokMSA_id:76860 AY159141.1 microbial biofilm with membrane-based water purification process clone MF_clone_54 prokMSA_id:78323 AJ401214.1 Rhodovulum sp. AR2002 prokMSA_id:83643 AY244771.1 Rhodobacter sp. str. 2002-65602 prokMSA_id:88947 AY312056.1 Paracoccus sp. Ol18 prokMSA_id:89581 AY325770.1 Paracoccus sp. str. Ophe1 1018 prokMSA_id:91577 AY345456.1 Lake Kauhako water isolate str. K91 prokMSA_id:93958 AJ582185.1 soil collected near uranium mill tailings Gittersee/Coschuetz clone Gitt-GS-149 prokMSA_id:98295 AB122032.1 Rhodobacter sp. str. Jip03 prokMSA_id:102583 AY212706.1 water 10 m downstream manure clone 257ds10 prokMSA_id:104167 AB187584.1 Paracoccus koreensis str. Ch05 prokMSA_id:104516 AY439188.1 soil clone MeCl 22 prokMSA_id:105465 AY646160.1 Paracoccus sp. str. JL-64 prokMSA_id:106521 AY573045.1 Paracoccus sp. str. ARCTIC-P17 prokMSA_id:106674 AY212710.1 water 10 m downstream manure clone 260ds10 prokMSA_id:107767 AJ580352.1 Paracoccus sp. BOG6 prokMSA_id:108091 AJ786815.1 nitrifying inoculum isolate R-23041 prokMSA_id:108309 AY770941.1 water injection well Dagang oilfield clone W1 prokMSA_id:108315 AY770948.1 water injection well Dagang oilfield clone W8 prokMSA_id:108539 AY701453.1 dinoflagellate symbiont clone GCHU11_A prokMSA_id:109691 AB196355.1 Rhodobacter sphaeroides str. LW-BR prokMSA_id:109808 AB196354.1 Rhodobacter sphaeroides str. SA38 prokMSA_id:114095 AY914074.1 Rhodobacter sp. R-8 2.43.1.12.2.1.6999 OTU 22 seqs prokMSA_id:5648 AF100168.2 cf. Roseobacter sp. with larval haddock clone proteobacterium prokMSA_id:80702 AF468378.1 Arctic sea ice ARK10278 prokMSA_id:81324 AY167322.1 Sulfitobacter sp. str. ANT9115 prokMSA_id:81861 AY167254.1 Roseobacter sp. ANT909 str. ANT9093 prokMSA_id:82006 AY165563.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-133 sea prokMSA_id:82225 AY167263.1 Psychromonas sp. str. ANT9282b prokMSA_id:99790 AY697874.1 Antarctica clone F1C98 prokMSA_id:104731 AY697883.1 Antarctica clone F2C43 prokMSA_id:105338 AY697887.1 Antarctica clone F2C95 prokMSA_id:105489 AY697888.1 Antarctica clone F2C98 prokMSA_id:105793 AY697902.1 Antarctica clone F3C44 prokMSA_id:105944 AY644707.1 Antarctica clone F3C24 prokMSA_id:107277 AY697924.1 Antarctica clone F4C85 prokMSA_id:109049 AY794096.1 soil clone F2C08a prokMSA_id:109093 AY794143.1 soil clone F2C77 prokMSA_id:109094 AY794144.1 soil clone F2C78 prokMSA_id:109096 AY794146.1 soil clone F2C81 prokMSA_id:109097 AY794148.1 soil clone F2C97 prokMSA_id:109098 AY794150.1 soil clone F3C01a prokMSA_id:109103 AY794157.1 soil clone F3C24 prokMSA_id:109108 AY794165.1 soil clone F3C59 prokMSA_id:113795 AY936189.1 Sulfitobacter sp. clone F2C100 2.43.1.12.2.1.7008 OTU 1 seq prokMSA_id:86027 AY256516.1 Paracoccus aminovorans dPAO9 2.43.1.12.2.1.7021 OTU 1 seq prokMSA_id:21183 D86605.1 Rhodobacter sp. str. NKPB030619 2.43.1.12.2.1.7026 OTU 10 seqs prokMSA_id:5654 Y13244.1 Roseobacter gallaeciensis str. BS107T prokMSA_id:5657 AF022392.1 was Accessory Nidamental Gland squid Loligo pealei February 1997 offshore at Woods Hole immature female squid. Strain is most closely related to Roseobacter algocolus ( ). isolate str. 303 str. prokMSA_id:16469 X86467.1 Roseobacter sp. str. JLN-A020 prokMSA_id:29620 AF365993.1 marine str. BBAT2 prokMSA_id:40286 AJ296158.1 Spain:Galicia isolate str. PP-154 prokMSA_id:41631 AY007684.1 marine isolate JP88.1 prokMSA_id:44513 AJ391174.1 Adriatic Sea isolate str. AS-11 prokMSA_id:45273 AY005463.1 Leisingera methylohalidivorans str. MB2 prokMSA_id:76304 AJ294335.1 HY-103 prokMSA_id:83687 AY177712.1 Rhodobacteraceae T5 2.43.1.12.2.1.7032 OTU 2 seqs prokMSA_id:77913 AJ489269.1 food Echinamoeba thermarum clone prokMSA_id:78270 AJ505840.1 -col-R2A-4 2.43.1.12.2.1.7033 OTU 1 seq prokMSA_id:62509 AF513928.1 Rhodobacter group clone LA1-B32N 2.43.1.12.2.1.7040 OTU 14 seqs prokMSA_id:5766 D32238.1 Paracoccus alcaliphilus prokMSA_id:5769 AB025188.1 Paracoccus sp. str. MBIC4017 HI3 prokMSA_id:5770 AB025189.1 Paracoccus sp. str. MBIC4018 HI7 prokMSA_id:5771 AF139992.1 Paracoccus marcusii str. ML-003 prokMSA_id:38102 AY014177.1 Paracoccus alcaliphilus str. ATCC 51199 prokMSA_id:61950 AJ244715.1 France:Nice isolate str. V4.BP.10 = MM_2346 V4.BP.10 prokMSA_id:74886 AJ534231.1 Methylarcula sp. HEL-8 prokMSA_id:76690 AJ532681.1 uranium mill tailings clone Gitt-KF-3 prokMSA_id:78216 AB098589.1 Paracoccus sp. str. TUT1021 prokMSA_id:80137 AF468351.1 Arctic sea ice ARK10006 prokMSA_id:99928 AY559422.1 hot spring water clone LS15 prokMSA_id:101368 AJ313424.1 Paracoccus sp. str. 88/2-4 seawater particle prokMSA_id:103780 AJ619068.1 Brewery bottling plant clone MTAF47 prokMSA_id:104666 AY515424.1 Paracoccus sp. str. GWS-BW-H72M 2.43.1.12.2.1.7045 OTU 2 seqs prokMSA_id:5692 AF098492.1 Roseobacter sp. str. DSS-1 prokMSA_id:42922 AJ293823.1 Arctic seawater isolate str. R7967 2.43.1.12.2.1.7046 OTU 3 seqs prokMSA_id:20502 AF359535.1 Alexandrium tamarense NEPCC 407 prokMSA_id:28150 AJ294353.1 Roseobacter isolate 667-2 clone prokMSA_id:29429 AY007679.2 marine isolate JP7.1 2.43.1.12.2.1.7047 OTU 3 seqs prokMSA_id:5804 U88041.1 Amaricoccus kaplicensis prokMSA_id:5805 Y09609.1 Tetracoccus cechii prokMSA_id:5806 Y09610.1 Tetracoccus cechii 2.43.1.12.2.1.7049 OTU 1 seq prokMSA_id:70088 AF034935.1 was obtained Accessory Nidamental Gland squid Loligo pealei July 1996 (mature female Marine Resources Center MBL). This clone similar 1995 4b D44 near-complete clones 1a 1c 1g represent stable frequen 2.43.1.12.2.1.7050 OTU 2 seqs prokMSA_id:61885 AF449224.1 Riftia pachyptila's tube clone R103-B9 prokMSA_id:61886 AF449223.1 Riftia pachyptila's tube clone R103-B28 2.43.1.12.2.1.7054 OTU 2 seqs prokMSA_id:5655 AF098495.1 Roseovarius nubinhibens str. ISM prokMSA_id:83398 AY177714.1 Rhodobacteraceae T11 2.43.1.12.2.1.7061 OTU 1 seq prokMSA_id:5667 AF159650.1 related to Rhodobacter group 2.43.1.12.2.1.7062 OTU 1 seq prokMSA_id:5668 AF159652.1 related to Rhodobacter group 2.43.1.12.2.1.7072 OTU 2 seqs prokMSA_id:81992 AY167262.1 Roseobacter sp. str. ANT9276a prokMSA_id:82344 AY167260.1 Roseobacter sp. str. ANT9270 2.43.1.12.2.1.7073 OTU 3 seqs prokMSA_id:5861 AF159649.1 related to Hyphomonas group prokMSA_id:5873 U41088.1 with seagrass Halophila stipulacea clone HstpL3 prokMSA_id:5874 U41091.1 with seagrass Halophila stipulacea clone HstpL6 2.43.1.12.2.1.7079 OTU 1 seq prokMSA_id:5676 AF142914.1 clone ORGANIC-12 2.43.1.12.2.1.7082 OTU 1 seq prokMSA_id:5677 AF142913.1 clone ORGANIC-11 2.43.1.12.2.1.7084 OTU 15 seqs prokMSA_id:5859 AF082797.1 Hyphomonas oceanitis str. SCH-89 prokMSA_id:5870 AF082795.1 Hyphomonas rosenbergii str. VP-6 prokMSA_id:5871 AF082796.1 Hyphomonas polymorpha str. Pr-727 prokMSA_id:5876 AF082794.1 Hyphomonas hirschiana str. VP-5 prokMSA_id:5877 AF082798.1 Hyphomonas neptunium prokMSA_id:45671 AF359546.1 Scrippsiella trochoidea NEPCC 15 prokMSA_id:83503 AJ557842.1 seawater prokMSA_id:84176 AJ557862.1 seawater prokMSA_id:85403 AJ557859.1 seawater prokMSA_id:85490 AJ557857.1 seawater prokMSA_id:86059 AJ557872.1 seawater prokMSA_id:86459 AJ557850.1 seawater prokMSA_id:101375 AY690712.1 Hyphomonas sp. str. MK02 prokMSA_id:101881 AY690715.1 Hyphomonas sp. str. MK06 prokMSA_id:102036 AY690716.1 Hyphomonas sp. str. MK08 2.43.1.12.2.1.7085 OTU 1 seq prokMSA_id:5719 U77644.1 Silicibacter lacuscaerulensis str. ITI-1157 2.43.1.12.2.1.7093 OTU 1 seq prokMSA_id:68668 AJ439363.1 LTs-4 2.43.1.12.2.1.7098 OTU 1 seq prokMSA_id:5678 AF142898.1 clone EKHO-15 2.43.1.12.2.1.7099 OTU 1 seq prokMSA_id:5679 D85831.1 Roseivivax halotolerans str. OCh 210T 2.43.1.12.2.1.7111 OTU 1 seq prokMSA_id:33738 AF188164.1 Pfiesteria piscicida and directly Pfiesteria-like dinoflagellate CCMP 1827 clone MC-1 2.43.1.12.2.1.7125 OTU 4 seqs prokMSA_id:5767 Y12703.1 Paracoccus marcusii prokMSA_id:5768 AB006899.1 Paracoccus carotinifaciens str. E-396 prokMSA_id:5772 AB008114.1 Paracoccus sp. str. MBIC1143 N81106 prokMSA_id:61839 AF529328.1 PCE-contaminated site clone CLi24 2.43.1.12.2.1.7130 OTU 2 seqs prokMSA_id:59349 AF502217.1 EBPR sludge lab scale clone HP1B64 prokMSA_id:66953 AJ440751.1 Gram-negative MM 1 2.43.1.12.2.1.7140 OTU 7 seqs prokMSA_id:76234 AJ534223.1 Methylarcula sp. DT-12 prokMSA_id:80016 AF468225.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-100 prokMSA_id:80857 AF468242.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-62 prokMSA_id:80873 AF468226.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-28 prokMSA_id:84473 AJ440997.1 Loktanella salsilacus str. R-8904 prokMSA_id:93357 AJ582229.1 Loktanella salsilacus str. LMG 22002 prokMSA_id:94029 AJ582228.1 Loktanella salsilacus str. LMG 22000 2.43.1.12.2.1.7149 OTU 2 seqs prokMSA_id:59350 AF502215.1 EBPR sludge lab scale clone HP1B71 prokMSA_id:59351 AF502214.1 EBPR sludge lab scale clone HP1A30 2.43.1.12.2.1.7158 OTU 1 seq prokMSA_id:5691 U85840.1 Octadecabacter sp. str. IC141 2.43.1.12.2.1.7160 OTU 1 seq prokMSA_id:5694 AF142900.1 clone EKHO-18 2.43.1.12.2.1.7162 OTU 1 seq prokMSA_id:5695 AF142851.1 clone BURTON-33 2.43.1.12.2.1.7172 OTU 1 seq prokMSA_id:66503 AY100584.1 clone cvf74058 2.43.1.12.2.1.7178 OTU 1 seq prokMSA_id:5801 AF159655.1 related to 2.43.1.12.2.1.7189 OTU 1 seq prokMSA_id:33017 U84017.1 2.43.1.12.2.1.7192 OTU 1 seq prokMSA_id:5808 U88044.1 Amaricoccus tamworthensis 2.43.1.12.2.1.7211 OTU 6 seqs prokMSA_id:5809 AB013259.1 deep sea sediment clone NKB7 prokMSA_id:5810 AJ240997.1 Norway:(Svalbard)Hornsund clone Sva0758 prokMSA_id:16977 AF424267.1 clone MERTZ_2CM_12 prokMSA_id:42942 AB077340.1 deep-sea sediment clone TYM--3 prokMSA_id:77142 AY164339.1 hypersaline anoxic basin; brine interface L'Atalante Mediterranean Sea clone ALIB-14 prokMSA_id:83623 AY226210.1 brine water L'Atalante Mediterranean Sea clone ABBB-43 2.43.1.12.2.1.7214 OTU 1 seq prokMSA_id:5726 M63810.1 marine clone SAR83 2.43.1.12.2.1.7224 OTU 1 seq prokMSA_id:28284 AF254103.1 thiosulfate-oxidizing north atlantic continental slope sediments at 1500 m depth isolate str. EI2 EI2 2.43.1.12.2.1.723 OTU 2 seqs prokMSA_id:20873 U63934.1 Rhodobacter sp. BAL2 prokMSA_id:74644 U63949.1 Rhodobacter sp. BAL27 2.43.1.12.2.1.7232 OTU 3 seqs prokMSA_id:5776 Y07705.1 Paracoccus solventivorans str. DSM 6637 prokMSA_id:5777 Y13826.1 Paracoccus solventivorans str. A686/1 prokMSA_id:47316 AY014175.1 Paracoccus solventivorans str. ATCC 700252 2.43.1.12.2.1.7233 OTU 1 seq prokMSA_id:26688 Y15348.1 Roseobacter sp. PRLISY03 2.43.1.12.2.1.7237 OTU 1 seq prokMSA_id:58379 AF368183.1 non-EBPR sludge clone SBRT155 2.43.1.12.2.1.7241 OTU 12 seqs prokMSA_id:5841 AJ007807.1 Maricaulis maris str. ACM 5106 (T) prokMSA_id:5842 M83807.1 Caulobacter species prokMSA_id:5845 AJ007804.1 Maricaulis maris str. ACM 5104 (T) prokMSA_id:5848 AB008849.1 Maricaulis maris str. NCIMB2022 prokMSA_id:5849 AB008850.1 Maricaulis maris str. NCIMB2209 prokMSA_id:5851 AJ227805.1 Maricaulis sp. str. MCS11 prokMSA_id:5855 AJ227810.1 Maricaulis sp. str. MCS28 prokMSA_id:27292 AJ301666.1 Maricaulis sp. str. MCS31 prokMSA_id:32951 AJ301665.1 Maricaulis sp. str. MCS30 prokMSA_id:33484 AJ227803.1 Maricaulis maris str. ATCC 15269 prokMSA_id:49200 AJ227802.1 Maricaulis maris str. ATCC 15268 (T) prokMSA_id:49396 AJ301664.1 Maricaulis sp. str. MCS10 2.43.1.12.2.1.7246 OTU 1 seq prokMSA_id:54358 AF424286.1 clone MERTZ_0CM_310 2.43.1.12.2.1.7262 OTU 16 seqs prokMSA_id:5731 D32243.1 Paracoccus versutus prokMSA_id:5732 D32244.1 Paracoccus versutus prokMSA_id:5735 X69159.1 Paracoccus denitrificans prokMSA_id:5742 Y17511.1 Paracoccus denitrificans str. JCM6892 prokMSA_id:5743 Y17512.1 Paracoccus denitrificans str. IAM12479 prokMSA_id:5744 U58015.1 Paracoccus sp. KS1 prokMSA_id:5745 U58016.1 Paracoccus sp. KS2 prokMSA_id:5746 U58017.1 Paracoccus sp. KL1 prokMSA_id:5754 AJ012067.1 Paracoccus sp. B8B1 prokMSA_id:5755 AJ012068.1 Paracoccus sp. B8B2 prokMSA_id:21865 AY014174.1 Paracoccus versutus str. ATCC 25364 prokMSA_id:34219 AJ294414.1 Paracoccus thiophilus str. AS001 prokMSA_id:34943 AJ288159.1 Paracoccus denitrificans str. DSM 2944 prokMSA_id:47659 AF229874.1 Paracoccus sp. str. 4FB8 prokMSA_id:75763 AY157621.1 Paracoccus denitrificans NKNIS prokMSA_id:77660 AB098590.1 Paracoccus pantotrophus str. TUT1022 2.43.1.12.2.1.7263 OTU 1 seq prokMSA_id:81687 AY165567.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-43 2.43.1.12.2.1.7266 OTU 1 seq prokMSA_id:5736 AF142896.1 clone EKHO-13 2.43.1.12.2.1.7267 OTU 1 seq prokMSA_id:36124 AF424292.1 clone MERTZ_21CM_146 2.43.1.12.2.1.7268 OTU 1 seq prokMSA_id:5737 AF030437.1 Methylarcula terricola str. h37; VKM B-2160 2.43.1.12.2.1.7270 OTU 1 seq prokMSA_id:54491 AF190211.1 directly Pfiesteria-complex dinoflagellate CCMP 1829 clone RSHD3E4 2.43.1.12.2.1.7272 OTU 1 seq prokMSA_id:45540 AF259607.1 Mediterranean population clone 39 2.43.1.12.2.1.7274 OTU 1 seq prokMSA_id:5761 D32240.1 Paracoccus aminovorans 2.43.1.12.2.1.7276 OTU 1 seq prokMSA_id:5765 AB012914.1 Paracoccus sp. str. MBIC3345 Y4 2.43.1.12.2.1.7277 OTU 2 seqs prokMSA_id:5649 AF076897.1 d isolate western Sargasso Sea clone C prokMSA_id:5650 AF076898.1 d isolate western Sargasso Sea clone D 2.43.1.12.2.1.7279 OTU 1 seq prokMSA_id:41049 AF417896.1 antarctic soil clone bh3.3 2.43.1.12.2.1.7282 OTU 3 seqs prokMSA_id:5683 Y11552.1 Antarctobacter heliothermus str. EL-219 prokMSA_id:50247 AJ294356.1 Antarctobacter sp. str. 667-12 prokMSA_id:73266 AF359538.1 Alexandrium tamarense PCC 173a 2.43.1.12.2.1.7288 OTU 4 seqs prokMSA_id:38545 Z88567.2 HNS27# HpaNS1-3 prokMSA_id:47941 Z88578.2 HOS35# HpaBS prokMSA_id:73475 Z88569.2 HNSM50 prokMSA_id:96829 Y14150.1 Rhodobacter veldkampii ISR010 2.43.1.12.2.1.7293 OTU 1 seq prokMSA_id:74722 AJ133762.1 Romania:Black Sea isolate str. TH1 2.43.1.12.2.1.7301 OTU 1 seq prokMSA_id:5703 AF098493.1 Roseobacter sp. str. DSS-8 2.43.1.12.2.1.7308 OTU 1 seq prokMSA_id:59348 AF502216.1 EBPR sludge lab scale clone HP1B39 2.43.1.12.2.1.7311 OTU 1 seq prokMSA_id:48018 AB077341.1 deep-sea sediment clone TYM--4 2.43.1.12.2.1.7325 OTU 1 seq prokMSA_id:5778 Y13827.1 Paracoccus alkenifer str. A901/1 2.43.1.12.2.1.7329 OTU 1 seq prokMSA_id:5662 AF124521.1 Ruegeria atlantica str. WNA2 2.43.1.12.2.1.7331 OTU 1 seq prokMSA_id:31713 AF348714.1 clone MPD-20 2.43.1.12.2.1.7341 OTU 1 seq prokMSA_id:62332 AB079682.1 Rhodovulum sp. CP-10 2.43.1.12.2.1.7345 OTU 5 seqs prokMSA_id:5835 U55277.1 Rhodovulum sulfidophilum prokMSA_id:5836 D16430.1 Rhodovulum sulfidophilum prokMSA_id:5838 D32246.1 Rhodovulum species prokMSA_id:5840 D16420.1 Rhodobacter species prokMSA_id:60362 AF513477.1 Rhodobacter group isolate str. PH33 2.43.1.12.2.1.7346 OTU 1 seq prokMSA_id:52539 AF424268.1 clone MERTZ_2CM_16 2.43.1.12.2.1.7350 OTU 2 seqs prokMSA_id:42048 AF254108.1 hydrothermal vent strain str. AG33 prokMSA_id:49056 AB041272.1 clone ECS2 2.43.1.12.2.1.7351 OTU 1 seq prokMSA_id:5753 AF140003.1 isolate str. ML-168a 2.43.1.12.2.1.7354 OTU 1 seq prokMSA_id:22037 Z88582.2 HRV4# HpaAS2 2.43.1.12.2.1.7358 OTU 1 seq prokMSA_id:62868 AF452106.1 Rhodobacter massiliensis str. Framboise 2.43.1.12.2.1.7362 OTU 8 seqs prokMSA_id:22206 AY014173.1 Paracoccus yeei str. G1212 prokMSA_id:23110 AY014168.1 Paracoccus yeei str. G4878 prokMSA_id:26594 AY014172.1 Paracoccus yeei str. G9205 prokMSA_id:28217 AY014169.1 Paracoccus yeei str. G6446 prokMSA_id:33902 AY014178.1 Paracoccus yeei str. H13 prokMSA_id:44012 AY014170.1 Paracoccus yeei str. G6155 prokMSA_id:46743 AY014179.1 Paracoccus yeei str. G3060 prokMSA_id:52386 AY014171.1 Paracoccus yeei str. G1968 2.43.1.12.2.1.7363 OTU 1 seq prokMSA_id:49670 AF328167.1 clone KS14 2.43.1.12.2.1.7364 OTU 8 seqs prokMSA_id:5640 AF098490.1 Sulfitobacter sp. str. DSS-2 prokMSA_id:5642 U87407.1 marine Sargasso Sea clone S34 prokMSA_id:19696 AJ278782.1 Antarctic seawater isolate str. R7706 prokMSA_id:29924 Y16425.2 Sulfitobacter brevis str. Ekho Lake-162 prokMSA_id:30176 AF254101.1 thiosulfate-oxidizing north atlantic abyssal sediments at 4500 m depth isolate str. AIII3 AIII3 prokMSA_id:75228 AJ534237.1 Sulfitobacter sp. LM-16 prokMSA_id:76761 AJ532580.1 Sulfitobacter sp. BIO-7 prokMSA_id:85401 AJ542654.1 Sulfitobacter pontiacus 4301-10/3 2.43.1.12.2.1.7373 OTU 1 seq prokMSA_id:56159 AB079681.1 Rhodobacter sp. AP-10 2.43.1.12.2.1.7375 OTU 2 seqs prokMSA_id:5670 X78313.1 Roseobacter algicola prokMSA_id:5671 X78314.1 Roseobacter algicola 2.43.1.12.2.1.7383 OTU 4 seqs prokMSA_id:17447 AF305498.1 Roseobacter sp. str. KT0202a prokMSA_id:36728 AJ391182.1 Adriatic Sea isolate str. AS-21 prokMSA_id:56667 AY145564.1 dilution (10e-6) marine section Weser estuary isolate str. AP-27 AP-27 prokMSA_id:84036 AJ557871.1 seawater 2.43.1.12.2.1.7386 OTU 1 seq prokMSA_id:25389 AF186701.1 Pfiesteria-complex dinoflagellate s (CCMP1828 and CCMP1829) isolate str. MC-4 2.43.1.12.2.1.7397 OTU 2 seqs prokMSA_id:5850 AJ227804.1 Maricaulis washingtonensis str. MCS06 prokMSA_id:5852 AJ227806.1 Maricaulis salignorans str. MCS 18 2.43.1.12.2.1.7405 OTU 1 seq prokMSA_id:79185 AB100001.1 inactive deep-sea hydrothermal vent chimneys clone IndB1-58 2.43.1.12.2.1.7420 OTU 1 seq prokMSA_id:26524 AJ294415.1 Paracoccus alcaliphilus str. KTC002 2.43.1.12.2.1.7429 OTU 4 seqs prokMSA_id:26995 AJ295988.1 Ruegeria aff. gelatinovorans str. ch611 prokMSA_id:33660 Y15339.1 Roseobacter sp. PRLIST02 prokMSA_id:33766 AJ294352.1 Roseobacter isolate 253-16 clone prokMSA_id:63182 AY117767.1 isolate DGGE band -9 clone 2.43.1.12.2.1.7432 OTU 10 seqs prokMSA_id:41244 AF245635.1 Roseobacter clone NAC11-7 prokMSA_id:92383 AY354837.1 coastal seawater during phytoplankton bloom clone PLY-P2-54 prokMSA_id:92494 AY354832.1 coastal seawater during phytoplankton bloom clone PLY-P2-3 prokMSA_id:92539 AY354831.1 coastal seawater during phytoplankton bloom clone PLY-P2-1 prokMSA_id:93014 AY354836.1 coastal seawater during phytoplankton bloom clone PLY-P2-45 prokMSA_id:106483 AY627365.1 marine clone AY627365 prokMSA_id:106880 AY697909.1 Antarctica clone F4C03 prokMSA_id:106971 AY697922.1 Antarctica clone F4C74 prokMSA_id:109125 AY794179.1 soil clone F3C99 prokMSA_id:113353 AY936200.1 Roseobacter sp. clone F4C01 2.43.1.12.2.1.7433 OTU 35 seqs prokMSA_id:5631 Y17387.1 Sulfitobacter mediterraneus CH-B427 prokMSA_id:5644 X78312.1 Roseobacter litoralis prokMSA_id:5651 M96746.1 Roseobacter denitrificans prokMSA_id:5653 L01784.1 Roseobacter denitrificans prokMSA_id:5708 AF142961.1 clone TAYNAYA-15 prokMSA_id:18019 AF259605.1 Mediterranean population clone 9 prokMSA_id:21484 AF277525.1 polar sea ice clone SIC.10342 prokMSA_id:26162 AF277512.1 polar sea ice clone SIC.8142 prokMSA_id:28230 AJ293822.1 Antarctic seawater isolate str. R7371 prokMSA_id:32299 Y16427.2 Staleya guttiformis str. Ekho Lake-38 prokMSA_id:35200 AF359537.1 Scrippsiella trochoidea NEPCC 15 prokMSA_id:46595 AJ294354.1 Roseobacter isolate 667-4 clone prokMSA_id:48599 AJ278783.1 Arctic seawater isolate str. R7091 prokMSA_id:52404 AF359532.1 Alexandrium tamarense PCC 173a prokMSA_id:74900 AJ534230.1 Sulfitobacter sp. HEL-78 prokMSA_id:75085 AJ534234.1 Staleya sp. LM-9 prokMSA_id:75251 AJ534235.1 Staleya sp. LM-10 prokMSA_id:75623 AJ534233.1 Staleya sp. LM-7 prokMSA_id:75812 AJ534214.1 Sulfitobacter sp. DFL-23 prokMSA_id:76030 AJ534243.1 Sulfitobacter sp. PIC-76 prokMSA_id:76156 AJ534228.1 Sulfitobacter sp. HEL-76 prokMSA_id:76632 AJ534210.1 Sulfitobacter sp. DFL-10 prokMSA_id:76795 AJ534226.1 Sulfitobacter sp. HEL-45 prokMSA_id:76942 AJ534209.1 Sulfitobacter sp. BIO-205 prokMSA_id:77822 AY172273.1 petri dish clone 311 prokMSA_id:78686 AY180102.1 Sulfitobacter dubius str. KMM 3554T prokMSA_id:78878 AY180103.1 Sulfitobacter delicatus str. KMM 3584T prokMSA_id:79547 AF505722.1 Boston Harbor surface water isolate str. UMB3C UMB3C prokMSA_id:83854 AJ550939.1 Oceanibulbus indolifex str. Hel 45 prokMSA_id:85267 AJ542658.1 Sulfitobacter sp. 4318-8/2 prokMSA_id:103418 AY682197.1 Sulfitobacter sp. str. KMM 3457 prokMSA_id:103722 AY548765.1 Sulfitobacter sp. str. PM03 prokMSA_id:104041 AY515420.1 Sulfitobacter sp. str. GWS-BW-H59M prokMSA_id:113396 AY902204.1 coastal biofilm isolate str. B9 prokMSA_id:113785 AJ877265.1 coastal sediment isolate str. DX5-10 2.43.1.12.2.1.7453 OTU 1 seq prokMSA_id:75731 AJ534205.1 Sulfitobacter sp. BIO-11 2.43.1.12.2.1.7460 OTU 1 seq prokMSA_id:62731 AF507828.1 Mono Lake at depth 35 m station 6 July 2000 clone ML635J-2 proteobacterium 2.43.1.12.2.1.7476 OTU 1 seq prokMSA_id:32029 AF359526.1 Alexandrium lusitanicum NEPCC 253 2.43.1.12.2.1.7485 OTU 6 seqs prokMSA_id:5858 M83806.1 Hyphomonas jannaschiana prokMSA_id:5860 AF082789.1 Hyphomonas jannaschiana str. VP-2 prokMSA_id:5865 AJ227814.1 Hyphomonas jannaschiana str. ATCC 33883 (T) prokMSA_id:5866 AF082790.1 Hyphomonas adhaerens str. MHS-3 prokMSA_id:5872 AF082799.1 Hyphomonas jannaschiana str. VP-1 prokMSA_id:81308 AY216440.1 temperate estuarine mud clone KM82 2.43.1.12.2.1.7493 OTU 1 seq prokMSA_id:81378 AY167339.1 Roseobacter sp. str. ARK9990 2.43.1.12.2.1.7499 OTU 1 seq prokMSA_id:32000 AF034933.1 obtained Accessory Nidamental Gland squid pealei July (mature female Marine Resources Center MBL). This clone similar 1b 4b D44 near-complete clones 1a 1c 1g represent stable frequently found Egg popu 2.43.1.12.2.1.7508 OTU 1 seq prokMSA_id:86041 AY250888.1 lichen-dominated Antarctic cryptoendolithic community clone FBP492 2.43.1.12.2.1.7511 OTU 1 seq prokMSA_id:5629 U37762.1 Prionitis lanceolata gall symbiont 2.43.1.12.2.1.7513 OTU 1 seq prokMSA_id:80728 AF468358.1 Arctic sea ice ARK10036 2.43.1.12.2.1.7515 OTU 1 seq prokMSA_id:27188 AB041770.1 Paracoccus kawasakiensis str. AS-8 2.43.1.12.2.1.7517 OTU 1 seq prokMSA_id:34269 AF323268.1 bioreactor processing inorganic sulfide and mercaptans isolate str. W6P-1 2.43.1.12.2.1.7523 OTU 1 seq prokMSA_id:5828 D16426.1 Rhodovulum euryhalinum 2.43.1.12.2.1.7527 OTU 1 seq prokMSA_id:31063 AF469354.1 clone CTD56B 2.43.1.12.2.1.7536 OTU 1 seq prokMSA_id:48409 AJ296551.1 uranium mining mill tailing clone GR-Sh1-107 GR-Sh1-107 2.43.1.12.2.1.7542 OTU 1 seq prokMSA_id:5830 D16419.1 Rhodobacter species 2.43.1.12.2.1.7560 OTU 113 seqs prokMSA_id:5659 AF026462.1 Roseobacter sp. J2W prokMSA_id:5660 AF026463.1 Roseobacter sp. J8W prokMSA_id:17095 AF190210.1 obtained Pfiesteria-complex dinoflagellate CCMP 1829 isolate str. RS29AI4 prokMSA_id:17479 AF177566.1 surface marine clone D033 prokMSA_id:19633 AF367395.1 Rhodobacter group clone D099 prokMSA_id:20851 AF473920.1 template extracted Diploria strigosa with BBD clone 128-27 prokMSA_id:21624 AF367402.1 Rhodobacter group clone D128 prokMSA_id:21726 AB047143.1 seawater d Japan sea clone SW8 prokMSA_id:23231 AF231433.1 Humic substances enrichment clone A32 prokMSA_id:23678 AF177558.1 surface marine clone D019 prokMSA_id:23711 AF367403.1 Rhodobacter group clone D129 prokMSA_id:23794 AF473928.1 template extracted Diploria strigosa with BBD clone 128-41 prokMSA_id:26535 AF177569.1 surface marine clone D131 prokMSA_id:26869 AF177550.1 surface marine clone D006 prokMSA_id:27011 AF177553.1 surface marine clone D013 prokMSA_id:27347 AF177559.1 surface marine clone D021 prokMSA_id:27727 U84033.1 prokMSA_id:28125 AF367399.1 Rhodobacter group clone D103 prokMSA_id:28489 U84029.1 prokMSA_id:29993 U84026.1 prokMSA_id:33654 AF194398.1 molecular isolate; brown tide algal CCMP1784 clone kpc14f prokMSA_id:34644 AF367385.1 Rhodobacter group clone D058 prokMSA_id:35806 U84030.1 prokMSA_id:36176 AF177556.1 surface marine clone D016 prokMSA_id:37297 AF177555.1 surface marine clone D015 prokMSA_id:38977 AF177549.1 surface marine clone D005 prokMSA_id:39602 AF107209.1 Roseobacter sp. (Prionitis filiformis symbiont) (Prionitis prokMSA_id:40701 U84024.1 prokMSA_id:42665 AF328161.1 clone KS5 prokMSA_id:43595 AF177554.1 surface marine clone D014 prokMSA_id:43926 U84023.1 prokMSA_id:44395 AF194392.1 molecular isolate; brown tide algal CCMP1784 clone kpc11f prokMSA_id:45040 AF296147.1 salt marsh sediment isolate str. JA13 prokMSA_id:46669 AJ298352.1 obtained nutrient-enriched Mediterranean seawater mesocosm clone DGGE band -74 prokMSA_id:46840 AF177562.1 surface marine clone D028 prokMSA_id:47573 AF177564.1 surface marine clone D030 prokMSA_id:47757 AF367381.1 Rhodobacter group clone D045 prokMSA_id:48437 U84036.1 prokMSA_id:49265 AJ244795.1 Sepia officinalis symbiont prokMSA_id:49308 AJ298353.1 obtained nutrient-enriched Mediterranean seawater mesocosm clone DGGE band -95 prokMSA_id:50041 AJ244781.1 Sepia officinalis symbiont prokMSA_id:54244 AF254106.1 thiosulfate-oxidizing north atlantic continental slope sediments at 1500 m depth isolate str. DIII4* DIII4* prokMSA_id:55927 AY095922.1 prokMSA_id:56424 AY095612.1 prokMSA_id:56502 AY095898.1 prokMSA_id:56559 AJ319855.1 satellite Dytilum brightwellii clone SB-46-DB prokMSA_id:57753 AJ512211.1 marine WTs-5 prokMSA_id:59165 AY136135.1 Roseobacter sp. str. RED85 prokMSA_id:59166 AY136134.1 Roseobacter gallaeciensis str. RED81 prokMSA_id:59224 AJ319863.1 satellite Leptocylindrus danicus clone SB-14/19-LD prokMSA_id:59240 AJ319843.1 satellite Asterionella glacialis clone SB-8/30-AG prokMSA_id:61951 AJ244714.1 France:Nice isolate str. V4.ME.23 = MM_2337 V4.ME.23 prokMSA_id:64897 AY095884.1 prokMSA_id:64908 AY095875.1 prokMSA_id:64984 AY095926.1 prokMSA_id:65004 AY095904.1 prokMSA_id:65055 AY095765.1 prokMSA_id:65067 AY095752.1 prokMSA_id:65069 AY095749.1 prokMSA_id:65072 AY095745.1 prokMSA_id:65099 AY095715.1 prokMSA_id:65121 AY095686.1 prokMSA_id:65126 AY095685.1 prokMSA_id:65131 AY095678.1 prokMSA_id:65140 AY095666.1 prokMSA_id:65153 AY095617.1 prokMSA_id:65154 AY095613.1 prokMSA_id:65159 AY095611.1 prokMSA_id:65161 AY095608.1 prokMSA_id:65163 AY095604.1 prokMSA_id:65171 AY095592.1 prokMSA_id:65186 AY095573.1 prokMSA_id:68669 AJ439357.1 Prionitis sp. GIg-5 prokMSA_id:68670 AJ439359.1 Ruegeria sp. GPl-3 prokMSA_id:68671 AJ439356.1 Ruegeria sp. RTs-2 prokMSA_id:68672 AJ439358.1 Ruegeria sp. SPl-1 prokMSA_id:68674 AJ439360.1 Ruegeria sp. GIg-3 prokMSA_id:68675 AJ439355.1 Ruegeria sp. WRs-11 prokMSA_id:69379 AF544896.1 clone A191-7 prokMSA_id:69697 AF466885.1 seawater clone prokMSA_id:70578 AF466921.1 seawater clone prokMSA_id:71324 AJ515038.1 Ruegeria sp. TCg-3 prokMSA_id:71580 AF173972.1 Roseobacter sp. str. KT0917 prokMSA_id:71804 AF254105.1 thiosulfate-oxidizing north atlantic continental slope sediments at 1500 m depth isolate str. EI1* EI1* prokMSA_id:72021 AJ515035.1 Rhodobacteraceae LSc-10 prokMSA_id:72376 AJ515037.1 Antarctobacter sp. LTs-7 prokMSA_id:72563 AF466902.1 seawater clone prokMSA_id:72959 AJ298351.1 obtained Mediterranean seawater mesocosm clone DGGE band AY-58 prokMSA_id:74444 AF544890.1 clone A191-1 prokMSA_id:74518 AJ515044.1 Ruegeria sp. GIg-9 prokMSA_id:74704 AF170784.1 clone QSSC9L-6 prokMSA_id:74754 AF177551.1 surface marine clone D009 prokMSA_id:75436 AF344295.1 DGGE band GL2.3; hypersaline microbial mat; uses glycolate clone prokMSA_id:77644 AY172276.1 petri dish clone 320 prokMSA_id:78028 AY172274.1 petri dish clone 113 prokMSA_id:79622 AY193216.1 marine sediment clone BMS18 prokMSA_id:79969 AY193228.1 marine sediment clone BMS49 prokMSA_id:80376 AY193224.1 marine sediment clone BMS33 prokMSA_id:80431 AY193282.1 marine tidal mat clone BTM82 prokMSA_id:80890 AY193231.1 marine sediment clone BMS82 prokMSA_id:80899 AY193217.1 marine sediment clone BMS21 prokMSA_id:80948 AY193156.1 marine sediment clone BMS13 prokMSA_id:81551 AF466710.1 clone DBS7 prokMSA_id:82740 AJ495605.1 Mediterranean saltern clone prokMSA_id:82998 AJ557864.1 seawater prokMSA_id:83010 AY241410.1 isolate str. UST010723-016 prokMSA_id:83361 AY263714.1 sulfide-oxidizing denitrifying fluidized-bed reactor clone FBE5 prokMSA_id:83713 AY263728.1 sulfide-oxidizing denitrifying fluidized-bed reactor clone FBR14 prokMSA_id:88691 AY323136.1 Acropora palmata with white band disease clone A115-15 prokMSA_id:91288 AY258610.1 Australia: Sydney clone prokMSA_id:91878 AY332660.1 Roseobacter sp. str. TM1035 prokMSA_id:104586 AB159209.1 coastal seawater isolate str. SE-1 prokMSA_id:109584 AY845239.1 sponge clone 36P5 2.43.1.12.2.1.7590 OTU 1 seq prokMSA_id:80030 AF468366.1 Arctic sea ice ARK10109 2.43.1.12.2.1.7596 OTU 1 seq prokMSA_id:86328 AF539789.1 marine isolate str. R11 2.43.1.12.2.1.7602 OTU 25 seqs prokMSA_id:5690 U14583.1 Octadecabacter antarcticus prokMSA_id:5697 U73725.1 Octadecabacter arcticus str. 238 prokMSA_id:79813 AF468369.1 Arctic sea ice ARK10175-1 prokMSA_id:79937 AF468368.1 Arctic sea ice ARK10126 prokMSA_id:80122 AF468377.2 Arctic sea ice ARK10249 prokMSA_id:80348 AF468361.1 Arctic sea ice ARK10073 prokMSA_id:80399 AF468321.1 Arctic sea ice; northern Fram Strait clone ARKICE-158 prokMSA_id:80544 AF468379.2 Arctic sea ice ARK10285 prokMSA_id:80593 AF468363.1 Arctic sea ice ARK10090 prokMSA_id:80710 AF468370.2 Arctic sea ice ARK10176 prokMSA_id:80714 AF468364.2 Arctic sea ice ARK10092 prokMSA_id:80723 AF468355.2 Arctic sea ice ARK10026 prokMSA_id:80827 AF468365.1 Arctic sea ice ARK10099 prokMSA_id:80855 AF468299.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-135 prokMSA_id:80968 AF468356.1 Arctic sea ice ARK10029 prokMSA_id:81030 AF468372.2 Arctic sea ice ARK10197 prokMSA_id:81031 AF468362.2 Arctic sea ice ARK10081 prokMSA_id:81135 AY167335.1 Octadecabacter sp. str. ANT9190 prokMSA_id:81431 AY167258.2 Octadecabacter sp. str. ANT9237 prokMSA_id:81453 AY167336.1 Octadecabacter sp. str. ANT9191 prokMSA_id:81601 AY165579.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-50 sea prokMSA_id:82065 AY167256.2 Octadecabacter sp. str. ANT9232 prokMSA_id:82085 AY167337.1 Octadecabacter sp. str. ANT9202 prokMSA_id:82271 AY167255.2 Octadecabacter sp. str. ANT9212 prokMSA_id:82421 AY167252.1 Octadecabacter sp. str. ANT9035 2.43.1.12.2.1.7609 OTU 1 seq prokMSA_id:5811 U88042.1 Amaricoccus macauensis 2.43.1.12.2.1.7612 OTU 1 seq prokMSA_id:5812 U88043.1 Amaricoccus veronensis 2.43.1.12.2.1.7615 OTU 1 seq prokMSA_id:5814 M60671.1 Rhodobacter capsulatus 2.43.1.12.2.1.7618 OTU 1 seq prokMSA_id:49413 AF234740.1 sludge clone A15b 2.43.1.12.2.1.7627 OTU 1 seq prokMSA_id:32086 AF259622.1 Philippines clone 8 2.43.1.12.2.1.7630 OTU 1 seq prokMSA_id:44621 AB041273.1 clone ECS3 2.43.1.12.2.1.7636 OTU 1 seq prokMSA_id:52602 AF328227.1 clone KS96 2.43.1.12.2.1.7637 OTU 1 seq prokMSA_id:52259 AF194390.1 Maricaulis sp. str. kbc07 2.43.1.12.2.1.7648 OTU 1 seq prokMSA_id:35622 AF359530.1 Alexandrium tamarense NEPCC 407 2.43.1.12.2.1.7649 OTU 1 seq prokMSA_id:5867 AF082791.1 Hyphomonas johnsonii str. MHS-2 2.43.1.12.2.1.7650 OTU 1 seq prokMSA_id:28407 AF296197.1 2.43.1.12.2.1.7653 OTU 1 seq prokMSA_id:34872 AF465360.1 Ruegeria sp. str. UST991130-042 2.43.1.12.2.1.7654 OTU 1 seq prokMSA_id:5822 Y15012.1 Rhodovulum robiginosum str. N2 2.43.1.12.2.1.7656 OTU 1 seq prokMSA_id:5826 Y15011.1 Rhodovulum iodosum str. N1 2.43.1.12.2.1.7657 OTU 1 seq prokMSA_id:5827 AF142894.1 clone EKHO-11 2.43.1.12.2.2 sf_2 1 seq 2.43.1.12.2.2.7236 OTU 1 seq prokMSA_id:78131 AB089091.1 termite gut homogenate clone Rs-B62 2.43.1.12.3 Unclassified 11 seqs 2.43.1.12.3.1 sf_5 11 seqs 2.43.1.12.3.1.6642 OTU 1 seq prokMSA_id:25112 AJ002563.1 Marine (isolate SRF1) clone 2.43.1.12.3.1.6659 OTU 1 seq prokMSA_id:5839 AB015526.1 deep-sea sediment clone BD1-17 2.43.1.12.3.1.6709 OTU 1 seq prokMSA_id:33175 AF355035.1 marine clone Arctic96B-9a 2.43.1.12.3.1.6738 OTU 1 seq prokMSA_id:55851 AF502220.1 EBPR sludge lab scale clone HP1B78 2.43.1.12.3.1.7025 OTU 1 seq prokMSA_id:79141 AF382105.1 bacterioplankton clone ZA2526c 2.43.1.12.3.1.7068 OTU 3 seqs prokMSA_id:18991 AF359547.1 Scrippsiella trochoidea NEPCC 15 prokMSA_id:24031 AF425757.1 Maricaulis sp. clone MERTZ_0CM_265 prokMSA_id:61139 AF530128.1 isolate str. MGP-1 2.43.1.12.3.1.7131 OTU 1 seq prokMSA_id:5680 L15345.1 Alpha proteobacterium 4 2.43.1.12.3.1.7471 OTU 1 seq prokMSA_id:60184 AJ347025.1 sponge clone TK03 2.43.1.12.3.1.7617 OTU 1 seq prokMSA_id:59347 AF502221.1 EBPR sludge lab scale clone HP1B26 2.43.1.13 Rhodovibrio 2 seqs 2.43.1.13.1 Unclassified 2 seqs 2.43.1.13.1.1 sf_1 2 seqs 2.43.1.13.1.1.6715 OTU 1 seq prokMSA_id:4399 D14432.1 Rhodovibrio salinarum 2.43.1.13.1.1.7431 OTU 1 seq prokMSA_id:62473 AJ318524.1 Rhodovibrio sodomensis str. SG3105 2.43.1.14 Rickettsiales 245 seqs 2.43.1.14.1 Anaplasmataceae 161 seqs 2.43.1.14.1.1 sf_3 159 seqs 2.43.1.14.1.1.6628 OTU 13 seqs prokMSA_id:6080 U17060.1 Wolbachia sp. prokMSA_id:6088 X61768.1 Wolbachia pipientis prokMSA_id:6090 M84686.1 incompatibility symbiont of Nasonia vitripennis prokMSA_id:6094 U83090.1 Wolbachia sp prokMSA_id:6095 U83091.1 Wolbachia sp prokMSA_id:6096 U83092.1 Wolbachia sp prokMSA_id:6097 U83093.1 Wolbachia sp prokMSA_id:6098 U83094.1 Wolbachia sp prokMSA_id:6099 U83095.1 Wolbachia sp prokMSA_id:6100 U83096.1 Wolbachia sp prokMSA_id:6101 U83097.1 Wolbachia sp prokMSA_id:6128 U23709.1 Wolbachia pipientis prokMSA_id:6129 AB025965.1 Callosobruchus chinensis (jC strain) symbiont of 2.43.1.14.1.1.6648 OTU 13 seqs prokMSA_id:6093 AF035160.1 Wolbachia sp prokMSA_id:6104 L02888.1 Trichogramma deion symbiont prokMSA_id:6105 L02884.1 Trichogramma deion symbiont prokMSA_id:6107 AF069068.1 Litomosoides sigmodontis symbiont prokMSA_id:6108 U80584.1 Wolbachia sp prokMSA_id:6112 M85266.1 Bangasternus orientalis endosymbiont prokMSA_id:6113 M84687.1 incompatibility symbiont of Nasonia vitripennis prokMSA_id:6118 M84692.1 incompatibility symbiont of Nasonia longicornis prokMSA_id:6120 M84689.1 incompatibility symbiont of Nasonia giraulti prokMSA_id:6124 AJ010275.1 Wolbachia endosymbiont of Brugia malayi prokMSA_id:6125 AF051145.1 Wolbachia sp. symbiont of Brugia malayi prokMSA_id:6142 L02887.1 Trichogramma deion symbiont prokMSA_id:83890 AF487892.1 Wolbachia endosymbiont of Dirofilaria immitis 2.43.1.14.1.1.6699 OTU 1 seq prokMSA_id:6047 U52514.1 Ehrlichia-like sp. 2.43.1.14.1.1.6803 OTU 8 seqs prokMSA_id:6109 U83098.1 Wolbachia sp prokMSA_id:18468 AY007548.1 Wolbachia sp. Ablan16SWol prokMSA_id:28156 AY007549.1 Wolbachia sp. Avit16SWol prokMSA_id:30977 AY007551.1 Wolbachia sp. WCR16SWol prokMSA_id:34685 AF220604.1 Wolbachia sp prokMSA_id:41221 AY007547.1 Wolbachia sp. Dlem16SWol prokMSA_id:52243 AY007550.1 Wolbachia sp. Dcris16SWol prokMSA_id:52332 AF232234.1 Nephila clavata symbiont 2.43.1.14.1.1.6865 OTU 4 seqs prokMSA_id:6025 AF104680.1 Candidatus Neoehrlichia prokMSA_id:59553 AY135531.1 Candidatus Neoehrlichia mikurensis str. Rattus strain mikurensis prokMSA_id:63883 AB084582.1 originally submitted as 'Ehrlichia-like sp. TK4456' isolate str. TK4456 mikurensis prokMSA_id:63884 AB074460.1 originally submitted as 'Ehrlichia sp. IS58' isolate str. IS58 mikurensis 2.43.1.14.1.1.6890 OTU 1 seq prokMSA_id:110671 AB196475.1 Anaplasma bovis str. NR07 2.43.1.14.1.1.6907 OTU 1 seq prokMSA_id:6117 L02886.1 Wolbachia sp 2.43.1.14.1.1.6908 OTU 5 seqs prokMSA_id:6121 M85267.1 Rhinocyllus conicus endosymbiont prokMSA_id:40260 Y11377.2 Kalotermes flavicollis symbiont prokMSA_id:50758 AJ279034.1 Mansonella ozzardi symbiont prokMSA_id:51738 AJ292347.1 symbiont prokMSA_id:87561 AY278355.1 Mansonella perstans symbiont 2.43.1.14.1.1.6910 OTU 6 seqs prokMSA_id:6132 AF088187.1 Dirofilaria immitis symbiont prokMSA_id:6134 AJ010276.1 Onchocerca ochengi symbiont prokMSA_id:19317 AJ276498.1 filarial nematode Onchocerca gutturosa symbiont of prokMSA_id:23966 AJ276499.1 filarial nematode Onchocerca gibsoni symbiont of prokMSA_id:43030 AF304445.1 Wolbachia sp. Okinawa-RS32 prokMSA_id:112673 AJ628417.1 Wolbachia pipientis 2.43.1.14.1.1.6975 OTU 9 seqs prokMSA_id:6054 U10873.1 Ehrlichia species prokMSA_id:6058 U77389.1 Ehrlichia sp. str. Swiss horse 1 prokMSA_id:6059 AJ242783.1 Ehrlichia sp prokMSA_id:6069 AF172164.1 Anaplasma phagocytophilum CASOLJ prokMSA_id:6071 AF172166.1 Anaplasma phagocytophilum CASITL prokMSA_id:6073 AJ242784.1 Ehrlichia sp prokMSA_id:6074 M73223.1 Ehrlichia equi prokMSA_id:25787 AF469005.1 Ehrlichia sp. str. RND-1 prokMSA_id:49397 AF241532.1 Ehrlichia sp. 'LGE agent' 2.43.1.14.1.1.7031 OTU 38 seqs prokMSA_id:6014 U23503.1 Ehrlichia chaffeensis prokMSA_id:6015 U60476.1 Ehrlichia chaffeensis str. Sapulpa prokMSA_id:6016 U86664.1 Ehrlichia chaffeensis Jax prokMSA_id:6017 U86665.1 Ehrlichia chaffeensis St. Vincent prokMSA_id:6018 AF147752.2 Ehrlichia chaffeensis prokMSA_id:6019 M73221.1 Ehrlichia canis prokMSA_id:6022 AF162860.1 Ehrlichia canis str. Gzh982 prokMSA_id:6023 U54805.1 Ehrlichia sp. str. Germishuys prokMSA_id:6024 X61659.1 Cowdria ruminantium prokMSA_id:6026 M73227.1 Ehrlichia ewingii prokMSA_id:6027 U96436.1 Ehrlichia ewingii str. 95E9-TS prokMSA_id:6028 U15527.1 Ehrlichia muris prokMSA_id:6030 AB013008.1 Ehrlichia muris str. I268 prokMSA_id:6031 AB013009.1 Ehrlichia muris str. NA1 prokMSA_id:6032 M73222.1 Ehrlichia chaffeensis prokMSA_id:6033 M73226.1 Ehrlichia canis prokMSA_id:6034 AF069758.1 Ehrlichia ruminantium Mara 87/7 prokMSA_id:6037 X62432.1 Cowdria ruminantium prokMSA_id:6038 U26740.1 Ehrlichia canis prokMSA_id:16712 AF318021.1 Ehrlichia ruminantium str. Porto Henrique prokMSA_id:19195 AF416764.1 Ehrlichia chaffeensis str. Arkansas prokMSA_id:24968 AF311967.1 Ehrlichia sp. str. ERm58 prokMSA_id:30672 AF260591.2 Ehrlichia sp. HI-2000 prokMSA_id:32463 AF373612.1 Ehrlichia canis VHE prokMSA_id:36711 AB024928.1 Ehrlichia sp. str. HF565 prokMSA_id:38150 AF318946.1 Ehrlichia ovina Turkey prokMSA_id:38268 AF373613.1 Ehrlichia canis VDE prokMSA_id:40434 AB028319.1 Ehrlichia sp. str. Anan prokMSA_id:41424 AF414399.1 Ehrlichia sp. Tibet prokMSA_id:48642 AF325175.1 Ehrlichia sp. 'South African canine' prokMSA_id:50091 AF318022.1 Ehrlichia ruminantium str. Bela Vista prokMSA_id:70749 AF311968.1 Ehrlichia sp. str. EHt224 prokMSA_id:82252 AF497581.1 Ehrlichia sp. EBm52 prokMSA_id:94201 AF536827.1 Ehrlichia canis str. Kagoshima 1 prokMSA_id:100255 AY309970.1 Ehrlichia sp. EH727 prokMSA_id:105537 AY309969.1 Ehrlichia sp. EHf669 prokMSA_id:107057 AB074459.1 Ehrlichia sp. str. TS37 prokMSA_id:108034 AB178793.1 Ehrlichia sp. str. Shizuoka-36 2.43.1.14.1.1.7083 OTU 29 seqs prokMSA_id:6039 M60313.1 Anaplasma marginale prokMSA_id:18751 AF309865.1 Anaplasma ovis str. Idaho prokMSA_id:23009 AF309867.1 Anaplasma marginale prokMSA_id:25427 AF283007.1 Anaplasma centrale prokMSA_id:28040 AF309866.1 Anaplasma marginale str. Virginia prokMSA_id:28557 AF318944.1 Anaplasma centrale str. vaccine prokMSA_id:29417 AF309869.1 Anaplasma centrale str. Israel vaccine prokMSA_id:30827 AF311303.1 Anaplasma marginale prokMSA_id:44706 AF309868.1 Anaplasma marginale str. South Idaho prokMSA_id:50430 AF318945.1 Anaplasma ovis 1/11/2/480 sheep 3573/7 prokMSA_id:56843 AY125087.2 Aegyptianella pullorum prokMSA_id:58998 AY048816.1 Anaplasma marginale prokMSA_id:79130 AF414876.1 Anaplasma marginale tailed prokMSA_id:79178 AF414874.1 Anaplasma marginale str. F12 prokMSA_id:79180 AF414871.1 Anaplasma marginale prokMSA_id:79361 AF414872.1 Anaplasma marginale Eland prokMSA_id:79444 AF414868.1 Anaplasma centrale str. vaccine prokMSA_id:79581 AF414873.1 Anaplasma marginale str. Veld prokMSA_id:99202 AJ633050.1 Anaplasma ovis Yuzhong prokMSA_id:99352 AJ633051.1 Anaplasma ovis Zhangjiachuan prokMSA_id:99448 AF414870.1 Anaplasma ovis OVI prokMSA_id:99506 AJ633052.1 Anaplasma ovis Chende prokMSA_id:100226 AF414875.1 Anaplasma marginale non-tailed prokMSA_id:100545 AF414877.1 Anaplasma marginale prokMSA_id:100702 AF414878.1 Anaplasma marginale 2:3 prokMSA_id:104350 AJ633048.1 Anaplasma marginale Lushi prokMSA_id:104509 AJ633049.1 Anaplasma ovis Jingtai prokMSA_id:104748 AF414869.1 Anaplasma centrale prokMSA_id:106232 AY262124.1 Anaplasma ovis 2.43.1.14.1.1.7091 OTU 6 seqs prokMSA_id:6041 M82801.1 "Ehrlichia platys" prokMSA_id:6042 AF156784.1 Anaplasma platys str. Gzh981 prokMSA_id:6048 U54806.1 Ehrlichia sp. str. Omatjenne prokMSA_id:18302 AF287153.1 Anaplasma platys prokMSA_id:33737 AF318023.1 Ehrlichia sp. str. Bom Pastor prokMSA_id:42949 AF286699.1 Anaplasma platys 2.43.1.14.1.1.7304 OTU 1 seq prokMSA_id:17901 AF206298.1 Ehrlichia sp. 'trout isolate' trout 2.43.1.14.1.1.7305 OTU 14 seqs prokMSA_id:5996 M21290.1 Neorickettsia risticii prokMSA_id:5998 AF036653.1 Neorickettsia risticii prokMSA_id:6003 AF036649.1 Neorickettsia risticii prokMSA_id:6004 AF036654.1 Neorickettsia risticii prokMSA_id:6005 AF037210.1 Neorickettsia risticii str. SHSN-1 prokMSA_id:6006 AF037211.1 Neorickettsia risticii str. SHSN-2 prokMSA_id:6007 U34280.1 Ehrlichia sp. prokMSA_id:6011 M73225.1 Ehrlichia sennetsu prokMSA_id:6012 M73219.1 Ehrlichia sennetsu prokMSA_id:24883 AY005439.1 Neorickettsia risticii S22 prokMSA_id:31250 AY005441.1 Neorickettsia risticii S6 prokMSA_id:33480 AF206300.1 Neorickettsia risticii str. Shasta-CDMP prokMSA_id:67336 AF380257.1 Neorickettsia risticii prokMSA_id:67337 AF380258.1 Neorickettsia risticii 2.43.1.14.1.1.7378 OTU 1 seq prokMSA_id:23566 AJ276500.1 filarial nematode Dirofilaria repens symbiont of 2.43.1.14.1.1.7481 OTU 9 seqs prokMSA_id:6082 L02882.1 Muscifidurax uniraptor symbiont prokMSA_id:6106 M84688.1 incompatibility symbiont of Nasonia vitripennis prokMSA_id:6127 M84690.1 symbiont prokMSA_id:6130 U17059.1 Wolbachia sp. prokMSA_id:6140 M84691.1 incompatibility symbiont of Nasonia longicornis prokMSA_id:28825 AF179630.1 Wolbachia pipientis prokMSA_id:72880 AJ422184.1 symbiont prokMSA_id:77810 AJ509026.1 Paratullbergia callipygos symbiont prokMSA_id:89135 AF491888.1 Acromyrmex otcospinosus symbiont 2.43.1.14.1.2 sf_4 2 seqs 2.43.1.14.1.2.7434 OTU 2 seqs prokMSA_id:6002 AF069062.1 uncharacterised Ehrlichia-like organism; direct amplification infected digestive diverticulum tissue Haliotis cracherodii 91-303 isolate str. WSA californiensis prokMSA_id:6010 AF133090.2 obtained infected black abalone central California coastline 2.43.1.14.2 Holosporaceae 5 seqs 2.43.1.14.2.1 sf_1 3 seqs 2.43.1.14.2.1.6677 OTU 2 seqs prokMSA_id:40401 AF132139.1 Acanthamoeba endosymbiont UWET39 prokMSA_id:64551 AY102614.1 Acanthamoeba endosymbiont TUMK-23 2.43.1.14.2.1.7159 OTU 1 seq prokMSA_id:24244 AF132137.1 Acanthamoeba endosymbiont UWC9 2.43.1.14.2.2 sf_2 2 seqs 2.43.1.14.2.2.6886 OTU 2 seqs prokMSA_id:5951 AF069962.1 Acanthamoeba endosymbiont clone UWC36 prokMSA_id:5966 AF069963.1 Acanthamoeba endosymbiont clone UWC8 2.43.1.14.3 Rickettsiaceae 74 seqs 2.43.1.14.3.1 sf_1 73 seqs 2.43.1.14.3.1.6809 OTU 27 seqs prokMSA_id:5925 U12460.1 Rickettsia conorii prokMSA_id:5926 L36098.1 Rickettsia africae prokMSA_id:5927 U25042.1 Rickettsia species prokMSA_id:5928 L36102.1 Rickettsia species prokMSA_id:5934 L36224.1 "Rickettsia slovaca" prokMSA_id:5936 L36100.1 Rickettsia species prokMSA_id:5937 L36107.1 Rickettsia conorii prokMSA_id:5945 L36223.1 Rickettsia species prokMSA_id:5946 L36214.1 Rickettsia massiliae prokMSA_id:5948 L36213.1 Rickettsia japonica prokMSA_id:5954 U11021.1 Rickettsia rickettsii prokMSA_id:5956 U12462.1 Rickettsia sibirica prokMSA_id:5957 L36220.1 Rickettsia species prokMSA_id:5958 AF060705.2 Rickettsia honei str. RB prokMSA_id:5963 U17645.1 "Rickettsia honei" prokMSA_id:5965 L36106.1 Rickettsia massiliae prokMSA_id:5967 L36217.1 Rickettsia rickettsii prokMSA_id:5970 L36216.1 Rickettsia rhipicephali prokMSA_id:5971 L36105.1 Rickettsia conorii prokMSA_id:5975 D38628.1 Rickettsia sibirica prokMSA_id:5976 L36673.1 Rickettsia parkeri prokMSA_id:26925 AF120024.1 Rickettsia sp. str. DnS28 prokMSA_id:27672 AF120025.1 Rickettsia sp. str. DnS14 prokMSA_id:37110 AF178037.2 Rickettsia heilongjiangii str. HLJ-054 prokMSA_id:45313 AF120026.1 Rickettsia sp. str. RpA4 prokMSA_id:65330 AF394902.1 Rickettsia sp. str. DT1 prokMSA_id:75477 AY158006.1 Rickettsia sp. JL-02 2.43.1.14.3.1.6831 OTU 1 seq prokMSA_id:63333 AF523878.1 forested wetland clone RCP2-17 2.43.1.14.3.1.6988 OTU 1 seq prokMSA_id:5952 AB021128.1 Rickettsia sp 2.43.1.14.3.1.7114 OTU 1 seq prokMSA_id:5924 M21789.1 Rickettsia prowazekii 2.43.1.14.3.1.7234 OTU 1 seq prokMSA_id:5960 M20499.1 Rickettsia typhi 2.43.1.14.3.1.7321 OTU 5 seqs prokMSA_id:39764 AB066352.1 Hemiclepsis marginata (leech) symbiont prokMSA_id:52394 AB066351.1 Torix tagoi (leech) symbiont prokMSA_id:107677 AB113215.1 Hemiclepsis marginata (leech) symbiont prokMSA_id:111884 AF322442.1 Rickettsia limoniae str. Gent prokMSA_id:112236 AF322443.1 Rickettsia limoniae str. Brugge 2.43.1.14.3.1.7367 OTU 6 seqs prokMSA_id:5979 D38624.1 Orientia tsutsugamushi prokMSA_id:5980 U17258.1 Orientia tsutsugamushi prokMSA_id:5982 AF062074.1 Orientia tsutsugamushi str. Litchfield prokMSA_id:5983 U17257.1 Orientia tsutsugamushi prokMSA_id:5985 L36222.1 Orientia tsutsugamushi prokMSA_id:5986 U17256.1 Orientia tsutsugamushi 2.43.1.14.3.1.7552 OTU 1 seq prokMSA_id:35350 AF445655.1 travertine hot spring clone SM1B06 2.43.1.14.3.1.7556 OTU 30 seqs prokMSA_id:5922 U04163.1 Rickettsia species prokMSA_id:5923 L36101.1 Rickettsia australis prokMSA_id:5929 D84558.1 Ixodes scapularis symbiont prokMSA_id:5930 U74757.1 Rickettsia aeschlimannii str. Mc16 prokMSA_id:5932 L36221.1 Rickettsia typhi prokMSA_id:5935 U11016.1 Rickettsia montana prokMSA_id:5938 L36212.1 Rickettsia helvetica prokMSA_id:5939 U12463.1 Rickettsia typhi prokMSA_id:5940 U11012.1 Rickettsia amblyommii prokMSA_id:5941 L36104.1 Rickettsia canada prokMSA_id:5943 L36099.1 Rickettsia akari prokMSA_id:5944 U11019.1 Rickettsia rhipicephali prokMSA_id:5947 U17644.1 Rickettsia australis prokMSA_id:5949 U42084.1 "Rickettsia PAR" prokMSA_id:5950 U11014.1 Rickettsia bellii str. strains 369-C and G2D42 prokMSA_id:5953 U12461.1 Rickettsia parkeri prokMSA_id:5959 U12459.1 Rickettsia australis prokMSA_id:5961 L36103.1 Rickettsia bellii str. 369L42-1 prokMSA_id:5962 U76910.1 Rickettsia sp. str. Puerto Rico prokMSA_id:5964 L28944.1 Rickettsia species prokMSA_id:5968 U15162.1 Rickettsia canada prokMSA_id:5973 L36215.1 Rickettsia montana prokMSA_id:19942 AF141908.1 Rickettsia sp. str. IRS 4 prokMSA_id:28211 AF178036.1 Rickettsia sp. str. BJ-90 prokMSA_id:49155 AF141907.1 Rickettsia sp. IRS3 str. IRS 3 prokMSA_id:55503 AF394904.1 Rickettsia sp. str. IP1 prokMSA_id:65324 AF394906.1 Rickettsia sp. str. IO1 prokMSA_id:65325 AF394905.1 Rickettsia sp. str. IM1 prokMSA_id:65333 AY049981.1 Rickettsia sp. str. AT1 prokMSA_id:84326 AF503168.1 " /record_format=prokMSA genbank" 2.43.1.14.3.2 sf_2 1 seq 2.43.1.14.3.2.6724 OTU 1 seq prokMSA_id:5942 AB015522.1 deep-sea sediment clone BD1-10 2.43.1.14.4 Unclassified 5 seqs 2.43.1.14.4.1 sf_1 3 seqs 2.43.1.14.4.1.7156 OTU 1 seq prokMSA_id:78393 AB089097.1 termite gut homogenate clone Rs-M62 proteobacterium 2.43.1.14.4.1.7503 OTU 1 seq prokMSA_id:4551 AF069496.1 Candidatus Odyssella thessalonicensis 2.43.1.14.4.1.7616 OTU 1 seq prokMSA_id:45099 AJ318202.1 waste-gas biofilter clone BIxi22 2.43.1.14.4.2 sf_2 1 seq 2.43.1.14.4.2.6639 OTU 1 seq prokMSA_id:81215 AF497582.1 detected Haemaphysalis wellingtoni removed chicken Thailand clone Hw191 2.43.1.14.4.3 sf_4 1 seq 2.43.1.14.4.3.7118 OTU 1 seq prokMSA_id:6197 AJ007875.1 lake clone LD10 2.43.1.15 Sphingomonadales 432 seqs 2.43.1.15.1 Sphingomonadaceae 422 seqs 2.43.1.15.1.1 sf_15 20 seqs 2.43.1.15.1.1.6700 OTU 8 seqs prokMSA_id:6344 AB033328.1 Porphyrobacter tepidarius prokMSA_id:6345 AB016518.1 Porphyrobacter sp. str. MBIC3897 GT1-4 prokMSA_id:6350 AB033327.1 Porphyrobacter neustonensis prokMSA_id:54234 AJ271042.1 deep sea isolate str. 15s.b prokMSA_id:60586 AF407713.1 Great Artesian Basin clone B10 prokMSA_id:77813 AJ505839.1 -col-BFA-6 prokMSA_id:79541 AF465834.1 Porphyrobacter cryptus str. ALC-2 prokMSA_id:89759 AY328799.1 drinking water OR2 2.43.1.15.1.1.7035 OTU 12 seqs prokMSA_id:6219 Z23157.1 cooling coil biofilm isolate BF14 prokMSA_id:6243 Y09637.1 Sphingomonas pruni prokMSA_id:6248 Y09639.1 Sphingomonas asaccharolytica prokMSA_id:6251 AB018439.1 Sphingomonas sp. S213 prokMSA_id:31767 X89903.1 Sphingomonas sp. str. PC5.2 (bright yel group 1 colony type) PC5.2 prokMSA_id:40282 AB021370.1 Sphingomonas echinoides str. ATCC 14820T prokMSA_id:48722 X89909.1 Sphingomonas sp. str. PC5.28 (orange colony type) DSM 9259 PC5.28 prokMSA_id:68657 AY081987.1 atrazine-catabolizing microbial absence methanol clone KRA30-07 prokMSA_id:71464 AJ313029.1 Sphingomonas sp. MN 18.3a prokMSA_id:74176 AF385533.1 swab advanced noma lesion clone AW030 prokMSA_id:86135 AJ555475.1 Sphingomonas sp. str. MN 18.3a prokMSA_id:113778 AY922077.1 farm soil adjacent to silage storage bunker clone AKYG937 2.43.1.15.1.2 sf_1 402 seqs 2.43.1.15.1.2.6633 OTU 1 seq prokMSA_id:21583 AF097802.2 sludge clone 1958 2.43.1.15.1.2.6650 OTU 11 seqs prokMSA_id:6238 AF116181.1 Caulobacter sp. str. CB296 prokMSA_id:55900 AF548567.1 Sphingomonas sp. str. eh2 prokMSA_id:56243 AJ429239.1 Sphingomonas faeni str. MA-olki prokMSA_id:60250 AJ429238.1 Sphingomonas aurantiaca str. MA405 prokMSA_id:60251 AJ429237.1 Sphingomonas aurantiaca str. MA306a prokMSA_id:65328 AF503280.1 Sphingomonas sp. str. ATCC 31555 prokMSA_id:71349 AJ429236.1 Sphingomonas aurantiaca str. MA101b prokMSA_id:78089 AB074640.1 pea aphid symbiont clone APe2_63 prokMSA_id:102265 AY563441.1 Sphingomonas phyllosphaerae str. FA1 prokMSA_id:102572 AY571827.1 hydrocarbon-contaminated soil clone 437D prokMSA_id:105178 AY453855.1 Sphingomonas phyllosphaerae str. FA2 2.43.1.15.1.2.6663 OTU 56 seqs prokMSA_id:6266 AB002653.1 Mariana Trench isolate HTA473 prokMSA_id:6268 X73043.1 Blastomonas natatoria prokMSA_id:6290 AJ001052.1 Sphingomonas sp. b28-16.1 prokMSA_id:6314 U85838.1 Sphingomonas sp. str. SW54 prokMSA_id:6325 D13723.1 Sphingopyxis macrogoltabida prokMSA_id:23579 AB074687.1 Japan:Lake Biwa isolate str. D-St(0)-8A prokMSA_id:25733 AB074691.1 Japan:Lake Biwa isolate str. D-St(1)-4 prokMSA_id:29325 AF235997.1 isolate str. F0813 prokMSA_id:30174 AB074740.1 Japan:Lake Biwa isolate str. S-St(1)-6C prokMSA_id:36544 AB074742.1 Japan:Lake Biwa isolate str. S-St(1)-8B prokMSA_id:38095 AB074693.1 Japan:Lake Biwa isolate str. D-St(1)-8D prokMSA_id:40275 AB074718.1 Japan:Lake Biwa isolate str. D-(2)-9 prokMSA_id:45467 AF235994.1 isolate str. F0917 prokMSA_id:48573 AB074743.1 Japan:Lake Biwa isolate str. S-St(1)-8C prokMSA_id:52854 AB074741.1 Japan:Lake Biwa isolate str. S-St(1)-7D1 prokMSA_id:66630 AY094496.1 extracted chamber connected to Ocean Drilling Program site 892b clone 1-19 prokMSA_id:68724 AF479381.1 glacial ice isolate str. M3C1.8K-TD9 prokMSA_id:70814 AY145547.1 dilution (10e-7) freshwater section Weser estuary isolate str. AP-9-1 AP-9-1 prokMSA_id:77547 AY167827.2 Sphingomonas sp. str. SAFR-042 prokMSA_id:89574 AY328745.1 drinking water system simulator clone DSSD47 prokMSA_id:89700 AY328739.1 drinking water system simulator clone DSSD40 prokMSA_id:89712 AY328823.1 drinking water Y20 prokMSA_id:90016 AY328817.1 drinking water Y14 prokMSA_id:90301 AY328703.1 drinking water system simulator clone DSSD3 prokMSA_id:90483 AY328788.1 drinking water system simulator clone DSSD91 prokMSA_id:90538 AJ575817.1 Sphingomonas sp. str. C42 prokMSA_id:90554 AY328849.1 drinking water MB27 prokMSA_id:90739 AY328794.1 drinking water system simulator clone DSSD97 prokMSA_id:92479 AY344805.1 Sphingomonas sp. str. WSCII prokMSA_id:92490 AY349411.1 human oral cavity clone FI012 prokMSA_id:96580 AY375099.1 deep sea sediment clone C7 prokMSA_id:98472 AJ575710.1 lake water enrichment clone NE73 prokMSA_id:98576 AY375102.1 deep sea sediment clone C74 prokMSA_id:99539 AY212578.1 water 10 m downstream manure clone 127ds10 prokMSA_id:100783 AY563034.1 Sphingopyxis composta str. Kw07 prokMSA_id:102512 AB114612.1 rice plant clone ER-3 prokMSA_id:104274 AY500142.1 Novosphingobium sp. T3-B9 str. T3-B9; AS 1.3432 prokMSA_id:104640 AB187587.1 Sphingomonas sp. str. Kw07 prokMSA_id:105012 AY654770.1 Oculina mucus isolate 26 prokMSA_id:105812 AY554010.1 Sphingopyxis flavimaris str. SW-151 prokMSA_id:105875 AY212693.1 water 10 m downstream manure clone 245ds10 prokMSA_id:106037 AY704921.1 Blastomonas sp. str. CF7 prokMSA_id:106185 AY704922.1 Blastomonas sp. str. TW1 prokMSA_id:106313 AY690709.1 Novosphingobium sp. str. HZ11 prokMSA_id:108048 AY771802.1 Sphingomonas sp. 1-7 prokMSA_id:108318 AY584571.1 Sphingomonas sp. HTCC500 prokMSA_id:108319 AY584572.1 Sphingomonas sp. HTCC503 prokMSA_id:111304 AJ617857.1 oxic-anoxic interphase flooded paddy soil clone D28217 prokMSA_id:111487 AY234707.1 soil isolate Ellin6055 prokMSA_id:112302 AY753176.1 Caulobacter endosymbiont Tetranychus urticae clone pAJ255 prokMSA_id:113584 AY922004.1 farm soil adjacent to silage storage bunker clone AKYG395 prokMSA_id:113876 AJ746092.1 Novosphingobium sp. MG35 prokMSA_id:113914 AY922186.1 grey whale bone Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131591 prokMSA_id:113922 AY922208.1 orange microbial mat on grey whale carcass Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131670 prokMSA_id:114188 AY922233.1 whale bone muddy seafloor off West Antarctic Peninsula Shelf (S65.10 W64.47) depth 560 meters clone 131763 prokMSA_id:114292 AY922159.1 farm soil adjacent to silage storage bunker clone AKYH831 2.43.1.15.1.2.6666 OTU 1 seq prokMSA_id:31927 AJ232863.1 rhizoplane Lolium perenne clone LRE17 2.43.1.15.1.2.6690 OTU 8 seqs prokMSA_id:6343 AB033325.1 Porphyrobacter sp. str. KK348 prokMSA_id:6352 AB022015.1 Porphyrobacter sp. str. MBIC3936 GT2-1R prokMSA_id:6361 AB033326.1 Porphyrobacter sp. str. KK351 prokMSA_id:6364 AJ223452.1 Porphyrobacter sp. 4b prokMSA_id:21655 AF445710.1 travertine hot spring clone SM2B03 prokMSA_id:37650 AY048657.1 Porphyrobacter tepidarius str. OK5APO prokMSA_id:50853 AF235995.1 isolate str. F0812 prokMSA_id:81820 AB105441.1 Batch reactor filled with cyanobacterial bloom and lake water clone -6 2.43.1.15.1.2.6696 OTU 1 seq prokMSA_id:25242 AB033945.1 Sphingomonas sp. str. IFO 15914 2.43.1.15.1.2.6706 OTU 1 seq prokMSA_id:48962 AJ252582.1 agricultural soil SI-15 2.43.1.15.1.2.6713 OTU 5 seqs prokMSA_id:6223 AJ012461.1 Sphingomonas echinoides prokMSA_id:6224 AJ001344.1 star-like microcolonies prokMSA_id:6227 AB015565.1 deep-sea sediment clone BD5-9 prokMSA_id:42568 AJ290027.1 Austria: Lake Gossenkoellesee clone GKS2-124 GKS2-124 prokMSA_id:44873 AF385529.1 swab advanced noma lesion clone AV069 2.43.1.15.1.2.6720 OTU 1 seq prokMSA_id:6365 Y10678.1 Sandaracinobacter sibiricus 2.43.1.15.1.2.6737 OTU 1 seq prokMSA_id:77316 AY167840.1 Sphingomonas sp. str. SAFR-010 2.43.1.15.1.2.6746 OTU 1 seq prokMSA_id:24166 AB074191.1 Sphingomonas sp. str. HL7 2.43.1.15.1.2.6749 OTU 1 seq prokMSA_id:79915 AF468357.1 Arctic sea ice ARK10031 2.43.1.15.1.2.6750 OTU 1 seq prokMSA_id:58870 AF423077.1 isolate str. '#33 orange' 2.43.1.15.1.2.6790 OTU 3 seqs prokMSA_id:6220 AF105023.1 Sphingomonas sp. str. DD38 prokMSA_id:6249 AF131295.2 Sphingomonas aquatilis prokMSA_id:63347 AB055863.1 Sphingomonas melonis str. PG-224 2.43.1.15.1.2.6800 OTU 1 seq prokMSA_id:49721 AF143839.1 hydrocarbon-degrading consortium clone AF1.5 2.43.1.15.1.2.6808 OTU 2 seqs prokMSA_id:26183 AJ292616.1 prokMSA_id:30355 AJ292601.1 PCB-polluted soil clone WD267 2.43.1.15.1.2.6812 OTU 1 seq prokMSA_id:39863 AF411072.1 Sphingomonas sp. str. ACM-3962 2.43.1.15.1.2.6821 OTU 5 seqs prokMSA_id:6216 D13726.1 Sphingomonas sanguinis prokMSA_id:44864 AB033944.1 Sphingomonas echinoides prokMSA_id:59540 AF538746.1 municipal wastewater treatment bioreactor isolate str. CAGY7 prokMSA_id:60396 AF513440.1 Sphingomonadaceae isolate str. LA19 prokMSA_id:95162 AJ583168.1 ground water monitoring deep-well at radioactive waste disposal site clone S15D-MN50 2.43.1.15.1.2.6835 OTU 1 seq prokMSA_id:16463 AJ391206.1 Erythrobacter sp. str. AS-45 2.43.1.15.1.2.6839 OTU 1 seq prokMSA_id:19915 D84518.1 Sphingomonas sp. str. MK329 2.43.1.15.1.2.6846 OTU 1 seq prokMSA_id:49731 AF395032.1 Sphingomonas sp. str. SIA181-1A1 2.43.1.15.1.2.6897 OTU 1 seq prokMSA_id:6162 AJ011505.1 Sphingomonas sp. str. DhA-33 2.43.1.15.1.2.6901 OTU 1 seq prokMSA_id:6203 D16149.1 Sphingomonas sp. 2 2.43.1.15.1.2.6902 OTU 1 seq prokMSA_id:6204 X94101.1 Sphingomonas sp. 2.43.1.15.1.2.6913 OTU 1 seq prokMSA_id:48821 AF425762.1 clone MERTZ_0CM_263 2.43.1.15.1.2.6928 OTU 1 seq prokMSA_id:65473 AY102309.1 heavy metal-contaminated soil clone a13102 2.43.1.15.1.2.6948 OTU 1 seq prokMSA_id:6255 D13737.1 Rhizomonas suberifaciens 2.43.1.15.1.2.7007 OTU 2 seqs prokMSA_id:17649 AJ252691.1 Rhizosphere soil RSC-II-67 () clone RSC-II-67 prokMSA_id:74773 AJ252608.1 Agricultural soil SC-I-4 () clone SC-I-4 2.43.1.15.1.2.7011 OTU 1 seq prokMSA_id:31402 AJ292605.1 PCB-polluted soil clone WD286 2.43.1.15.1.2.7014 OTU 1 seq prokMSA_id:6263 AF170744.1 Sphingomonas sp. str. QSSC5-6 2.43.1.15.1.2.7016 OTU 1 seq prokMSA_id:77307 AY167834.1 Sphingomonas sp. str. SAFR-027 2.43.1.15.1.2.7019 OTU 1 seq prokMSA_id:39607 AJ292614.1 2.43.1.15.1.2.7036 OTU 55 seqs prokMSA_id:6335 M59062.1 Erythrobacter longus prokMSA_id:6336 AB012061.1 str. MBIC2351 PC6 prokMSA_id:6337 AB012062.1 Erythrobacter sp. str. MBIC3019 D1215 prokMSA_id:6338 AB011075.1 Erythrobacter sp. str. Re1 prokMSA_id:6339 AB017812.1 str. MBIC3953 AS2 prokMSA_id:6340 AB017813.1 str. MBIC3952 AS1 prokMSA_id:6359 M96744.1 Erythrobacter longus prokMSA_id:6360 AB013354.1 Erythrobacter litoralis prokMSA_id:6362 AB019044.1 str. MBIC1402 PJC24 prokMSA_id:6363 AF118020.1 Erythrobacter citreus str. RE35F/1 prokMSA_id:29655 AB035544.1 Erythrobacter sp. str. MBIC4117 MI4 prokMSA_id:30952 AF325446.1 Erythrobacter sp. str. MB-16 prokMSA_id:31853 AF432339.1 template extracted sediment oil-contaminated nutrient amended beach microcosms; day 26 experiment clone 4%N-26d-7 proteobacterium prokMSA_id:33344 AB035545.1 Erythrobacter sp. str. MBIC4118 MI5 prokMSA_id:33905 AF314528.1 Erythrobacter citreus str. RE10F/45 prokMSA_id:37398 AF310724.1 Erythrobacter sp str. NAP1 prokMSA_id:38512 AY007680.1 Erythrobacter sp. JP13.1 prokMSA_id:40322 AF432338.1 template extracted sediment oil-contaminated nutrient amended beach microcosms; day 26 experiment clone 4%N-26d-27 proteobacterium prokMSA_id:43392 AF325445.1 Erythrobacter sp. str. SD-21 prokMSA_id:49902 AF227259.1 Erythrobacter citreus str. RE10F/45 prokMSA_id:53381 AY026916.1 Lutibacterium anuloederans str. LC8 prokMSA_id:58400 AB008816.1 Erythrobacter sp. str. MBIC3031 PC8 prokMSA_id:58405 AB008814.1 str. MBIC3030 PC3 prokMSA_id:64083 AF500005.1 Erythrobacter flavus str. SW-52 prokMSA_id:64084 AF500004.1 Erythrobacter flavus str. SW-46 prokMSA_id:74914 AJ294339.1 HY-68 prokMSA_id:78562 AB094461.1 Erythrobacter sp. str. 2216.25.25 prokMSA_id:79367 AF465836.1 Erythrobacter litoralis str. DSM 8509 prokMSA_id:82642 AY177713.1 Sphingomonadaceae T3 prokMSA_id:84563 AJ557865.1 seawater prokMSA_id:86199 AJ557869.1 seawater prokMSA_id:86299 AJ557868.1 seawater prokMSA_id:91093 AY135668.1 Southern Ocean clone ANT18/2_94 prokMSA_id:91554 AY344375.1 Lake Kauhako surface clone K2-S-15 prokMSA_id:91605 AY345436.1 Lake Kauhako water isolate str. K2-13 prokMSA_id:95355 AY375129.1 deep sea sediment clone F53 prokMSA_id:98444 AY375117.1 deep sea sediment clone F24 prokMSA_id:98735 AY375113.1 deep sea sediment clone F18 prokMSA_id:99523 AY706935.1 Erythrobacter vulgaris str. 022 2-10 prokMSA_id:99580 AY562220.1 Erythrobacter gaetbuli str. SW-161 prokMSA_id:99618 AY654830.1 Oculina mucus isolate 91 prokMSA_id:99676 AY706936.1 Erythrobacter vulgaris str. 022 2-9 prokMSA_id:99838 AY706937.1 Erythrobacter vulgaris str. 022 2-12 prokMSA_id:99989 AY706938.1 Erythrobacter vulgaris str. 022 4-7 prokMSA_id:101517 AY646157.1 Erythrobacter sp. str. JL-316 prokMSA_id:104599 AB008751.1 Unclassified Zymomonas group isolate str. N73102 prokMSA_id:104864 AY654841.1 Oculina mucus isolate 95 prokMSA_id:104885 AY562219.1 Erythrobacter seohaensis str. SW-135 prokMSA_id:105481 AY654773.1 Oculina mucus isolate 30 prokMSA_id:106420 AY461441.1 Erythrobacter aquimaris str. SW-110 prokMSA_id:106575 AY461442.1 Erythrobacter aquimaris str. SW-116 prokMSA_id:106734 AY461443.1 Erythrobacter aquimaris str. SW-140 prokMSA_id:107785 AF465835.1 Erythrobacter longus str. DSM 6997 prokMSA_id:108601 AY745820.1 Erythrobacter sp. str. JL-S4 prokMSA_id:109447 AY700619.1 Australia: Great Barrier Reef clone PDC-OTU14 2.43.1.15.1.2.7038 OTU 1 seq prokMSA_id:78108 AB074601.1 pea aphid symbiont clone APe4_19 2.43.1.15.1.2.7048 OTU 1 seq prokMSA_id:17742 AJ292599.1 PCB-polluted soil clone WD249 2.43.1.15.1.2.7055 OTU 1 seq prokMSA_id:33785 AB074709.1 Japan:Lake Biwa isolate str. S-(1)-4C 2.43.1.15.1.2.7075 OTU 6 seqs prokMSA_id:6292 Z93995.1 activated sludge clone T28 prokMSA_id:6298 AJ223450.1 Sphingomonas-like sp. 2a prokMSA_id:22564 AJ290014.1 Germany: Lake Fuchskuhle south basin clone FukuS56 prokMSA_id:36069 AJ292613.1 prokMSA_id:37092 AJ000920.2 Novosphingobium sp. str. K16 prokMSA_id:101813 AY212689.1 water 5 m downstream manure clone 241ds5 2.43.1.15.1.2.7090 OTU 5 seqs prokMSA_id:6262 Y10677.1 Blastomonas ursincola prokMSA_id:6264 AB024288.1 Blastomonas natatoria prokMSA_id:6265 AB024289.1 Blastomonas ursinicola prokMSA_id:6269 Y13774.1 Blastomonas natatoria prokMSA_id:61834 AF529332.1 PCE-contaminated site clone CLi292 2.43.1.15.1.2.7100 OTU 3 seqs prokMSA_id:6278 D16147.1 Novosphingobium capsulatum prokMSA_id:6280 AJ001053.1 Sphingomonas sp. str. C28242 paper processing machines C28242 prokMSA_id:6297 AJ224989.1 closest relative Sphingomonas subarctica clone GKS69 2.43.1.15.1.2.7102 OTU 2 seqs prokMSA_id:80924 AF468381.1 Arctic sea ice ARK9996 prokMSA_id:83904 AJ441010.1 lake microbial mat isolate str. R-9221 2.43.1.15.1.2.7108 OTU 1 seq prokMSA_id:38923 AF432337.1 template extracted sediment oil-contaminated nutrient amended beach microcosms; day 26 experiment clone 4%N-26d-5 proteobacterium 2.43.1.15.1.2.7110 OTU 7 seqs prokMSA_id:6293 AF025352.1 Sphingomonas sp. str. D16 prokMSA_id:36281 AB064271.1 Sphingomonas sp. str. KA1 prokMSA_id:57342 AY151394.1 Novosphingobium subarcticum LH128 prokMSA_id:71360 AF434172.1 Sphingomonas sp. str. AV6C prokMSA_id:77528 AY167828.1 Novosphingobium subarcticum str. SAFR-035 prokMSA_id:78207 AB074642.1 pea aphid symbiont clone APe9_4 prokMSA_id:108971 AY788898.1 Sphingomonas sp. str. tfd44 2.43.1.15.1.2.7121 OTU 10 seqs prokMSA_id:6241 X97776.1 Sphingomonas trueperi prokMSA_id:19856 AB033948.1 Sphingomonas sp. str. IFO 15495 prokMSA_id:21753 AB033946.1 Sphingomonas sp. str. IFO 15496 prokMSA_id:40384 AJ243751.1 Sphingomonas pituitosa prokMSA_id:47031 AB033947.1 Sphingomonas sp. str. IFO 15497 prokMSA_id:65321 AF503282.1 Sphingomonas sp. str. ATCC 31853 prokMSA_id:65322 AF503281.1 Sphingomonas sp. str. ATCC 31961 prokMSA_id:65323 AF503277.1 Sphingomonas sp. str. ATCC 21423 prokMSA_id:65327 AF503279.1 Sphingomonas sp. str. ATCC 31554 prokMSA_id:65329 AF503278.1 Sphingomonas elodea str. ATCC 31461 2.43.1.15.1.2.7132 OTU 1 seq prokMSA_id:18013 AJ009706.2 Sphingomonas sp. K101 2.43.1.15.1.2.7136 OTU 1 seq prokMSA_id:18607 AB070237.1 Novosphingobium tardaugens str. ARI-1 2.43.1.15.1.2.7155 OTU 1 seq prokMSA_id:58404 AB008815.1 str. MBIC3035 PC4 2.43.1.15.1.2.7165 OTU 1 seq prokMSA_id:77937 AB076396.1 Sphingomonas sp. str. IW3 2.43.1.15.1.2.7174 OTU 1 seq prokMSA_id:44980 AF408323.1 Sphingomonas sp. clone KL-2-4-7 2.43.1.15.1.2.7176 OTU 1 seq prokMSA_id:26262 AB076083.1 Japan:NaganoLake Suwa isolate str. 7CY 2.43.1.15.1.2.7183 OTU 1 seq prokMSA_id:79611 AF468353.1 Arctic sea ice ARK10016 2.43.1.15.1.2.7185 OTU 7 seqs prokMSA_id:32470 AF414579.1 clone P3OU-37 prokMSA_id:55502 AF506050.1 Sphingomonas sp. LCSAOTU29 prokMSA_id:60493 AF488649.1 Z14 prokMSA_id:60494 AF488650.1 Z15 prokMSA_id:63023 AY122601.1 uncontaminated on-site supply clone OSS-11 prokMSA_id:79271 AY187317.1 drinking-water biofilm clone csbio160302 prokMSA_id:83641 AJ557858.1 seawater 2.43.1.15.1.2.7215 OTU 1 seq prokMSA_id:50190 AF445712.1 travertine hot spring clone SM2B06 2.43.1.15.1.2.7218 OTU 1 seq prokMSA_id:50060 AJ427917.1 Sphingomonas sp. str. JS1 2.43.1.15.1.2.7235 OTU 1 seq prokMSA_id:82573 AF499911.1 human colonic mucosal biopsy clone ABLCf85 2.43.1.15.1.2.7278 OTU 1 seq prokMSA_id:6320 D13727.1 Sphingopyxis terrae 2.43.1.15.1.2.7285 OTU 11 seqs prokMSA_id:6326 AB022601.1 Sphingomonas sp. str. KT-1 prokMSA_id:6327 Z73631.1 Sphingomonas sp. prokMSA_id:6329 AB015049.1 Sphingomonas sp. str. MBIC3365 Y5 prokMSA_id:19973 AF145753.1 Sphingopyxis alaskensis str. RB2515 prokMSA_id:40084 AF378796.1 Sphingopyxis alaskensis str. AF01 prokMSA_id:42377 AF378795.1 Sphingopyxis alaskensis prokMSA_id:44192 AB033950.1 Sphingomonas sp. str. IFO 15917 prokMSA_id:60721 AF532188.1 enrichment clone MCAA3 prokMSA_id:66835 AF367204.1 Sphingopyxis chilensis str. S37 prokMSA_id:72044 AF145754.1 Sphingopyxis alaskensis str. RB2510 prokMSA_id:74035 AF181572.1 Sphingomonas sp. JRL-5 5 2.43.1.15.1.2.7289 OTU 1 seq prokMSA_id:32571 AY026948.1 Sphingomonas sp. str. ML1 2.43.1.15.1.2.7296 OTU 6 seqs prokMSA_id:6351 AB021493.1 Porphyrobacter sanguineus str. IAM 12620 prokMSA_id:6353 AB002654.1 deepest sea mud Mariana Trench clone prokMSA_id:24395 AB062105.1 Agrobacterium sanguineum str. ATCC 25660 prokMSA_id:39689 AB062106.1 Porphyrobacter sanguineus str. ATCC 25661 prokMSA_id:83716 AJ441007.1 lake microbial mat isolate str. R-9216 prokMSA_id:84218 AJ441013.1 lake microbial mat isolate str. R-9478 2.43.1.15.1.2.7319 OTU 1 seq prokMSA_id:58867 AF425996.1 Anabaena circinalis AWQC118C isolate str. UNSW1 2.43.1.15.1.2.7342 OTU 1 seq prokMSA_id:50200 AY038702.1 epilithon clone TAF-B92 2.43.1.15.1.2.7344 OTU 1 seq prokMSA_id:43717 AJ252588.1 rhizosphere soil RSI-21 2.43.1.15.1.2.7347 OTU 2 seqs prokMSA_id:21569 AF328172.1 clone KS21 prokMSA_id:37060 AF328165.1 clone KS11 2.43.1.15.1.2.7356 OTU 1 seq prokMSA_id:50700 AJ292591.1 PCB-polluted soil clone WD208 2.43.1.15.1.2.7357 OTU 1 seq prokMSA_id:73289 AY007681.1 marine isolate JP63.1 2.43.1.15.1.2.7369 OTU 5 seqs prokMSA_id:6234 AJ007800.1 Asticcacaulis excentricus str. ACM 1263 (T) prokMSA_id:6235 AJ007799.1 Asticcacaulis biprosthecium prokMSA_id:6236 AJ227812.1 Caulobacter leidyia str. ATCC 15260(T) prokMSA_id:6239 AJ007806.1 Caulobacter leidyia str. ACM 2487 (T) prokMSA_id:6240 AB008391.1 Caulobacter leidyia str. ATCC15260 2.43.1.15.1.2.7374 OTU 2 seqs prokMSA_id:70529 AF227857.1 environmental isolate 86356 prokMSA_id:73719 AF324199.2 Sphingomonas sp. V1 str. V21 2.43.1.15.1.2.7394 OTU 2 seqs prokMSA_id:6285 AB025012.1 Novosphingobium aromaticivorum prokMSA_id:6286 AB025014.1 Novosphingobium subterraneae 2.43.1.15.1.2.7402 OTU 1 seq prokMSA_id:34245 AB027691.1 Sphingomonas-like isolate str. B12 2.43.1.15.1.2.7404 OTU 4 seqs prokMSA_id:60514 AF410927.1 Sphingomonas sp. str. B18 prokMSA_id:69966 AY145544.1 dilution (10e-7) freshwater section Weser estuary isolate str. AP-6 AP-6 prokMSA_id:72895 AY145546.1 dilution (10e-7) freshwater section Weser estuary isolate str. AP-8 AP-8 prokMSA_id:103511 AJ620194.1 Sphingomonas sp. str. SaS2 2.43.1.15.1.2.7411 OTU 1 seq prokMSA_id:6222 D16146.1 Sphingomonas adhaesiva 2.43.1.15.1.2.7435 OTU 10 seqs prokMSA_id:28323 AF281032.1 Zymomonas mobilis str. ATCC29192 prokMSA_id:38516 AF281034.1 Zymomonas mobilis str. ATCC29191 prokMSA_id:39861 AF281033.1 Zymomonas mobilis prokMSA_id:43499 AF281031.1 Zymomonas mobilis prokMSA_id:47404 AF088897.1 Zymomonas mobilis str. ZM4 prokMSA_id:50955 AF117351.1 Zymomonas mobilis str. ZM4 prokMSA_id:111493 AE008692.1 Zymomonas ZM4 subsp. mobilis str. ZM4; ATCC 31821 prokMSA_id:112058 NC_006526.1 Zymomonas ZM4 subsp. mobilis str. ZM4; ATCC 31821 prokMSA_id:112494 AY670648.1 Zymomonas subsp. mobilis str. LMG 445 prokMSA_id:112656 AY670647.1 Zymomonas subsp. mobilis str. LMG 404 2.43.1.15.1.2.7440 OTU 56 seqs prokMSA_id:6154 D16148.1 Sphingomonas species prokMSA_id:6155 AF039168.1 Sphingomonas paucimobilis str. UT26 prokMSA_id:6157 X87164.1 "Sphingomonas flava" prokMSA_id:6163 X94100.1 Sphingomonas paucimobilis prokMSA_id:6165 AF025350.1 Sphingomonas sp. str. BRW2 prokMSA_id:6167 AF191022.1 Sphingomonas sp. str. CD prokMSA_id:6168 X87161.1 Sphingobium chlorophenolicum prokMSA_id:6176 X87162.1 Sphingomonas chlorophenolica prokMSA_id:6178 U37341.1 Sphingomonas paucimobilis prokMSA_id:6179 X87163.1 "Sphingomonas flava" prokMSA_id:6181 U52146.1 Sphingomonas CFO6 prokMSA_id:6182 AB022428.1 Sphingobium herbicidovorans prokMSA_id:6183 AB000106.1 Sphingomonas sp. str. VT1 prokMSA_id:24311 AF395036.1 Sphingomonas sp. str. G296-3 prokMSA_id:26964 AF335501.1 Sphingomonas sp. str. LB126 prokMSA_id:38158 Y12803.1 Sphingomonas agrestis str. HV3 prokMSA_id:39728 AF159257.2 Sphingomonas chungbukensis str. DJ77 prokMSA_id:41591 AB040739.1 [Sphingomonas] cloacae prokMSA_id:51138 AJ009708.2 Sphingobium sp. K40 prokMSA_id:55376 AY151392.1 Sphingomonas chungbukensis VM0440 prokMSA_id:67345 AF494538.1 Sphingomonas sp. str. BPC4 prokMSA_id:71130 AJ009709.2 Sphingomonas sp. K74 prokMSA_id:73215 AY151393.1 Sphingomonas cloacae LH227 prokMSA_id:74551 AF335468.1 Sphingomonas sp. str. VM506 prokMSA_id:88144 AB112465.1 Suiyo Seamount hydrothermal plume clone SUP27-27 prokMSA_id:88252 AY328570.1 drinking water system simulator clone HOClCi21 prokMSA_id:88345 AY328601.1 drinking water system simulator clone HOClCi52 prokMSA_id:88506 AB099632.1 Sphingomonas xenophaga str. AJ6 prokMSA_id:88512 AB099634.1 Sphingomonas xenophaga str. P1 prokMSA_id:88570 AY328612.1 drinking water system simulator clone HOClCi63 prokMSA_id:89076 AY328561.1 drinking water system simulator clone HOClCi12 prokMSA_id:89304 AY328603.1 drinking water system simulator clone HOClCi54 prokMSA_id:89410 AB099633.1 Sphingomonas xenophaga str. AJ8 prokMSA_id:89594 AY328583.1 drinking water system simulator clone HOClCi34 prokMSA_id:89642 AY328555.1 drinking water system simulator clone HOClCi6 prokMSA_id:89681 AY328577.1 drinking water system simulator clone HOClCi28 prokMSA_id:89964 AY328559.1 drinking water system simulator clone HOClCi10 prokMSA_id:90303 AY328563.1 drinking water system simulator clone HOClCi14 prokMSA_id:90395 AY277556.1 Sphingomonas sp. str. AGP2-1 prokMSA_id:90560 AY328611.1 drinking water system simulator clone HOClCi62 prokMSA_id:90586 AY328841.1 drinking water MB10 prokMSA_id:90665 AY328602.1 drinking water system simulator clone HOClCi53 prokMSA_id:90781 AF282616.1 Sphingomonas sp. str. KH3-2 prokMSA_id:93613 AY367017.1 Sphingomonas paucimobilis 12H6 prokMSA_id:94024 AY367015.1 Sphingomonas paucimobilis Sg5 prokMSA_id:94188 AY367016.1 Sphingomonas paucimobilis Sg6 prokMSA_id:101571 AY544996.1 Sphingobium herbicidovorans str. FA3g prokMSA_id:102181 AY699586.1 soil contaminated with polyaromatic hydrocarbons clone PHE7d9 prokMSA_id:102263 AY571825.1 hydrocarbon-contaminated soil clone 433E prokMSA_id:102875 AY519130.1 Sphingomonas paucimobilis str. Sp+ prokMSA_id:103900 AY702969.1 Sphingomonas sp. CFDS-1 prokMSA_id:104462 AB166883.1 Sphingomonas sp. str. T5-04 prokMSA_id:104840 AB187215.1 Sphingomonas sp. str. SS86 prokMSA_id:104964 AY328839.1 drinking water MB6 prokMSA_id:108046 AY771800.1 Sphingomonas sp. 16-1 prokMSA_id:108047 AY771801.1 Sphingomonas sp. 16-9 2.43.1.15.1.2.7445 OTU 9 seqs prokMSA_id:6313 D13722.1 Sphingomonas adhaesiva prokMSA_id:6328 AF131297.1 [Sphingomonas] taejonensis prokMSA_id:31367 AF327069.1 Sphingomonas sp. SA-3 prokMSA_id:45857 AJ416410.1 Sphingopyxis witflariensis prokMSA_id:68620 AY081981.1 atrazine-catabolizing microbial presence methanol clone KRA30+14 prokMSA_id:78445 AY177357.2 phenanthrene-degrading isolate str. M20 prokMSA_id:81691 AY212804.1 Sphingomonas sp. str. EVA17 prokMSA_id:103101 AY599670.1 fungal ascocarp clone Cl-2-TB2-II prokMSA_id:108760 AY796041.1 gold mine bore hole clone 47mm65 2.43.1.15.1.2.7461 OTU 1 seq prokMSA_id:69828 AY145545.1 dilution (10e-7) freshwater section Weser estuary isolate str. AP-7 AP-7 2.43.1.15.1.2.7470 OTU 1 seq prokMSA_id:78821 AB088760.1 Novosphingobium sp. str. J30 2.43.1.15.1.2.7482 OTU 1 seq prokMSA_id:76149 AJ518765.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-18 2.43.1.15.1.2.7509 OTU 2 seqs prokMSA_id:34996 AB074731.1 Japan:Lake Biwa isolate str. S-N(1)-8A prokMSA_id:50823 AB074728.1 Japan:Lake Biwa isolate str. S-N(1)-21B 2.43.1.15.1.2.7514 OTU 1 seq prokMSA_id:6158 U60172.1 Sphingobium chlorophenolicum str. ATCC 39723 2.43.1.15.1.2.7526 OTU 1 seq prokMSA_id:73393 AF423277.1 soil clone 565-2 2.43.1.15.1.2.7528 OTU 22 seqs prokMSA_id:6147 U37524.1 Sphingomonas yanoikuyae prokMSA_id:6148 D13728.1 Sphingobium yanoikuyae prokMSA_id:6160 U37525.1 Sphingomonas yanoikuyae prokMSA_id:6161 X85023.1 Sphingomonas yanoikuyae prokMSA_id:6169 AB025572.1 Sphingomonas sp. str. MBIC3992 Lo41 prokMSA_id:6171 D16145.1 Sphingobium yanoikuyae prokMSA_id:6172 X94099.1 Sphingomonas sp. prokMSA_id:6173 AJ224940.1 Sphingomonas sp. Koll-16 prokMSA_id:6174 X87165.1 Sphingomonas sp. prokMSA_id:6180 D13946.1 "Chromobacterium lividum" prokMSA_id:6186 X87167.1 Sphingomonas sp. prokMSA_id:6194 AB021416.1 Pseudomonas abikonensis str. IAM 12404T prokMSA_id:6198 U37346.1 Sphingomonas sp. prokMSA_id:42066 AB047364.1 Sphingobium amiense str. YT prokMSA_id:50339 AY047219.1 Sphingobium yanoikuyae prokMSA_id:56342 AF494099.1 Sphingomonas sp. str. KMG425 prokMSA_id:59708 AB091683.1 Sphingomonas sp. str. P2 prokMSA_id:70433 AF181571.1 Sphingomonas sp. JRL-4 4 prokMSA_id:81332 AY206698.1 Sphingomonas sp. str. AS 6330 prokMSA_id:84755 AB109749.1 Sphingobium yanoikuyae str. KF706 prokMSA_id:90506 AY328582.1 drinking water system simulator clone HOClCi33 prokMSA_id:109021 AY764287.1 Sphingomonas sp. str. BSAR-1 2.43.1.15.1.2.7532 OTU 1 seq prokMSA_id:6245 AF115500.1 Caulobacter sp. str. WCP2020S 2.43.1.15.1.2.7535 OTU 7 seqs prokMSA_id:6212 D13724.1 Sphingomonas parapaucimobilis prokMSA_id:6215 D16144.1 Sphingomonas paucimobilis prokMSA_id:6217 U20776.1 Sphingomonas paucimobilis str. ATCC 29837 prokMSA_id:6229 U37337.1 Sphingomonas paucimobilis prokMSA_id:23465 AF469338.1 clone 33-FL9B99 prokMSA_id:58866 AF425997.1 Anabaena circinalis AWQC118C isolate str. UNSW2 prokMSA_id:74840 AJ295690.1 Sphingomonas parapaucimobilis str. TzT-JG-2-6 2.43.1.15.1.2.7537 OTU 1 seq prokMSA_id:84022 AY250869.1 lichen-dominated Antarctic cryptoendolithic community clone FBP255 proteobacterium 2.43.1.15.1.2.7545 OTU 1 seq prokMSA_id:22164 AJ251638.2 Sphingomonas sp. str. SRS2 2.43.1.15.1.2.7548 OTU 1 seq prokMSA_id:6206 U87784.1 Afipia genosp. 13 str. G8991 2.43.1.15.1.2.7550 OTU 1 seq prokMSA_id:74174 AF423293.1 soil clone 768-2 2.43.1.15.1.2.7555 OTU 1 seq prokMSA_id:20557 AJ307938.1 derived microbial 'pearl'- community clone sipK48 2.43.1.15.1.2.7570 OTU 1 seq prokMSA_id:34362 AF423289.1 soil clone 739-2 2.43.1.15.1.2.7576 OTU 5 seqs prokMSA_id:6287 AB023290.1 Sphingomonas sp. str. MBIC4193 KL7 prokMSA_id:6296 AB025013.1 Novosphingobium stygiae prokMSA_id:28794 AF235996.1 isolate str. F06021 prokMSA_id:44107 U20775.2 Novosphingobium stygiae prokMSA_id:51683 AJ289994.1 Germany: Lake Fuchskuhle north basin clone FukuN22 FukuN22 2.43.1.15.1.2.7582 OTU 1 seq prokMSA_id:6295 AF170734.1 Sphingomonas sp. str. QSSC1-14 2.43.1.15.1.2.7597 OTU 1 seq prokMSA_id:6193 AF177917.1 Sphingomonas sp. str. DhA-95 2.43.1.15.1.2.7606 OTU 2 seqs prokMSA_id:55355 AB084247.1 Sphingomonas sp. str. Y2 prokMSA_id:101429 AB159609.1 Sphingomonas sp. str. B9 2.43.1.15.1.2.7607 OTU 1 seq prokMSA_id:40332 AJ000918.2 Sphingomonas sp. str. K6 2.43.1.15.1.2.7624 OTU 7 seqs prokMSA_id:6221 AF184221.1 Sphingomonas sp. str. Ant20 prokMSA_id:22537 AF395031.1 Sphingomonas sp. str. M3C203B-B prokMSA_id:71383 AJ429240.1 Sphingomonas aerolata str. NW12 prokMSA_id:91185 AY336550.1 Sphingomonas sp. str. pfB21 prokMSA_id:93239 AY364031.1 Sphingomonas sp. iEIV10 prokMSA_id:93433 AJ581618.1 Soil collected near non-ferrous metal smelting factory KCM clone KCM-C-8 prokMSA_id:94653 AJ583164.1 ground water monitoring deep-well at radioactive waste disposal site clone S15B-MN112 2.43.1.15.1.2.7643 OTU 1 seq prokMSA_id:36134 Z88570.1 HNSS12 2.43.1.15.2 Unclassified 10 seqs 2.43.1.15.2.1 sf_1 10 seqs 2.43.1.15.2.1.6653 OTU 9 seqs prokMSA_id:65471 AY102311.1 heavy metal-contaminated soil clone a13104 prokMSA_id:74534 AY102315.1 heavy metal-contaminated soil clone a13108 prokMSA_id:75048 AJ532708.1 uranium mining waste pile clone JG34-KF-388 proteobacterium prokMSA_id:77510 AY167833.1 Sphingomonas sp. str. SAFR-028 prokMSA_id:93185 AY367027.1 Sphingomonas sp. As2-1 prokMSA_id:99674 AY439192.1 soil clone MeCl 62 prokMSA_id:108385 AY785128.1 Kaistobacter koreensis str. PB229 prokMSA_id:111141 AJ715526.1 Sphingomonas sp. CHY-1 prokMSA_id:114397 AY922043.1 farm soil adjacent to silage storage bunker clone AKYG624 2.43.1.15.2.1.7052 OTU 1 seq prokMSA_id:19427 AF418947.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTB9 2.43.1.16 Unclassified 210 seqs 2.43.1.16.1 Unclassified 210 seqs 2.43.1.16.1.1 sf_2 3 seqs 2.43.1.16.1.1.6697 OTU 1 seq prokMSA_id:78324 AB089090.1 termite gut homogenate clone Rs-D84 proteobacterium 2.43.1.16.1.1.7188 OTU 1 seq prokMSA_id:77616 AB089085.1 termite gut homogenate clone Rs-B50 proteobacterium 2.43.1.16.1.1.7227 OTU 1 seq prokMSA_id:5397 AF001764.1 rumen clone RF32 2.43.1.16.1.2 sf_6 206 seqs 2.43.1.16.1.2.1011 OTU 1 seq prokMSA_id:11287 X80996.1 "Magnetic coccus" 2.43.1.16.1.2.6635 OTU 3 seqs prokMSA_id:44127 AF337887.2 gold mine clone D33 prokMSA_id:75443 AJ532709.1 uranium mining waste pile clone JG34-KF-416 prokMSA_id:76050 AJ519651.1 uranium mill tailings soil clone GuBH2-AD-10 2.43.1.16.1.2.6643 OTU 1 seq prokMSA_id:5920 AF142821.1 clone BURTON-1 2.43.1.16.1.2.6665 OTU 1 seq prokMSA_id:49166 AF143830.1 hydrocarbon-degrading consortium clone 4-Org2-22 2.43.1.16.1.2.6685 OTU 2 seqs prokMSA_id:25178 AF186698.1 Pfiesteria-complex dinoflagellate (CCMP1828) isolate str. MA2802 prokMSA_id:32446 AF186697.1 directly Pfiesteria-complex dinoflagellate (CCMP1828); similar to Agrobacterium str. LMG11915 clone MA2801 2.43.1.16.1.2.6688 OTU 1 seq prokMSA_id:5846 AF142857.1 clone BURTON-39 2.43.1.16.1.2.6689 OTU 1 seq prokMSA_id:27926 AF143828.1 hydrocarbon-degrading consortium clone 4-Org2-4 2.43.1.16.1.2.6694 OTU 1 seq prokMSA_id:56033 AF523879.1 forested wetland clone RCP2-92 2.43.1.16.1.2.6698 OTU 3 seqs prokMSA_id:4584 AF001637.1 related to SAR116 clone OCS24 prokMSA_id:4585 U70678.1 Cape Hatteras picoplankton clone OM25 prokMSA_id:68995 AF268236.2 marine bacterioplankton clone EBAC37G09N 2.43.1.16.1.2.6703 OTU 1 seq prokMSA_id:91865 AY337602.2 agricultural soil isolate str. PX3.14 2.43.1.16.1.2.6710 OTU 2 seqs prokMSA_id:4573 U70679.2 Cape Hatteras picoplankton clone OM38 prokMSA_id:17396 AF353233.1 marine clone Arctic96A-18 2.43.1.16.1.2.6717 OTU 3 seqs prokMSA_id:4512 AB000479.1 Aquaspirillum subsp. peregrinum str. IFO 14922 prokMSA_id:4513 AB000480.1 Aquaspirillum peregrinum subsp. integrum str. IFO 13617 prokMSA_id:56046 AB074521.1 Aquaspirillum peregrinum subsp. integrum str. IAM 14946 subsp. 2.43.1.16.1.2.6754 OTU 1 seq prokMSA_id:54657 AF151276.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-450-1 2.43.1.16.1.2.6776 OTU 1 seq prokMSA_id:83629 AY221078.1 Mammoth cave clone CCU22 2.43.1.16.1.2.6819 OTU 1 seq prokMSA_id:33982 AF424282.1 clone MERTZ_0CM_210 2.43.1.16.1.2.6825 OTU 1 seq prokMSA_id:53064 AF151280.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-450-5 2.43.1.16.1.2.6844 OTU 1 seq prokMSA_id:32348 AJ292602.1 PCB-polluted soil clone WD271 2.43.1.16.1.2.6845 OTU 1 seq prokMSA_id:49637 AF235999.1 isolate str. A0838 2.43.1.16.1.2.6858 OTU 1 seq prokMSA_id:25420 AF245619.1 algal bloom clone NAC1-6 2.43.1.16.1.2.6863 OTU 1 seq prokMSA_id:50973 AF293000.1 ferromanganous micronodule clone MNG3 2.43.1.16.1.2.6884 OTU 1 seq prokMSA_id:53491 AF151279.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-450-4 2.43.1.16.1.2.6892 OTU 1 seq prokMSA_id:32800 AF314432.1 aerobic phosphorus-removal ecosystem clone PHOS-HE47 2.43.1.16.1.2.6898 OTU 1 seq prokMSA_id:65465 AY102320.1 heavy metal-contaminated soil clone a13113 2.43.1.16.1.2.6912 OTU 9 seqs prokMSA_id:26810 AF227158.1 Achromobacter sp. LMG 5410 str. LMG5410 prokMSA_id:31969 AJ314748.1 isolate C6/8 clone prokMSA_id:39707 AJ314749.1 isolate C6/17 clone prokMSA_id:47270 AJ400704.1 Pannonibacter phragmitetus C6/19 prokMSA_id:70672 AF227159.1 Achromobacter sp. LMG 5431 str. LMG5431 prokMSA_id:72136 AF227160.1 Achromobacter sp. LMG 5430 str. LMG5430 prokMSA_id:74042 AF227157.1 Achromobacter sp. LMG 5411 str. LMG5411 prokMSA_id:76483 AY159148.1 microbial biofilm with membrane-based water purification process clone MF_clone_123 prokMSA_id:90998 AY345464.1 Lake Kauhako water isolate str. K56 2.43.1.16.1.2.6918 OTU 11 seqs prokMSA_id:63269 AF523950.1 forested wetland clone FW93 prokMSA_id:78724 AJ536857.1 uranium mining waste pile soil sample clone JG30-KF-C3 proteobacterium prokMSA_id:93769 AJ581616.1 Soil collected near non-ferrous metal smelting factory KCM clone KCM-C-45 prokMSA_id:101876 AY395352.1 pasture soil clone EB1033 prokMSA_id:112806 AY913376.1 forest soil clone DUNssu169 prokMSA_id:113512 AY913593.1 forest soil clone DUNssu452 prokMSA_id:113692 AY913408.1 forest soil clone DUNssu202 prokMSA_id:113710 AY913244.1 forest soil clone DUNssu024 prokMSA_id:113965 AY913608.1 forest soil clone DUNssu468 prokMSA_id:114037 AY913278.1 forest soil clone DUNssu056 prokMSA_id:114130 AY913411.1 forest soil clone DUNssu206 2.43.1.16.1.2.6920 OTU 10 seqs prokMSA_id:4601 AB012864.1 sponge isolate str. MBIC3368 prokMSA_id:27269 AF295099.1 symbiont prokMSA_id:36381 AF218241.1 isolate str. MBIC3368 prokMSA_id:60397 AF513441.1 isolate str. LA33B prokMSA_id:102581 AB175663.1 Pseudovibrio sp. str. F423 prokMSA_id:105278 AB112826.1 Pseudovibrio sp. str. MKT84 prokMSA_id:105425 AB112827.1 Pseudovibrio sp. str. MKT94 prokMSA_id:105935 AY654776.1 Oculina mucus isolate 33 prokMSA_id:107472 AY486423.1 Pseudovibrio denitrificans str. DN34 prokMSA_id:108719 AY762960.1 complete isolate str. Z143-1 2.43.1.16.1.2.6925 OTU 1 seq prokMSA_id:5088 AF146237.1 clone CLEAR-13 2.43.1.16.1.2.6926 OTU 2 seqs prokMSA_id:61741 AJ416171.1 Netherlands:Lake IJssel clone Urk0-05 prokMSA_id:67831 AY082476.1 clone 44a-U1-25 2.43.1.16.1.2.6946 OTU 1 seq prokMSA_id:85004 AY221043.1 Mammoth cave clone CCM12a 2.43.1.16.1.2.6952 OTU 3 seqs prokMSA_id:4600 AB012760.1 mangrove root isolate str. MBIC3366 prokMSA_id:4608 AB015896.1 str. MBIC3865 hP29-3 prokMSA_id:53790 AF194379.1 brown tide algal CCMP1784 isolate str. kbc11 2.43.1.16.1.2.6954 OTU 3 seqs prokMSA_id:31584 Y15347.1 Paracoccus sp. PRLISY02 prokMSA_id:35391 Y15338.1 Bartonella sp. PRLIST01 prokMSA_id:41538 Y15344.1 PRLIST07 2.43.1.16.1.2.6956 OTU 1 seq prokMSA_id:4520 AF159663.1 related to 2.43.1.16.1.2.6970 OTU 1 seq prokMSA_id:47562 AJ252698.1 Rhizosphere soil RSC-II-82 () clone RSC-II-82 2.43.1.16.1.2.6983 OTU 1 seq prokMSA_id:26167 AF194375.1 molecular isolate; collection August clone kpa92 2.43.1.16.1.2.6986 OTU 2 seqs prokMSA_id:60654 AF406518.1 bacterioplankton clone AEGEAN_167 prokMSA_id:60655 AF406517.1 bacterioplankton clone AEGEAN_155 2.43.1.16.1.2.6987 OTU 1 seq prokMSA_id:64891 AY095893.1 2.43.1.16.1.2.6992 OTU 2 seqs prokMSA_id:26912 AJ295647.1 uranium mining waste pile clone KF-JG30-B12 KF-JG30-B12 prokMSA_id:73222 AJ295646.1 uranium mining waste pile clone KF-JG30-B10 KF-JG30-B10 2.43.1.16.1.2.6993 OTU 1 seq prokMSA_id:4574 U70683.1 Cape Hatteras picoplankton clone OM75 2.43.1.16.1.2.6996 OTU 1 seq prokMSA_id:32816 AF424293.1 clone MERTZ_21CM_168 2.43.1.16.1.2.7013 OTU 1 seq prokMSA_id:71591 AF143823.1 hydrocarbon-degrading consortium clone 4-Org1-36 2.43.1.16.1.2.7015 OTU 1 seq prokMSA_id:38570 AF328178.1 clone KS29 2.43.1.16.1.2.7034 OTU 1 seq prokMSA_id:68661 AJ439369.1 Caulobacter sp. WRs-1 2.43.1.16.1.2.7107 OTU 12 seqs prokMSA_id:4599 AB025419.1 str. MBIC3993 Lo4621 prokMSA_id:4604 D88520.1 Stappia aggregata prokMSA_id:4606 Y10914.1 species specific host PT-5 .tamarense prokMSA_id:4607 Y10915.1 species specific host CU-1 .tamarense prokMSA_id:4610 AB023435.1 str. MBIC1535 W181-1 prokMSA_id:42788 AF246615.1 Crassostrea virginica symbiont str. CV902-700 symbiont prokMSA_id:70630 AY007682.1 marine isolate JP22.1 prokMSA_id:82237 AY217769.1 Agrobacterium sp. str. SP25 prokMSA_id:88655 AY307927.1 Stappia sp. str. M8 prokMSA_id:91003 AY345441.1 Lake Kauhako water isolate str. K2-26 prokMSA_id:99315 AY639889.1 Stappia aggregata str. CHLG 11 prokMSA_id:103001 AF246614.1 Crassostrea virginica symbiont str. CV812-530 2.43.1.16.1.2.7137 OTU 2 seqs prokMSA_id:4575 D45202.1 Oleomonas sagaranensis str. HD-1 prokMSA_id:79172 AY187896.1 mine water clone I13 2.43.1.16.1.2.7138 OTU 1 seq prokMSA_id:47933 AF445724.1 travertine hot spring clone SM2D12 2.43.1.16.1.2.7148 OTU 2 seqs prokMSA_id:45257 AF391978.1 thermal soil clone YNPFFP57 prokMSA_id:45882 AF391979.1 thermal soil clone YNPFFP3 2.43.1.16.1.2.7154 OTU 1 seq prokMSA_id:4940 X97080.1 species (isolate TM28) clone 2.43.1.16.1.2.7166 OTU 1 seq prokMSA_id:72005 AF143822.1 hydrocarbon-degrading consortium clone 4-Org1-14 2.43.1.16.1.2.7170 OTU 1 seq prokMSA_id:46020 AF236002.1 isolate str. A0839 2.43.1.16.1.2.7175 OTU 26 seqs prokMSA_id:16678 AB054177.1 marine sponge clone HOC43 prokMSA_id:17000 AB054182.1 marine sponge clone HOC48 prokMSA_id:20547 AB054176.1 marine sponge clone HOC42 prokMSA_id:21146 AB054138.1 marine sponge clone HOC4 prokMSA_id:22043 AB054178.1 marine sponge clone HOC44 prokMSA_id:22342 AB054140.1 marine sponge clone HOC6 prokMSA_id:23317 AB054158.1 marine sponge clone HOC24 prokMSA_id:24176 AB054166.1 marine sponge clone HOC32 prokMSA_id:24637 AB054142.1 marine sponge clone HOC8 prokMSA_id:26396 AB054151.1 marine sponge clone HOC17 prokMSA_id:26958 AB054160.1 marine sponge clone HOC26 prokMSA_id:31227 AB054141.1 marine sponge clone HOC7 prokMSA_id:34613 AB054144.1 marine sponge clone HOC10 prokMSA_id:36213 AB054154.1 marine sponge clone HOC20 prokMSA_id:36320 AB054179.1 marine sponge clone HOC45 prokMSA_id:36723 AB054147.1 marine sponge clone HOC13 prokMSA_id:40299 AB054152.1 marine sponge clone HOC18 prokMSA_id:40336 AB054150.1 marine sponge clone HOC16 prokMSA_id:41079 AB054153.1 marine sponge clone HOC19 prokMSA_id:42614 AB054149.1 marine sponge clone HOC15 prokMSA_id:43501 AB054148.1 marine sponge clone HOC14 prokMSA_id:45239 AB054164.1 marine sponge clone HOC30 prokMSA_id:45712 AB054169.1 marine sponge clone HOC35 prokMSA_id:49588 AB054135.1 marine sponge clone HOC1 prokMSA_id:49607 AB054145.1 marine sponge clone HOC11 prokMSA_id:51928 AB054143.1 marine sponge clone HOC9 2.43.1.16.1.2.7177 OTU 1 seq prokMSA_id:19713 U87512.1 2.43.1.16.1.2.7179 OTU 1 seq prokMSA_id:46623 AF422655.1 TCE-sediment clone d064 2.43.1.16.1.2.7196 OTU 10 seqs prokMSA_id:4920 AF001638.1 related to SAR116 clone OCS126 prokMSA_id:30120 Z88591.1 HRV39 prokMSA_id:32937 AF245641.1 algal bloom clone NAC11-16 prokMSA_id:41962 AJ400342.1 f cytometric sorted marine sample subpopulation 1 clone ZD0209 bacterium prokMSA_id:68992 AY033298.1 marine bacterioplankton clone MB11B03 prokMSA_id:72433 Z88583.1 HRV6 prokMSA_id:79431 AF382141.1 bacterioplankton clone ZA3446c prokMSA_id:93117 AY354816.1 coastal seawater during phytoplankton bloom clone PLY-P1-97 prokMSA_id:107051 AY627381.1 marine clone AY627381 prokMSA_id:109456 AY700630.1 Australia: Great Barrier Reef clone PDM-OTU14 2.43.1.16.1.2.7200 OTU 1 seq prokMSA_id:32545 Z88590.2 HRV35 2.43.1.16.1.2.7207 OTU 1 seq prokMSA_id:47123 AF194378.1 molecular isolate; brown tide algal CCMP1784 clone kpc47rc 2.43.1.16.1.2.7221 OTU 1 seq prokMSA_id:32425 AF424281.1 clone MERTZ_0CM_187 2.43.1.16.1.2.7229 OTU 1 seq prokMSA_id:61821 AF529343.1 PCE-contaminated site clone CLi8 2.43.1.16.1.2.7240 OTU 1 seq prokMSA_id:48275 AF422580.1 clone t005 2.43.1.16.1.2.7248 OTU 1 seq prokMSA_id:70396 AF280850.1 bioreactor clone mle1-13 2.43.1.16.1.2.7252 OTU 1 seq prokMSA_id:60656 AF406516.1 bacterioplankton clone AEGEAN_108 2.43.1.16.1.2.7258 OTU 1 seq prokMSA_id:54614 AF151245.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone B-015-5 2.43.1.16.1.2.7286 OTU 1 seq prokMSA_id:50080 AF143833.1 hydrocarbon-degrading consortium clone 4-Org2-27 2.43.1.16.1.2.7307 OTU 1 seq prokMSA_id:50928 AF194377.1 molecular isolate; collection July clone kpj324rc 2.43.1.16.1.2.7312 OTU 1 seq prokMSA_id:23417 AF434963.1 sponge symbiont RSWS1 clone 2.43.1.16.1.2.7314 OTU 2 seqs prokMSA_id:60853 AY135924.1 clone SG2-127 prokMSA_id:111797 AF236001.1 isolate str. A0904 2.43.1.16.1.2.7340 OTU 1 seq prokMSA_id:78776 AJ536878.1 uranium mining waste pile soil sample clone JG30-KF-AS50 2.43.1.16.1.2.7368 OTU 1 seq prokMSA_id:64286 AY040361.1 pEMT1::lacZ transconjugant isolate str. LMG 20591 LMG 2.43.1.16.1.2.7370 OTU 1 seq prokMSA_id:85551 AY221059.1 Mammoth cave clone CCM24a 2.43.1.16.1.2.7377 OTU 1 seq prokMSA_id:81029 AY192273.1 Rocky Mountain alpine soil clone W2b-8C 2.43.1.16.1.2.7399 OTU 1 seq prokMSA_id:20378 AF234728.1 sludge clone A20 2.43.1.16.1.2.7406 OTU 5 seqs prokMSA_id:17111 AF234696.1 sludge clone H4 prokMSA_id:44246 AF234692.1 sludge clone H29 prokMSA_id:46308 AF234717.1 sludge clone S7 prokMSA_id:75034 AJ518763.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-6 prokMSA_id:76546 AJ518779.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-130 2.43.1.16.1.2.7410 OTU 2 seqs prokMSA_id:29896 AF255640.1 EBPR sludge clone Ebpr11 prokMSA_id:44677 AF255630.1 EBPR sludge clone Ebpr9 2.43.1.16.1.2.7421 OTU 1 seq prokMSA_id:54561 AF151274.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-150-4 2.43.1.16.1.2.7424 OTU 1 seq prokMSA_id:4539 AF104473.1 Olavius loisae endosymbiont 2 2.43.1.16.1.2.7425 OTU 1 seq prokMSA_id:50466 AF418951.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTC6 2.43.1.16.1.2.7451 OTU 1 seq prokMSA_id:26047 AF424273.1 clone MERTZ_2CM_84 2.43.1.16.1.2.7455 OTU 1 seq prokMSA_id:5067 AB009205.1 rumen clone RFN49 2.43.1.16.1.2.7463 OTU 2 seqs prokMSA_id:38715 AF445091.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc11 prokMSA_id:41433 AF445093.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc19 2.43.1.16.1.2.7474 OTU 1 seq prokMSA_id:5919 AF050532.1 contaminated aquifer clone WCHA1-65 2.43.1.16.1.2.7492 OTU 1 seq prokMSA_id:37324 AF469345.1 clone CTD44B 2.43.1.16.1.2.7496 OTU 1 seq prokMSA_id:4550 AF159661.1 related to Rhodospirillum group 2.43.1.16.1.2.7510 OTU 7 seqs prokMSA_id:4583 AF001636.1 related to SAR116 clone OCS28 prokMSA_id:68978 AY033319.1 marine bacterioplankton clone MB13G10 prokMSA_id:68980 AY033316.1 marine bacterioplankton clone MB12F11 prokMSA_id:68981 AY033313.1 marine bacterioplankton clone MB12C06 prokMSA_id:68991 AY033300.1 marine bacterioplankton clone MB11B10 prokMSA_id:103116 AY033315.1 marine bacterioplankton clone MB12D10 prokMSA_id:106944 AY627368.1 marine clone AY627368 2.43.1.16.1.2.7516 OTU 1 seq prokMSA_id:4554 X68470.1 MC 77 2.43.1.16.1.2.7519 OTU 1 seq prokMSA_id:72555 AJ240913.1 5' clone CHAB-III-8 2.43.1.16.1.2.7520 OTU 1 seq prokMSA_id:5159 AF159657.1 related to 2.43.1.16.1.2.7521 OTU 1 seq prokMSA_id:32841 AF179678.1 Defluvicoccus vanus str. pilsen; Ben114 2.43.1.16.1.2.7534 OTU 1 seq prokMSA_id:29952 AF234689.1 sludge clone H6 2.43.1.16.1.2.7538 OTU 1 seq prokMSA_id:33613 AF465655.1 geothermal soil clone YNPRH85B 2.43.1.16.1.2.7551 OTU 1 seq prokMSA_id:52333 AF424272.1 clone MERTZ_2CM_62 2.43.1.16.1.2.7554 OTU 1 seq prokMSA_id:54935 AF151246.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M2-025-1 2.43.1.16.1.2.7559 OTU 1 seq prokMSA_id:36094 AF440705.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-17 2.43.1.16.1.2.7567 OTU 1 seq prokMSA_id:5504 AB015579.1 deep-sea sediment clone BD7-3 2.43.1.16.1.2.7572 OTU 1 seq prokMSA_id:76145 AJ519653.1 uranium mill tailings soil clone GuBH2-AG-57 2.43.1.16.1.2.7575 OTU 1 seq prokMSA_id:75527 AJ518777.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-119 2.43.1.16.1.2.7583 OTU 2 seqs prokMSA_id:4598 D88525.1 Stappia stellulata prokMSA_id:4609 AB010864.1 strain HTB015 clone HTB015 2.43.1.16.1.2.7599 OTU 1 seq prokMSA_id:5468 AB015523.1 deep-sea sediment clone BD1-14 2.43.1.16.1.2.7610 OTU 1 seq prokMSA_id:40191 AJ295648.1 uranium mining waste pile clone KF-JG30-C23 2.43.1.16.1.2.7613 OTU 1 seq prokMSA_id:19385 AJ292610.1 PCB-polluted soil clone WD2107 2.43.1.16.1.2.7614 OTU 1 seq prokMSA_id:54028 AF424295.1 clone MERTZ_21CM_255 2.43.1.16.1.2.7622 OTU 1 seq prokMSA_id:43432 AJ319724.1 Haplosporidium sp. endosymbiont AbFoot 2.43.1.16.1.2.7647 OTU 1 seq prokMSA_id:76633 AJ519652.1 uranium mill tailings soil clone GuBH2-AD-23 2.43.1.16.1.2.7652 OTU 1 seq prokMSA_id:27559 AF324207.1 clone pA419 2.43.1.16.1.2.8780 OTU 1 seq prokMSA_id:20181 AJ296549.1 uranium mining mill tailing clone GR-296.II.89 GR-296.II.89 2.43.1.16.1.3 sf_7 1 seq 2.43.1.16.1.3.7633 OTU 1 seq prokMSA_id:39904 AF469358.1 clone CTD26B 2.43.1.17 Verorhodospirilla 17 seqs 2.43.1.17.1 Rhodospirillum 4 seqs 2.43.1.17.1.1 sf_1 4 seqs 2.43.1.17.1.1.7198 OTU 2 seqs prokMSA_id:4516 D30777.1 Rhodospirillum photometricum prokMSA_id:68790 AF487434.1 Rhodospirillum photometricum str. WSSB3 2.43.1.17.1.1.7628 OTU 2 seqs prokMSA_id:4508 D30778.1 Rhodospirillum rubrum prokMSA_id:4511 X87278.1 Rhodospirillum rubrum 2.43.1.17.2 Unclassified 13 seqs 2.43.1.17.2.1 sf_1 13 seqs 2.43.1.17.2.1.6740 OTU 1 seq prokMSA_id:55857 AJ298879.1 Roseospira marina str. CE2105 2.43.1.17.2.1.6806 OTU 1 seq prokMSA_id:78030 AJ298880.1 Roseospira navarrensis str. SE3104 2.43.1.17.2.1.6881 OTU 1 seq prokMSA_id:4509 X99671.1 Rhodospira trueperi 2.43.1.17.2.1.6976 OTU 2 seqs prokMSA_id:43239 AF411851.1 Azospirillum sp. str. 5C prokMSA_id:45811 AF413109.1 Azospirillum sp. str. 5C 2.43.1.17.2.1.7109 OTU 6 seqs prokMSA_id:4514 AB024595.1 str. MBIC1474 sm8-2 prokMSA_id:20957 AF143820.1 hydrocarbon-degrading consortium clone 4-Org1-12 prokMSA_id:80090 AY189744.1 diesel-polluted Bohai Gulf isolate str. B-4 B-4 prokMSA_id:80223 AY189753.1 diesel-polluted Bohai Gulf isolate str. M-5 M-5 prokMSA_id:112782 AY922200.1 grey whale bone Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131633 prokMSA_id:114409 AY922217.1 orange microbial mat on grey whale carcass Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131710 2.43.1.17.2.1.7393 OTU 1 seq prokMSA_id:5137 AB015246.1 deepest cold-seep area Japan Trench clone JTB260 proteobacterium 2.43.1.17.2.1.7573 OTU 1 seq prokMSA_id:77884 AJ401208.1 Roseospira thiosulfatophila AT2115 2.43.1.2 Azospirillales 32 seqs 2.43.1.2.1 Azospirillaceae 14 seqs 2.43.1.2.1.1 sf_1 14 seqs 2.43.1.2.1.1.6687 OTU 1 seq prokMSA_id:42220 AB049111.1 Azospirillum sp. str. B510 2.43.1.2.1.1.6869 OTU 1 seq prokMSA_id:63342 AY118222.1 Azospirillum sp. str. Mat2-1a 2.43.1.2.1.1.6959 OTU 2 seqs prokMSA_id:4589 D12701.1 Rhodocista cetenaria prokMSA_id:69358 AF523824.1 Rhodocista pekingensis str. 3-p 2.43.1.2.1.1.7058 OTU 1 seq prokMSA_id:4586 AF170353.1 Azospirillum sp. str. TTI 2.43.1.2.1.1.7171 OTU 2 seqs prokMSA_id:4549 Z29623.1 Azospirillum species prokMSA_id:4555 Z29637.1 Azospirillum species 2.43.1.2.1.1.7464 OTU 1 seq prokMSA_id:4545 Z29583.1 Azospirillum irakense 2.43.1.2.1.1.7467 OTU 1 seq prokMSA_id:4546 X92464.1 Azospirillum sp. str. ASP-1 2.43.1.2.1.1.7469 OTU 1 seq prokMSA_id:4547 Z29616.1 Azospirillum amazonense 2.43.1.2.1.1.7507 OTU 1 seq prokMSA_id:4552 X79728.1 Azospirillum sp. 2.43.1.2.1.1.7539 OTU 2 seqs prokMSA_id:77815 AJ401204.1 Rhodocista sp. AT2107 prokMSA_id:78339 AJ401217.1 Rhodocista sp. AR2107 2.43.1.2.1.1.7563 OTU 1 seq prokMSA_id:41918 AB049109.1 Azospirillum sp. str. B52 2.43.1.2.2 Magnetospirillaceae 13 seqs 2.43.1.2.2.1 sf_1 13 seqs 2.43.1.2.2.1.6922 OTU 1 seq prokMSA_id:78316 AY171615.1 Dechlorospirillum sp. str. SN1 2.43.1.2.2.1.6998 OTU 1 seq prokMSA_id:4529 AF170352.1 Dechlorospirillum sp. str. WD 2.43.1.2.2.1.7412 OTU 1 seq prokMSA_id:4535 D14433.1 Phaeospirillum fulvum 2.43.1.2.2.1.7418 OTU 2 seqs prokMSA_id:4530 Y17389.1 Magnetospirillum sp. str. MSM-3 prokMSA_id:4531 Y17390.1 Magnetospirillum sp. str. MSM-4 2.43.1.2.2.1.7561 OTU 8 seqs prokMSA_id:4518 M58171.1 Magnetospirillum magnetotacticum prokMSA_id:4522 Y17391.1 Magnetospirillum sp. str. MSM-6 prokMSA_id:4524 Y10110.1 Magnetospirillum magnetotacticum prokMSA_id:4525 D17514.1 Magnetospirillum sp. prokMSA_id:4526 D17515.1 Magnetospirillum species prokMSA_id:35227 AB033746.2 Magnetospirillum sp. str. CC-26 prokMSA_id:111088 AJ863153.1 Magnetospirillum sp. str. CF20 prokMSA_id:111126 AJ863154.1 Magnetospirillum sp. str. CF21 2.43.1.2.3 Unclassified 5 seqs 2.43.1.2.3.1 sf_1 5 seqs 2.43.1.2.3.1.6626 OTU 1 seq prokMSA_id:30490 AJ292608.1 PCB-polluted soil clone WD2103 2.43.1.2.3.1.6732 OTU 1 seq prokMSA_id:58862 AF426002.1 Anabaena circinalis AWQC118C isolate str. UNSW7 2.43.1.2.3.1.6905 OTU 1 seq prokMSA_id:34409 AJ244796.1 Sepia officinalis symbiont 2.43.1.2.3.1.7400 OTU 1 seq prokMSA_id:77302 AF524861.1 sphagnum peat bog clone K-5b5 2.43.1.2.3.1.7632 OTU 1 seq prokMSA_id:37406 AJ292593.1 PCB-polluted soil clone WD229 2.43.1.3 Bradyrhizobiales 780 seqs 2.43.1.3.1 Beijerinck/Rhodoplan/Methylocyst 262 seqs 2.43.1.3.1.1 sf_3 262 seqs 2.43.1.3.1.1.6625 OTU 1 seq prokMSA_id:4735 M95664.1 Methylosinus species 2.43.1.3.1.1.6645 OTU 1 seq prokMSA_id:32333 AF200697.1 13C- extracted 13C-methanol exposed soil clone UP3 proteobacterium 2.43.1.3.1.1.6651 OTU 162 seqs prokMSA_id:4681 AF165267.1 pasture soil clone HPS-64 prokMSA_id:4743 AF150786.1 Methylosinus sp. str. LW2 prokMSA_id:4744 AF150781.1 Lake Washington sediment clone pAMC459 prokMSA_id:4745 AF150780.1 Lake Washington sediment clone pAMC451 prokMSA_id:4746 AF150779.1 Lake Washington sediment clone pAMC447 prokMSA_id:4755 AB015608.1 Methylocystis sp. str. EB-1 prokMSA_id:4759 M59060.1 Beijerinckia indica prokMSA_id:18709 AF379689.1 brackish surface water with Mn(II)-oxidizing capacity clone SL14 prokMSA_id:18717 AF283238.1 rice field soil clone prokMSA_id:20054 AF358023.1 clone LO13.9 prokMSA_id:21038 AJ289931.1 Russia: Lake Baikal clone 1204-53l prokMSA_id:27605 AJ007647.1 4404-8 clone 1404-8 prokMSA_id:43530 AJ290032.1 Austria: Lake Gossenkoellesee clone GKS2-215 prokMSA_id:47357 U85157.1 Uncultivated organism integrated epilimnetic Moss Lake NY USA; member -1 clone ACK-M37 prokMSA_id:48693 U85161.1 Uncultivated organism integrated epilimnetic Dart's Lake NY USA; member -1 clone ACK-DE48 prokMSA_id:50497 AB040501.1 Type II methanotroph clone metano-II prokMSA_id:52053 AF292996.1 ferromanganous micronodule clone MNF4 prokMSA_id:54326 AF358011.1 clone LO13.19 prokMSA_id:56291 AJ458468.1 Methylosinus sporium str. 44/2 prokMSA_id:58401 AB008108.1 Methylosinus trichosporium str. OB3b prokMSA_id:60583 AF407716.1 Great Artesian Basin clone B15 prokMSA_id:61179 AY080923.1 clone EOH1 prokMSA_id:63270 AF523949.1 forested wetland clone FW91 prokMSA_id:63274 AF523948.1 forested wetland clone FW138 prokMSA_id:70100 AY145551.1 dilution (10e-5) freshwater section Weser estuary isolate str. AP-12 AP-12 prokMSA_id:71224 AJ458486.1 Methylosinus sporium str. 8 prokMSA_id:71647 AY145553.1 dilution (10e-5) freshwater section Weser estuary isolate str. AP-16 AP-16 prokMSA_id:74080 AJ437459.1 rhizosphere extract clone 1_32_322 prokMSA_id:74895 AY159207.1 microbial biofilm with membrane-based water purification process isolate str. RO_isolate_11 prokMSA_id:74901 AJ518770.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-53 prokMSA_id:74952 AJ534617.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-166 prokMSA_id:74986 AJ518761.1 uranium mining waste pile clone JG37-AG-1 proteobacterium prokMSA_id:75138 AJ532703.1 uranium mining waste pile clone JG34-KF-211 proteobacterium prokMSA_id:75557 AJ518762.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-3 prokMSA_id:80390 AY192247.1 Rocky Mountain alpine soil clone W2b-2G prokMSA_id:80727 AY192258.1 Rocky Mountain alpine soil clone P3-3A prokMSA_id:80921 AY192262.1 Rocky Mountain alpine soil clone S2-1D prokMSA_id:89125 AY328588.1 drinking water system simulator clone HOClCi39 prokMSA_id:93584 AJ582029.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-46 prokMSA_id:94332 AY203771.1 basaltic aquifer groundwater clone 17E-T2R21 prokMSA_id:94382 AY203750.1 basaltic aquifer groundwater clone 9E-T2C14 prokMSA_id:94469 AY203755.1 basaltic aquifer groundwater clone 9E-T2A1 prokMSA_id:94497 AY203777.1 basaltic aquifer groundwater clone 112nGW-T2H310 prokMSA_id:94512 AY203756.1 basaltic aquifer groundwater clone 9E-T2C31 prokMSA_id:94537 AY203781.1 basaltic aquifer groundwater clone 8nGW-T2B122 prokMSA_id:94586 AY203753.1 basaltic aquifer groundwater clone 8nGW-T2G134 prokMSA_id:94641 AY203773.1 basaltic aquifer groundwater clone 112E-T2B39 prokMSA_id:94652 AY203778.1 basaltic aquifer groundwater clone 112nGW-T2K307 prokMSA_id:94676 AY203770.1 basaltic aquifer groundwater clone 17nGW-T2M251 prokMSA_id:94685 AY203758.1 basaltic aquifer groundwater clone 8nGW-T2E116 prokMSA_id:94708 AY203752.1 basaltic aquifer groundwater clone 8nGW-T2B108 prokMSA_id:94719 AY203772.1 basaltic aquifer groundwater clone 112E-T2A12 prokMSA_id:94742 AY203765.1 basaltic aquifer groundwater clone 17nGW-T2A201 prokMSA_id:94773 AY203779.1 basaltic aquifer groundwater clone 112E-T2V21 prokMSA_id:94813 AY203754.1 basaltic aquifer groundwater clone 8nGW-T2X105 prokMSA_id:94896 AY203775.1 basaltic aquifer groundwater clone 112E-T2D18 prokMSA_id:94903 AY203767.1 basaltic aquifer groundwater clone 17nGW-T2F217 prokMSA_id:94968 AY203749.1 basaltic aquifer groundwater clone 9E-T2B14 prokMSA_id:94988 AY203764.1 basaltic aquifer groundwater clone 17E-T2A11 prokMSA_id:95043 AY203766.1 basaltic aquifer groundwater clone 17nGW-T2E208 prokMSA_id:95051 AY203774.1 basaltic aquifer groundwater clone 112nGW-T2C325 prokMSA_id:95081 AY203769.1 basaltic aquifer groundwater clone 17nGW-T2H214 prokMSA_id:95085 AY203757.1 basaltic aquifer groundwater clone 8E-T2A1 prokMSA_id:95124 AY203763.1 basaltic aquifer groundwater clone 8GW-T2FF27 prokMSA_id:95138 AY203776.1 basaltic aquifer groundwater clone 112E-T2E5 prokMSA_id:95139 AY203759.1 basaltic aquifer groundwater clone 8nGW-T2I132 prokMSA_id:95155 AY203760.1 basaltic aquifer groundwater clone 8nGW-T2Q133 prokMSA_id:95173 AY203761.1 basaltic aquifer groundwater clone 8nGW-T2R128 prokMSA_id:95372 AY424827.1 Romania:Movile Cave clone mv13.6 prokMSA_id:97561 AB121772.1 soil isolate str. Shinshu-th1 prokMSA_id:99540 AY425765.1 volcanic deposit 1700 clone 1700-5 prokMSA_id:100012 AY425768.1 volcanic deposit 1700 clone 1700-8 prokMSA_id:100137 AJ563930.1 Beijerinckia subsp. indica str. ATCC 9039 prokMSA_id:100289 AJ563931.1 Beijerinckia indica subsp. lacticogenes str. DSM 1719 prokMSA_id:100451 AJ563932.1 Beijerinckia mobilis str. DSM 2326 prokMSA_id:100604 AJ563933.1 Beijerinckia subsp. derxii str. DSM 2328 prokMSA_id:100754 AJ563934.1 Beijerinckia derxii subsp. venezuelae str. DSM 2329 prokMSA_id:101542 AY395350.1 pasture soil clone EB1031 prokMSA_id:101664 AB119203.1 Beijerinckia sp. str. TB9 prokMSA_id:101983 AB119205.1 Beijerinckia sp. str. TB11 prokMSA_id:102137 AB119206.1 Beiejrinckia sp. str. TB12 prokMSA_id:102178 AY395426.1 pasture soil clone EB1107 prokMSA_id:102280 AB119207.1 Beijerinckia sp. str. TB13 prokMSA_id:102413 AY395440.1 pasture soil clone EB1121 prokMSA_id:103180 AY395445.1 pasture soil clone EB1126 prokMSA_id:103319 AY395446.1 pasture soil clone EB1127 prokMSA_id:105891 AB119196.1 Beijerinckia indica prokMSA_id:106062 AJ831521.1 Methylocystis sp. L28 prokMSA_id:106197 AB119210.1 Beijerinckia sp. str. TB16 prokMSA_id:106358 AB119199.1 Beijerinckia indica str. ATCC 19361 prokMSA_id:106359 AB119211.1 Beijerinckia sp. str. TB17 prokMSA_id:106453 AY395419.1 pasture soil clone EB1100 prokMSA_id:106558 AY395432.1 pasture soil clone EB1113 prokMSA_id:106623 AY395348.1 pasture soil clone EB1029 prokMSA_id:107444 AY622245.1 subsurface soil clone B-L17 prokMSA_id:108023 AY163571.1 type II methanotroph clone ems18 prokMSA_id:111434 AY724041.2 soil clone DUNssu326 prokMSA_id:111439 AY234497.1 soil isolate Ellin5080 prokMSA_id:111888 AY724055.2 soil clone DUNssu006 prokMSA_id:111945 AJ278726.1 NCIMB 13765 prokMSA_id:112743 AY913548.1 forest soil clone DUNssu376 prokMSA_id:112774 AY913621.1 forest soil clone DUNssu482 prokMSA_id:112780 AY913555.1 forest soil clone DUNssu383 prokMSA_id:112799 AY913596.1 forest soil clone DUNssu456 prokMSA_id:112822 AY921934.1 farm soil adjacent to silage storage bunker clone AKYG981 prokMSA_id:112857 AY921819.1 farm soil adjacent to silage storage bunker clone AKYG1088 prokMSA_id:112882 AY921914.1 farm soil adjacent to silage storage bunker clone AKYH998 prokMSA_id:112910 AY913601.1 forest soil clone DUNssu461 prokMSA_id:112914 AY913554.1 forest soil clone DUNssu382 prokMSA_id:112915 AY913611.1 forest soil clone DUNssu472 prokMSA_id:112948 AY913571.1 forest soil clone DUNssu400 prokMSA_id:112955 AY922001.1 farm soil adjacent to silage storage bunker clone AKYG1897 prokMSA_id:112975 AY913558.1 forest soil clone DUNssu386 prokMSA_id:112978 AY913519.1 forest soil clone DUNssu343 prokMSA_id:112992 AY921974.1 farm soil adjacent to silage storage bunker clone AKYG1699 prokMSA_id:113005 AY922142.1 farm soil adjacent to silage storage bunker clone AKYH643 prokMSA_id:113028 AY913239.1 forest soil clone DUNssu018 prokMSA_id:113104 AY913546.1 forest soil clone DUNssu373 prokMSA_id:113107 AY913586.1 forest soil clone DUNssu445 prokMSA_id:113115 AY913556.1 forest soil clone DUNssu384 prokMSA_id:113147 AY913579.1 forest soil clone DUNssu438 prokMSA_id:113208 AY913490.1 forest soil clone DUNssu290 prokMSA_id:113329 AY913597.1 forest soil clone DUNssu457 prokMSA_id:113362 AY921958.1 farm soil adjacent to silage storage bunker clone AKYG1554 prokMSA_id:113411 AY913320.1 forest soil clone DUNssu097 prokMSA_id:113441 AY913373.1 forest soil clone DUNssu166 prokMSA_id:113445 AY913267.1 forest soil clone DUNssu047 prokMSA_id:113456 AY913610.1 forest soil clone DUNssu471 prokMSA_id:113474 AY921820.1 farm soil adjacent to silage storage bunker clone AKYG712 prokMSA_id:113504 AY913474.1 forest soil clone DUNssu274 prokMSA_id:113551 AY913584.1 forest soil clone DUNssu443 prokMSA_id:113602 AY913569.1 forest soil clone DUNssu398 prokMSA_id:113644 AY913568.1 forest soil clone DUNssu397 prokMSA_id:113666 AY913522.1 forest soil clone DUNssu346 prokMSA_id:113720 AY913512.1 forest soil clone DUNssu335 prokMSA_id:113766 AY913588.1 forest soil clone DUNssu447 prokMSA_id:113801 AY922106.1 farm soil adjacent to silage storage bunker clone AKYH1402 prokMSA_id:113812 AY913526.1 forest soil clone DUNssu351 prokMSA_id:113814 AY913537.1 forest soil clone DUNssu364 prokMSA_id:113870 AY913536.1 forest soil clone DUNssu363 prokMSA_id:113871 AY913599.1 forest soil clone DUNssu459 prokMSA_id:113943 AY913589.1 forest soil clone DUNssu448 prokMSA_id:113962 AY913565.1 forest soil clone DUNssu393 prokMSA_id:113971 AY913524.1 forest soil clone DUNssu348 prokMSA_id:113987 AY913592.1 forest soil clone DUNssu451 prokMSA_id:113994 AY913598.1 forest soil clone DUNssu458 prokMSA_id:113999 AY913566.1 forest soil clone DUNssu394 prokMSA_id:114011 AY913510.1 forest soil clone DUNssu333 prokMSA_id:114050 AY913477.1 forest soil clone DUNssu277 prokMSA_id:114090 AY913613.1 forest soil clone DUNssu474 prokMSA_id:114096 AY913243.1 forest soil clone DUNssu022 prokMSA_id:114109 AY913594.1 forest soil clone DUNssu453 prokMSA_id:114139 AY921846.1 farm soil adjacent to silage storage bunker clone AKYG1898 prokMSA_id:114149 AY913543.1 forest soil clone DUNssu370 prokMSA_id:114219 AY913488.1 forest soil clone DUNssu288 prokMSA_id:114220 AY913407.1 forest soil clone DUNssu201 prokMSA_id:114243 AY913549.1 forest soil clone DUNssu377 prokMSA_id:114253 AY913539.1 forest soil clone DUNssu366 prokMSA_id:114302 AY913614.1 forest soil clone DUNssu475 prokMSA_id:114331 AY913582.1 forest soil clone DUNssu441 prokMSA_id:114342 AY913485.1 forest soil clone DUNssu285 prokMSA_id:114396 AY922092.1 farm soil adjacent to silage storage bunker clone AKYH1064 2.43.1.3.1.1.6670 OTU 1 seq prokMSA_id:65463 AY102322.1 heavy metal-contaminated soil clone a13115 2.43.1.3.1.1.6719 OTU 1 seq prokMSA_id:4760 U87772.1 Afipia genosp. 6 str. G8665 2.43.1.3.1.1.6721 OTU 3 seqs prokMSA_id:4761 Y17144.1 Methylocella palustris prokMSA_id:104806 AJ563925.1 Methylocella palustris str. Y5 prokMSA_id:105097 AJ563927.1 Methylocella palustris str. H4 2.43.1.3.1.1.6722 OTU 1 seq prokMSA_id:30920 AF445126.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc66 2.43.1.3.1.1.6731 OTU 1 seq prokMSA_id:4764 Y07582.1 Drentse grassland soil clone DA067 2.43.1.3.1.1.6734 OTU 1 seq prokMSA_id:4765 X97077.1 peat bog clone TM19 2.43.1.3.1.1.6762 OTU 2 seqs prokMSA_id:36961 AF200694.1 13C- extracted 13C-methanol exposed soil clone UP1 proteobacterium prokMSA_id:61190 AY080913.1 acidic forest soil clone UP8 2.43.1.3.1.1.6766 OTU 1 seq prokMSA_id:4411 Y07647.2 Drentse grassland soil clone vii 2.43.1.3.1.1.6780 OTU 1 seq prokMSA_id:34088 AJ295558.1 rape rhizosphere clone wr0197 2.43.1.3.1.1.6826 OTU 1 seq prokMSA_id:4721 Y12598.1 grassland soil clone DA122 2.43.1.3.1.1.6943 OTU 1 seq prokMSA_id:63879 AB087717.1 Rhodoplanes sp. str. HA17 2.43.1.3.1.1.7000 OTU 1 seq prokMSA_id:19989 AJ289986.1 Germany: Lake Fuchskuhle south basin clone FukuS110 FukuS110 2.43.1.3.1.1.7024 OTU 1 seq prokMSA_id:79281 AY186195.1 deep-sea sediment clone P_wp0211 2.43.1.3.1.1.7117 OTU 1 seq prokMSA_id:51286 AF200695.1 13C- extracted 13C-methanol exposed soil clone UP2 proteobacterium 2.43.1.3.1.1.7119 OTU 1 seq prokMSA_id:4594 AB006768.1 Terasakiella pusilla str. IFO13613 2.43.1.3.1.1.7141 OTU 1 seq prokMSA_id:4719 AF077730.1 Rhodoplanes sp. str. Wai3R3 2.43.1.3.1.1.7153 OTU 7 seqs prokMSA_id:24886 AF407383.1 MCB-contaminated groundwater-treating reactor clone RB7C4 prokMSA_id:27469 AF407384.1 MCB-contaminated groundwater-treating reactor clone RB7C5 prokMSA_id:64189 AJ491847.1 Methylocella silvestris str. BL2 prokMSA_id:78050 AB089096.1 termite gut homogenate clone Rs-K73 prokMSA_id:83530 AJ555244.1 Methylocella tundrae str. T4 prokMSA_id:105258 AJ563928.1 Methylocella tundrae str. Y1 prokMSA_id:105408 AJ563929.1 Methylocella tundrae str. Ch1 2.43.1.3.1.1.7219 OTU 1 seq prokMSA_id:4737 M95665.1 Methylosinus sporium 2.43.1.3.1.1.7228 OTU 2 seqs prokMSA_id:21706 AJ295650.1 uranium mining waste pile clone KF-JG30-B3 KF-JG30-B3 prokMSA_id:63277 AF523945.1 forested wetland clone FW96 2.43.1.3.1.1.7239 OTU 1 seq prokMSA_id:35557 AF358664.1 Thalassospira lucentensis 2.43.1.3.1.1.7261 OTU 1 seq prokMSA_id:4718 AF077729.1 Rhodoplanes sp. str. Tok2tar1 2.43.1.3.1.1.7275 OTU 1 seq prokMSA_id:83531 AY221076.1 Mammoth cave clone CCU18 2.43.1.3.1.1.7302 OTU 1 seq prokMSA_id:51161 AF234713.1 sludge clone A28b 2.43.1.3.1.1.7401 OTU 5 seqs prokMSA_id:18725 AF143827.1 hydrocarbon-degrading consortium clone 4-Org1-59 prokMSA_id:27957 AF359545.1 Scrippsiella trochoidea NEPCC 15 prokMSA_id:43487 AJ294358.1 proteobacterium strain vs17 clone 4alphavs17 4alphavs1 prokMSA_id:79518 AF505720.1 Boston Harbor surface water isolate str. UMB1A UMB1A prokMSA_id:85257 AF500210.1 isolate str. CJ11073 2.43.1.3.1.1.7419 OTU 1 seq prokMSA_id:58103 AF498722.1 soil isolate Ellin340 2.43.1.3.1.1.7495 OTU 1 seq prokMSA_id:4680 D25313.1 Rhodoplanes roseus 2.43.1.3.1.1.7544 OTU 1 seq prokMSA_id:64872 AJ412676.1 denitrifying reactor clone 92 2.43.1.3.1.1.7558 OTU 1 seq prokMSA_id:4647 AF004844.1 Methylopila capsulata str. IM1 2.43.1.3.1.1.7620 OTU 1 seq prokMSA_id:39556 AJ296548.1 uranium mining mill tailing clone GR-WP33-3 GR-WP33-3 2.43.1.3.1.1.7640 OTU 55 seqs prokMSA_id:4736 L20845.1 str B-3060 prokMSA_id:4738 AF150805.1 Methylocystis parvus prokMSA_id:4739 AF150804.1 Methylosinus trichosporium prokMSA_id:4740 AF150802.1 Methylosinus sp. str. PW1 prokMSA_id:4741 AF150790.1 Methylocystis sp. str. LW5 prokMSA_id:4742 AF150788.1 Methylosinus sp. str. LW3 prokMSA_id:4747 AF177298.1 type II methanotroph AML-A3 prokMSA_id:4748 AF177299.1 type II methanotroph AML-A6 prokMSA_id:4749 Y18442.1 soil enrichment clone LR1 prokMSA_id:4752 U81595.1 Methylocystis sp. str. M prokMSA_id:4753 AF153281.1 Methylocystis sp. WI14 str. WI 14 prokMSA_id:28443 AJ414656.1 Methylocystis sp. str. SV97 prokMSA_id:30352 AJ229205.1 anoxic bulk soil flooded rice microcosm clone BSV53 clone prokMSA_id:32547 AF107461.1 Methylosinus pucelana str. MTS prokMSA_id:35967 AY007294.1 Methylosinus sp. str. LW8 prokMSA_id:36920 AF358021.1 peat soil microcosm clone LO13.7 prokMSA_id:42706 Y18946.1 Methylosinus sporium str. NCIMB 11126 prokMSA_id:44508 Y18947.1 Methylosinus trichosporium str. OB3b (NCIMB 11131) prokMSA_id:52070 AY007293.1 Methylosinus sp. str. LW4 prokMSA_id:55280 AJ431384.1 Methylocystis sp. str. SC2 prokMSA_id:55601 AJ458479.1 Methylocystis sp. str. 42/22 prokMSA_id:55990 AY007196.1 Methylocystis sp. str. WRS prokMSA_id:56124 AJ458499.1 Methylocystis sp. str. M42/1 prokMSA_id:56187 AJ458490.1 Methylocystis sp. str. H9a prokMSA_id:56666 AJ458482.1 Methylosinus trichosporium str. 1 prokMSA_id:58407 AB007842.1 methylotroph str. Hohenstaufen prokMSA_id:58408 AB007841.1 Methylocystis sp. str. 18-2 prokMSA_id:58411 AB007840.1 Methylosinus sp. str. NCIMB 13214 prokMSA_id:61187 AY080911.1 acidic forest soil clone UP4 prokMSA_id:61188 AY080912.1 acidic forest soil clone UP6 prokMSA_id:61191 AY080917.1 acidic forest soil clone UP5 prokMSA_id:64196 AJ458509.1 Methylosinus sp. str. D15a prokMSA_id:64198 AJ458507.1 Methylocystis sp. str. 82 prokMSA_id:64199 AJ458506.1 Methylocystis sp. str. KS33 prokMSA_id:64200 AJ458505.1 Methylocystis sp. str. KS31 prokMSA_id:64201 AJ458503.1 Methylocystis sp. str. M31 prokMSA_id:64202 AJ458504.1 Methylocystis sp. str. F10V2a prokMSA_id:64203 AJ458502.1 Methylocystis echinoides str. 2 prokMSA_id:64204 AJ458501.1 Methylocystis sp. str. 39 prokMSA_id:64206 AJ458498.1 Methylocystis sp. str. KS7 prokMSA_id:64207 AJ458497.1 Methylocystis sp. str. KS3 prokMSA_id:64208 AJ458496.1 Methylosinus trichosporium str. KS24b prokMSA_id:64209 AJ458494.1 Methylocystis sp. str. KS12 prokMSA_id:64210 AJ458493.1 Methylocystis sp. str. KS8a prokMSA_id:64211 AJ458491.1 Methylosinus trichosporium str. O19/1 prokMSA_id:64217 AJ458483.1 Methylocystis sp. str. Pi5/4 prokMSA_id:64218 AJ458484.1 Methylocystis sp. str. 50/42a prokMSA_id:64219 AJ458481.1 Methylosinus trichosporium str. 33/1 prokMSA_id:64224 AJ458475.1 Methylocystis sp. str. 51 prokMSA_id:64227 AJ458471.1 Methylocystis sp. str. IMET 10486 prokMSA_id:64230 AJ458467.1 Methylocystis sp. str. 495/4 prokMSA_id:64234 AJ431385.2 Methylosinus trichosporium str. KS21 prokMSA_id:70162 AJ458469.1 Methylosinus sporium str. 9/1 prokMSA_id:70519 AJ458487.1 Methylocystis sp. str. Ch22 prokMSA_id:74224 AJ458485.1 Methylosinus trichosporium str. SC10 2.43.1.3.2 Bradyrhizobiaceae 222 seqs 2.43.1.3.2.1 sf_1 222 seqs 2.43.1.3.2.1.6636 OTU 20 seqs prokMSA_id:4943 X70402.1 Bradyrhizobium species prokMSA_id:4945 X70403.1 Bradyrhizobium species prokMSA_id:4946 U35000.3 Bradyrhizobium elkanii prokMSA_id:4947 X70404.1 Bradyrhizobium species prokMSA_id:4961 X70405.1 Bradyrhizobium species prokMSA_id:16523 AF363152.1 Bradyrhizobium elkanii str. USDA 94 prokMSA_id:31992 AY039303.1 Bradyrhizobium sp. str. 5F3 prokMSA_id:33324 AF417050.1 Bradyrhizobium sp. str. bfs1b prokMSA_id:36853 AB035490.1 isolate str. 12A prokMSA_id:39071 AF234890.2 Bradyrhizobium elkanii str. SEMIA 587 prokMSA_id:48285 AB035489.1 isolate str. RD5-C2 prokMSA_id:55820 AF293374.1 Bradyrhizobium elkanii str. USDA 121 prokMSA_id:56127 AF293376.1 Bradyrhizobium elkanii str. USDA 23 prokMSA_id:56364 AY039017.1 Bradyrhizobium sp. ORS3262 str. ORS 3262 prokMSA_id:64297 AY039016.1 Bradyrhizobium sp. ORS3260 str. ORS 3260 prokMSA_id:68819 AF293380.1 Bradyrhizobium elkanii str. USDA 90 prokMSA_id:68820 AF293379.1 Bradyrhizobium elkanii str. USDA 86 prokMSA_id:70194 AF208510.1 Bradyrhizobium elkanii str. USDA 130 prokMSA_id:71952 AF208512.1 Bradyrhizobium elkanii str. USDA 31 prokMSA_id:81433 AF514796.1 Bradyrhizobium sp. str. ORS204 2.43.1.3.2.1.6768 OTU 1 seq prokMSA_id:4850 M59068.1 Rhodopseudomonas palustris 2.43.1.3.2.1.6799 OTU 1 seq prokMSA_id:4865 D12700.1 Rhodopseudomonas palustris 2.43.1.3.2.1.6867 OTU 1 seq prokMSA_id:65458 AY102327.1 heavy metal-contaminated soil clone a13131 2.43.1.3.2.1.6878 OTU 34 seqs prokMSA_id:4885 D12781.1 Bradyrhizobium japonicum prokMSA_id:4929 Z94804.1 Bradyrhizobium genosp. G str. BDV5680 prokMSA_id:4980 X87272.1 Bradyrhizobium japonicum prokMSA_id:4984 AB003459.1 Soil DNB isolate str. G14127 prokMSA_id:4997 AF159436.1 Bradyrhizobium sp. str. Pe1-3 prokMSA_id:5001 Z94809.1 Bradyrhizobium genosp. C str. BDV5792 prokMSA_id:5002 Z94810.1 Bradyrhizobium genosp. K str. BDV5358 prokMSA_id:5004 Z94813.1 Bradyrhizobium genosp. D str. BDV5563 prokMSA_id:5005 Z94818.1 Bradyrhizobium genosp. I str. BDV5370 prokMSA_id:5006 Z94820.1 Bradyrhizobium genosp. J str. BDV5697 prokMSA_id:5008 Z94823.1 Bradyrhizobium genosp. O str. BDV5840 prokMSA_id:5010 AB003458.1 Soil DNB isolate str. G14003 prokMSA_id:17820 AF384139.1 Bradyrhizobium sp. str. Pplu1-1 prokMSA_id:20737 AF417549.1 Bradyrhizobium japonicum str. DASA24015 prokMSA_id:22742 AB070567.1 Bradyrhizobium japonicum str. NK2 prokMSA_id:27694 AF363150.1 Bradyrhizobium japonicum str. USDA 110 prokMSA_id:32699 AF239843.2 Bradyrhizobium japonicum str. PRY40 prokMSA_id:37715 AF363137.1 Bradyrhizobium japonicum str. MSDJ G49 prokMSA_id:38637 AB070568.1 Bradyrhizobium japonicum str. NK5 prokMSA_id:39358 AF363136.1 Bradyrhizobium sp. str. MSDJ G17 prokMSA_id:39826 AF384140.1 Bradyrhizobium sp. str. Pplu1-11 prokMSA_id:49866 AF193818.1 Bradyrhizobium yuanmingense str. B071 prokMSA_id:50479 AF363127.1 Bradyrhizobium japonicum str. MSDJ 5732 prokMSA_id:51967 AF239844.2 Bradyrhizobium japonicum str. PRY42 prokMSA_id:55721 AF208503.1 Bradyrhizobium japonicum str. USDA 122 prokMSA_id:56515 AF208509.1 Bradyrhizobium japonicum str. USDA 129 prokMSA_id:61022 AF530467.1 Bradyrhizobium japonicum SD5 prokMSA_id:62331 AB079683.1 Bradyrhizobium sp. MAFF 210318 prokMSA_id:64291 AY039015.1 Bradyrhizobium sp. ORS3259 str. ORS 3259 prokMSA_id:68703 AF485365.1 Bradyrhizobium sp. str. LMTR 28 prokMSA_id:68818 AF293381.1 Bradyrhizobium japonicum str. USDA 91 prokMSA_id:69495 AF208517.1 Bradyrhizobium japonicum str. USDA 62 prokMSA_id:77282 AF236087.2 Bradyrhizobium japonicum str. SEMIA 586 prokMSA_id:81409 AY169423.1 Bradyrhizobium japonicum 2.43.1.3.2.1.6887 OTU 6 seqs prokMSA_id:4949 D89027.1 strain isolate str. HW13 prokMSA_id:4950 D89028.1 strain isolate str. HWK12 prokMSA_id:21176 AF417554.1 Bradyrhizobium elkanii str. DASA37005 prokMSA_id:35279 AJ307939.1 derived microbial 'pearl'- community clone sipK8 prokMSA_id:49293 AB067729.1 Bradyrhizobium str. YB2 prokMSA_id:55735 AF208516.1 Bradyrhizobium elkanii str. USDA 46 2.43.1.3.2.1.6917 OTU 20 seqs prokMSA_id:4930 Z94814.1 Bradyrhizobium genosp. E str. BDV5810 prokMSA_id:4938 D11345.1 Bradyrhizobium japonicum prokMSA_id:4939 D14507.1 Bradyrhizobium species prokMSA_id:4941 D14508.1 Bradyrhizobium sp. 129 prokMSA_id:4995 AF159438.1 Bradyrhizobium sp. str. Mm1-3 prokMSA_id:5037 AJ133779.1 Bradyrhizobium sp. str. LMG 12187 prokMSA_id:5046 D86354.1 Bradyrhizobium sp. str. USDA4362 prokMSA_id:5055 D78366.1 Agromonas oligotrophica prokMSA_id:22219 AJ292603.1 PCB-polluted soil clone WD275 prokMSA_id:27860 AF371935.1 phylotype OTU-382 swine intestine clone p-5142-2Wb3 prokMSA_id:31138 AF230721.1 Bradyrhizobium sp. str. ORS2012 prokMSA_id:35423 AF445742.1 travertine hot spring clone SM2H01 prokMSA_id:37744 AF230718.1 Bradyrhizobium sp. str. ORS2005 prokMSA_id:43422 AF239254.1 Bradyrhizobium sp. str. STM461 prokMSA_id:62335 AB079676.1 Bradyrhizobium sp. IRBG 228 prokMSA_id:62336 AB079677.1 Bradyrhizobium sp. IRBG 230 prokMSA_id:62338 AB079675.1 Bradyrhizobium sp. IRBG 2 prokMSA_id:62343 AB079633.1 Bradyrhizobium sp. BTAi 1 prokMSA_id:71353 AF387321.1 Bradyrhizobium sp. str. C7T1 prokMSA_id:78897 AJ536879.1 uranium mining waste pile soil sample clone JG30-KF-AS89 2.43.1.3.2.1.6927 OTU 9 seqs prokMSA_id:4834 L35506.1 Nitrobacter winogradskyi prokMSA_id:4840 L11661.1 "Nitrobacter winogradskyi" prokMSA_id:4843 L11663.1 Nitrobacter hamburgensis prokMSA_id:4844 L35502.1 "Nitrobacter hamburgensis" prokMSA_id:17737 AY055796.1 Nitrobacter winogradskyi prokMSA_id:25095 AY055795.1 Nitrobacter sp. str. PJN1 prokMSA_id:47296 AY055797.1 Nitrobacter sp. str. NRB5220 prokMSA_id:101801 AY624132.1 Bradyrhizobium sp. str. PAC43 prokMSA_id:105247 AY628223.1 Bradyrhizobium sp. str. PAC18 2.43.1.3.2.1.6941 OTU 25 seqs prokMSA_id:4866 L11664.1 Rhodopseudomonas palustris prokMSA_id:4983 Z94815.1 Bradyrhizobium genosp. F str. BDV5029 prokMSA_id:23765 AF417542.1 Bradyrhizobium japonicum str. DASA02010 prokMSA_id:27428 AF417552.1 Bradyrhizobium japonicum str. DASA37011 prokMSA_id:28205 AF363288.1 Nitrobacter winogradskyi str. IFO 14297 prokMSA_id:33185 AF417547.1 Bradyrhizobium japonicum str. DASA38025 prokMSA_id:35097 AB074667.1 Japan:Lake Biwa isolate str. D-C(2)-17A prokMSA_id:40221 AJ295483.1 rape rhizosphere clone wr0024 prokMSA_id:41012 AF308874.1 Arsenic resistant soil isolate str. 7-02 prokMSA_id:45495 AF417548.1 Bradyrhizobium japonicum str. DASA03183 prokMSA_id:48037 AF417550.1 Bradyrhizobium japonicum str. DASA01059 prokMSA_id:49277 AF417545.1 Bradyrhizobium japonicum str. THA7 prokMSA_id:54256 AF417541.1 Bradyrhizobium japonicum str. DASA02007 prokMSA_id:62972 AF526939.1 Mars Odyssey Orbiter and encapsulation facility clone 81-24 prokMSA_id:62985 AF526923.1 Mars Odyssey Orbiter and encapsulation facility clone T8-12 sp. prokMSA_id:63273 AF523947.1 forested wetland clone FW94 prokMSA_id:63890 AB087719.1 Rhodopseudomonas rhenobacensis str. Klemme Rb prokMSA_id:73880 AF257076.1 Nitrobacter sp. clone RM8 prokMSA_id:87593 AF510593.1 Bradyrhizobium sp. str. Kus-6 prokMSA_id:104129 AY649436.1 Bradyrhizobium elkanii str. BR3283 prokMSA_id:105945 AY444983.1 biofilm on oxygen-transfer membrane clone m35 prokMSA_id:107039 AY507983.1 Bradyrhizobium sp. str. PT27 prokMSA_id:107429 AY568506.1 Afipia broomeae str. C-20 prokMSA_id:111553 AF509907.1 Bradyrhizobium sp. str. CMI23 prokMSA_id:112163 AY904736.1 Bradyrhizobium elkanii str. SEMIA 696 2.43.1.3.2.1.6942 OTU 1 seq prokMSA_id:45827 AF417551.1 Bradyrhizobium japonicum str. DASA37026 2.43.1.3.2.1.7006 OTU 1 seq prokMSA_id:29702 AY055794.1 Nitrobacter sp. str. KB215 2.43.1.3.2.1.7044 OTU 7 seqs prokMSA_id:4962 U87762.1 Afipia genosp. 1 str. G6457 prokMSA_id:4963 U87763.1 Afipia genosp. 1 str. F872 prokMSA_id:4964 U87764.1 Afipia genosp. 2 str. G8965 prokMSA_id:4965 U87765.1 Afipia genosp. 2 str. G4438 prokMSA_id:5045 AF041446.1 Bradyrhizobium sp. 'SH 283012' str. SH 283012 'SH prokMSA_id:57890 AY141982.1 Bradyrhizobium sp. str. SH28301 prokMSA_id:99065 AY547290.1 Bradyrhizobium sp. str. CCBAU 7128301 2.43.1.3.2.1.7077 OTU 1 seq prokMSA_id:39678 AF288303.1 isolate str. 34626 2.43.1.3.2.1.7078 OTU 1 seq prokMSA_id:4832 M69186.1 Afipia clevelandensis 2.43.1.3.2.1.7087 OTU 31 seqs prokMSA_id:4880 X87273.1 Rhizobium lupini prokMSA_id:4931 Z94816.1 Bradyrhizobium genosp. H str. BDV5329 prokMSA_id:4933 AF178434.1 Bradyrhizobium sp. str. ApB16 prokMSA_id:18027 AF363135.1 Bradyrhizobium japonicum str. MSDJ 5697 prokMSA_id:19473 AF363121.1 Bradyrhizobium japonicum str. MSDJ 5584 prokMSA_id:19767 AF363129.1 Bradyrhizobium japonicum str. MSDJ 5317 prokMSA_id:20855 AJ250813.1 Bradyrhizobium liaoningense str. LMG 18230 prokMSA_id:20975 AF363124.1 Bradyrhizobium japonicum str. MSDJ 5582 prokMSA_id:21490 AB070570.1 Bradyrhizobium japonicum str. NA6545 prokMSA_id:21631 AF363145.1 Bradyrhizobium sp. str. MSDJ 5493 prokMSA_id:23776 AB070571.1 Bradyrhizobium japonicum str. USDA135 prokMSA_id:26267 AB029402.1 Bradyrhizobium liaoningense prokMSA_id:29213 AF363113.1 Bradyrhizobium japonicum str. MSDJ 5605 prokMSA_id:30965 AF363125.1 Bradyrhizobium japonicum str. MSDJ 5569 prokMSA_id:31104 AF363128.1 Bradyrhizobium japonicum str. MSDJ 5327 prokMSA_id:34952 AF363131.1 Bradyrhizobium liaoningense str. 2043 prokMSA_id:35319 AF363130.1 Bradyrhizobium japonicum str. MSDJ 5344 prokMSA_id:36732 AF234888.2 Bradyrhizobium japonicum str. SEMIA 5079; CPAC 15 prokMSA_id:36971 AF239842.2 Bradyrhizobium japonicum str. PRY1 prokMSA_id:37117 AF363133.1 Bradyrhizobium japonicum str. MSDJ 5718 prokMSA_id:37915 AF363151.1 Bradyrhizobium japonicum str. USDA 123 prokMSA_id:42291 AF363115.1 Bradyrhizobium japonicum str. MSDJ 5563 prokMSA_id:47540 AF384138.1 Bradyrhizobium sp. str. Ppau3-25 prokMSA_id:48441 AF363132.1 Bradyrhizobium liaoningense str. 2281 prokMSA_id:51333 AF363144.1 Bradyrhizobium sp. str. MSDJ 5495 prokMSA_id:61020 AF530468.1 Bradyrhizobium japonicum HA1 prokMSA_id:63555 AY117677.1 Bradyrhizobium japonicum str. SEMIA 5085 prokMSA_id:69144 AF208504.1 Bradyrhizobium japonicum str. USDA 123 prokMSA_id:69704 AF208511.1 Bradyrhizobium japonicum str. USDA 135 prokMSA_id:70036 AF208513.1 Bradyrhizobium liaoningense prokMSA_id:70284 AF208508.1 Bradyrhizobium japonicum str. USDA 127 2.43.1.3.2.1.7126 OTU 1 seq prokMSA_id:75549 AJ534670.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN96 proteobacterium 2.43.1.3.2.1.7316 OTU 12 seqs prokMSA_id:4851 D25312.1 Rhodopseudomonas palustris prokMSA_id:4852 U87771.1 Afipia genosp. 5 str. F8014 prokMSA_id:4859 D84187.1 Rhodopseudomonas palustris prokMSA_id:4863 D89811.1 Rhodopseudomonas palustris str. No.7 prokMSA_id:4864 AF123087.1 Rhodopseudomonas palustris str. ATCC17001; T prokMSA_id:19194 AF314063.1 Rhodopseudomonas palustris str. KD1 prokMSA_id:23531 AF314064.1 Rhodopseudomonas palustris str. BIS10 prokMSA_id:28497 AB027692.2 Rhodopseudomonas sp. str. B29 prokMSA_id:37581 AF416654.1 Rhodopseudomonas palustris str. BIS6 prokMSA_id:42172 AF416663.1 Rhodopseudomonas palustris str. DCP3 prokMSA_id:62340 AB079634.1 Rhodopseudomonas palustris VA2-2 prokMSA_id:68785 AF487431.1 Rhodopseudomonas palustris str. Wai1val1 2.43.1.3.2.1.7328 OTU 1 seq prokMSA_id:45478 AF229858.1 Bradyrhizobium sp. str. 2FB3 2.43.1.3.2.1.7333 OTU 12 seqs prokMSA_id:4855 AF095928.1 Rhodopseudomonas sp. str. v-1 prokMSA_id:4867 U87770.1 Afipia genosp. 4 str. G7812 prokMSA_id:4913 U87767.1 Afipia genosp. 4 str. G6050 prokMSA_id:4914 U87768.1 Afipia genosp. 4 str. G3644 prokMSA_id:21255 AB033756.1 Rhodopseudomonas palustris str. RN1 prokMSA_id:62333 AB079679.1 Rhodopseudomonas sp. HMD89 prokMSA_id:62337 AB079678.1 Rhodopseudomonas sp. HMD88 prokMSA_id:62406 AF529115.1 trichloroethene-contaminated site clone FTLM116 proteobacterium prokMSA_id:67647 AY084079.1 Rhodopseudomonas palustris KUGB306 prokMSA_id:68786 AF487428.1 Rhodopseudomonas palustris str. Wai1S1 prokMSA_id:73043 AB079680.1 Rhodopseudomonas palustris 99D prokMSA_id:75450 AY166855.1 TCE-dechlorinating enrichment culture clone DCE47 2.43.1.3.2.1.7348 OTU 1 seq prokMSA_id:5026 U87783.1 Afipia genosp. 12 str. G8997 2.43.1.3.2.1.7353 OTU 1 seq prokMSA_id:82205 AY216437.1 temperate estuarine mud clone HC65 2.43.1.3.2.1.7390 OTU 5 seqs prokMSA_id:4967 U87759.1 Afipia broomeae str. F186 prokMSA_id:4971 U87761.1 Afipia broomeae str. G5958 prokMSA_id:4972 U87781.1 Afipia genosp. 10 str. G8996 prokMSA_id:41002 AF288304.1 Afipia birgiae str. 34632 prokMSA_id:78588 AY177369.2 phenanthrene-degrading isolate str. L51B 2.43.1.3.2.1.7398 OTU 11 seqs prokMSA_id:4921 U69637.1 Bradyrhizobium lupini str. KM50 90 (USDA 3514) prokMSA_id:23425 AF363117.1 Bradyrhizobium sp. str. MSDJ 2024 prokMSA_id:24854 AF321214.1 Bradyrhizobium sp. str. Da3-1 prokMSA_id:25125 AF363142.1 Bradyrhizobium sp. str. MSDJ 5728 prokMSA_id:37374 AF363143.1 Bradyrhizobium sp. str. MSDJ 5494 prokMSA_id:44859 AF363139.1 Bradyrhizobium sp. str. MSDJ 2027 prokMSA_id:46384 AF363146.1 Bradyrhizobium sp. str. MSDJ 5729 prokMSA_id:50671 AF222751.1 Bradyrhizobium sp. str. WM9 prokMSA_id:69075 AF208515.1 Bradyrhizobium japonicum str. USDA 4 prokMSA_id:69453 AF208514.1 Bradyrhizobium japonicum str. USDA 38 prokMSA_id:81286 AF514794.1 Bradyrhizobium sp. str. ORS199 2.43.1.3.2.1.7403 OTU 6 seqs prokMSA_id:4829 M65248.1 Afipia felis prokMSA_id:4830 AB021393.1 Pseudomonas carboxydohydrogena str. DSM 1083T prokMSA_id:4831 AF003937.1 Afipia felis str. AfTA-1 CDC G9192 prokMSA_id:68815 AF338177.2 Afipia felis str. ATCC 49715 prokMSA_id:77914 AB099659.1 Oligotropha carboxidovorans str. S23 prokMSA_id:113655 AY921901.1 farm soil adjacent to silage storage bunker clone AKYH874 2.43.1.3.2.1.7438 OTU 1 seq prokMSA_id:56503 AY055798.1 Nitrobacter sp. str. KB212 2.43.1.3.2.1.7477 OTU 9 seqs prokMSA_id:4977 D89029.1 strain isolate str. BTH prokMSA_id:4978 D89030.1 strain isolate str. RCO prokMSA_id:41143 AJ295466.1 rape rhizosphere clone wr0005 prokMSA_id:42229 AJ295465.1 rape rhizosphere clone wr0004 prokMSA_id:55508 AB079725.1 Bradyrhizobium sp. str. DASA 35082 prokMSA_id:79448 AF382111.1 bacterioplankton clone ZA2523c prokMSA_id:94147 AJ582030.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-GS-25 prokMSA_id:102657 AJ301631.1 Bradyrhizobium sp. str. ORS166 prokMSA_id:111950 AY904744.1 Bradyrhizobium elkanii str. SEMIA 6028 2.43.1.3.2.1.7502 OTU 1 seq prokMSA_id:32002 AF417544.1 Bradyrhizobium japonicum str. DASA12007 2.43.1.3.2.1.7522 OTU 1 seq prokMSA_id:59954 AF509906.1 Bradyrhizobium sp. str. KKI14 2.43.1.3.2.1.7631 OTU 1 seq prokMSA_id:4878 U09829.1 marine sediment clone JAP850 Rochelle 2.43.1.3.3 Hyphomicrobiaceae 99 seqs 2.43.1.3.3.1 sf_1 99 seqs 2.43.1.3.3.1.7389 OTU 5 seqs prokMSA_id:4611 X97692.1 Pedomicrobium americanum prokMSA_id:4612 X97693.1 Pedomicrobium australicum prokMSA_id:4614 X97694.1 Pedomicrobium australicum prokMSA_id:4615 X97695.1 Pedomicrobium sp. prokMSA_id:4618 X97690.1 Pedomicrobium ferrugineum 2.43.1.3.3.1.7409 OTU 1 seq prokMSA_id:41463 AF097800.2 sludge clone 1956 2.43.1.3.3.1.7422 OTU 1 seq prokMSA_id:28949 AF097806.2 sludge clone 49512 2.43.1.3.3.1.7428 OTU 2 seqs prokMSA_id:4624 AF097824.2 sludge clone 4953 prokMSA_id:50436 AF097812.2 sludge clone 49518 2.43.1.3.3.1.7447 OTU 1 seq prokMSA_id:34344 X53182.1 Hyphomicrobium vulgare 2.43.1.3.3.1.7473 OTU 1 seq prokMSA_id:56510 AY102318.1 heavy metal-contaminated soil clone a13111 2.43.1.3.3.1.7479 OTU 1 seq prokMSA_id:47454 AF198623.1 Hyphomicrobium chloromethanicum str. CM2 2.43.1.3.3.1.7505 OTU 1 seq prokMSA_id:4638 Y14313.1 Filomicrobium fusiforme str. DSM 5304 2.43.1.3.3.1.7506 OTU 1 seq prokMSA_id:4639 AF097786.2 sludge clone 1951 2.43.1.3.3.1.7530 OTU 1 seq prokMSA_id:4640 AF097815.2 sludge clone 49520 2.43.1.3.3.1.7641 OTU 16 seqs prokMSA_id:4620 AF098790.1 Hyphomicrobium sp. M3 prokMSA_id:4621 Y14311.1 Hyphomicrobium facile str. IFAM I-551 ATCC 27489 prokMSA_id:4622 Y14309.1 Hyphomicrobium facile str. H-526 prokMSA_id:4623 Y14312.1 Hyphomicrobium facile str. IFAM B522 prokMSA_id:4625 Y14310.1 Hyphomicrobium facile str. IFAM CO-582 ATCC 27492 prokMSA_id:4626 AB016812.1 Hyphomicrobium methylovorum str. MBIC3196 prokMSA_id:4627 Y14307.1 Hyphomicrobium methylovorum str. DSM 5458 prokMSA_id:25781 AF279788.1 Hyphomicrobium sp. str. S3 prokMSA_id:27497 AF312221.1 South Africa: KwaZulu-Natal Province Pietermaritzburg clone Y17-2 bacterium prokMSA_id:31209 AF148858.2 Hyphomicrobium sp. str. P2 prokMSA_id:40973 AF279789.1 Hyphomicrobium sp. str. S4 prokMSA_id:45287 AF156711.1 Hyphomicrobium sp. str. HM prokMSA_id:68656 AY081988.1 atrazine-catabolizing microbial absence methanol clone KRA30-08 prokMSA_id:79050 AJ536858.1 uranium mining waste pile soil clone JG30-KF-C30 prokMSA_id:108666 AJ854110.1 Hyphomicrobium sp. str. KDM4 prokMSA_id:108667 AJ854109.1 Hyphomicrobium sp. str. KDM2 2.43.1.3.3.1.7646 OTU 68 seqs prokMSA_id:4630 Y14303.1 Hyphomicrobium hollandicum str. IFAM KB-677 prokMSA_id:4632 Y14305.1 Hyphomicrobium zavarzinii str. ZV-622 prokMSA_id:4633 U59505.1 Hyphomicrobium sp. str. W1-1B prokMSA_id:4634 U59506.1 Hyphomicrobium zavarzinii str. ATCC 27495 prokMSA_id:4635 Y14304.1 Hyphomicrobium aestuarii prokMSA_id:4636 Y14302.1 Hyphomicrobium vulgare str. IFAM MC-750 ATCC 27500 prokMSA_id:4637 Y14306.1 Hyphomicrobium zavarzinii str. ZV-580 prokMSA_id:4641 U06473.1 Hyphomicrobium strain US-353 prokMSA_id:34544 AF234724.1 sludge clone A39 prokMSA_id:48462 AF279791.1 Hyphomicrobium sp. str. SAN-1 prokMSA_id:75991 AY159133.1 microbial biofilm with membrane-based water purification process clone MF_clone_16 prokMSA_id:88141 AY328572.1 drinking water system simulator clone HOClCi23 prokMSA_id:88156 AY328667.1 drinking water system simulator clone DSSF45 prokMSA_id:88254 AY328634.1 drinking water system simulator clone DSSF11 prokMSA_id:88268 AY328696.1 drinking water system simulator clone DSSF74 prokMSA_id:88276 AY328683.1 drinking water system simulator clone DSSF61 prokMSA_id:88295 AY328693.1 drinking water system simulator clone DSSF71 prokMSA_id:88300 AY328698.1 drinking water system simulator clone DSSF76 prokMSA_id:88334 AY328658.1 drinking water system simulator clone DSSF36 prokMSA_id:88439 AY328632.1 drinking water system simulator clone DSSF9 prokMSA_id:88523 AY328647.1 drinking water system simulator clone DSSF24 prokMSA_id:88718 AY328665.1 drinking water system simulator clone DSSF43 prokMSA_id:88787 AY328672.1 drinking water system simulator clone DSSF50 prokMSA_id:88837 AY328651.1 drinking water system simulator clone DSSF29 prokMSA_id:88846 AY328655.1 drinking water system simulator clone DSSF33 prokMSA_id:88869 AY328636.1 drinking water system simulator clone DSSF13 prokMSA_id:88935 AY328697.1 drinking water system simulator clone DSSF75 prokMSA_id:88983 AY328668.1 drinking water system simulator clone DSSF46 prokMSA_id:89077 AY328660.1 drinking water system simulator clone DSSF38 prokMSA_id:89164 AY328635.1 drinking water system simulator clone DSSF12 prokMSA_id:89239 AY328652.1 drinking water system simulator clone DSSF30 prokMSA_id:89275 AY328680.1 drinking water system simulator clone DSSF58 prokMSA_id:89336 AY328590.1 drinking water system simulator clone HOClCi41 prokMSA_id:89363 AY328638.1 drinking water system simulator clone DSSF15 prokMSA_id:89368 AY328666.1 drinking water system simulator clone DSSF44 prokMSA_id:89378 AY328656.1 drinking water system simulator clone DSSF34 prokMSA_id:89425 AY328699.1 drinking water system simulator clone DSSF77 prokMSA_id:89450 AY328687.1 drinking water system simulator clone DSSF65 prokMSA_id:89523 AY328643.1 drinking water system simulator clone DSSF20 prokMSA_id:89575 AY328625.1 drinking water system simulator clone DSSF2 prokMSA_id:89587 AY328654.1 drinking water system simulator clone DSSF32 prokMSA_id:89614 AY328664.1 drinking water system simulator clone DSSF42 prokMSA_id:89634 AY328648.1 drinking water system simulator clone DSSF25 prokMSA_id:89675 AY328700.1 drinking water system simulator clone DSSF78 prokMSA_id:89720 AY328659.1 drinking water system simulator clone DSSF37 prokMSA_id:89808 AY328645.1 drinking water system simulator clone DSSF22 prokMSA_id:89847 AY328567.1 drinking water system simulator clone HOClCi18 prokMSA_id:89989 AY328689.1 drinking water system simulator clone DSSF67 prokMSA_id:90155 AY328670.1 drinking water system simulator clone DSSF48 prokMSA_id:90179 AY328642.1 drinking water system simulator clone DSSF19 prokMSA_id:90261 AY328676.1 drinking water system simulator clone DSSF54 prokMSA_id:90264 AY328626.1 drinking water system simulator clone DSSF3 prokMSA_id:90267 AY328650.1 drinking water system simulator clone DSSF27 prokMSA_id:90330 AY328633.1 drinking water system simulator clone DSSF10 prokMSA_id:90337 AY328686.1 drinking water system simulator clone DSSF64 prokMSA_id:90374 AY328671.1 drinking water system simulator clone DSSF49 prokMSA_id:90460 AY328662.1 drinking water system simulator clone DSSF40 prokMSA_id:90517 AY328663.1 drinking water system simulator clone DSSF41 prokMSA_id:90622 AY328586.1 drinking water system simulator clone HOClCi37 prokMSA_id:90632 AY328695.1 drinking water system simulator clone DSSF73 prokMSA_id:90671 AY328624.1 drinking water system simulator clone DSSF1 prokMSA_id:90687 AY328657.1 drinking water system simulator clone DSSF35 prokMSA_id:90705 AY328690.1 drinking water system simulator clone DSSF68 prokMSA_id:90717 AY328629.1 drinking water system simulator clone DSSF6 prokMSA_id:90732 AY328684.1 drinking water system simulator clone DSSF62 prokMSA_id:90757 AY328669.1 drinking water system simulator clone DSSF47 prokMSA_id:97510 AY424825.1 Romania:Movile Cave clone mv13.4 prokMSA_id:100948 AY569281.1 pink microbial mat clone YJQ-3 2.43.1.3.4 Methylobacteriaceae 77 seqs 2.43.1.3.4.1 sf_1 77 seqs 2.43.1.3.4.1.6744 OTU 1 seq prokMSA_id:72323 AJ276806.1 Methylobacterium sp. str. LMG 19419 2.43.1.3.4.1.6782 OTU 1 seq prokMSA_id:4772 X74139.1 Methylobacterium sp. 2.43.1.3.4.1.7004 OTU 2 seqs prokMSA_id:58322 AY140237.1 Iron-oxidizing acidophile isolate str. Y005 Y005 prokMSA_id:81189 AY169421.1 Methylobacterium fujisawaense 2.43.1.3.4.1.7202 OTU 2 seqs prokMSA_id:49806 AF220762.1 Methylobacterium nodulans str. ORS1924 prokMSA_id:106864 AF220763.1 Methylobacterium nodulans str. ORS2060 2.43.1.3.4.1.7269 OTU 1 seq prokMSA_id:4791 Z23156.1 cooling coil biofilm isolate BF10 2.43.1.3.4.1.7271 OTU 1 seq prokMSA_id:4794 AB015566.1 deep-sea sediment clone BD5-10 2.43.1.3.4.1.7290 OTU 1 seq prokMSA_id:4797 Z23159.1 cooling coil coloniser isolate PC30.44 2.43.1.3.4.1.7449 OTU 8 seqs prokMSA_id:4781 M95655.1 Methylobacterium sp. 4 prokMSA_id:4784 D32229.1 Methylobacterium rhodinum prokMSA_id:4785 M95654.1 Methylobacterium sp. 3 prokMSA_id:4789 Z23158.1 cooling coil coloniser isolate PC30.39 prokMSA_id:4793 AJ223453.1 Methylobacterium sp. 6c prokMSA_id:4804 Z23160.1 cooling coil biofilm isolate BF15 prokMSA_id:37847 AF324201.2 Methylobacterium sp. V3 str. V23 prokMSA_id:77836 AB089094.1 termite gut homogenate clone Rs-A44 proteobacterium 2.43.1.3.4.1.7585 OTU 25 seqs prokMSA_id:4776 D32230.1 Methylobacterium zatmanii prokMSA_id:4780 L20847.1 Methylobacterium extorquens prokMSA_id:4782 D32224.1 Methylobacterium extorquens prokMSA_id:4783 D25305.1 Methylobacterium species prokMSA_id:4786 D32228.1 Methylobacterium rhodesianum prokMSA_id:4787 D25306.1 Methylobacterium species prokMSA_id:4788 U58018.1 Methylobacterium thiocyanatum str. ALL/SCN-P prokMSA_id:32399 AF395034.1 Methylobacterium sp. str. G296-15 prokMSA_id:42869 AF395030.1 Methylobacterium sp. str. TD4 prokMSA_id:43152 AF267912.1 Methylobacterium extorquens str. DSM 13060 F prokMSA_id:48113 AF148859.2 Methylobacterium sp. str. P1 prokMSA_id:52319 AF198624.1 Methylobacterium chloromethanicum str. CM4 prokMSA_id:55455 AF531770.1 Methylobacterium extorquens prokMSA_id:62973 AF526936.1 Mars Odyssey Orbiter and encapsulation facility clone 84-14 sp. prokMSA_id:68822 AF293375.1 Methylobacterium extorquens str. ATCC14718 prokMSA_id:84672 AY251818.1 Methylobacterium populi str. BJ001; ATCC BAA-705; NCIMB 13946 prokMSA_id:86781 AF514774.1 Methylobacterium podarium str. FM4 prokMSA_id:99624 AY468363.1 Methylobacterium podarium str. FM1 prokMSA_id:99777 AY468364.1 Methylobacterium podarium str. FM3 prokMSA_id:99963 AY728074.1 decayed velvetleaf seed clone S1-10-CL6 prokMSA_id:100714 AY436804.1 Methylobacterium sp. str. PM1 prokMSA_id:104257 AY468370.1 Methylobacterium sp. str. MM4 prokMSA_id:105313 AY436811.1 Methylobacterium sp. str. ST4.1 prokMSA_id:108038 AY770515.1 Methylobacterium sp. str. RKT-5 prokMSA_id:111792 AJ851086.1 Methylobacterium aminovorans str. CCM 4612T 2.43.1.3.4.1.7593 OTU 1 seq prokMSA_id:4807 D32226.1 Methylobacterium organophilum 2.43.1.3.4.1.7595 OTU 1 seq prokMSA_id:4808 AB024616.1 Methylobacterium sp. str. MBIC4305 MIF2 2.43.1.3.4.1.7605 OTU 1 seq prokMSA_id:68458 AF459799.1 Tetraponera binghami symbiont 2.43.1.3.4.1.7611 OTU 32 seqs prokMSA_id:4790 D32233.1 Methylobacterium species prokMSA_id:4795 D32232.1 Methylobacterium species prokMSA_id:4796 D32235.1 Methylobacterium species prokMSA_id:4798 D32231.1 Methylobacterium species prokMSA_id:4799 AJ250801.1 Methylobacterium fujisawaense str. DSM 5686 prokMSA_id:4800 D32227.1 Methylobacterium radiotolerans prokMSA_id:4801 D32237.1 Methylobacterium species prokMSA_id:4806 D32225.1 "Mesophilicum species" prokMSA_id:16540 AY038616.1 lacustrine subsurface sediment clone GL182.19 prokMSA_id:19442 AB074749.1 Japan:Lake Biwa isolate str. S-Su(1)-8E prokMSA_id:20530 AJ416978.1 Methylobacterium sp. A1 prokMSA_id:24700 AB074668.1 Japan:Lake Biwa isolate str. D-C(3)-20A prokMSA_id:25318 AJ400940.1 Methylobacterium sp. NI4 prokMSA_id:26317 AJ400919.1 Methylobacterium mesophilicum str. JCM 2829 prokMSA_id:29815 AF395035.1 Methylobacterium sp. str. G296-5 prokMSA_id:32868 X89904.1 Methylobacterium sp. str. PC30.38 (pink colony type) prokMSA_id:35133 AJ292612.1 PCB-polluted soil clone WD2113 prokMSA_id:77609 AB074616.1 pea aphid symbiont clone APe2_3 prokMSA_id:78782 AY177358.2 phenanthrene-degrading isolate str. 35 prokMSA_id:79023 AY177363.2 phenanthrene-degrading isolate str. M10 prokMSA_id:99179 AF408975.1 Methylobacterium sp. str. Ellin133 prokMSA_id:100400 AY436802.1 Methylobacterium sp. str. F5.4 prokMSA_id:100869 AY436805.1 Methylobacterium sp. str. RD4.1 prokMSA_id:101350 AY436808.1 Methylobacterium sp. str. SC4.6 prokMSA_id:101522 AJ785570.1 Methylobacterium hispanicum str. GR18 prokMSA_id:101606 AY741724.1 Methylobacterium sp. str. SKJH-1 prokMSA_id:102031 AY395353.1 pasture soil clone EB1034 prokMSA_id:103934 AY436790.1 Methylobacterium sp. str. C3 prokMSA_id:106584 AY622227.1 subsurface soil clone C-CF16 prokMSA_id:106967 AJ635304.1 Methylobacterium hispanicum str. GP34 prokMSA_id:108859 AY828570.1 Methylobacterium sp. str. P2E prokMSA_id:110238 AY616142.1 Methylobacterium radiotolerans str. P 2.43.1.3.5 Unclassified 79 seqs 2.43.1.3.5.1 sf_1 79 seqs 2.43.1.3.5.1.6707 OTU 1 seq prokMSA_id:32314 AJ294349.1 Chelatococcus asaccharovorans str. TE2 2.43.1.3.5.1.6711 OTU 1 seq prokMSA_id:82197 AY078053.1 Microvirga subterranea str. FaiI4; ATCC BAA-295; DSM 14364 2.43.1.3.5.1.7001 OTU 1 seq prokMSA_id:4616 AB015245.1 deepest cold-seep area Japan Trench clone JTB131 proteobacterium 2.43.1.3.5.1.7067 OTU 12 seqs prokMSA_id:4687 D25314.1 Blastochloris viridis prokMSA_id:4688 AF084495.1 Blastochloris viridis str. DSM 133 prokMSA_id:4689 AF084496.1 Blastochloris viridis str. UN prokMSA_id:4691 AF084498.1 Blastochloris viridis str. G3 prokMSA_id:4710 D86514.1 Blastochloris sulfoviridis str. DSM729 prokMSA_id:4711 AJ012089.1 Blastochloris sulfoviridis str. ToP1 prokMSA_id:4712 AF084510.1 Blastochloris viridis str. GI prokMSA_id:39566 AB033757.1 Blastochloris sulfoviridis str. GN1 prokMSA_id:63558 AY117148.1 Blastochloris sulfoviridis str. OK3G7 prokMSA_id:63559 AY117149.1 Blastochloris sulfoviridis str. Wai1bG3 prokMSA_id:63562 AY117150.1 Blastochloris sulfoviridis str. Wai3G1e prokMSA_id:78031 AJ401203.1 Blastochloris sp. AT2101 2.43.1.3.5.1.7143 OTU 37 seqs prokMSA_id:4810 X81044.1 Bosea thiooxidans BI-42 prokMSA_id:4811 U87773.1 Afipia genosp. 7 str. G8643 prokMSA_id:4812 U87774.1 Afipia genosp. 8 str. G8569 prokMSA_id:4813 U87775.1 Afipia genosp. 9 str. G8994 prokMSA_id:4814 U87776.1 Afipia genosp. 9 str. G8995 prokMSA_id:4815 U87777.1 Afipia genosp. 9 str. G8989 prokMSA_id:4816 U87778.1 Afipia genosp. 9 str. G8998 prokMSA_id:4817 U87779.1 Afipia genosp. 9 str. G8990 prokMSA_id:4820 AJ009482.1 anaerobic TCB-transforming consortium clone SJA-105 prokMSA_id:4821 AJ224610.1 Thiosulfate oxidizing isolate str. 5Z2111 prokMSA_id:4822 AJ250796.1 Bosea thiooxidans str. DSM 9653 prokMSA_id:4823 AJ250797.1 Bosea thiooxidans str. RpPl5-VS prokMSA_id:4824 AJ250798.1 Bosea thiooxidans str. RpPl3-VS prokMSA_id:4825 AJ250799.1 Bosea thiooxidans str. MGV6-VS prokMSA_id:4826 AJ250800.1 Bosea thiooxidans str. KB13-VS prokMSA_id:17030 AJ313022.1 Bosea sp. MN 51a prokMSA_id:24179 AF288306.1 Bosea vestrisii str. 34635 prokMSA_id:25399 AF288302.1 Bosea vestrisii str. 34620 prokMSA_id:27298 AF288307.1 Bosea massiliensis str. 34649 prokMSA_id:27741 AJ300771.1 Afipia sp. str. LMG 19832 prokMSA_id:29196 AF288300.1 Bosea eneae str. 34614 prokMSA_id:47211 AF288309.1 Bosea massiliensis str. 63287 prokMSA_id:47963 AF288308.1 Bosea vestrisii str. 63286 prokMSA_id:48650 AF273081.1 Bosea minatitlanensis str. AMX51 prokMSA_id:56322 AF508803.1 Bosea thiooxidans str. BI-42; DSM 9653; ATCC700366 prokMSA_id:61828 AF529334.1 PCE-contaminated site clone CLi38 prokMSA_id:66285 AF506054.1 Afipia sp. LCSAOTU26 prokMSA_id:66622 AY094498.1 extracted chamber connected to Ocean Drilling Program site 892b clone 8-2 proteobacterium prokMSA_id:68725 AF479379.1 glacial ice isolate str. M3C1.8K-TD7 prokMSA_id:69677 AF531764.2 Bosea sp. str. 7F prokMSA_id:76587 AY159140.1 microbial biofilm with membrane-based water purification process clone MF_clone_40 prokMSA_id:77260 AY159147.1 microbial biofilm with membrane-based water purification process clone MF_clone_121 prokMSA_id:103246 AY599671.1 fungal ascocarp clone Cl-1-TB8-II prokMSA_id:103396 AY599672.1 fungal ascocarp clone Cl-3-TB8 II prokMSA_id:103533 AY599673.1 fungal ascocarp clone Cl-2-TB8 II prokMSA_id:103667 AY599674.1 fungal ascocarp clone Cl-16-TB4-II prokMSA_id:106389 AJ536690.1 rice rhizoplane isolate str. RRP-E4 2.43.1.3.5.1.7151 OTU 2 seqs prokMSA_id:77288 AY167839.1 Chelatococcus asaccharovorans str. SAFR-017 prokMSA_id:78887 AB098515.1 Balneimonas flocculans str. TFB 2.43.1.3.5.1.7199 OTU 1 seq prokMSA_id:76517 AJ532683.1 uranium mill tailings clone Gitt-KF-194 2.43.1.3.5.1.7226 OTU 1 seq prokMSA_id:84103 AY221050.1 Mammoth cave clone CCM16b 2.43.1.3.5.1.7244 OTU 1 seq prokMSA_id:4714 AF050531.1 contaminated aquifer clone WCHB1-55 2.43.1.3.5.1.7255 OTU 16 seqs prokMSA_id:5259 AJ229247.1 anoxic bulk soil flooded rice microcosm isolate str. KCB90 prokMSA_id:16976 AJ387860.1 clone oxSCC-1 prokMSA_id:89447 AY297801.1 waterlogged archaeological wood clone pACH81 prokMSA_id:89669 AY297803.1 waterlogged archaeological wood clone pACH83 prokMSA_id:89687 AY297796.1 waterlogged archaeological wood clone pACH74 prokMSA_id:90170 AY297802.1 waterlogged archaeological wood clone pACH82 prokMSA_id:90320 AY297800.1 waterlogged archaeological wood clone pACH79 prokMSA_id:99893 AB174815.1 roots rice plants cultivated on paddy field isolate str. RR48 prokMSA_id:100048 AB174816.1 roots rice plants cultivated on paddy field isolate str. RR47 prokMSA_id:101363 AB127971.1 Kaistina methylovorans str. Y5 prokMSA_id:101532 AB127972.1 Kaistina koreensis str. Y9 prokMSA_id:104709 AB159680.1 Pleomorphomonas oryzae str. F-7 prokMSA_id:105004 AB159682.1 Pleomorphomonas oryzae str. B-25 prokMSA_id:105154 AB159683.1 Pleomorphomonas oryzae str. B-4 prokMSA_id:105316 AB159684.1 Pleomorphomonas oryzae str. B-18 prokMSA_id:105473 AB159685.1 Pleomorphomonas oryzae str. B-32 2.43.1.3.5.1.7264 OTU 1 seq prokMSA_id:66234 AF508112.1 Bosea thiooxidans TJ1 2.43.1.3.5.1.7306 OTU 1 seq prokMSA_id:26724 AF358017.1 peat soil microcosm clone LO13.3 2.43.1.3.5.1.7450 OTU 1 seq prokMSA_id:24441 AJ318107.1 Waste-gas biofilter clone BIaii16 2.43.1.3.5.1.7557 OTU 1 seq prokMSA_id:47708 AJ318194.1 Waste-gas biofilter clone BIvi26 2.43.1.3.5.1.7655 OTU 1 seq prokMSA_id:4819 AJ009451.1 anaerobic TCB-transforming consortium clone SJA-9 2.43.1.3.5.1.7659 OTU 1 seq prokMSA_id:60394 AF513446.1 Rhizobiaceae isolate str. LA52 2.43.1.3.6 Xanthobacteraceae 41 seqs 2.43.1.3.6.1 sf_1 41 seqs 2.43.1.3.6.1.6638 OTU 7 seqs prokMSA_id:4651 AJ224611.1 Thiosulfate oxidizing isolate str. TA1-AE1 TA1-AE1 prokMSA_id:4652 AJ224612.1 Thiosulfate oxidizing isolate str. TA12-21 TA12-21 prokMSA_id:4653 AJ224613.1 Thiosulfate oxidizing isolate str. TA1-A1 prokMSA_id:17276 AY056830.1 Ancylobacter rudongensis str. AS1.1761 prokMSA_id:81693 AY211516.1 Ancylobacter sp. str. DSM 2457 prokMSA_id:81868 AY211515.1 Ancylobacter sp. str. DSM 1277 prokMSA_id:82106 AY211514.1 Ancylobacter sp. str. DSM 1107 2.43.1.3.6.1.6660 OTU 23 seqs prokMSA_id:4671 X94199.1 Xanthobacter flavus prokMSA_id:4672 AJ224614.1 Thiosulfate oxidizing isolate str. TV6-2b prokMSA_id:4673 X94202.1 Xanthobacter flavus prokMSA_id:4674 X94204.1 Xanthobacter flavus prokMSA_id:4675 X94205.1 Xanthobacter flavus prokMSA_id:4676 X94206.1 Xanthobacter flavus prokMSA_id:4700 X99469.1 Xanthobacter tagetidis str. TagT2C prokMSA_id:4701 AJ224615.1 Thiosulfate oxidizing isolate str. Z2A-6A prokMSA_id:4702 AJ224616.1 Thiosulfate oxidizing isolate str. Z4A-2 prokMSA_id:4704 X94200.1 Azorhizobium caulinodans prokMSA_id:4708 D11342.1 Azorhizobium caulinodans prokMSA_id:4730 X67221.1 Azorhizobium caulinodans prokMSA_id:22038 AJ313028.1 Xanthobacter sp. MN 45.1 prokMSA_id:60723 AF532187.1 enrichment clone MCAA1 prokMSA_id:62751 AF399969.1 Xanthobacter aminoxidans str. 14a prokMSA_id:68682 AJ306541.1 Xanthobacter sp. str. INA43/2-2 (DSM 11820) sewage sludge INA43/2-2 prokMSA_id:86452 AB106864.1 Xanthobacter polyaromaticivorans str. 127W prokMSA_id:90457 AY307925.1 Xanthobacter sp. str. COX prokMSA_id:102466 AJ536687.1 bulk rice field soil isolate str. RBS3-84 prokMSA_id:102622 AJ536688.1 bulk rice field soil isolate str. RBS4-86 prokMSA_id:102778 AJ536689.1 bulk rice field soil isolate str. RBS4-92 prokMSA_id:103370 AY561848.1 Xanthobacter flavus prokMSA_id:114207 AY928243.1 isolate str. 5RO1 2.43.1.3.6.1.6855 OTU 1 seq prokMSA_id:43219 AF288311.1 isolate str. 76712 2.43.1.3.6.1.6971 OTU 1 seq prokMSA_id:79071 AY177367.2 Thiobacillus sp. str. 104 2.43.1.3.6.1.7017 OTU 2 seqs prokMSA_id:4661 D32247.1 Thiobacillus novellus prokMSA_id:38794 AF345551.1 Rhizobium sp. str. SDW045 2.43.1.3.6.1.7023 OTU 1 seq prokMSA_id:4663 X94198.1 Xanthobacter agilis 2.43.1.3.6.1.7283 OTU 1 seq prokMSA_id:4722 AF004845.1 Methylorhabdus multivorans str. DM13 2.43.1.3.6.1.7483 OTU 5 seqs prokMSA_id:4658 X94203.1 Xanthobacter autotrophicus prokMSA_id:24033 AB074717.1 Japan:Lake Biwa isolate str. S-C(2)-18A prokMSA_id:26549 AB074716.1 Japan:Lake Biwa isolate str. S-C(1)-18B2 prokMSA_id:62748 AF399970.1 Xanthobacter viscosus str. 7d prokMSA_id:112402 AJ878420.1 Xanthobacter autotrophicus str. 2 2.43.1.4 Caulobacterales 129 seqs 2.43.1.4.1 Caulobacteraceae 129 seqs 2.43.1.4.1.1 sf_1 129 seqs 2.43.1.4.1.1.6656 OTU 3 seqs prokMSA_id:5600 M83810.1 Caulobacter species prokMSA_id:5616 AB025196.1 Caulobacter sp. str. MBIC3983 P709B4-1 prokMSA_id:5621 AJ227799.1 Brevundimonas sp. str. MCS17 2.43.1.4.1.1.6668 OTU 1 seq prokMSA_id:30983 AJ292595.1 PCB-polluted soil clone WD233 2.43.1.4.1.1.6781 OTU 6 seqs prokMSA_id:5568 AJ007802.1 Brevundimonas intermedia str. ACM 2608 (T) prokMSA_id:5578 AB023784.1 Brevundimonas intermedia str. MBIC2712 ATCC15262 prokMSA_id:5603 AJ007801.1 Brevundimonas vesicularis str. ACM 2862 (T) prokMSA_id:5606 AJ222832.1 4-8 prokMSA_id:78340 AB074604.1 clone:APe2_20 clone APe2_20 prokMSA_id:78399 AB074605.1 clone:APe2_51 clone APe2_51 2.43.1.4.1.1.6814 OTU 1 seq prokMSA_id:48143 AF320339.1 USA: Rabbit Creek Yellowstone clone rcr_12 2.43.1.4.1.1.6904 OTU 16 seqs prokMSA_id:5571 AB021414.1 Brevundimonas vesicularis str. IAM 12105T prokMSA_id:5575 AJ227795.1 Brevundimonas sp. str. FWC14 prokMSA_id:5584 AJ227801.1 Brevundimonas sp. str. V4.BO.10 prokMSA_id:5585 AJ227790.1 Caulobacter sp. str. KA5 prokMSA_id:5589 AB016850.1 str. MBIC3034 SD-402 prokMSA_id:5590 AB016851.1 str. MBIC3032 SH-602 prokMSA_id:5591 AB016852.1 str. MBIC3033 YH-907 prokMSA_id:5592 AB016853.1 str. MBIC3036 PC5 prokMSA_id:5607 AJ001345.1 thin bent rods prokMSA_id:5611 AJ227781.1 Brevundimonas vesicularis str. LMG 11141 prokMSA_id:5613 AB016981.1 str. MBIC3029 PC2 prokMSA_id:20726 AJ431336.1 Brevundimonas sp. ikaite c3 prokMSA_id:46088 AF394174.1 simulated blackwater bioreactor isolate str. BW23 bacterium prokMSA_id:73480 AJ300773.1 Brevundimonas sp. str. LMG 19834 prokMSA_id:75508 AJ534668.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN37 proteobacterium prokMSA_id:82124 AY169433.1 Brevundimonas vesicularis 2.43.1.4.1.1.6909 OTU 18 seqs prokMSA_id:5572 M59064.1 Brevundimonas diminuta prokMSA_id:5593 X87274.1 Brevundimonas diminuta prokMSA_id:5596 AJ227778.1 Brevundimonas diminuta str. LMG 2089 (T) prokMSA_id:5597 AJ227779.1 Brevundimonas diminuta str. LMG 2337 prokMSA_id:5598 AB016847.1 Caulobacter sp. str. MBIC1405 prokMSA_id:5599 AB002633.1 deepest sea mud Mariana Trench clone prokMSA_id:5615 D12785.1 Mycoplana bullata prokMSA_id:5625 AB023428.1 Brevundimonas bullata str. MBIC2745 prokMSA_id:87601 AY293404.1 travertine terrace Yellowstone Hot Springs clone SM2A11 prokMSA_id:89703 AY328842.1 drinking water MB11 prokMSA_id:98944 AY695726.1 USA: New Mexico Carlsbad Lechuguilla Cave Rainbow Room clone RR3A9 prokMSA_id:100414 AY578913.1 Nitrobacteria iranicum str. 101 prokMSA_id:100802 AY689051.1 Mycoplana sp. str. 6C_11 prokMSA_id:103285 AY569007.1 Nitrobacteria hamadaniensis str. 104 prokMSA_id:107935 AB167225.1 Brevundimonas diminuta str. c66 prokMSA_id:107937 AB167229.1 Brevundimonas diminuta str. c79 prokMSA_id:110515 AJ717390.1 Brevundimonas bullata AC23 prokMSA_id:110830 AJ717389.1 Brevundimonas bullata AC4 2.43.1.4.1.1.6915 OTU 2 seqs prokMSA_id:5564 AB014055.1 Asticcacaulis biprosthecium str. MBIC3411 prokMSA_id:25580 AJ247193.1 Asticcacaulis biprosthecium str. DSM 4723(T) 2.43.1.4.1.1.6929 OTU 1 seq prokMSA_id:5508 Y18216.1 Phenylobacterium immobile str. E (T) 2.43.1.4.1.1.6930 OTU 1 seq prokMSA_id:19977 AJ292615.1 2.43.1.4.1.1.6953 OTU 2 seqs prokMSA_id:5512 AJ227767.1 Caulobacter sp. str. FWC21 prokMSA_id:21440 AF245033.1 soil metagenomic library clone 5C2 2.43.1.4.1.1.6968 OTU 1 seq prokMSA_id:5595 AB021415.1 Brevundimonas diminuta str. IAM 12691T 2.43.1.4.1.1.6977 OTU 1 seq prokMSA_id:17344 AF115501.1 Asticcacaulis biprosthecium str. AC-2 2.43.1.4.1.1.7112 OTU 1 seq prokMSA_id:5594 D49422.1 Brevundimonas diminuta str. IFO 3140 2.43.1.4.1.1.7134 OTU 1 seq prokMSA_id:52287 AF236003.1 isolate str. A0902 2.43.1.4.1.1.7231 OTU 1 seq prokMSA_id:54353 AJ292607.1 PCB-polluted soil clone WD297 2.43.1.4.1.1.7245 OTU 2 seqs prokMSA_id:46818 AB076664.1 Caulobacter sp. str. H62 prokMSA_id:77947 AB074623.1 pea aphid symbiont clone APe9_7 2.43.1.4.1.1.7257 OTU 1 seq prokMSA_id:55270 AJ459874.1 larval intestine clone D 2.43.1.4.1.1.7299 OTU 6 seqs prokMSA_id:5551 AJ227758.1 Caulobacter henricii str. ATCC 15253(T) prokMSA_id:5553 AJ227766.1 Caulobacter sp. str. FWC20 prokMSA_id:5558 AB008532.1 Caulobacter henricii str. ATCC15253 prokMSA_id:5560 AJ007805.1 Caulobacter henricii str. ACM 5105 (T) prokMSA_id:89320 AF523056.1 natural mineral water clone I-14 prokMSA_id:114371 AY928225.1 isolate str. BH98-202 2.43.1.4.1.1.7335 OTU 1 seq prokMSA_id:5517 X97079.1 species (isolate TM 16) clone 2.43.1.4.1.1.7355 OTU 1 seq prokMSA_id:75785 AJ518769.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-32 2.43.1.4.1.1.7359 OTU 13 seqs prokMSA_id:5579 AJ227782.1 Brevundimonas bacteroides str. CB7 prokMSA_id:5586 AJ227792.1 Caulobacter sp. str. CB28 prokMSA_id:5602 AB008513.1 Brevundimonas bacteroides str. ATCC15254 prokMSA_id:5618 AJ227793.1 Brevundimonas sp. str. FWC04 prokMSA_id:5619 AJ227794.1 Brevundimonas sp. str. FWC05 prokMSA_id:5626 AJ007808.1 Brevundimonas variabilis str. ACM 5107 (T) prokMSA_id:5627 AB008393.1 Brevundimonas subvibrioides subsp. albus str. ATCC15265 prokMSA_id:5628 AB008514.1 Brevundimonas bacteroides str. NCIMB9790 prokMSA_id:40068 AF296681.1 Brevundimonas alba str. 20 prokMSA_id:43186 AJ227783.1 Brevundimonas variabilis str. ATCC 15255 (T) prokMSA_id:69859 AY145541.1 Brevundimonas sp. str. AP-2 prokMSA_id:71758 AJ311963.1 central Baltic Sea water column clone OS-123B proteobacterium prokMSA_id:79008 AY177781.1 soil clone 2.43.1.4.1.1.7366 OTU 7 seqs prokMSA_id:5567 AB008392.1 Brevundimonas subvibrioides str. ATCC15264 prokMSA_id:5617 AJ227784.1 Brevundimonas subvibrioides str. CB81 prokMSA_id:5620 AJ227798.1 Brevundimonas sp. str. FWC43 prokMSA_id:5622 AJ227788.1 Caulobacter sp. str. CB66 prokMSA_id:5623 AJ227789.1 Caulobacter sp. str. CB26 prokMSA_id:5624 AJ227791.1 Caulobacter sp. str. CB35 prokMSA_id:31667 AJ295562.1 rape rhizosphere clone wr0066 2.43.1.4.1.1.7385 OTU 29 seqs prokMSA_id:5523 D13947.1 Mycoplana segnis prokMSA_id:5524 AB008531.1 Caulobacter vibrioides str. NCIMB9082 prokMSA_id:5525 AJ227756.1 Caulobacter vibrioides str. CB2 prokMSA_id:5526 AJ227761.1 Caulobacter sp. str. FWC06 prokMSA_id:5527 AJ227762.1 Caulobacter sp. str. FWC08 prokMSA_id:5528 AJ227763.1 Caulobacter sp. str. FWC16 prokMSA_id:5529 AJ227764.1 Caulobacter sp. str. FWC17 prokMSA_id:5530 AJ227765.1 Caulobacter sp. str. FWC18 prokMSA_id:5531 AJ227768.1 Caulobacter sp. str. FWC26 prokMSA_id:5532 AJ227769.1 Caulobacter sp. str. FWC28 prokMSA_id:5533 AJ227770.1 Caulobacter sp. str. FWC29 prokMSA_id:5534 AJ227771.1 Caulobacter sp. str. FWC31 prokMSA_id:5535 AJ227772.1 Caulobacter sp. str. FWC33 prokMSA_id:5536 AJ227773.1 Caulobacter sp. str. FWC35 prokMSA_id:5537 AJ227775.1 Caulobacter sp. str. FWC41 prokMSA_id:5538 AJ227776.1 Caulobacter sp. str. FWC42 prokMSA_id:5539 AJ227777.1 Caulobacter sp. str. FWC45 prokMSA_id:5540 AJ227754.1 Caulobacter vibrioides str. DSM 9893 prokMSA_id:5541 AJ227755.1 Caulobacter vibrioides str. ATCC 11764 prokMSA_id:5543 AJ009957.1 Caulobacter vibrioides str. CB51 prokMSA_id:5544 AB023427.1 Caulobacter segnis str. MBIC2835 prokMSA_id:5546 AF125194.1 Caulobacter vibrioides str. CB2 prokMSA_id:5548 AJ227760.1 Caulobacter sp. str. FWC02 prokMSA_id:36796 AJ318160.1 Waste-gas biofilter clone BImi11 prokMSA_id:44545 AJ227757.1 Caulobacter vibrioides str. CB15 prokMSA_id:47767 AY038618.1 lacustrine subsurface sediment clone GL182.16 prokMSA_id:74056 NC_002696.2 Caulobacter crescentus CB15 prokMSA_id:91213 AY345391.1 Green Lake water isolate str. G8 prokMSA_id:101545 AY444977.1 biofilm on oxygen-transfer membrane clone M15 2.43.1.4.1.1.7396 OTU 4 seqs prokMSA_id:5516 AJ227759.1 Caulobacter fusiformis str. ATCC 15257(T) prokMSA_id:5518 AJ007803.1 Caulobacter fusiformis str. ACM 5108 (T) prokMSA_id:5557 AB008533.1 Caulobacter fusiformis str. ATCC15257 prokMSA_id:47991 AJ295490.1 rape rhizosphere clone wr0031 2.43.1.4.1.1.7436 OTU 3 seqs prokMSA_id:5583 AJ227797.1 Brevundimonas sp. str. FWC40 prokMSA_id:21958 AF321018.2 Brevundimonas sp. str. GOBB3-212 prokMSA_id:63466 AJ495803.1 Brevundimonas sp. p22P 2.43.1.4.1.1.7486 OTU 2 seqs prokMSA_id:5563 AB016610.1 Asticcacaulis excentricus str. ATCC15261 prokMSA_id:24445 AJ247194.1 Asticcacaulis excentricus str. DSM 4724(T) 2.43.1.4.1.1.7549 OTU 1 seq prokMSA_id:50815 AF321197.1 USA: Rabbit Creek Yellowstone clone rcr_19 2.43.1.4.1.1.7562 OTU 1 seq prokMSA_id:5552 U87785.1 Afipia genosp. 14 str. G8999 2.43.1.4.1.1.7578 OTU 1 seq prokMSA_id:5554 AJ227774.1 Caulobacter sp. str. FWC38 2.43.1.4.1.1.7594 OTU 1 seq prokMSA_id:5562 AF115499.1 Asticcacaulis excentricus str. ATCC 15261 2.43.1.5 Consistiales 119 seqs 2.43.1.5.1 Caedibacteraceae 22 seqs 2.43.1.5.1.1 sf_3 19 seqs 2.43.1.5.1.1.6646 OTU 1 seq prokMSA_id:5921 U65509.1 shrimp hepatopancreatitis clone U65509 2.43.1.5.1.1.6807 OTU 12 seqs prokMSA_id:17960 AF422632.1 TCE-sediment clone d021 prokMSA_id:21627 AF422680.1 TCE-sediment clone d157 prokMSA_id:31003 AF422653.1 clone d047 prokMSA_id:35285 AF422687.1 TCE-sediment clone d163 prokMSA_id:36229 AF422667.1 clone d088 prokMSA_id:39067 AF422678.1 clone d155 prokMSA_id:40115 AF422642.1 clone d033 prokMSA_id:40501 AF422634.1 TCE-sediment clone d023 prokMSA_id:48292 AF422645.1 clone d037 prokMSA_id:49057 AF422640.1 clone d029 prokMSA_id:89350 AY328742.1 drinking water system simulator clone DSSD44 prokMSA_id:90210 AY328755.1 drinking water system simulator clone DSSD57 2.43.1.5.1.1.7010 OTU 1 seq prokMSA_id:74136 AJ428412.1 periodontal pocket clone 10B6 2.43.1.5.1.1.7580 OTU 4 seqs prokMSA_id:77697 AB089083.1 termite gut homogenate clone Rs-B07 proteobacterium prokMSA_id:77711 AB089087.1 termite gut homogenate clone Rs-H76 proteobacterium prokMSA_id:78262 AB089099.2 termite gut homogenate clone Rs-E51 proteobacterium prokMSA_id:78348 AB089088.1 termite gut homogenate clone Rs-D21 proteobacterium 2.43.1.5.1.1.7651 OTU 1 seq prokMSA_id:5918 X71837.1 Caedibacter caryophilus 2.43.1.5.1.2 sf_4 2 seqs 2.43.1.5.1.2.7157 OTU 2 seqs prokMSA_id:60700 AF533506.1 acid mine drainage clone ASL45 prokMSA_id:74301 AF533509.2 Candidatus Captivus acidiprotistae clone ASL6 2.43.1.5.1.3 sf_5 1 seq 2.43.1.5.1.3.6947 OTU 1 seq prokMSA_id:77922 AB089084.2 termite gut homogenate clone Rs-B60 proteobacterium 2.43.1.5.2 SAR11 57 seqs 2.43.1.5.2.1 sf_1 9 seqs 2.43.1.5.2.1.7376 OTU 9 seqs prokMSA_id:25036 AF114651.1 free-living marine recovered surface clone 2 prokMSA_id:30604 AB041288.1 clone ECS18 prokMSA_id:36382 AJ400351.1 f cytometric sorted marine sample subpopulation 3 clone ZD0410 bacterium prokMSA_id:48485 AF353214.1 marine clone Arctic95B-1 prokMSA_id:63102 AY093481.1 deep marine sediment clone MB-C2-128 prokMSA_id:68988 AY033303.1 marine bacterioplankton clone MB11D08 prokMSA_id:68990 AY033299.1 marine bacterioplankton clone MB11B07 prokMSA_id:70277 AF114645.1 free-living marine recovered surface clone 3 prokMSA_id:109461 AY700635.1 Australia: Great Barrier Reef clone PDM-OTU5 2.43.1.5.2.2 sf_2 48 seqs 2.43.1.5.2.2.6933 OTU 6 seqs prokMSA_id:31774 Z99997.1 freshwater clone LD12 prokMSA_id:52131 AF418965.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTH6 prokMSA_id:55574 AY145598.1 10e-9 dilution brackish s Weser estuary clone DC8-48-1 prokMSA_id:85388 AF534425.1 Toolik Lake main station at 3 m depth clone TLM01/TLMdgge14 proteobacterium prokMSA_id:99398 AY752103.1 lake water clone P38.43 prokMSA_id:99872 AB154304.1 freshwater clone S9D-28 2.43.1.5.2.2.7043 OTU 42 seqs prokMSA_id:5901 U75255.1 marine planktonic clone SAR203 prokMSA_id:22763 AF353223.1 marine clone Arctic95D-8 prokMSA_id:28898 AF355034.1 obtained depth 131m Arctic Ocean (SCICEX 96 cruise) clone Arctic96BD-18 prokMSA_id:37410 AF440726.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-56 prokMSA_id:38403 AF353225.1 marine clone Arctic97B-5 prokMSA_id:49361 AY033327.1 prokMSA_id:52749 AF353215.1 marine clone Arctic95C-7 prokMSA_id:52927 AF151273.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-150-3 prokMSA_id:52960 AF151234.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone A2-021-5 prokMSA_id:53045 AF151270.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-050-10 prokMSA_id:53061 AF151233.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone A2-021-4 prokMSA_id:53077 AF151230.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone A2-021-1 prokMSA_id:53187 AF151267.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-050-7 prokMSA_id:53603 AF151275.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-150-5 prokMSA_id:53959 AF151296.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M7-400-1 prokMSA_id:54108 AF151220.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone A1-010-1 prokMSA_id:54269 AF151277.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-450-2 prokMSA_id:54805 AF151278.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M3-450-3 prokMSA_id:64899 AY095881.1 prokMSA_id:64998 AY095907.1 prokMSA_id:65024 AY095824.1 prokMSA_id:65123 AY095687.1 prokMSA_id:65137 AY095669.1 prokMSA_id:65193 AY095565.1 prokMSA_id:65196 AY095562.1 prokMSA_id:65201 AY095557.1 prokMSA_id:77856 AY171341.1 marine sediment clone s77 prokMSA_id:80272 AY220722.1 water column Porcupine Abyssal Plain Northeast Atlantic Ocean clone WCPAP18 prokMSA_id:92826 AY354830.1 coastal seawater during phytoplankton bloom clone PLY-P1-114 prokMSA_id:102110 AB186968.1 Mariana trough hydrothermal vent water 0.2micro-m filterable fraction clone MT-NB05 prokMSA_id:102389 AY458637.2 marine waters clone EBAC750-02H05 prokMSA_id:105366 AB187002.1 Suiyo seamount hydrothermal vent water 0.2micro-m filterable fraction clone SSM-NB19 prokMSA_id:107205 AB186991.1 Suiyo seamount hydrothermal vent water 0.2micro-m filterable fraction clone SSM-NB03 prokMSA_id:107253 AB186979.1 Mariana trough hydrothermal vent water 0.2micro-m filterable fraction clone MT-NB22 prokMSA_id:107419 AACY01081069.1 Sargasso Sea prokMSA_id:108796 AB193879.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT793-NB04 prokMSA_id:108804 AB193887.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT793-NB12 prokMSA_id:108806 AB193889.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT793-NB14 prokMSA_id:108826 AB193902.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT797-NB10 prokMSA_id:108874 AB193916.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM263-NB07 prokMSA_id:108885 AB193924.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM263-NB15 prokMSA_id:109465 AY700641.1 Australia: Great Barrier Reef clone PDW-OTU4 2.43.1.5.3 Unclassified 40 seqs 2.43.1.5.3.1 sf_4 8 seqs 2.43.1.5.3.1.6810 OTU 1 seq prokMSA_id:68974 AY033325.1 marine bacterioplankton clone MB13F01 2.43.1.5.3.1.7105 OTU 7 seqs prokMSA_id:60623 AF406553.1 bacterioplankton clone AEGEAN_248 prokMSA_id:60650 AF406522.1 bacterioplankton clone AEGEAN_239 prokMSA_id:60651 AF406521.1 bacterioplankton clone AEGEAN_230 prokMSA_id:60657 AF406515.1 bacterioplankton clone AEGEAN_187 prokMSA_id:60660 AF406514.1 bacterioplankton clone AEGEAN_107 prokMSA_id:102345 AB186982.1 Mariana trough hydrothermal vent water 0.2micro-m filterable fraction clone MT-NB25 prokMSA_id:108817 AB193893.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT797-NB01 2.43.1.5.3.2 sf_5 32 seqs 2.43.1.5.3.2.6735 OTU 20 seqs prokMSA_id:5889 U13159.1 marine clone PLY43 prokMSA_id:5898 U75649.1 marine planktonic clone SAR193 prokMSA_id:23331 AF353227.1 marine clone Arctic95A-16 prokMSA_id:33310 AF353211.1 marine clone Arctic96B-10 prokMSA_id:33797 AF353208.1 marine clone Arctic96A-20 prokMSA_id:40239 AF327027.1 arctic bacterioplankton clone AWS98-19a prokMSA_id:40986 AF353209.1 marine clone Arctic96B-3 prokMSA_id:43576 AF353210.1 marine clone Arctic97C-1 prokMSA_id:53945 AF151297.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M7-400-2 prokMSA_id:61204 AF510192.1 Candidatus Pelagibacter ubique prokMSA_id:61205 AF510191.1 Candidatus Pelagibacter ubique prokMSA_id:64906 AY095873.1 prokMSA_id:68977 AY033320.1 marine bacterioplankton clone MB13H04 prokMSA_id:68985 AY033306.1 marine bacterioplankton clone MB11E07 prokMSA_id:79196 AF382131.1 bacterioplankton clone ZA3911c prokMSA_id:79390 AF382134.1 bacterioplankton clone ZA3320c prokMSA_id:82782 AY274843.1 Delaware River estuary clone 3G9 prokMSA_id:84240 AY274842.1 Delaware River estuary clone C35 prokMSA_id:86470 AY274867.1 Delaware River estuary clone 1A3 prokMSA_id:108863 AB193906.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT797-NB14 2.43.1.5.3.2.6788 OTU 3 seqs prokMSA_id:35677 AF388881.1 clone GOBB3-CL243 prokMSA_id:50807 AF353226.1 marine clone Arctic96A-7 prokMSA_id:88223 AY317115.1 Skagerrak seawater clone 2.43.1.5.3.2.6811 OTU 2 seqs prokMSA_id:34714 U81532.1 sampling site Northwest Pacific Ocean California Current; 32 51.6 N 118 deg. 55.1 min. W 500 m depth clone p712-15 prokMSA_id:68975 AY033322.1 marine bacterioplankton clone MB21A02 2.43.1.5.3.2.7122 OTU 1 seq prokMSA_id:5897 U70686.1 marine clone OM155 2.43.1.5.3.2.7203 OTU 1 seq prokMSA_id:24388 AF353212.1 marine clone Arctic96AD-8 2.43.1.5.3.2.7206 OTU 1 seq prokMSA_id:5903 U75257.1 marine planktonic clone SAR220 2.43.1.5.3.2.7210 OTU 1 seq prokMSA_id:5902 U75256.1 marine planktonic clone SAR211 2.43.1.5.3.2.7504 OTU 1 seq prokMSA_id:60628 AF406547.1 bacterioplankton clone AEGEAN_233 2.43.1.5.3.2.7592 OTU 1 seq prokMSA_id:68982 AY033312.1 marine bacterioplankton clone MB12A07 2.43.1.5.3.2.7608 OTU 1 seq prokMSA_id:5904 U75258.1 marine planktonic clone SAR241 2.43.1.6 Devosia 5 seqs 2.43.1.6.1 Unclassified 5 seqs 2.43.1.6.1.1 sf_1 5 seqs 2.43.1.6.1.1.7190 OTU 1 seq prokMSA_id:31502 AY048890.1 rhizosphere clone L3-17C4 2.43.1.6.1.1.7298 OTU 1 seq prokMSA_id:84123 AY239006.1 aggregates water column German Wadden Sea part North Sea isolate str. HP22 2.43.1.6.1.1.7498 OTU 1 seq prokMSA_id:5403 AJ229177.1 anoxic rice paddy soil clone BSV03 2.43.1.6.1.1.7626 OTU 2 seqs prokMSA_id:23947 AJ252721.1 Potato plant root RC-III-45 () clone RC-III-45 prokMSA_id:57724 AF469072.1 Devosia neptuniae str. J1 2.43.1.7 Ellin314/wr0007 17 seqs 2.43.1.7.1 Unclassified 17 seqs 2.43.1.7.1.1 sf_1 17 seqs 2.43.1.7.1.1.6640 OTU 1 seq prokMSA_id:44956 AJ295468.1 rhizosphere clone wr0007 2.43.1.7.1.1.6758 OTU 8 seqs prokMSA_id:33368 AJ295561.1 rhizosphere clone wr0200 prokMSA_id:58087 AF498743.1 soil isolate Ellin361 prokMSA_id:58088 AF498742.1 soil isolate Ellin360 prokMSA_id:58109 AF498715.1 soil isolate Ellin333 prokMSA_id:75071 AJ519623.1 Uranium mill tailings soil sample clone Sh765B-TzT-31 proteobacterium prokMSA_id:93885 AJ581587.1 Soil collected near non-ferrous metal smelting factory KCM clone KCM-B-42 prokMSA_id:111694 AY234419.1 soil isolate Ellin5002 prokMSA_id:112250 AY234547.1 soil isolate Ellin5130 2.43.1.7.1.1.6793 OTU 1 seq prokMSA_id:44738 AF292999.1 ferromanganous micronodule clone MND8 2.43.1.7.1.1.6823 OTU 1 seq prokMSA_id:75186 AJ532704.1 uranium mining waste pile clone JG34-KF-245 proteobacterium 2.43.1.7.1.1.7103 OTU 1 seq prokMSA_id:37026 AF423211.1 soil clone 1152-2 2.43.1.7.1.1.7123 OTU 3 seqs prokMSA_id:75429 AJ534613.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-23 prokMSA_id:75684 AJ534620.1 soil uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-195 prokMSA_id:76595 AJ518774.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-102 2.43.1.7.1.1.7222 OTU 1 seq prokMSA_id:60574 AF407727.1 Great Artesian Basin clone B79 2.43.1.7.1.1.7437 OTU 1 seq prokMSA_id:84082 AY221056.1 Mammoth cave clone CCM21a 2.43.1.8 Ellin329/Riz1046 4 seqs 2.43.1.8.1 Unclassified 4 seqs 2.43.1.8.1.1 sf_1 4 seqs 2.43.1.8.1.1.6945 OTU 1 seq prokMSA_id:74124 AB081581.1 rhizosphere isolate A48 2.43.1.8.1.1.7182 OTU 2 seqs prokMSA_id:58110 AF498714.1 soil isolate Ellin332 prokMSA_id:58112 AF498711.1 soil isolate Ellin329 2.43.1.8.1.1.7194 OTU 1 seq prokMSA_id:58086 AF498744.1 soil isolate Ellin362 2.43.1.9 Fulvimarina 6 seqs 2.43.1.9.1 Unclassified 6 seqs 2.43.1.9.1.1 sf_1 6 seqs 2.43.1.9.1.1.7205 OTU 3 seqs prokMSA_id:19620 U53824.1 Manganese-oxidizing isolate str. SI85-9A1 prokMSA_id:50645 AJ278784.1 Arctic seawater isolate str. R7951 prokMSA_id:77748 AY178863.1 Fulvimarina litoralis str. HTCC2156 2.43.1.9.1.1.7281 OTU 3 seqs prokMSA_id:77696 AY178861.1 Fulvimarina pelagi str. HTCC2615 prokMSA_id:77742 AY178862.1 Fulvimarina pelagi str. HTCC2619 prokMSA_id:77907 AY178860.1 Fulvimarina pelagi str. HTCC2506 2.43.2 Betaproteobacteria 2103 seqs 2.43.2.1 Burkholderiales 1618 seqs 2.43.2.1.1 Alcaligenaceae 163 seqs 2.43.2.1.1.1 sf_1 163 seqs 2.43.2.1.1.1.7680 OTU 1 seq prokMSA_id:73771 AF371863.1 phylotype OTU-336 swine intestine clone p-3623-18B3 2.43.2.1.1.1.7700 OTU 11 seqs prokMSA_id:18037 AF133538.1 Oligella urethralis str. CIP 103 116 prokMSA_id:31943 AJ247262.2 Oligella urethralis str. DSM 7531 prokMSA_id:70363 AJ251911.1 Oligella urethralis str. LMG 1015 prokMSA_id:71251 AF227163.1 Oligella urethralis str. ATCC17960 prokMSA_id:72841 AJ247263.2 Oligella urethralis str. Oslo C1098 prokMSA_id:82610 AY244768.1 Oligella urethralis str. 2002-2302677 prokMSA_id:84552 AY178994.1 Oligella urethralis str. COH-1 prokMSA_id:98987 AY513497.1 Oligella urethralis str. 2002020954 prokMSA_id:99145 AY513498.1 Oligella urethralis str. 2001034309 prokMSA_id:99297 AY513499.1 Oligella urethralis str. 2003015904 prokMSA_id:107798 AY513496.1 Oligella urethralis str. 2001034128 2.43.2.1.1.1.7731 OTU 1 seq prokMSA_id:6833 X86580.1 Acinetobacter sp. 2.43.2.1.1.1.7732 OTU 1 seq prokMSA_id:6838 X86588.1 Alcaligenes sp. str. 15-58 2.43.2.1.1.1.7737 OTU 1 seq prokMSA_id:68624 AY081977.1 atrazine-catabolizing microbial presence methanol clone KRA30+06A 2.43.2.1.1.1.7764 OTU 1 seq prokMSA_id:62502 AF513937.1 Alcaligenaceae clone LA1-B29N 2.43.2.1.1.1.7768 OTU 1 seq prokMSA_id:38105 AF371864.1 phylotype OTU-204 swine intestine clone p-861-a5 2.43.2.1.1.1.7780 OTU 1 seq prokMSA_id:6858 Y07585.1 Drentse grassland soil clone DA014 2.43.2.1.1.1.7781 OTU 1 seq prokMSA_id:6859 AJ133493.2 Alcaligenes sp. CCUG 36768 2.43.2.1.1.1.7788 OTU 1 seq prokMSA_id:73994 AY081994.1 atrazine-catabolizing microbial absence methanol clone KRA30-58 2.43.2.1.1.1.7802 OTU 1 seq prokMSA_id:6860 L29265.1 Blastocrithidia culicis Endosymbiont 2.43.2.1.1.1.7833 OTU 3 seqs prokMSA_id:24220 AF282916.1 Pigmentiphaga kullae str. K24 prokMSA_id:62876 AB088856.1 Pigmentiphaga sp. str. NDS-1 prokMSA_id:72020 AF394170.1 simulated blackwater bioreactor isolate str. BW5 bacterium 2.43.2.1.1.1.7838 OTU 11 seqs prokMSA_id:6845 AJ005447.1 Alcaligenes defragrans str. 54Pin prokMSA_id:6846 U82826.1 Alcaligenes sp. str. NKNTAU prokMSA_id:6850 AB021360.1 strain isolate str. rA9 prokMSA_id:6851 AJ005448.1 Alcaligenes defragrans str. 51Men prokMSA_id:6852 AJ005449.1 Alcaligenes defragrans str. 62Car prokMSA_id:6853 AJ005450.1 Alcaligenes defragrans str. 65Phen prokMSA_id:66241 AF508102.1 Alcaligenes defragrans TJ4 prokMSA_id:66242 AF508100.1 Alcaligenes defragrans N1 prokMSA_id:66243 AF508101.1 Alcaligenes defragrans TG26 prokMSA_id:72856 AF150694.1 Elbe River snow isolate Iso14 Iso14_1214 prokMSA_id:108774 AB195161.1 Alcaligenes defragrans str. PD-19 2.43.2.1.1.1.7840 OTU 3 seqs prokMSA_id:6824 AF067729.1 Taylorella asinigenitalis str. UCD-1 prokMSA_id:30921 AF297174.1 Taylorella asinigenitalis str. UK-1 prokMSA_id:48585 AF297175.1 Taylorella asinigenitalis str. UK-2 2.43.2.1.1.1.7868 OTU 2 seqs prokMSA_id:6825 Y11890.1 Pelistega europaea str. LMG 10982 prokMSA_id:6840 AF190911.1 Pelistega europaea str. LMG15725 2.43.2.1.1.1.7874 OTU 1 seq prokMSA_id:26472 AF224846.1 clone Car117fc 2.43.2.1.1.1.7881 OTU 16 seqs prokMSA_id:6823 X68645.1 Taylorella equigenitalis prokMSA_id:18745 AF297172.1 Taylorella equigenitalis str. 10783 prokMSA_id:27919 AB066372.1 Taylorella equigenitalis str. EQ59 prokMSA_id:29584 AF297173.1 Taylorella equigenitalis str. 96-178 prokMSA_id:33535 AB069660.1 Taylorella equigenitalis str. Kentucky 188 prokMSA_id:47850 AF408197.1 Taylorella equigenitalis str. NCTC11184 prokMSA_id:111382 AB200398.1 Taylorella equigenitalis str. Fr-1 prokMSA_id:111432 AB200403.1 Taylorella equigenitalis str. SS28 prokMSA_id:111468 AB200399.1 Taylorella equigenitalis str. Fr-2 prokMSA_id:111480 AB200400.1 Taylorella equigenitalis str. Fr-9 prokMSA_id:111706 AB200405.1 Taylorella equigenitalis str. CEMO13 prokMSA_id:111881 AB200406.1 Taylorella equigenitalis str. CEMO14 prokMSA_id:111977 AB200402.1 Taylorella equigenitalis str. EQ70 prokMSA_id:112112 AB200401.1 Taylorella equigenitalis str. Fr-10 prokMSA_id:112127 AB200397.1 Taylorella equigenitalis str. HH139 prokMSA_id:112187 AB200404.1 Taylorella equigenitalis str. CEMO12 2.43.2.1.1.1.7902 OTU 21 seqs prokMSA_id:6864 AF155147.1 Alcaligenes faecalis str. M3A prokMSA_id:18554 AF407382.1 MCB-contaminated groundwater-treating reactor clone RB7C3 prokMSA_id:19516 AF423224.1 soil clone 1392-1 prokMSA_id:25009 AJ277669.1 Alcaligenes faecalis prokMSA_id:28612 AF407379.1 MCB-contaminated groundwater-treating reactor clone RA7C9 prokMSA_id:29960 AF407389.1 MCB-contaminated groundwater-treating reactor clone Ra9C2 prokMSA_id:31266 AF407380.1 MCB-contaminated groundwater-treating reactor clone RA7C16 prokMSA_id:51247 AF407414.1 MCB-contaminated groundwater-treating reactor clone RB13C11 prokMSA_id:74694 AJ242986.1 Alcaligenes faecalis subsp. parafaecalis str. G subsp. prokMSA_id:81261 AY214174.1 benzene-contaminated groundwater clone ZZ9C4 prokMSA_id:81518 AY214197.1 benzene-contaminated groundwater clone ZZ14AC6 prokMSA_id:82057 AY214192.1 benzene-contaminated groundwater clone ZZ14C6 prokMSA_id:88201 AY296716.1 Alcaligenes sp. str. 2-1 prokMSA_id:88431 AY296717.1 Alcaligenes sp. str. 2-6 prokMSA_id:92941 AY346138.1 Alcaligenes sp. str. IS-17 prokMSA_id:92976 AY346136.1 Alcaligenes sp. str. IS-46 prokMSA_id:93023 AY346139.1 Alcaligenes sp. str. IS-33 prokMSA_id:93083 AY346140.1 Alcaligenes sp. str. IS-67 prokMSA_id:99705 AY667065.1 Alcaligenes faecalis str. BC2001 prokMSA_id:102983 AY628412.1 Alcaligenes sp. str. YcX-20 prokMSA_id:110284 AY548384.1 Alcaligenes faecalis str. WM2072 2.43.2.1.1.1.7932 OTU 9 seqs prokMSA_id:6869 AJ002802.1 Alcaligenes sp. 151 prokMSA_id:47955 AF407199.1 MCB-contaminated groundwater-treating reactor clone GIF8 prokMSA_id:64740 AJ278451.1 Achromobacter subsp. denitrificans str. DSM 30026 (T) prokMSA_id:67343 AF494543.1 Benzopyrene-degrading isolate str. BPC7 prokMSA_id:73293 AJ306836.1 Portugal clone prokMSA_id:78362 AY170847.1 Achromobacter insolitus str. LMG 6003 prokMSA_id:90397 AY283260.1 Alcaligenes sp. str. PCNB-2 prokMSA_id:100573 AY635878.1 Achromobacter sp. clone AMC1 prokMSA_id:107100 AY631060.1 Achromobacter xylosoxidans str. TKW4 2.43.2.1.1.1.7961 OTU 1 seq prokMSA_id:41229 AJ315485.1 isolate HuCC33 clone 2.43.2.1.1.1.7970 OTU 2 seqs prokMSA_id:6821 L37786.1 Sutterella wadsworthia prokMSA_id:6822 L37785.1 Sutterella wadsworthia 2.43.2.1.1.1.7984 OTU 1 seq prokMSA_id:26755 AJ318125.1 Waste-gas biofilter clone BIfciii38 2.43.2.1.1.1.7992 OTU 16 seqs prokMSA_id:6878 AJ002804.1 Alcaligenes sp. 159 prokMSA_id:6893 AB015607.1 Bordetella sp. str. KP22 prokMSA_id:20845 AF225979.1 Achromobacter subsp. xylosoxidans prokMSA_id:21204 AF439314.1 Achromobacter subsp. xylosoxidans str. A19 prokMSA_id:26123 AY027506.1 Arsenite-oxidizing 'Alcaligenes fecalis (HLE)' 'Alcaligenes prokMSA_id:32178 AY027504.1 Arsenite-oxidizing BEN-4 prokMSA_id:33221 AY038619.1 lacustrine subsurface sediment clone GL182.6 prokMSA_id:40974 AF394171.1 simulated blackwater bioreactor isolate str. BW6 bacterium prokMSA_id:42554 AF411020.1 Achromobacter xylosoxidans str. AU1011 prokMSA_id:55338 AF531768.1 Achromobacter xylosoxidans prokMSA_id:77844 AJ491844.1 Achromobacter xylosoxidans str. E prokMSA_id:78111 AJ491846.1 Achromobacter xylosoxidans str. H prokMSA_id:78128 AJ491840.1 Achromobacter xylosoxidans str. A2 prokMSA_id:78208 AY170848.1 Achromobacter spanius str. LMG 5911 prokMSA_id:83269 AJ508999.1 Alcaligenes faecalis 6818m-E prokMSA_id:84201 AJ509012.1 Alcaligenes faecalis 5659-H 2.43.2.1.1.1.7998 OTU 1 seq prokMSA_id:6876 L29303.1 Bacterial endosymbiont 2.43.2.1.1.1.8010 OTU 43 seqs prokMSA_id:6843 U04949.1 Bordetella parapertussis prokMSA_id:6847 AB021336.1 strain isolate str. rM1 prokMSA_id:6848 AB021351.1 strain isolate str. rM16 prokMSA_id:6849 AB021352.1 strain isolate str. rM17 prokMSA_id:6857 X92415.1 Alcaligenes sp. str. L6 prokMSA_id:6870 AJ002808.1 Alcaligenes sp. R5 prokMSA_id:6871 AB010840.1 ATCC15749 prokMSA_id:6872 U04820.2 Bordetella holmesii prokMSA_id:6875 U04950.1 Bordetella pertussis prokMSA_id:6877 X57026.1 Bordetella bronchiseptica prokMSA_id:6879 AJ002809.1 Alcaligenes sp. R6 prokMSA_id:6886 AB010841.1 ATCC43552 prokMSA_id:6887 AJ224990.1 closest relative Alcaligenes xylosoxidans clone GKS98 prokMSA_id:6888 U80417.1 Alcaligenes sp. 3-17 prokMSA_id:6889 AF142326.1 Bordetella pertussis str. Tohama; CIP 81.32 prokMSA_id:6890 AF142327.1 Bordetella pertussis str. CIP 105.894 prokMSA_id:6891 D88005.1 Achromobacter subsp. xylosoxidans str. IAM12684 prokMSA_id:18218 AF177667.1 Bordetella hinzii str. LMG 13501T prokMSA_id:18270 AJ278452.1 Bordetella bronchiseptica str. DSM 10303 prokMSA_id:18382 AF469002.1 Bordetella holmesii prokMSA_id:19435 AJ290001.1 Germany: Lake Fuchskuhle north basin clone FukuN65 FukuN65 prokMSA_id:25458 E06073.1 Bordetella bronchiseptica prokMSA_id:26037 AF177666.1 Bordetella avium prokMSA_id:28965 AF232712.1 Achromobacter subsp. denitrificans str. EST4002 prokMSA_id:30978 AY027500.1 Arsenite-oxidizing NT-10 prokMSA_id:32410 AB046605.1 Alcaligenes sp. str. STC1 prokMSA_id:37958 AB039335.1 Bordetella sp. str. M1-6 prokMSA_id:38214 AJ277798.1 Bordetella trematum str. DSM 11334 (T) prokMSA_id:39920 AF366579.1 Bordetella holmesii str. B436 prokMSA_id:40719 AF143843.1 hydrocarbon-degrading consortium clone AF2.3 prokMSA_id:43556 AB076884.1 Achromobacter sp. clone:TSL-20 clone TSL-20 sp. prokMSA_id:43620 AJ278450.1 Bordetella parapertussis str. DSM 4922 prokMSA_id:46142 AB076883.1 Achromobacter sp. clone:TSL-17 clone TSL-17 sp. prokMSA_id:53451 AF366578.1 Bordetella parapertussis str. B1232 prokMSA_id:68615 AY081985.1 atrazine-catabolizing microbial presence methanol clone KRA30+18 prokMSA_id:68617 AY081983.1 atrazine-catabolizing microbial presence methanol clone KRA30+16 prokMSA_id:68622 AY081979.1 atrazine-catabolizing microbial presence methanol clone KRA30+11 prokMSA_id:68623 AY081976.1 atrazine-catabolizing microbial presence methanol clone KRA30+05 prokMSA_id:73213 AF511432.1 Alcaligenes sp. CCCO7 prokMSA_id:78940 AJ534850.1 Alcaligenes sp. DW104 prokMSA_id:80939 AY189752.1 Achromobacter xylosoxidans str. M-4 prokMSA_id:85429 AF534426.1 Toolik Lake main station at 3 m depth clone TLM02/TLMdgge21 proteobacterium prokMSA_id:86163 AY244788.1 Achromobacter xylosoxidans str. 2002-65601 2.43.2.1.1.1.8016 OTU 1 seq prokMSA_id:27017 AF316744.1 Crater Lake clone CL0-83 2.43.2.1.1.1.8062 OTU 1 seq prokMSA_id:22985 AJ277742.1 Brackiella oedipodis str. LMG 1945 R8846 2.43.2.1.1.1.8063 OTU 1 seq prokMSA_id:6892 AJ004688.1 Alcaligenes sp. str. D2 2.43.2.1.1.1.8094 OTU 1 seq prokMSA_id:56470 AF430122.1 Alcaligenes sp. str. VKM B-2263 dcm6 2.43.2.1.1.1.8100 OTU 1 seq prokMSA_id:7123 D88007.1 Alcaligenes latus str. IAM12599 2.43.2.1.1.1.8157 OTU 7 seqs prokMSA_id:6856 Y12639.1 Denitrobacter permanens prokMSA_id:6881 X86584.1 Acinetobacter sp. prokMSA_id:6882 X86589.1 Acinetobacter sp. prokMSA_id:6883 X86590.1 Acinetobacter sp. prokMSA_id:25170 AJ318171.1 Waste-gas biofilter clone BIrii6 prokMSA_id:55861 AJ412686.1 Alcaligenes sp. str. I prokMSA_id:64879 AJ412685.1 Alcaligenes sp. str. H 2.43.2.1.2 Burkholderiaceae 280 seqs 2.43.2.1.2.1 sf_1 280 seqs 2.43.2.1.2.1.7708 OTU 7 seqs prokMSA_id:39961 AJ302311.1 Burkholderia tuberum str. STM678 prokMSA_id:98914 AY178070.1 Burkholderia sp. Clong3 Clong 3 prokMSA_id:99066 AY178071.1 Burkholderia sp. Cpub6 Cpub 6 prokMSA_id:99229 AY178072.1 Burkholderia sp. CI3 CI 3 prokMSA_id:99296 AY528706.1 Burkholderia sp. mcas7.1 str. Mcas7.1 prokMSA_id:99691 AY178075.1 Burkholderia sp. UCT 70 prokMSA_id:104217 AY178069.1 Burkholderia sp. CI2 2.43.2.1.2.1.7720 OTU 1 seq prokMSA_id:81664 AY218566.1 penguin droppings sediments clone KD1-79 2.43.2.1.2.1.7736 OTU 1 seq prokMSA_id:74696 AF005994.1 Pseudomonas sp. str. 679-2 2.43.2.1.2.1.7747 OTU 1 seq prokMSA_id:7236 S55000.1 Burkholderia mallei 2.43.2.1.2.1.7771 OTU 20 seqs prokMSA_id:7211 Y17009.1 Burkholderia caribensis str. MWAP64 prokMSA_id:7212 AF184927.1 24-D-degrading isolate str. TFD2 prokMSA_id:7220 Y17011.1 Burkholderia caribensis str. MWAP84 prokMSA_id:7227 U96935.1 Burkholderia glathei str. LMG14190T prokMSA_id:7228 Y17052.1 Burkholderia glathei str. ATCC 29195T; LMG 14190T prokMSA_id:7229 AB021374.1 Burkholderia glathei str. ATCC 29195T prokMSA_id:7230 AB025790.1 Burkholderia sp. NF100 prokMSA_id:16881 AJ300694.1 Burkholderia sp. str. GR34 prokMSA_id:38074 AJ292646.1 PCB-polluted soil clone WD2109 prokMSA_id:40645 AJ302312.1 Burkholderia phymatum str. STM815 prokMSA_id:41082 AF247496.1 Burkholderia sp. S4.9 prokMSA_id:50723 AJ300698.1 Burkholderia sp. str. NF23 prokMSA_id:99277 AY586519.1 Burkholderia caribensis str. LUC264 prokMSA_id:100149 AY439195.1 soil clone MeBr 1 prokMSA_id:100613 AY439198.1 soil clone MeBr 20 prokMSA_id:108839 AY773185.1 Burkholderia sp. str. BR3405 prokMSA_id:108840 AY773186.1 Burkholderia sp. Br3407 str. BR3407 prokMSA_id:108844 AY773190.1 Burkholderia sp. str. BR3446 prokMSA_id:112116 AY904785.1 Burkholderia sp. str. SEMIA 6412 prokMSA_id:112298 AY904767.1 Burkholderia sp. str. SEMIA 6166 2.43.2.1.2.1.7782 OTU 11 seqs prokMSA_id:7213 AF074711.1 Burkholderia sp. EN-B3 prokMSA_id:7214 AF074712.1 Burkholderia sp. EN-B9 prokMSA_id:7218 AB015530.1 deep-sea sediment clone BD1-33 prokMSA_id:19103 AF164059.2 diazotroph str. BA126 prokMSA_id:26180 AF227856.1 str. 96444 prokMSA_id:37791 AF364859.1 Burkholderia sp. str. AB119 prokMSA_id:69874 AF164043.2 diazotroph str. AB48 prokMSA_id:71461 AJ318182.1 Waste-gas biofilter clone BIsii8 prokMSA_id:71936 AY040365.1 Burkholderia hospita str. LMG 20598T prokMSA_id:92786 AY238506.1 Burkholderia sp. str. 14 prokMSA_id:111996 AY904768.1 Burkholderia sp. str. SEMIA 6167 2.43.2.1.2.1.7837 OTU 7 seqs prokMSA_id:21561 AF311971.1 Burkholderia cepacia LS2.4 prokMSA_id:27839 AJ300697.1 Burkholderia sp. str. ON1 prokMSA_id:35609 AF219125.1 Burkholderia sp. AB2 prokMSA_id:45950 AF311972.1 Burkholderia cepacia WS11.7 prokMSA_id:56209 AF494540.1 Burkholderia sp. str. BPC2 prokMSA_id:77747 AJ440715.1 Burkholderia pyrrocinia str. R1904 prokMSA_id:78347 AJ440713.1 Burkholderia pyrrocinia str. R11805 2.43.2.1.2.1.7841 OTU 1 seq prokMSA_id:7223 AF061872.1 Burkholderia sp. str. RP007 2.43.2.1.2.1.7848 OTU 1 seq prokMSA_id:34343 Y12367.1 Thiolamprovum pedioforme str. 4470/CML2 2.43.2.1.2.1.7870 OTU 10 seqs prokMSA_id:7237 U91838.1 Burkholderia thailandensis prokMSA_id:7238 AJ131790.1 Burkholderia pseudomallei prokMSA_id:7239 U91839.1 Burkholderia pseudomallei str. 1026b prokMSA_id:17136 AF093054.1 Burkholderia pseudomallei L2 prokMSA_id:24062 AF093048.1 Burkholderia pseudomallei (Ara+ biotype) S94019 (Ara+ prokMSA_id:36691 AF093057.1 Burkholderia pseudomallei V685 prokMSA_id:39013 AF093058.1 Burkholderia pseudomallei V688 prokMSA_id:46605 AF093056.1 Burkholderia pseudomallei V684 prokMSA_id:48735 AF093047.1 Burkholderia pseudomallei H1 prokMSA_id:82150 AY198339.1 Burkholderia pseudomallei 2.43.2.1.2.1.7887 OTU 1 seq prokMSA_id:7186 M68889.2 endosymbiont of mealybug (Pseudococcus longispinus) 2.43.2.1.2.1.7895 OTU 4 seqs prokMSA_id:7215 AB024310.1 Burkholderia kururiensis prokMSA_id:7216 AJ238360.1 Burkholderia brasilensis str. M130 prokMSA_id:99125 AY586518.1 Burkholderia kururiensis str. LUC24 prokMSA_id:107783 AY586516.1 Burkholderia kururiensis str. IRP416 2.43.2.1.2.1.7897 OTU 1 seq prokMSA_id:7187 M68888.2 endosymbiont of mealybug (Dysmicoccus neobrivipes) 2.43.2.1.2.1.7898 OTU 1 seq prokMSA_id:7188 M68890.2 endosymbiont of mealybug (Pseudococcus maritimus) 2.43.2.1.2.1.7899 OTU 1 seq prokMSA_id:7189 X67037.1 Burkholderia andropogonis 2.43.2.1.2.1.7914 OTU 1 seq prokMSA_id:7190 AB021422.1 Burkholderia andropogonis str. ATCC 19311T 2.43.2.1.2.1.7918 OTU 1 seq prokMSA_id:7280 U16140.1 Burkholderia species 2.43.2.1.2.1.7934 OTU 31 seqs prokMSA_id:7183 Y09879.1 Pandoraea norimbergensis prokMSA_id:7184 AJ011509.1 Burkholderia sp. str. IpA-51 prokMSA_id:7185 X92188.1 Burkholderia sp. str. JB1 prokMSA_id:17884 AF247692.1 Pandoraea sp. str. G5056 prokMSA_id:22226 AF247694.1 Pandoraea sp. str. G7835 prokMSA_id:25682 AF247698.1 Pandoraea sp. str. H652 prokMSA_id:35338 AF139175.1 Pandoraea pulmonicola str. LMG 18106 prokMSA_id:35988 AF247695.1 Pandoraea sp. str. G8107 prokMSA_id:46842 AF247696.1 Pandoraea sp. str. G9278 prokMSA_id:48497 AJ313026.1 Burkholderia sp. MN 182.2 prokMSA_id:49796 AF247691.1 Pandoraea sp. str. G3308 prokMSA_id:52177 AF139173.1 Pandoraea apista str. LMG 16407 prokMSA_id:60992 AF532595.1 Pandoraea sp. str. LY prokMSA_id:63605 AY043377.1 Pandoraea sp. str. AU1775 prokMSA_id:70261 AF247697.1 Pandoraea sp. str. G9805 prokMSA_id:70742 AF247699.1 Pandoraea sp. str. G3307 prokMSA_id:70855 AF247693.1 Pandoraea sp. str. G5084 prokMSA_id:72667 AF139171.1 Pandoraea norimbergensis str. LMG 13019 prokMSA_id:72789 AF139176.1 Pandoraea sputorum str. LMG 18819 prokMSA_id:72865 AF139172.1 Pandoraea apista str. LMG 18089 prokMSA_id:73443 AF139174.1 Pandoraea pnomenusa str. LMG 18087 prokMSA_id:88090 AY268168.1 Pandoraea pnomenusa str. 2001008157 prokMSA_id:88183 AY268174.1 Pandoraea norimbergensis str. CCUG 39188 prokMSA_id:89030 AY268173.1 Pandoraea pulmonicola str. CCUG 38759 prokMSA_id:89390 AY268172.1 Pandoraea apista str. CCUG 38412 prokMSA_id:89534 AY268170.1 Pandoraea pnomenusa str. CCUG 38742 prokMSA_id:90020 AY268171.1 Pandoraea sp. str. CCUG 39680 prokMSA_id:90734 AY268169.1 Pandoraea sp. str. 2001032141 prokMSA_id:103864 AY686701.1 Pandoraea pnomenusa str. MCB032 prokMSA_id:105307 AB118229.1 Pandoraea sp. PAMU-2.78 prokMSA_id:105522 AJ536672.1 bulk rice field soil isolate str. RBS3-61 2.43.2.1.2.1.7935 OTU 1 seq prokMSA_id:63946 AF476098.1 Vryburgia brevicruris symbiont 2.43.2.1.2.1.7952 OTU 3 seqs prokMSA_id:55005 AF322017.1 Planococcus citri endosymbiont prokMSA_id:63949 AF476092.1 Planococcus ficus symbiont prokMSA_id:63951 AF476091.1 Planococcus citri symbiont 2.43.2.1.2.1.7957 OTU 1 seq prokMSA_id:63955 AF476089.1 Maconellicoccus hirsutus symbiont 2.43.2.1.2.1.7959 OTU 1 seq prokMSA_id:63957 AF476088.1 Maconellicoccus australiensis symbiont 2.43.2.1.2.1.7960 OTU 1 seq prokMSA_id:63958 AF476086.1 Ferrisia sp. symbiont 2.43.2.1.2.1.7963 OTU 1 seq prokMSA_id:63959 AF476084.1 Erium globosum symbiont 2.43.2.1.2.1.7969 OTU 6 seqs prokMSA_id:7202 U37342.1 Burkholderia sp. prokMSA_id:7203 AF052387.1 Burkholderia sp. 'SAP II' str. SAP II prokMSA_id:34989 AY038617.1 lacustrine subsurface sediment clone GL182.9 prokMSA_id:58605 AY134849.1 Burkholderia sp. str. ICD prokMSA_id:68457 AF459796.1 Tetraponera binghami symbiont prokMSA_id:78791 AY177370.2 Burkholderia sp. str. 56 2.43.2.1.2.1.7983 OTU 1 seq prokMSA_id:63960 AF476085.1 Ferrisia malvastra symbiont 2.43.2.1.2.1.7985 OTU 1 seq prokMSA_id:63963 AF476077.1 Australicoccus grevilleae symbiont 2.43.2.1.2.1.8011 OTU 22 seqs prokMSA_id:7192 U37344.1 Burkholderia sp. prokMSA_id:7193 AF184931.1 24-D-degrading isolate str. TFD6 prokMSA_id:7198 AJ011508.1 Burkholderia sp. str. DhA-54 prokMSA_id:7209 U96941.1 Burkholderia graminis str. AUS35 prokMSA_id:7210 U91570.1 Burkholderia caryophylli str. MCII-8 prokMSA_id:7221 U96936.1 Burkholderia phenazinium str. LMG2247T prokMSA_id:17921 AJ292642.1 PCB-polluted soil clone WD266 prokMSA_id:19267 AY049943.1 acidic forest soil isolate str. A30-1 prokMSA_id:19558 AJ292644.1 PCB-polluted soil clone WD285 prokMSA_id:26306 AJ292637.1 PCB-polluted soil clone WD202 prokMSA_id:27725 AJ300696.1 Burkholderia sp. str. OY715 prokMSA_id:37450 AJ300689.1 Burkholderia sp. str. 13SM prokMSA_id:40058 AF210314.1 Burkholderia sp. str. HY1 prokMSA_id:42224 AF215704.1 Burkholderia caledonica str. LMG 19076 prokMSA_id:42336 AJ300692.1 Burkholderia sp. str. RW36 prokMSA_id:51147 AY049940.1 acidic forest soil isolate str. A40-2 prokMSA_id:66264 AF508806.1 Burkholderia sp. str. TNFYE-5 prokMSA_id:73256 AF452132.1 Burkholderia sp. str. LMG 21262 prokMSA_id:75150 AY154376.1 Burkholderia phenazinium Hg 16 prokMSA_id:75878 AY154373.1 Burkholderia phenazinium Hg 10 prokMSA_id:76456 AY154375.1 Burkholderia phenazinium Hg 14 prokMSA_id:76898 AY154372.1 Burkholderia phenazinium Hg 8 2.43.2.1.2.1.8030 OTU 1 seq prokMSA_id:17255 AF229890.2 Ralstonia sp. str. P-4CB2 2.43.2.1.2.1.8044 OTU 5 seqs prokMSA_id:27685 AB041730.1 Burkholderia sp. CAB-02 prokMSA_id:32496 AF335494.1 Burkholderia cepacia prokMSA_id:52847 AJ420880.1 Burkholderia anthina str. R-4183 prokMSA_id:80730 AJ544072.1 Burkholderia anthina str. BHS1 prokMSA_id:81718 AY207313.1 Burkholderia cepacia str. B9 2.43.2.1.2.1.8059 OTU 1 seq prokMSA_id:7219 Y17010.1 Burkholderia caribensis str. MWAP71 2.43.2.1.2.1.8061 OTU 1 seq prokMSA_id:42363 AB030021.1 Antonina crawii (Insecta Homoptera Pseudooccidae) symbiont Antonina 2.43.2.1.2.1.8068 OTU 2 seqs prokMSA_id:7224 X67039.1 Burkholderia caryophylli prokMSA_id:7226 AB021423.1 Burkholderia caryophylli str. ATCC 25418T 2.43.2.1.2.1.8095 OTU 2 seqs prokMSA_id:30439 AJ251634.1 Scutellospora persica strain E28 symbiont prokMSA_id:50390 AJ251635.1 Scutellospora persica strain E09 symbiont 2.43.2.1.2.1.8097 OTU 117 seqs prokMSA_id:7194 AF184929.1 24-D-degrading isolate str. TFD3 prokMSA_id:7199 AF068011.1 Burkholderia sp. VUN10013 str. VUN 10013 prokMSA_id:7200 U86373.1 Burkholderia xenovorans str. LB400 prokMSA_id:7242 L28675.1 Burkholderia cepacia (vietnamiensis) prokMSA_id:7247 U37340.1 Burkholderia sp. prokMSA_id:7248 Y18703.1 Burkholderia multivorans str. LMG 13010T prokMSA_id:7249 AF043302.1 Burkholderia vietnamiensis prokMSA_id:7250 AF097530.1 Burkholderia cepacia str. ATCC25416 prokMSA_id:7251 AF097531.1 Burkholderia multivorans str. LMG 14293 prokMSA_id:7252 AF097532.1 Burkholderia cepacia str. LMG 12614t2 prokMSA_id:7253 AF097533.1 Burkholderia cepacia str. LMG 14294 prokMSA_id:7254 AF097534.1 Burkholderia vietnamiensis prokMSA_id:7255 AB015606.1 Burkholderia cepacia str. KP24 prokMSA_id:7258 AB008002.1 Burkholderia sp. str. MBIC3837 E1 prokMSA_id:7261 U96928.1 Burkholderia vietnamiensis str. TVV75 T prokMSA_id:7264 U96931.1 Burkholderia glumae str. LMG2196T prokMSA_id:7265 U96934.1 Burkholderia gladioli str. LMG11626T prokMSA_id:7266 U96929.1 Burkholderia vietnamiensis prokMSA_id:7267 X67038.1 Burkholderia gladioli subsp pathovar gladioli prokMSA_id:7269 AB024491.1 Burkholderia subsp. gladioli str. NIAS 1065 prokMSA_id:7270 AB023646.1 Burkholderia gladioli prokMSA_id:7271 AB023647.1 Burkholderia gladioli prokMSA_id:7272 U96933.1 Burkholderia plantarii str. LMG9035T prokMSA_id:7273 U96930.1 Burkholderia pyrrocinia str. LMG14191T prokMSA_id:7275 U96937.1 Burkholderia sp. str. m35b prokMSA_id:7276 U96938.1 Burkholderia sp. str. C3B1M prokMSA_id:7279 U96927.1 Burkholderia cepacia str. ATCC 25416T prokMSA_id:17335 AB021389.1 Burkholderia gladioli str. ATCC 33664T prokMSA_id:17796 AF312214.1 Burkholderia sp. str. BM16 prokMSA_id:19015 AJ300688.1 Burkholderia sp. str. S512 prokMSA_id:19447 AY028444.1 Burkholderia ambifaria prokMSA_id:20853 AJ300693.1 Burkholderia sp. str. WR19X prokMSA_id:27908 AF226727.1 Burkholderia sp. str. casida prokMSA_id:30241 AF164045.2 Burkholderia tropica str. AB98 prokMSA_id:31797 AF439777.1 Burkholderia sp. str. JR7B3 prokMSA_id:32065 AJ300685.1 Burkholderia sp. str. SH1a prokMSA_id:39502 AF439776.1 Burkholderia sp. str. JRB1 prokMSA_id:40802 AB051408.1 Burkholderia cepacia str. ST-200 prokMSA_id:46233 AF219126.1 Burkholderia sp. AB101 prokMSA_id:48688 AF175314.1 Burkholderia cepacia str. LMG 18941 prokMSA_id:49014 AJ300684.1 Burkholderia sp. NCPPB3025 str. NCPPB 3025 Allium cepa L.(onion) NCPPB3025 prokMSA_id:49852 AJ420332.1 Burkholderia tropica str. Ppe8 prokMSA_id:50006 AF247493.1 Burkholderia sp. C4.7 prokMSA_id:51110 AJ292647.1 PCB-polluted soil clone WD2114 prokMSA_id:53380 AF247494.1 Burkholderia sp. S2.1 prokMSA_id:53682 AB013111.1 Burkholderia gladioli subsp. farinofermantans str. co14 prokMSA_id:54199 AJ300695.1 Burkholderia sp. str. RR8 prokMSA_id:59707 AB091761.1 Burkholderia cepacia prokMSA_id:62903 E10021.1 Burkholderia cepacia prokMSA_id:71097 AF148554.1 Burkholderia stabilis str. LMG 14294 prokMSA_id:72468 AF148555.1 Burkholderia multivorans str. LMG 13010 prokMSA_id:74106 AF148556.1 Burkholderia cenocepacia prokMSA_id:74760 AJ292638.1 PCB-polluted soil clone WD206 prokMSA_id:77289 AY128105.1 Burkholderia tropica str. MOc-725 prokMSA_id:77461 AY128104.1 Burkholderia tropica str. MTo-672 prokMSA_id:77530 AY128103.1 Burkholderia tropica str. MTo-293 prokMSA_id:77828 AB088048.1 Burkholderia sp. str. VE22 prokMSA_id:78142 AJ440714.1 Burkholderia pyrrocinia str. R13058 prokMSA_id:80462 AY221956.1 Burkholderia unamae str. MTl-641 prokMSA_id:82944 AJ555477.1 Burkholderia sp. str. MN 101.b prokMSA_id:84996 AB092606.1 Burkholderia multivorans str. ATCC 17616 prokMSA_id:89744 AY321587.1 Burkholderia pyrrocinia str. HI2715 prokMSA_id:90244 AY297695.1 Burkholderia gladioli prokMSA_id:91019 AY268144.1 Burkholderia cepacia str. 1996031073 prokMSA_id:91039 AY268167.1 Burkholderia gladioli str. 1993027208 prokMSA_id:91062 AY305811.1 Burkholderia pseudomallei str. 2002721619 prokMSA_id:91069 AY305805.1 Burkholderia pseudomallei str. 2002721626 prokMSA_id:91105 AY268149.1 Burkholderia cepacia str. 1995019362 prokMSA_id:91267 AY268150.1 Burkholderia cepacia str. 1997030236 prokMSA_id:91294 AY305812.1 Burkholderia pseudomallei str. 2002721618 prokMSA_id:91313 AY268152.1 Burkholderia cepacia str. 2001008925 prokMSA_id:91324 AY268147.1 Burkholderia cepacia str. 1996031071 prokMSA_id:91383 AY305773.1 Burkholderia pseudomallei str. 2001029240 prokMSA_id:91413 AY268140.1 Burkholderia cepacia str. 1997019658 prokMSA_id:91511 AY268146.1 Burkholderia cepacia str. 1995030549 prokMSA_id:91555 AY305742.1 Burkholderia mallei str. 2002734303 prokMSA_id:91595 AY268163.1 Burkholderia gladioli str. 2002721590 prokMSA_id:91633 AY268148.1 Burkholderia cepacia str. 1995035407 prokMSA_id:91654 AY268141.1 Burkholderia cepacia str. 1996034502 prokMSA_id:91737 AY305763.1 Burkholderia pseudomallei str. 2000032027 prokMSA_id:91750 AY268145.1 Burkholderia cepacia str. 1996031072 prokMSA_id:91794 AY268143.1 Burkholderia cepacia str. 1997024024 prokMSA_id:91849 AY268151.1 Burkholderia cepacia str. 2002721599 prokMSA_id:91916 AY268165.1 Burkholderia gladioli str. 1995009253 prokMSA_id:91924 AY268166.1 Burkholderia gladioli str. 1996012911 prokMSA_id:91991 AY268164.1 Burkholderia gladioli str. 2002721589 prokMSA_id:92151 AY353696.1 Burkholderia sp. 45250588-5 prokMSA_id:98973 AY586517.1 Burkholderia gladioli str. LUC15 prokMSA_id:99660 AJ616911.2 Burkholderia pseudomallei str. C7532 prokMSA_id:99823 AJ616912.2 Burkholderia pseudomallei str. C6756 prokMSA_id:99847 AY486372.1 Burkholderia multivorans str. AU0127 prokMSA_id:100118 AY500138.1 Burkholderia gladioli str. CH-2 prokMSA_id:100540 AY741332.1 Burkholderia cepacia str. ATCC 17460 prokMSA_id:100697 AY741333.1 Burkholderia cepacia str. ATCC 17616 prokMSA_id:101330 AY741337.1 Burkholderia cepacia str. ATCC 21808 prokMSA_id:101500 AY741338.1 Burkholderia cepacia str. ATCC 21809 prokMSA_id:101891 AY277699.1 Psychotria verschuerenii var. reducta symbiont prokMSA_id:102244 AY741355.1 Burkholderia cepacia str. ATCC 53796 prokMSA_id:102281 AB162427.1 Burkholderia cepacia str. nao7 prokMSA_id:102928 AY561845.1 Burkholderia tropica str. Aa1 prokMSA_id:105752 AY741343.1 Burkholderia cepacia str. ATCC 27515 prokMSA_id:106104 AJ505302.1 Burkholderia sp. str. STM1441 prokMSA_id:106205 AY741346.1 Burkholderia cepacia str. ATCC 35254 prokMSA_id:106241 AY395430.1 pasture soil clone EB1111 prokMSA_id:106399 AY395431.1 pasture soil clone EB1112 prokMSA_id:106532 AY741348.1 Burkholderia cepacia str. ATCC 39356 prokMSA_id:106626 AY741361.1 Burkholderia cepacia str. ATCC 29352 prokMSA_id:106782 AY395349.1 pasture soil clone EB1030 prokMSA_id:106783 AY741362.1 Burkholderia cepacia str. ATCC 53130 prokMSA_id:106837 AY321306.1 Burkholderia tropica str. LM2-37603 prokMSA_id:106980 AY321307.1 Burkholderia tropica str. LM1-376.8 prokMSA_id:107108 AB114607.1 Burkholderia cepacia str. CNR22 prokMSA_id:107629 AY586515.1 Burkholderia gladioli str. LUC57 prokMSA_id:107707 AY665976.1 Burkholderia gladioli str. RBHSC/CF/230604/F prokMSA_id:110091 AB183679.1 Burkholderia plantarii str. 2396 prokMSA_id:110105 AY616143.1 Burkholderia stabilis str. R prokMSA_id:110590 AB183678.1 Burkholderia plantarii str. 9411 2.43.2.1.2.1.8118 OTU 1 seq prokMSA_id:32920 S55001.1 Burkholderia gladioli 2.43.2.1.2.1.8120 OTU 1 seq prokMSA_id:24899 AF361021.1 Burkholderia sp. str. NAP1 2.43.2.1.2.1.8132 OTU 1 seq prokMSA_id:7260 U67162.1 Thiomonas cuprinus 2.43.2.1.2.1.8154 OTU 7 seqs prokMSA_id:63947 AF476097.1 Vryburgia amaryllidis symbiont prokMSA_id:63950 AF476094.1 Paracoccus nothofagicola symbiont prokMSA_id:63952 AF476096.1 Sarococcus comis symbiont prokMSA_id:63954 AF476090.1 Nipaecoccus exocarpi symbiont prokMSA_id:63956 AF476087.1 Melanococcus albizziae symbiont prokMSA_id:63961 AF476083.1 Dysmicoccus neobrevipes symbiont prokMSA_id:63962 AF476081.1 Cyphonococcus alpinus symbiont 2.43.2.1.2.1.8164 OTU 2 seqs prokMSA_id:63964 AF476079.1 Antonina pretiosa symbiont prokMSA_id:63966 AF476080.1 Anisococcus ephedrae symbiont 2.43.2.1.3 Comamonadaceae 690 seqs 2.43.2.1.3.1 sf_1 690 seqs 2.43.2.1.3.1.7660 OTU 10 seqs prokMSA_id:18248 AF233876.1 Comamonas denitrificans str. 110 prokMSA_id:20196 AB076868.1 anaerobic sludge clone OS1L-11 prokMSA_id:22960 AB076867.1 anaerobic sludge clone OS1L-10 prokMSA_id:23191 AF233877.1 Comamonas denitrificans str. 123 prokMSA_id:35749 AB076869.1 anaerobic sludge clone OS1L-16 prokMSA_id:40166 AF233878.1 Comamonas denitrificans str. 2.99g prokMSA_id:42211 AB076865.1 anaerobic sludge clone OS1L-7 prokMSA_id:58512 AB072708.1 subsurface prokMSA_id:73055 AF233880.1 Comamonas denitrificans str. P17 prokMSA_id:74723 AF233879.1 Comamonas denitrificans str. 5.38g 2.43.2.1.3.1.7686 OTU 1 seq prokMSA_id:29302 AJ421937.2 Germany:Elbe River clone Elb252 2.43.2.1.3.1.7695 OTU 9 seqs prokMSA_id:6914 AB021337.1 strain isolate str. rM2 prokMSA_id:6915 AB021338.1 strain isolate str. rM3 prokMSA_id:6917 AB021342.1 strain isolate str. rM7 prokMSA_id:6918 AB021346.1 strain isolate str. rM11 prokMSA_id:6919 AB021348.1 strain isolate str. rM13 prokMSA_id:6920 AB021353.1 strain isolate str. rA1 prokMSA_id:6921 AB021355.1 strain isolate str. rA3 prokMSA_id:26116 AF390915.1 clone ICBTF8 prokMSA_id:108740 AY566581.1 Comamonas sp. str. PG-08 2.43.2.1.3.1.7704 OTU 1 seq prokMSA_id:72635 AF289169.1 freshwater clone PRD01b009B 2.43.2.1.3.1.7705 OTU 1 seq prokMSA_id:81902 AY218644.1 penguin droppings sediments clone KD4-7 2.43.2.1.3.1.7712 OTU 5 seqs prokMSA_id:6924 AF188304.1 Comamonas sp. str. D22 prokMSA_id:36914 AF408327.1 Comamonas sp. clone KL-11-1-9 prokMSA_id:73664 AJ430344.1 Comamonas aquatica str. LMG 2370 prokMSA_id:89264 AJ550274.1 Comamonas terrigena TK17 prokMSA_id:105641 AY625145.1 perchloroethylene-contaminated ground water clone L-1 2.43.2.1.3.1.7713 OTU 1 seq prokMSA_id:6925 AF078773.1 Comamonas sp. str. 12022 2.43.2.1.3.1.7718 OTU 6 seqs prokMSA_id:64300 AB086632.1 Lampropedia hyalina str. IAM 14970 prokMSA_id:84310 AB092691.1 Lampropedia hyalina str. IAM 14890 prokMSA_id:96749 AB089485.1 Lampropedia hyalina str. IAM 14890 prokMSA_id:99805 AY291120.1 Lampropedia hyalina str. ATCC 11041 prokMSA_id:99960 AY291121.1 Lampropedia hyalina str. ATCC 43383 prokMSA_id:105081 AY291119.1 Lampropedia hyalina str. DSM 15336 2.43.2.1.3.1.7719 OTU 1 seq prokMSA_id:81611 AY218585.1 penguin droppings sediments clone KD2-46 2.43.2.1.3.1.7725 OTU 1 seq prokMSA_id:82574 AF534428.1 Toolik Lake main station at 3 m depth clone TLM04/TLMdgge03 proteobacterium 2.43.2.1.3.1.7735 OTU 1 seq prokMSA_id:78738 AY177768.1 soil clone 2.43.2.1.3.1.7738 OTU 2 seqs prokMSA_id:7164 Z18533.1 "Leptothrix discophora" prokMSA_id:7173 L33975.1 "Leptothrix discophora" 2.43.2.1.3.1.7739 OTU 1 seq prokMSA_id:45606 AF364862.1 nitrogen-fixing banana fruit isolate str. BA128 2.43.2.1.3.1.7741 OTU 2 seqs prokMSA_id:7170 L33974.1 "Leptothrix discophora" prokMSA_id:7171 X97070.1 Leptothrix cholodnii 2.43.2.1.3.1.7742 OTU 2 seqs prokMSA_id:20107 AJ421920.1 Germany:Elbe River clone Elb101 prokMSA_id:29425 AJ421923.2 Germany:Elbe River clone Elb123 2.43.2.1.3.1.7745 OTU 1 seq prokMSA_id:58864 AF426000.1 Anabaena circinalis AWQC118C isolate str. UNSW5 2.43.2.1.3.1.7746 OTU 1 seq prokMSA_id:70503 AJ289999.1 Germany: Lake Fuchskuhle north basin clone FukuN55 FukuN55 2.43.2.1.3.1.7749 OTU 1 seq prokMSA_id:76529 AY168753.1 Hydrogenophaga sp. str. ATCC BAA-306 YED1-18 ATCC 2.43.2.1.3.1.7754 OTU 1 seq prokMSA_id:21007 AJ318129.1 Waste-gas biofilter clone BIfdi44 2.43.2.1.3.1.7756 OTU 1 seq prokMSA_id:6938 D14320.1 Brachymonas denitrificans 2.43.2.1.3.1.7757 OTU 2 seqs prokMSA_id:51698 U70707.1 Cape Hatteras picoplankton clone OM180 prokMSA_id:82776 AJ440995.1 lake microbial mat isolate str. R-8890 2.43.2.1.3.1.7769 OTU 2 seqs prokMSA_id:6932 AB021357.1 strain isolate str. rA6 prokMSA_id:6933 AB021358.1 strain isolate str. rA7 2.43.2.1.3.1.7773 OTU 4 seqs prokMSA_id:20114 AF387302.1 Thiomonas sp. str. Ynys1 prokMSA_id:82126 AJ549219.1 Thiomonas sp. B2 prokMSA_id:82391 AJ549220.1 Thiomonas sp. B3 prokMSA_id:104125 AY455809.1 Thiomonas intermedia str. ATCC 15466 2.43.2.1.3.1.7775 OTU 1 seq prokMSA_id:6999 Y11465.1 D8 2.43.2.1.3.1.7786 OTU 1 seq prokMSA_id:7005 U14585.1 unidentified alpha proteobacterium 2.43.2.1.3.1.7801 OTU 1 seq prokMSA_id:84443 AF534429.1 Toolik Lake main station at 3 m depth clone TLM05/TLMdgge10 proteobacterium 2.43.2.1.3.1.7807 OTU 20 seqs prokMSA_id:7088 AF078755.1 Aquaspirillum psychrophilum str. LMG 5408 prokMSA_id:7090 AB021320.1 strain isolate str. rJ1 prokMSA_id:7091 AB021334.1 strain isolate str. rJ16 prokMSA_id:7092 AB021340.1 strain isolate str. rM5 prokMSA_id:7093 AB021361.1 strain isolate str. rA10 prokMSA_id:7096 AF078757.1 Aquaspirillum metamorphum str. LMG 4339 prokMSA_id:7097 Z93960.1 activated sludge clone T33 prokMSA_id:7098 Y18618.1 Aquaspirillum metamorphum str. DSM 1837 prokMSA_id:16841 AF407204.1 MCB-contaminated groundwater-treating reactor clone GIF15 prokMSA_id:34473 AF407194.1 MCB-contaminated groundwater-treating reactor clone GIF2 prokMSA_id:35415 AB076845.1 isolate str. NOS3 prokMSA_id:35695 AF422643.1 TCE-sediment clone d034 prokMSA_id:44893 AB076846.1 isolate str. NOS8 prokMSA_id:45919 AF407197.1 MCB-contaminated groundwater-treating reactor clone GIF5 prokMSA_id:47038 AY050583.1 MCB-contaminated groundwater-treating reactor clone GOUTA11 prokMSA_id:52690 AF422662.1 TCE-sediment clone d078 prokMSA_id:58579 AJ505857.1 river water isolate str. PIV-8-1 = DSM 14767 PIV-8-1 prokMSA_id:70987 AJ505858.1 river water isolate str. PIV-8-2 prokMSA_id:79199 AY188326.1 penguin droppings sediment clone KD8-10 prokMSA_id:81909 AY218567.1 penguin droppings sediments clone KD1-96 2.43.2.1.3.1.7812 OTU 1 seq prokMSA_id:33614 AF358003.1 peat soil microcosm clone LO13.11 2.43.2.1.3.1.7814 OTU 1 seq prokMSA_id:6953 AF019037.1 Hydrogenophaga intermedia str. S1 2.43.2.1.3.1.7820 OTU 1 seq prokMSA_id:45838 AF236009.1 isolate str. A1004 2.43.2.1.3.1.7821 OTU 1 seq prokMSA_id:23857 AY013643.1 sample taken downstream landfill clone BVB72 landfill 2.43.2.1.3.1.7822 OTU 16 seqs prokMSA_id:7006 AJ224987.1 closest relative Rhodoferax fermentans clone GKS16 prokMSA_id:18901 AF407416.1 MCB-contaminated groundwater-treating reactor clone RB13C13 prokMSA_id:51248 AF407400.1 MCB-contaminated groundwater-treating reactor clone RA13C10 prokMSA_id:76891 AY166684.1 Polaromonas naphthalenivorans str. CJ2 prokMSA_id:81748 AY218637.1 penguin droppings sediments clone KD4-57 prokMSA_id:82777 AY250090.1 napthalene-contaminated sediment clone 3 prokMSA_id:82904 AY250095.1 napthalene-contaminated sediment clone 34 prokMSA_id:83234 AY250108.1 napthalene-contaminated sediment clone 124 prokMSA_id:83874 AY250106.1 napthalene-contaminated sediment clone 95 prokMSA_id:84106 AY250097.1 napthalene-contaminated sediment clone 44 prokMSA_id:84163 AY250101.1 napthalene-contaminated sediment clone 61 prokMSA_id:84478 AY250096.1 napthalene-contaminated sediment clone 38 prokMSA_id:85176 AY250100.1 napthalene-contaminated sediment clone 59 prokMSA_id:85808 AY250102.1 napthalene-contaminated sediment clone 72 prokMSA_id:86525 AY250103.1 napthalene-contaminated sediment clone 75 prokMSA_id:86562 AY250092.1 napthalene-contaminated sediment clone 27 2.43.2.1.3.1.7829 OTU 12 seqs prokMSA_id:7033 AF078758.1 Xylophilus ampelinus str. ATCC 33914 prokMSA_id:22998 AJ420330.1 Xylophilus ampelinus str. DSM 7250 prokMSA_id:51397 AF236004.1 isolate str. A0637 prokMSA_id:53922 AF361203.1 mesoeutrophic reservoir clone 16 prokMSA_id:59726 AF538929.1 Variovorax sp. str. WDL1 prokMSA_id:71257 AF289155.1 freshwater clone PRD01a007B prokMSA_id:72353 AF289161.1 freshwater clone PRD01b001B prokMSA_id:72406 AF289162.1 freshwater clone PRD01b002B prokMSA_id:74457 AF289164.1 freshwater clone PRD01b004B prokMSA_id:78615 AY189630.1 Homo sapiens outer ear canal clone EarCan103 prokMSA_id:81851 AY169432.1 Variovorax paradoxus prokMSA_id:99062 AY532540.1 uranium-contaminated aquifer clone 1013-1-CG16 2.43.2.1.3.1.7834 OTU 5 seqs prokMSA_id:6928 AF078772.1 Comamonas terrigena str. IMI 359870 prokMSA_id:6936 AB021418.1 Comamonas terrigena str. IAM 12052T prokMSA_id:17652 AJ420326.1 Comamonas terrigena str. DSM 7099 prokMSA_id:66690 AJ430343.1 Comamonas terrigena str. LMG 1249 prokMSA_id:66691 AJ430342.1 Comamonas terrigena str. LMG 1253 2.43.2.1.3.1.7847 OTU 1 seq prokMSA_id:81130 AY218568.1 penguin droppings sediments clone KD2-104 2.43.2.1.3.1.7854 OTU 3 seqs prokMSA_id:6950 AB021327.1 strain isolate str. rJ9 prokMSA_id:6951 AB021349.1 strain isolate str. rM14 prokMSA_id:7024 AB021354.1 strain isolate str. rA2 2.43.2.1.3.1.7855 OTU 1 seq prokMSA_id:7174 U62834.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB11 2.43.2.1.3.1.7856 OTU 15 seqs prokMSA_id:35360 AJ420329.1 Variovorax paradoxus str. DSM 66 prokMSA_id:50112 AF388028.1 Variovorax sp. str. 34 prokMSA_id:62971 AF526938.1 Mars Odyssey Orbiter and encapsulation facility clone 81-4 sp. prokMSA_id:62974 AF526935.1 Mars Odyssey Orbiter and encapsulation facility clone 84-23 sp. prokMSA_id:62976 AF526934.1 Mars Odyssey Orbiter and encapsulation facility clone 84-3 sp. prokMSA_id:78833 AY177770.1 soil clone prokMSA_id:82437 AY169431.1 Variovorax paradoxus prokMSA_id:100856 AY706426.1 TCE-contaminated groundwater clone GP1f prokMSA_id:102379 AY599725.1 fungal ascocarp clone Cl-52-TB2-II prokMSA_id:105130 AY706431.1 TCE-contaminated groundwater clone GP3 prokMSA_id:105450 AY706433.1 TCE-contaminated groundwater clone GP1a prokMSA_id:105756 AY706435.1 TCE-contaminated groundwater clone GP1c prokMSA_id:105904 AY706436.1 TCE-contaminated groundwater clone GP1d prokMSA_id:107237 AY599734.1 fungal ascocarp isolate str. TB2-9-II prokMSA_id:107380 AY599735.1 fungal ascocarp clone Cl-13-TB4-II 2.43.2.1.3.1.7860 OTU 1 seq prokMSA_id:7175 AB008801.1 Caldimonas manganoxidans str. JCM 10698 2.43.2.1.3.1.7863 OTU 3 seqs prokMSA_id:7101 AF078754.1 Aquaspirillum sinuosum str. LMG 4393 prokMSA_id:66300 AB074527.1 Aquaspirillum anulus str. IAM 14948 prokMSA_id:66303 AB074522.1 Aquaspirillum giesbergeri str. IAM 14949 2.43.2.1.3.1.7871 OTU 1 seq prokMSA_id:26649 AJ421941.2 Germany:Elbe River clone Elb271 2.43.2.1.3.1.7872 OTU 5 seqs prokMSA_id:7120 U45674.1 activated sludge clone AI301 prokMSA_id:7172 U45675.1 activated sludge clone AI303 prokMSA_id:22856 AJ422152.2 Germany:Spittelwasser River clone Spb03 prokMSA_id:65622 AF507778.1 pinyon-juniper forest soil clone S1200 prokMSA_id:98927 AY429720.1 TCE and cis-DCE contaminated groundwater isolate str. HTCC304 2.43.2.1.3.1.7876 OTU 1 seq prokMSA_id:31150 AF143842.1 hydrocarbon-degrading consortium clone AF2.2 2.43.2.1.3.1.7882 OTU 1 seq prokMSA_id:56155 AF526937.1 Mars Odyssey Orbiter and encapsulation facility clone 83-5 sp. 2.43.2.1.3.1.7884 OTU 1 seq prokMSA_id:40205 AJ421915.2 Germany:Elbe River clone Elb37 2.43.2.1.3.1.7888 OTU 163 seqs prokMSA_id:6941 AF078771.1 Hydrogenophaga flava str. CCUG 1658 prokMSA_id:6942 AB021420.1 Hydrogenophaga flava str. DSM 619T prokMSA_id:6943 AF078770.1 Hydrogenophaga pseudoflava str. ATCC 33668 prokMSA_id:6945 AJ009497.1 anaerobic TCB-transforming consortium clone SJA-155 prokMSA_id:6949 AF019073.1 Hydrogenophaga palleronii str. DSM 63 prokMSA_id:6954 X95836.1 T25 prokMSA_id:6955 AF110006.1 activated sludge micromanipulator isolate str. mz1L Mz1L prokMSA_id:6956 AJ001325.1 organism activated sludge clone prokMSA_id:6957 Z93971.1 activated sludge clone T25 prokMSA_id:6958 Z93972.1 activated sludge clone T19 prokMSA_id:6962 AF097797.1 sludge clone 19523 prokMSA_id:6965 X95838.1 isolate T41 prokMSA_id:6967 Z93968.1 activated sludge clone T71 prokMSA_id:6968 Z93969.1 activated sludge clone T83 prokMSA_id:6970 Z93973.1 activated sludge clone T41 prokMSA_id:6971 Z93974.1 activated sludge clone T70 prokMSA_id:6972 Z93977.1 activated sludge clone T47 prokMSA_id:6979 D16212.1 Rhodoferax fermentans prokMSA_id:6980 D16211.1 Rhodoferax fermentans prokMSA_id:7037 AF144383.3 Ramlibacter tataouinensis str. TTB310 prokMSA_id:7046 AF035049.1 isolate str. B3 prokMSA_id:7056 AF078766.1 Acidovorax temperans str. CCUG 11779 prokMSA_id:7057 U51101.1 freshwater mud isolate BrG1 prokMSA_id:7058 U51104.1 freshwater mud isolate BrG4 prokMSA_id:19472 AB076881.1 anaerobic sludge clone TSL-2-3 prokMSA_id:20007 AB076860.1 anaerobic sludge clone OS1L-1 prokMSA_id:21895 AY027497.1 Arsenite-oxidizing NT-14 prokMSA_id:22529 AB076843.1 Acidovorax sp. str. KSP2 prokMSA_id:24115 AB076871.1 anaerobic sludge clone OS1L-19 prokMSA_id:24701 AB076879.1 anaerobic sludge clone TSL-1-7 prokMSA_id:25859 AB076870.1 anaerobic sludge clone OS1L-18 prokMSA_id:27570 AB076848.1 isolate str. OS-19 prokMSA_id:28287 AB076872.1 anaerobic sludge clone OS1L-20 prokMSA_id:30654 AJ420328.1 Hydrogenophaga flava str. DSM 619 prokMSA_id:31108 AF234687.1 sludge clone H21 prokMSA_id:31610 AF351224.1 obtained coal tar waste-contaminated groundwater clone 36-111 prokMSA_id:32764 AB076880.1 anaerobic sludge clone TSL-2-2 prokMSA_id:34909 AJ422168.1 Germany:Spittelwasser River clone Spb249 prokMSA_id:35165 AJ290026.1 Austria: Lake Gossenkoellesee clone GKS2-122 GKS2-122 prokMSA_id:39244 AJ418042.1 Alicycliphilus denitrificans str. K601 prokMSA_id:39467 AB076847.1 isolate str. OS-9 prokMSA_id:40028 AY027499.1 Arsenite-oxidizing NT-6 prokMSA_id:40752 AF439400.1 Ramlibacter henchirensis str. TMB834 prokMSA_id:41470 AY050494.1 Comamonas testosteroni str. SB2 prokMSA_id:41585 AB076876.1 anaerobic sludge clone TSL-1-1 prokMSA_id:42753 AY027498.1 Arsenite-oxidizing NT-5 prokMSA_id:45318 AB076864.1 anaerobic sludge clone OS1L-6 prokMSA_id:47512 AJ420327.1 Hydrogenophaga pseudoflava str. DSM 1034 prokMSA_id:50786 AB030614.1 groundwater clone 1016 prokMSA_id:51135 AB076842.1 Acidovorax sp. str. KSP1 prokMSA_id:55345 AY093698.1 Acidovorax sp. str. 'smarlab 133815' prokMSA_id:55628 AB087519.1 activated sludge lab-scale anaerobic aerobic sequencing batch reactor (Run6) fed with glutamate clone R6-01 prokMSA_id:56031 AY145615.1 10e-8 dilution brackish samples Weser estuary clone DC11-51-0 proteobacterium prokMSA_id:58604 AY134850.1 Comamonas sp. str. SFCD1 prokMSA_id:59344 AF502223.1 EBPR sludge lab scale clone HP1B35 prokMSA_id:61807 AF529357.1 PCE-contaminated site clone CLs95 prokMSA_id:61820 AF529344.1 PCE-contaminated site clone CLi96 prokMSA_id:61826 AF529338.1 PCE-contaminated site clone CLi60 prokMSA_id:61833 AF529329.1 PCE-contaminated site clone CLi28 prokMSA_id:62392 AF529122.1 trichloroethene-contaminated site clone FTLM27 proteobacterium prokMSA_id:62968 AF527581.1 EBPR sludge lab scale clone LPB10 prokMSA_id:65472 AY102310.1 heavy metal-contaminated soil clone a13103 prokMSA_id:66109 AB074944.1 clone:KB17 clone KB17 prokMSA_id:66230 AF508114.1 Acidovorax avenae C1 prokMSA_id:66684 AJ430348.1 Comamonas kerstersii str. LMG 5323 prokMSA_id:66952 AJ457191.1 Acidovorax aerodenitrificans str. C1 prokMSA_id:68619 AY081982.1 atrazine-catabolizing microbial presence methanol clone KRA30+15 prokMSA_id:69400 AY145570.1 dilution (10e-7) freshwater section Weser estuary isolate str. BP-1b BP-1b prokMSA_id:70139 AJ505855.1 activated sewage sludge isolate str. PIV-3D = DSM 14692 PIV-3D prokMSA_id:71078 Y12375.1 contamination out Chromatium okenii 6010/1111 clone prokMSA_id:72267 AF289168.1 freshwater clone PRD01b008B prokMSA_id:72607 AF289156.1 freshwater clone PRD01a008B prokMSA_id:73303 AY050594.1 MCB-contaminated groundwater-treating reactor clone GOUTB7 prokMSA_id:73849 AY145569.1 dilution (10e-7) freshwater section Weser estuary isolate str. BP-1 BP-1 prokMSA_id:73890 AF442523.1 Bromate-reducing isolate str. B7 prokMSA_id:76513 AJ532685.1 uranium mill tailings clone Gitt-KF-42 prokMSA_id:76907 AY154496.1 earthworm intestine clone wi89 prokMSA_id:81589 AY214196.1 benzene-contaminated groundwater clone ZZ14C11 prokMSA_id:82958 AJ543435.1 nephridia Lumbricus terrestris clone 11.2-15 sp. prokMSA_id:83818 AJ543436.1 nephridia Lumbricus terrestris clone 4.7-1 sp. prokMSA_id:84159 AJ543438.1 nephridia Aporrectodea tuberculata clone 4.3-1 sp. prokMSA_id:86274 AJ543437.1 nephridia Aporrectodea tuberculata clone 4.2-9 sp. prokMSA_id:88128 AF523050.1 natural mineral water clone D-20 prokMSA_id:88170 AY328737.1 drinking water system simulator clone DSSD38 prokMSA_id:88200 AF523048.1 natural mineral water clone D-17 prokMSA_id:88425 AF523000.1 natural mineral water clone B-3 prokMSA_id:88667 AY328793.1 drinking water system simulator clone DSSD96 prokMSA_id:88790 AY328721.1 drinking water system simulator clone DSSD22 prokMSA_id:88831 AF523023.1 natural mineral water clone B-5 prokMSA_id:88878 AF523021.1 natural mineral water clone B-20 prokMSA_id:88897 AY328716.1 drinking water system simulator clone DSSD17 prokMSA_id:89022 AY328727.1 drinking water system simulator clone DSSD28 prokMSA_id:89066 AY328736.1 drinking water system simulator clone DSSD37 prokMSA_id:89279 AY328771.1 drinking water system simulator clone DSSD73 prokMSA_id:89333 AJ565430.1 Hylemonella sp. WQH1 prokMSA_id:89424 AY328723.1 drinking water system simulator clone DSSD24 prokMSA_id:89461 AY328782.1 drinking water system simulator clone DSSD85 prokMSA_id:89504 AF523009.1 natural mineral water clone H-12 prokMSA_id:89666 AY328734.1 drinking water system simulator clone DSSD35 prokMSA_id:89678 AY328786.1 drinking water system simulator clone DSSD89 prokMSA_id:89752 AY328790.1 drinking water system simulator clone DSSD93 prokMSA_id:89840 AY328791.1 drinking water system simulator clone DSSD94 prokMSA_id:89970 AJ565424.1 Hylemonella gracilis WQT2 prokMSA_id:90034 AY328780.1 drinking water system simulator clone DSSD83 prokMSA_id:90056 AY328775.1 drinking water system simulator clone DSSD77 prokMSA_id:90139 AF523054.1 natural mineral water clone B-11 prokMSA_id:90164 AY328796.1 drinking water system simulator clone DSSD99 prokMSA_id:90243 AY328735.1 drinking water system simulator clone DSSD36 prokMSA_id:90313 AY328713.1 drinking water system simulator clone DSSD14 prokMSA_id:90350 AY328702.1 drinking water system simulator clone DSSD2 prokMSA_id:90602 AF523037.1 natural mineral water clone B-6 prokMSA_id:90625 AY328741.1 drinking water system simulator clone DSSD43 prokMSA_id:90735 AY328795.1 drinking water system simulator clone DSSD98 prokMSA_id:90742 AY328776.1 drinking water system simulator clone DSSD79 prokMSA_id:92030 AY360350.1 Acidovorax sp. str. 040703/8067L prokMSA_id:95932 AY160868.1 termite intestinal tract clone COB P5-8 prokMSA_id:97627 AY379977.1 Acidovorax sp. str. AHL 5 prokMSA_id:99487 AY212590.1 water 20 m upstream manure clone 13up prokMSA_id:100094 AY212738.1 water 5 m downstream manure clone 43ds5 prokMSA_id:100099 AY212666.1 water 20 m downstream manure clone 219ds20 prokMSA_id:100317 AY322153.1 micromanipulated cells activated sludge clone AquaspiC prokMSA_id:100815 AB179671.1 groundwater 0.2 m-filterable fraction clone KNA6-NB15 prokMSA_id:100951 AJ606333.1 Comamonadaceae SB1 prokMSA_id:101112 AJ606334.1 Comamonadaceae SB2 prokMSA_id:102279 AY212632.1 water 20 m upstream manure clone 180up prokMSA_id:102445 AY212561.1 water 20 m upstream manure clone 10up prokMSA_id:102488 AB186826.1 polychlorinated dioxin dechlorinating microcosm clone TSAE01 prokMSA_id:102555 AY549551.1 symbiont prokMSA_id:102642 AB186827.1 polychlorinated dioxin dechlorinating microcosm clone TSAI28 prokMSA_id:102652 AY569978.1 Hydrogenophaga sp. str. Esa.33 prokMSA_id:102942 AB186829.1 polychlorinated dioxin dechlorinating microcosm clone TSAO17 prokMSA_id:102946 AB166776.1 EBPR sludge clone UTFS-O04-62-07 prokMSA_id:103194 AY212638.1 water 20 m upstream manure clone 186up prokMSA_id:104415 AY212671.1 water 20 m downstream manure clone 223ds20 prokMSA_id:104909 AB166886.1 Hydrogenophaga sp. str. TR7-01 prokMSA_id:105361 AB166889.1 Hydrogenophaga sp. str. TRS-05 prokMSA_id:105542 AY328783.1 drinking water system simulator clone DSSD86 prokMSA_id:105794 AY625146.1 perchloroethylene-contaminated ground water clone L-2 prokMSA_id:106144 AY578169.1 activated sludge clone ID19 prokMSA_id:106252 AY651926.1 mangrove sediment isolate str. MPsc prokMSA_id:106787 AY512827.1 Acidovorax avenae str. S19n prokMSA_id:106975 AY212640.1 water 20 m upstream manure clone 188up prokMSA_id:107032 AB166780.1 EBPR sludge clone UTFS-OF05-33-21 prokMSA_id:107188 AB166781.1 EBPR sludge clone UTFS-OF06-03 prokMSA_id:108742 AY566583.1 Hydrogenophaga sp. str. PG-10 prokMSA_id:108772 AB195159.1 Acidovorax sp. str. PD-10 prokMSA_id:108780 AB195169.1 Comamonas sp. str. 153S prokMSA_id:108781 AB195170.1 Diaphorobacter sp. str. PD-12 prokMSA_id:109736 AJ536763.1 magnesite mine clone cMM319-17 prokMSA_id:109846 AJ536762.1 magnesite mine clone cMM319-16 prokMSA_id:109879 AY853669.1 napthalene-contaminated soil clone 20 prokMSA_id:109963 AJ536811.1 magnesite mine clone cMM319-02 prokMSA_id:110204 AY853667.1 napthalene-contaminated soil clone 4 prokMSA_id:110542 CR933207.1 municipal wastewater treatment plant clone 054G07_B_DI_P58 prokMSA_id:111280 AJ853499.1 landfill leachate clone GZKB4 prokMSA_id:112479 AY861780.1 Obsidian Pool prime community clone OPPB042 prokMSA_id:112504 AY861747.1 Obsidian Pool prime community clone OPPB004 prokMSA_id:112717 AY928217.1 isolate str. BH1O1 prokMSA_id:112988 AY928226.1 isolate str. BH98-203 prokMSA_id:113039 AB200293.1 activated sludge lab-scale anaerobic aerobic sequencing batch reactor(Run8) fed with aspartate clone UTFS-OF08-d36-85 prokMSA_id:113073 AB200290.1 activated sludge lab-scale anaerobic aerobic sequencing batch reactor(Run6) fed with glutamate clone UTFS-OF06-d151-02 prokMSA_id:113419 AY928219.1 isolate str. BH202 prokMSA_id:113428 AY921814.1 farm soil adjacent to silage storage bunker clone AKYH1169 2.43.2.1.3.1.7894 OTU 1 seq prokMSA_id:18497 AB066239.1 Comamonas sp. str. PJ913 2.43.2.1.3.1.7904 OTU 1 seq prokMSA_id:76621 AJ532684.1 uranium mill tailings clone Gitt-KF-21 2.43.2.1.3.1.7905 OTU 1 seq prokMSA_id:25910 AF388888.1 clone GOBB3-CL120 2.43.2.1.3.1.7908 OTU 1 seq prokMSA_id:51718 AJ421931.2 Germany:Elbe River clone Elb197 2.43.2.1.3.1.7917 OTU 5 seqs prokMSA_id:7133 AF125876.1 thermophilic compost isolate str. DhA-71 prokMSA_id:79664 AY152824.1 Schlegelella thermodepolymerans str. K14 prokMSA_id:80077 AJ512945.1 Caenibacterium thermophilum str. N2-680 prokMSA_id:99971 AY538707.1 Schlegelella thermodepolymerans str. SA1 prokMSA_id:100284 AY538709.1 Schlegelella thermodepolymerans str. KA1 2.43.2.1.3.1.7919 OTU 1 seq prokMSA_id:7061 AB021339.1 strain isolate str. rM4 2.43.2.1.3.1.7920 OTU 2 seqs prokMSA_id:24121 AJ422160.2 Germany:Spittelwasser River clone Spb98 prokMSA_id:73322 AJ007642.1 25/4-32 clone 25/4-32 2.43.2.1.3.1.7928 OTU 1 seq prokMSA_id:82193 AY218738.1 penguin droppings sediments clone KD5-43 2.43.2.1.3.1.7929 OTU 1 seq prokMSA_id:7147 AF068803.1 hydrothermal vent clone VC2.1 Bac29 2.43.2.1.3.1.7937 OTU 2 seqs prokMSA_id:6952 AB021387.1 Pseudomonas spinosa str. ATCC 14606T prokMSA_id:77847 AB077038.1 Pseudomonas spinosa str. IAM 14918 2.43.2.1.3.1.7941 OTU 1 seq prokMSA_id:46854 AF407397.1 MCB-contaminated groundwater-treating reactor clone RB9C10 2.43.2.1.3.1.7942 OTU 1 seq prokMSA_id:41692 AF445679.1 travertine hot spring clone SM1E01 2.43.2.1.3.1.7943 OTU 1 seq prokMSA_id:7151 AF035052.1 Aquabacterium parvum str. B6 2.43.2.1.3.1.7949 OTU 1 seq prokMSA_id:66240 AF508103.1 Variovorax paradoxus TG27 2.43.2.1.3.1.7964 OTU 1 seq prokMSA_id:86368 AY250104.1 napthalene-contaminated sediment clone 76 2.43.2.1.3.1.7965 OTU 135 seqs prokMSA_id:7109 X72724.1 Anoxobacterium dechloraticum prokMSA_id:7145 AB003623.1 Roseateles depolymerans str. 61A (DSM11813) prokMSA_id:7146 AB021407.1 Pseudomonas saccharophila str. DSM 654T prokMSA_id:7148 AB022678.1 str. MBIC3293 S6-1-2w2 prokMSA_id:7149 AB003625.1 Roseateles depolymerans str. 61B2 (DSM11814) prokMSA_id:7150 AB006851.1 Matsuebacter chitosanotabidus prokMSA_id:7154 AF035054.1 Aquabacterium commune str. B8 prokMSA_id:7155 U51102.1 freshwater mud isolate BrG2 prokMSA_id:7156 AF089858.1 Aquabacterium sp. str. Aqua2 prokMSA_id:7157 AB003624.1 Roseateles depolymerans str. 61A (DSM11813) prokMSA_id:7160 AB013424.1 Roseateles sp. str. MC11 prokMSA_id:7161 AB013425.1 Roseateles sp. str. MC12 prokMSA_id:7163 AB003626.1 Roseateles depolymerans str. 61B2 (DSM11814) prokMSA_id:7165 AF035050.1 Aquabacterium citratiphilum str. B4 prokMSA_id:19409 AF236008.1 isolate str. A1040 prokMSA_id:19861 AF368755.1 Pseudomonas saccharophila str. 5-1 prokMSA_id:21295 AF324205.1 clone pA3178 prokMSA_id:24241 AF280853.1 bioreactor clone mle1-19 prokMSA_id:24880 AB074727.1 Japan:Lake Biwa isolate str. S-N(1)-18A prokMSA_id:25579 AJ422161.2 Germany:Spittelwasser River clone Spb111 prokMSA_id:28560 AF445700.1 travertine hot spring clone SM1G08 prokMSA_id:30280 AJ318108.1 Waste-gas biofilter clone BIci13 prokMSA_id:34633 AJ422163.2 Germany:Spittelwasser River clone Spb132 prokMSA_id:35403 AF385528.1 swab advanced noma lesion clone AV011a prokMSA_id:37495 AF293003.1 ferromanganous micronodule clone MNE12 prokMSA_id:37907 AB024307.1 Matsuebacter chitosanotabidus prokMSA_id:37911 AB024306.1 Matsuebacter sp. str. 13 prokMSA_id:38900 AB049106.1 Ideonella sp. str. B511 prokMSA_id:39488 AB049105.1 Ideonella sp. str. B508-1 prokMSA_id:39593 AB074725.1 Japan:Lake Biwa isolate str. S-N(0)-9A prokMSA_id:40398 AB049107.1 Ideonella sp. str. B513 prokMSA_id:40534 AF236007.1 isolate str. A0647 prokMSA_id:40687 AJ422176.2 Germany:Spittelwasser River clone Spb298 prokMSA_id:42662 AF371861.1 phylotype OTU-326 swine intestine clone p-3415-SwA2 prokMSA_id:42874 AY050585.1 MCB-contaminated groundwater-treating reactor clone GOUTA14 prokMSA_id:43210 AF236006.1 isolate str. A0618 prokMSA_id:43917 AF234753.1 sludge clone A37 prokMSA_id:45926 AF244133.1 Burkholderia cepacia str. CIP I-2052 prokMSA_id:48820 AF324206.1 clone pA42B412 prokMSA_id:51521 AJ421916.2 Germany:Elbe River clone Elb59 prokMSA_id:51906 AJ318109.1 Waste-gas biofilter clone BIci13b prokMSA_id:55284 AJ319543.1 salt-crystal clone Michigan-11 prokMSA_id:56024 AJ319572.1 salt-crystal clone Thailand-3-QC prokMSA_id:56335 AJ319546.1 salt-crystal clone Michigan-6 prokMSA_id:58127 AF498703.1 soil isolate Ellin321 prokMSA_id:61846 AF529318.1 PCE-contaminated site clone CLi22 prokMSA_id:64751 AJ319573.1 salt-crystal clone Thailand-4-QC prokMSA_id:64752 AJ319574.1 salt-crystal clone Thailand-5-QC prokMSA_id:64756 AJ319568.1 salt-crystal clone Thailand-12-QC prokMSA_id:64758 AJ319570.1 salt-crystal clone Thailand-19-QC prokMSA_id:64759 AJ319566.1 salt-crystal clone Poland-20-QC prokMSA_id:64763 AJ319562.1 salt-crystal clone Poland-10-QC prokMSA_id:64774 AJ319548.1 salt-crystal clone Poland-18 prokMSA_id:64776 AJ319547.1 salt-crystal clone Michigan-8 prokMSA_id:64779 AJ319545.1 salt-crystal clone Michigan-5 prokMSA_id:65415 AF513107.1 activated sludge foam clone 8 prokMSA_id:74515 AF479324.1 glacial ice isolate str. CanDirty12 prokMSA_id:74807 AJ292626.1 PCB-polluted soil clone WD2102 prokMSA_id:77923 AJ496446.1 slightly acid coastal sand dune isolate str. CTE108 = NCCB100028 CTE108 prokMSA_id:79085 AY177371.2 phenanthrene-degrading isolate str. 90 prokMSA_id:79115 AY187391.1 drinking-water biofilm clone csbio160166 prokMSA_id:79181 AY187348.1 drinking-water biofilm clone csbio160390 prokMSA_id:79206 AY187389.1 drinking-water biofilm clone csbio160143 prokMSA_id:79268 AY187349.1 drinking-water biofilm clone csbio160365 prokMSA_id:79302 AY188315.1 penguin droppings sediment clone KD5-121 prokMSA_id:79334 AY187343.1 drinking-water biofilm clone csbio160307 prokMSA_id:79354 AY187390.1 drinking-water biofilm clone csbio160193 prokMSA_id:79460 AY187346.1 drinking-water biofilm clone csbio160321 prokMSA_id:79492 AY187342.1 drinking-water biofilm clone csbio160367 prokMSA_id:79724 AB087571.1 Leptothrix sp. L10 prokMSA_id:80990 AF468327.1 melt pond on Arctic sea ice floe clone ARKMP-82 prokMSA_id:81133 AY214206.1 benzene-contaminated groundwater clone ZZ15C9 prokMSA_id:81341 AY214207.1 benzene-contaminated groundwater clone ZZ15C11 prokMSA_id:81389 AY218683.1 penguin droppings sediments clone KD8-118 prokMSA_id:81741 AY227003.1 melt pool on Arctic sea ice floe clone ARKMP-94 proteobacterium prokMSA_id:81953 AY169418.1 Variovorax paradoxus prokMSA_id:82480 AJ556799.1 Comamonadaceae MWH55 prokMSA_id:84642 AJ440994.1 lake microbial mat isolate str. R-8875 prokMSA_id:88640 AF523020.1 natural mineral water clone C-19 prokMSA_id:88708 AF523055.1 natural mineral water clone D-24 prokMSA_id:88758 AY328753.1 drinking water system simulator clone DSSD55 prokMSA_id:88838 AF523016.1 natural mineral water clone D-5 prokMSA_id:89073 AF522997.1 natural mineral water clone I-17 prokMSA_id:89113 AF523027.1 natural mineral water clone C-12 prokMSA_id:89169 AF523017.1 natural mineral water clone C-20 prokMSA_id:89220 AF522998.1 natural mineral water clone J-21 prokMSA_id:89328 AF523024.1 natural mineral water clone D-11 prokMSA_id:89760 AF523034.1 natural mineral water clone C-11 prokMSA_id:90197 AF523043.1 natural mineral water clone C-23 prokMSA_id:90347 AY299334.1 isolate str. KNU3 prokMSA_id:90433 AF523025.1 natural mineral water clone I-18 prokMSA_id:90435 AF523044.1 natural mineral water clone D-2 prokMSA_id:90472 AF523004.1 natural mineral water clone C-9 prokMSA_id:91495 AY345493.1 Lake Waiau sediment clone W4-B56 prokMSA_id:91986 AY345396.1 Green Lake water isolate str. G23 prokMSA_id:96716 AY375072.1 deep sea sediment clone B35 prokMSA_id:98905 AY212718.1 water 10 m downstream manure clone 268ds10 prokMSA_id:99042 AJ617689.1 Pseudomonas sp. C-28 prokMSA_id:99309 AY212733.1 water 5 m downstream manure clone 39ds5 prokMSA_id:100826 AY212683.1 water 5 m downstream manure clone 236ds5 prokMSA_id:100878 AB179659.1 groundwater 0.2 m-filterable fraction clone KNA6-NB03 prokMSA_id:101114 AY612302.1 Pteris vittata fronds isolate str. ASRB1 prokMSA_id:101552 AY544767.1 Imtechium assamiensis str. BPTSA16 prokMSA_id:101650 AY212688.1 water 5 m downstream manure clone 240ds5 prokMSA_id:101651 AY212700.1 water 10 m downstream manure clone 251ds10 prokMSA_id:102602 AY212562.1 water 10 m downstream manure clone 110ds10 prokMSA_id:103140 AY212650.1 water 20 m upstream manure clone 197up prokMSA_id:103347 AY429713.1 TCE and cis-DCE contaminated groundwater isolate str. HTCC410 prokMSA_id:103415 AB114618.1 rice plant clone ER-50 prokMSA_id:103477 AY218657.1 penguin droppings sediments clone KD9-144 prokMSA_id:103857 AY212655.1 water 20 m downstream manure clone 209ds20 prokMSA_id:104081 AB128892.1 deep marine sediments Nankai Trough Japan; ODP Leg 190 clone 1174-1091-2 prokMSA_id:104281 AY622272.1 subsurface soil clone B-AI50 prokMSA_id:104478 AY212659.1 water 20 m downstream manure clone 212ds20 prokMSA_id:105018 AY212675.1 water 5 m downstream manure clone 228ds5 prokMSA_id:105632 AY212679.1 water 5 m downstream manure clone 232ds5 prokMSA_id:106033 AY212694.1 water 10 m downstream manure clone 246ds10 prokMSA_id:106825 AY212711.1 water 10 m downstream manure clone 261ds10 prokMSA_id:107239 AY569299.1 pink microbial mat clone YJQ-50 prokMSA_id:107290 AY212570.1 water 10 m downstream manure clone 119ds10 prokMSA_id:107588 AY622246.1 subsurface soil clone B-N19 prokMSA_id:107717 AY212645.1 water 20 m upstream manure clone 192up prokMSA_id:108327 AY770955.1 water injection well Dagang oilfield clone W15 prokMSA_id:108789 AY768825.1 deep terrestrial fracture system clone D8A_5 prokMSA_id:109537 AJ867750.1 melted-ice water clone JFJ-ICE-Bact-07 prokMSA_id:109547 AB199573.1 river water Japan clone RVW-06 prokMSA_id:109619 AY856841.1 Matsuebacter sp. str. 12 prokMSA_id:109658 AY853671.1 napthalene-contaminated soil clone 27 prokMSA_id:110677 AJ867658.1 melted-ice water clone JFJ-ICE-Bact-28 prokMSA_id:110814 AJ867752.1 melted-ice water clone JFJ-ICE-Bact-09 prokMSA_id:111815 AF150702.1 Elbe River snow isolate Iso21 Iso21_1373 prokMSA_id:112368 AF396932.1 Pseudomonas saccharophila str. PRO7 prokMSA_id:113507 AY921693.1 farm soil adjacent to silage storage bunker clone AKYG1800 prokMSA_id:114102 AY921694.1 farm soil adjacent to silage storage bunker clone AKYH1130 prokMSA_id:114194 AY922140.1 farm soil adjacent to silage storage bunker clone AKYH610 2.43.2.1.3.1.7971 OTU 1 seq prokMSA_id:59346 AF502222.1 EBPR sludge lab scale clone HP1B33 2.43.2.1.3.1.7978 OTU 15 seqs prokMSA_id:7022 D30793.1 Variovorax paradoxus prokMSA_id:7028 D88006.1 Variovorax paradoxus str. IAM12373 prokMSA_id:7029 AB003627.1 Variovorax sp. str. WFF52 prokMSA_id:29134 AB051688.1 Variovorax sp. str. HAB-24 prokMSA_id:31737 AB051685.1 Variovorax sp. str. HAB-21 prokMSA_id:41243 AB051689.1 Variovorax sp. str. HAB-27 prokMSA_id:43527 AB051691.1 Variovorax sp. str. HAB-30 prokMSA_id:47559 AB051690.1 Variovorax sp. str. HAB-29 prokMSA_id:49651 AB051687.1 Variovorax sp. str. HAB-23 prokMSA_id:58871 AF423075.1 isolate str. '#33 spreading' prokMSA_id:60338 AF534203.1 soil clone Nap240 prokMSA_id:71064 AF423073.1 isolate str. '#33 clear' prokMSA_id:74636 AJ292627.1 PCB-polluted soil clone WD2115 prokMSA_id:78024 AB098595.1 Variovorax sp. str. TUT1027 prokMSA_id:86262 AJ555474.1 Variovorax sp. str. MN 45.2b.1 2.43.2.1.3.1.7982 OTU 1 seq prokMSA_id:80070 AY188297.1 marine? clone KD1-99 2.43.2.1.3.1.7986 OTU 11 seqs prokMSA_id:39868 AF407381.1 MCB-contaminated groundwater-treating reactor clone RB7C2 prokMSA_id:44459 AF407412.1 MCB-contaminated groundwater-treating reactor clone RB13C6 prokMSA_id:45498 AF407413.1 MCB-contaminated groundwater-treating reactor clone RB13C10 prokMSA_id:50642 AF407396.1 MCB-contaminated groundwater-treating reactor clone RB9C6 prokMSA_id:80799 AF468446.1 Arctic sea ice ARK10281 prokMSA_id:81368 AY214173.1 benzene-contaminated groundwater clone ZZ9C2 prokMSA_id:81427 AY214175.1 benzene-contaminated groundwater clone ZZ9C5 prokMSA_id:81879 AY214177.1 benzene-contaminated groundwater clone ZZ9C12 prokMSA_id:81934 AY214176.1 benzene-contaminated groundwater clone ZZ9C11 prokMSA_id:82365 AY214178.1 benzene-contaminated groundwater clone ZZ9C20 prokMSA_id:82413 AY214181.1 benzene-contaminated groundwater clone ZZ12C5 2.43.2.1.3.1.7987 OTU 3 seqs prokMSA_id:7062 AB021344.1 strain isolate str. rM9 prokMSA_id:7063 AB008429.1 Comamonas sp. str. MBIC3885 E6 prokMSA_id:28959 AB076844.1 Acidovorax sp. str. OS-6 2.43.2.1.3.1.7990 OTU 1 seq prokMSA_id:51665 AF236010.1 isolate str. A0640 2.43.2.1.3.1.7995 OTU 1 seq prokMSA_id:78916 AJ537466.1 Ottowia thiooxydans str. K11 2.43.2.1.3.1.7999 OTU 2 seqs prokMSA_id:6916 AB021341.1 strain isolate str. rM6 prokMSA_id:37659 AF090553.1 ammonia biofilter clone BHA17 2.43.2.1.3.1.8002 OTU 4 seqs prokMSA_id:7115 D16213.1 Rubrivivax gelatinosus prokMSA_id:7118 AB016167.1 Rubrivivax gelatinosus str. IL144 prokMSA_id:7122 D16214.1 Rubrivivax gelatinosus prokMSA_id:68337 AF487435.1 Rubrivivax gelatinosus str. OK3O3 2.43.2.1.3.1.8003 OTU 1 seq prokMSA_id:17198 AF143840.1 hydrocarbon-degrading consortium clone AF1-8 2.43.2.1.3.1.8006 OTU 1 seq prokMSA_id:6969 Z93970.1 clone T96 2.43.2.1.3.1.8009 OTU 1 seq prokMSA_id:64871 AJ412678.1 denitrifying reactor clone 81 2.43.2.1.3.1.8012 OTU 5 seqs prokMSA_id:7052 AF078760.1 Acidovorax konjaci str. ATCC 33996 prokMSA_id:7053 AF137507.1 Acidovorax konjaci str. ICMP 7733 prokMSA_id:7064 AF078763.1 Acidovorax sp. str. IMI 357678 prokMSA_id:52263 AJ420325.1 Acidovorax konjaci str. DSM 7481 prokMSA_id:64550 AJ431731.1 Acidovorax valerianellae str. CFBP 4730 2.43.2.1.3.1.8018 OTU 8 seqs prokMSA_id:7074 AF078764.1 Acidovorax delafieldii str. ATCC 17505 prokMSA_id:7076 AF078767.1 Acidovorax sp. str. 7078 prokMSA_id:24480 X86071.1 unnamed filamentous type 0803 isolate str. Ben05B prokMSA_id:24938 X86070.1 unnamed filamentous type 0803 isolate str. Ben04B prokMSA_id:37472 AJ420323.1 Acidovorax delafieldii str. DSM 50263 prokMSA_id:42288 Y18617.1 Acidovorax sp. str. BSB421 prokMSA_id:45559 AJ009457.1 anaerobic TCB-transforming consortium clone SJA-23 prokMSA_id:84438 AY250109.1 napthalene-contaminated sediment clone 151 2.43.2.1.3.1.8020 OTU 1 seq prokMSA_id:74685 AJ400840.1 Acidovorax wohlfahrtii str. B2/74 2.43.2.1.3.1.8021 OTU 8 seqs prokMSA_id:7038 AF078765.1 Acidovorax facilis str. CCUG 2113 prokMSA_id:7077 AF015487.1 Pseudomonas sp. str. P51 prokMSA_id:19277 AF235013.1 Acidovorax sp. UFZ-B530 prokMSA_id:19406 AJ295481.1 rape rhizosphere clone wr0020 prokMSA_id:24374 AJ420324.1 Acidovorax facilis str. DSM 649 prokMSA_id:25119 AF235010.1 Acidovorax sp. UFZ-B517 prokMSA_id:49770 AY050599.1 MCB-contaminated groundwater-treating reactor clone GOUTB16 prokMSA_id:76895 AJ534662.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN11 proteobacterium 2.43.2.1.3.1.8022 OTU 6 seqs prokMSA_id:7047 AF078762.1 Acidovorax avenae subsp. cattleyae str. NCPPB 961 subsp. prokMSA_id:7054 AF078761.1 Acidovorax avenae subsp. citrulli str. ATCC 29625 subsp. prokMSA_id:7067 AF078759.1 Acidovorax subsp. avenae str. ATCC 19860 prokMSA_id:7070 AF137504.1 Acidovorax avenae subsp. cattleyae str. ICMP 2826 subsp. prokMSA_id:7071 AF137505.1 Acidovorax subsp. avenae str. ICMP 3183 prokMSA_id:7072 AF137506.1 Acidovorax avenae subsp. citrulli str. ICMP 7500 subsp. 2.43.2.1.3.1.8025 OTU 1 seq prokMSA_id:38267 AJ292624.1 PCB-polluted soil clone WD291 2.43.2.1.3.1.8027 OTU 1 seq prokMSA_id:6974 AF078753.1 Hylemonella gracilis str. ATCC 19624 2.43.2.1.3.1.8028 OTU 1 seq prokMSA_id:6975 AF035053.1 isolate str. B7 2.43.2.1.3.1.8031 OTU 1 seq prokMSA_id:7068 AB021328.1 strain isolate str. rJ10 2.43.2.1.3.1.8033 OTU 10 seqs prokMSA_id:6912 M11224.1 Comamonas testosteroni prokMSA_id:6926 AB007996.1 Comamonas testosteroni str. MBIC3840 R2 prokMSA_id:6927 AB007997.1 Comamonas testosteroni str. MBIC3841 R5 prokMSA_id:23431 AB064318.1 Comamonas testosteroni str. JCM 10170 prokMSA_id:29690 AF408328.1 Comamonas sp. clone KL-27-1-15 prokMSA_id:36587 E34470.1 and method detecting Ps. Alcaligenes KB2 strain using prokMSA_id:64241 AF519533.1 Comamonas testosteroni Q10 prokMSA_id:69635 AF434169.1 Comamonas sp. str. AV1A prokMSA_id:71738 AF538933.1 Comamonas testosteroni str. WDL7 prokMSA_id:84537 AY247415.1 Comamonas testosteroni str. NCIMB 10643 2.43.2.1.3.1.8043 OTU 1 seq prokMSA_id:37583 AF422679.1 TCE-sediment clone d156 2.43.2.1.3.1.8046 OTU 5 seqs prokMSA_id:7043 Y18616.1 Acidovorax defluvii str. BSB411 prokMSA_id:7044 AJ012070.1 Acidovorax sp. G7A1 prokMSA_id:7045 AJ012071.1 Acidovorax sp. G8B1 prokMSA_id:81755 AY214202.1 benzene-contaminated groundwater clone ZZ15C1 prokMSA_id:82409 AY214203.1 benzene-contaminated groundwater clone ZZ15C2 2.43.2.1.3.1.8047 OTU 13 seqs prokMSA_id:7129 AF072914.1 Sphaerotilus sp. str. IF4 prokMSA_id:7130 AF072915.1 Sphaerotilus sp. str. IF5 prokMSA_id:7131 AF072916.1 Sphaerotilus sp. str. IF9 prokMSA_id:7132 AF072917.1 Sphaerotilus sp. str. IF14 prokMSA_id:79648 AB087563.1 Sphaerotilus sp. L6 prokMSA_id:79669 AB087566.1 Sphaerotilus sp. L12 prokMSA_id:79735 AB087568.1 Sphaerotilus sp. L19 prokMSA_id:79774 AB087564.1 Sphaerotilus sp. L7 prokMSA_id:79792 AB087560.1 Sphaerotilus sp. L1 prokMSA_id:80068 AB087561.1 Sphaerotilus sp. L2 prokMSA_id:80513 AB087562.1 Sphaerotilus sp. L3 prokMSA_id:80525 AB087565.1 Sphaerotilus sp. L8 prokMSA_id:80616 AB087567.1 Sphaerotilus sp. L13 2.43.2.1.3.1.8049 OTU 1 seq prokMSA_id:7040 Z93965.1 clone T22 2.43.2.1.3.1.8051 OTU 2 seqs prokMSA_id:7041 Z93966.1 clone T36 prokMSA_id:7106 X97598.1 strain clone T36 2.43.2.1.3.1.8057 OTU 1 seq prokMSA_id:6987 Z93954.1 clone T73 2.43.2.1.3.1.8065 OTU 1 seq prokMSA_id:51377 AF296222.1 2.43.2.1.3.1.8067 OTU 11 seqs prokMSA_id:62408 AF529106.1 trichloroethene-contaminated site clone FTL236 proteobacterium prokMSA_id:81090 AY218726.1 penguin droppings sediments clone KD5-110 prokMSA_id:81503 AY218648.1 penguin droppings sediments clone KD4-83 prokMSA_id:81515 AY218635.1 penguin droppings sediments clone KD4-45 prokMSA_id:81758 AY218587.1 penguin droppings sediments clone KD2-60 prokMSA_id:82256 AY218642.1 penguin droppings sediments clone KD4-65 prokMSA_id:82291 AY218607.1 penguin droppings sediments clone KD3-141 prokMSA_id:82377 AY218550.1 penguin droppings sediments clone KD1-118 prokMSA_id:82828 AY250111.1 napthalene-contaminated sediment clone 161 prokMSA_id:83945 AJ440986.1 lake microbial mat isolate str. R-7724 prokMSA_id:84889 AY250098.1 napthalene-contaminated sediment clone 50 2.43.2.1.3.1.8070 OTU 1 seq prokMSA_id:7139 Z18534.1 "Sphearotilus natans" 2.43.2.1.3.1.8074 OTU 1 seq prokMSA_id:73442 AF309815.1 synthetic wastewater tmbr15-22 complete clone wastewater 2.43.2.1.3.1.8075 OTU 3 seqs prokMSA_id:19727 AJ422159.2 Germany:Spittelwasser River clone Spb87 prokMSA_id:26468 AJ422175.2 Germany:Spittelwasser River clone Spb293 prokMSA_id:50434 AJ422173.2 Germany:Spittelwasser River clone Spb280 2.43.2.1.3.1.8076 OTU 11 seqs prokMSA_id:71849 AF097789.1 activated sludge clone 19512 prokMSA_id:73233 AF097787.1 activated sludge clone 19510 prokMSA_id:75555 AY157103.1 UNOX activated sludge system clone B26 prokMSA_id:76075 AY157127.1 UNOX activated sludge system clone F29 prokMSA_id:76221 AY157141.1 aerated plug-f lagoon clone I19 prokMSA_id:76424 AY157077.1 UNOX activated sludge system clone D7 prokMSA_id:76947 AY157080.1 UNOX activated sludge system clone D15 prokMSA_id:77013 AY157095.1 UNOX activated sludge system clone B16 prokMSA_id:77028 AY157101.1 UNOX activated sludge system clone B24 prokMSA_id:77251 AY157086.1 UNOX activated sludge system clone B6 prokMSA_id:112488 AY861783.1 Obsidian Pool prime community clone OPPB048 2.43.2.1.3.1.8079 OTU 2 seqs prokMSA_id:83933 AJ543440.1 nephridia Eisenia foetida clone prokMSA_id:83935 AJ543439.1 nephridia Eisenia foetida clone 2.43.2.1.3.1.8083 OTU 1 seq prokMSA_id:6994 AF173821.1 Antarctic clone LB3-27 2.43.2.1.3.1.8088 OTU 1 seq prokMSA_id:7060 AB021330.1 strain isolate str. rJ12 2.43.2.1.3.1.8098 OTU 1 seq prokMSA_id:35320 AB076863.1 anaerobic sludge clone OS1L-5 2.43.2.1.3.1.8102 OTU 2 seqs prokMSA_id:7124 AF125877.1 thermophilic bioreactor isolate str. DhA-73 bacterium prokMSA_id:105792 AY324139.1 Tepidimonas aquatica str. CLN-1 2.43.2.1.3.1.8105 OTU 13 seqs prokMSA_id:6946 AF078768.1 Hydrogenophaga taeniospiralis str. ATCC 49743 prokMSA_id:18413 AF445688.1 travertine hot spring clone SM1E11 prokMSA_id:36603 AJ422157.2 Germany:Spittelwasser River clone Spb54 prokMSA_id:37507 AB076882.1 anaerobic sludge clone TSL-2-9 prokMSA_id:40546 AJ422170.2 Germany:Spittelwasser River clone Spb256 prokMSA_id:45634 AJ422171.2 Germany:Spittelwasser River clone Spb266 prokMSA_id:51945 AJ422167.2 Germany:Spittelwasser River clone Spb223 prokMSA_id:55821 AY081978.1 atrazine-catabolizing microbial presence methanol clone KRA30+06T prokMSA_id:81562 AY218562.1 penguin droppings sediments clone KD1-44 prokMSA_id:84317 AJ441011.1 lake microbial mat isolate str. R-9284 prokMSA_id:85508 AY250107.1 napthalene-contaminated sediment clone 96 prokMSA_id:88585 AF523058.1 natural mineral water clone B-10 prokMSA_id:94008 AJ582189.1 soil collected near uranium mill tailings Gittersee/Coschuetz clone Gitt-GS-98 2.43.2.1.3.1.8106 OTU 1 seq prokMSA_id:85602 AY258065.1 Acidovorax sp. str. 98-63833 2.43.2.1.3.1.8112 OTU 5 seqs prokMSA_id:17736 AB066235.1 Comamonas sp. str. PJ111 prokMSA_id:32915 AF336312.1 Comamonas testosteroni str. SMCC B329 prokMSA_id:62423 AF529091.1 trichloroethene-contaminated site clone FTL2 proteobacterium prokMSA_id:66754 AF501881.1 Comamonas sp. str. SMCC B0630 prokMSA_id:71872 AF501880.1 Comamonas testosteroni str. SMCC B0589 2.43.2.1.3.1.8113 OTU 2 seqs prokMSA_id:17679 AF234685.1 sludge clone A26b prokMSA_id:48162 AF234681.1 sludge clone A2 2.43.2.1.3.1.8115 OTU 1 seq prokMSA_id:44278 AF296210.1 2.43.2.1.3.1.8117 OTU 1 seq prokMSA_id:36075 AF361193.1 mesoeutrophic reservoir clone 08 2.43.2.1.3.1.8121 OTU 1 seq prokMSA_id:38002 AF234683.1 sludge clone A15 2.43.2.1.3.1.8135 OTU 3 seqs prokMSA_id:62991 AF526920.1 Mars Odyssey Orbiter and encapsulation facility clone T8-7 sp. prokMSA_id:67639 AF275377.1 Comamonas koreensis str. KCTC 12005 prokMSA_id:73570 AF289170.1 freshwater clone PRD01b010B 2.43.2.1.3.1.8138 OTU 14 seqs prokMSA_id:6995 AF078756.1 Aquaspirillum delicatum str. LMG 4328 prokMSA_id:6997 AB021390.1 Pseudomonas lanceolata str. ATCC 14669T prokMSA_id:21463 AY038710.1 epilithon clone TAF-A31 prokMSA_id:25053 AJ319679.1 Polychlorophenol degrading fluidized-bed bioreactor clone FBR-E prokMSA_id:25979 AY050604.1 MCB-contaminated groundwater-treating reactor clone GOUTB19 prokMSA_id:43083 AF418942.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTA10 prokMSA_id:50976 AJ387862.1 clone oxSCC-4 prokMSA_id:56377 AY133071.1 TCE-contaminated site clone ccs221 prokMSA_id:59902 AY133093.1 TCE-contaminated site clone ccslm256 prokMSA_id:62982 AF526926.1 Mars Odyssey Orbiter and encapsulation facility clone T5-4 sp. prokMSA_id:62986 AF526921.1 Mars Odyssey Orbiter and encapsulation facility clone T8-4 sp. prokMSA_id:88413 AY191346.1 Nankai Trough sediments; ODP Leg 190 site 1176A clone prokMSA_id:100515 AY212681.1 water 5 m downstream manure clone 234ds5 prokMSA_id:111114 AB199569.1 river water Japan clone RVW-02 2.43.2.1.3.1.8139 OTU 33 seqs prokMSA_id:6904 AB021417.1 Delftia acidovorans str. IAM 12409T prokMSA_id:6905 AF149849.1 Delftia acidovorans str. MC1 prokMSA_id:7073 AJ007013.1 Acidovorax anthurii CFBP 3232 prokMSA_id:18730 AJ421938.2 Germany:Elbe River clone Elb263 prokMSA_id:20305 AJ421927.2 Germany:Elbe River clone Elb154 prokMSA_id:22797 AF408329.1 Variovorax sp. clone KL-93-1-6 prokMSA_id:29558 AJ295499.1 rape rhizosphere clone wr0041 prokMSA_id:33410 AJ318196.1 Waste-gas biofilter clone BIvii32 prokMSA_id:33769 AF407386.1 MCB-contaminated groundwater-treating reactor clone RB7C8 prokMSA_id:48031 AJ295450.1 rape rhizosphere tsb068 prokMSA_id:62983 AF526925.1 Mars Odyssey Orbiter and encapsulation facility clone T6-5 sp. prokMSA_id:79891 AY188310.1 clone KD4-2 prokMSA_id:80703 AF468328.1 melt pond on Arctic sea ice floe clone ARKMP-77 prokMSA_id:80790 AF468326.1 melt pond on Arctic sea ice floe clone ARKMP-16 prokMSA_id:81482 AY218703.1 clone KD7-112 prokMSA_id:81834 AY218553.1 penguin droppings sediments clone KD1-133 prokMSA_id:88367 AF523029.1 natural mineral water clone G-5 prokMSA_id:88852 AY315175.1 Glacier isolate str. FJS17 prokMSA_id:89052 AY315177.1 Glacier isolate str. FXS1 prokMSA_id:89506 AF523052.1 natural mineral water clone G-2 prokMSA_id:89522 AY315178.1 Glacier isolate str. FJS31 prokMSA_id:89727 AF523019.1 natural mineral water clone B-21 prokMSA_id:89861 AY315176.1 Glacier isolate str. FXS33 prokMSA_id:89980 AY315174.1 Glacier isolate str. FJI50 prokMSA_id:90133 AF523015.1 natural mineral water clone D-7 prokMSA_id:98934 AY752100.1 lake water clone P38.37 prokMSA_id:107948 AB167241.1 Acidovorax sp. str. c112 prokMSA_id:107951 AB167243.1 str. c115 prokMSA_id:108321 AY584576.1 HTCC528 prokMSA_id:108494 AY570622.1 -temperature biodegraded Canadian oil reservoir clone PL-34B10 prokMSA_id:108496 AY570617.1 -temperature biodegraded Canadian oil reservoir clone PL-32B12 prokMSA_id:110226 AJ867749.1 melted-ice water clone JFJ-ICE-Bact-06 prokMSA_id:111999 AY899912.1 Delftia tsuruhatensis str. AD9 2.43.2.1.3.1.8140 OTU 2 seqs prokMSA_id:73389 AF385534.1 swab advanced noma lesion clone AW043 prokMSA_id:99818 AY538706.1 Schlegelella sp. str. KB1a 2.43.2.1.3.1.8147 OTU 1 seq prokMSA_id:7089 AJ002810.1 Comamonas sp. R7 2.43.2.1.3.1.8152 OTU 1 seq prokMSA_id:83899 AJ543434.1 nephridia Octolasion lacteum clone Ol2-2 2.43.2.1.3.1.8162 OTU 1 seq prokMSA_id:30714 AB066237.1 Comamonas sp. str. PJ712 2.43.2.1.4 Ellin6067/SC-I-66 1 seq 2.43.2.1.4.1 sf_1 1 seq 2.43.2.1.4.1.7689 OTU 1 seq prokMSA_id:41200 AF236012.1 isolate str. A0837 2.43.2.1.5 Oxalobacteraceae 178 seqs 2.43.2.1.5.1 sf_1 178 seqs 2.43.2.1.5.1.7663 OTU 1 seq prokMSA_id:20952 AF058385.1 negative extraction control mixed population studies clone MT18 2.43.2.1.5.1.7743 OTU 1 seq prokMSA_id:74451 AF361023.1 Herbaspirillum sp. str. NAH4 2.43.2.1.5.1.7793 OTU 1 seq prokMSA_id:16620 AF375832.1 Zoogloea sp. clone F8 2.43.2.1.5.1.7799 OTU 1 seq prokMSA_id:43089 AB054963.1 isolate str. 1275a 2.43.2.1.5.1.7804 OTU 1 seq prokMSA_id:27849 AF234090.1 Sturt arid-zone soil clone #0319-7F2 2.43.2.1.5.1.7843 OTU 5 seqs prokMSA_id:7352 U54470.1 Massilia timonae timone prokMSA_id:74938 AY157760.1 Massilia timonae str. 97A4424 prokMSA_id:75063 AY157761.1 Massilia timonae str. 99A9205 prokMSA_id:75326 AY157759.1 Massilia timonae str. 85A2206 prokMSA_id:78767 AY177372.2 Massilia sp. str. 72 2.43.2.1.5.1.7845 OTU 1 seq prokMSA_id:19906 AB038368.1 Diaphorina citri symbiont 2.43.2.1.5.1.7861 OTU 1 seq prokMSA_id:27357 AJ387864.1 clone oxSCC-6 2.43.2.1.5.1.7866 OTU 2 seqs prokMSA_id:7343 X92555.1 Paucimonas lemoignei str. LMG 2207 T prokMSA_id:7344 AB021375.1 Paucimonas lemoignei str. ATCC 17989T 2.43.2.1.5.1.7878 OTU 1 seq prokMSA_id:83836 AY250094.1 napthalene-contaminated sediment clone 29 2.43.2.1.5.1.7883 OTU 1 seq prokMSA_id:7326 Z97857.1 2.43.2.1.5.1.7900 OTU 1 seq prokMSA_id:70208 AY013693.1 sample taken upstream landfill clone BVC71 landfill 2.43.2.1.5.1.7913 OTU 1 seq prokMSA_id:7335 D14256.1 Duganella zoogloeoides 2.43.2.1.5.1.7921 OTU 111 seqs prokMSA_id:7288 AB008503.1 ultramicrobacterium str. MY14 prokMSA_id:7289 AB008504.1 ultramicrobacterium str. D-6 prokMSA_id:7290 AB008505.1 ultramicrobacterium str. D-7 prokMSA_id:7291 AB008506.1 ultramicrobacterium str. ND5 prokMSA_id:7295 AB021424.1 Herbaspirillum rubrisubalbicans str. ATCC 19308T prokMSA_id:7316 X65589.1 Telluria mixta prokMSA_id:7347 X65590.1 Telluria chitinolytica prokMSA_id:7365 U49749.1 Oxalobacter formigenes str. BA4 human feces prokMSA_id:7366 U49750.1 Oxalobacter formigenes str. BLISS human feces prokMSA_id:7369 U49754.1 Oxalobacter formigenes str. OXCR laboratory rat cecum prokMSA_id:7371 U49756.1 Oxalobacter formigenes str. OXK human feces prokMSA_id:18940 AJ310394.2 Collimonas fungivorans str. Ter6 prokMSA_id:19827 AF336351.1 Germany: Wulfbach river resurgence Southern Germany isolate str. Wuba26 Wuba26 prokMSA_id:21324 AF407411.1 MCB-contaminated groundwater-treating reactor clone RB13C5 prokMSA_id:26437 AF358019.1 peat soil microcosm clone LO13.5 prokMSA_id:32705 AJ310395.2 Collimonas fungivorans Ter331 prokMSA_id:34084 AJ001384.2 K1 prokMSA_id:35397 AF154097.1 hydrocarbon seep clone BPC087 prokMSA_id:37561 AJ307934.1 derived microbial 'pearl'- community clone sipK84 prokMSA_id:43640 AB049103.1 Herbaspirillum sp. strain B65 Oryza barthii W1407 prokMSA_id:50320 AF371862.1 phylotype OTU-225 swine intestine clone p-2518-18B5 prokMSA_id:57762 AJ496445.1 NCCB100027 prokMSA_id:57763 AJ496444.1 Collimonas fungivorans str. CTE118 = NCCB100032 prokMSA_id:58574 AJ505863.1 Herbaspirillum sp. str. PIV-34-1 = DSM 14683 PIV-34-1 prokMSA_id:59892 AY133107.1 TCE-contaminated site clone ccspost237 prokMSA_id:59896 AY133100.1 TCE-contaminated site clone ccspost2128 prokMSA_id:60344 AF534196.1 soil clone Glu14 prokMSA_id:61829 AF529336.1 PCE-contaminated site clone CLi51 prokMSA_id:62403 AF529109.1 trichloroethene-contaminated site clone FTL254 proteobacterium prokMSA_id:62413 AF529102.1 trichloroethene-contaminated site clone FTL217 proteobacterium prokMSA_id:62422 AF529095.1 trichloroethene-contaminated site clone FTL205 prokMSA_id:63192 AJ496038.1 Oxalobacter sp. p8E prokMSA_id:68775 AF479326.1 glacial ice isolate str. CanDirty89 prokMSA_id:75668 AY154366.1 Herbaspirillum sp. Hg 1 prokMSA_id:76423 AF543312.1 Herbaspirillum lusitanum str. P6-12 prokMSA_id:76810 AY157762.1 Massilia cf. timonae str. 96A14209 prokMSA_id:78721 AY177773.1 soil clone prokMSA_id:79075 AY177375.2 phenanthrene-degrading isolate str. 70-2 prokMSA_id:79614 AY198107.1 melt pond on Arctic sea ice floe clone ARKMP90 prokMSA_id:79646 AY198109.1 melt pond on Arctic sea ice floe clone ARKMP91 prokMSA_id:79836 AF468345.1 Arctic sea ice ARK10157 prokMSA_id:79839 AF468325.1 melt pond on Arctic sea ice floe clone ARKMP-27 prokMSA_id:79895 AF468241.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-28 prokMSA_id:79901 AF468348.2 Arctic sea ice ARK10172 prokMSA_id:79952 AF468331.1 melt pond on Arctic sea ice floe clone ARKMP-113 prokMSA_id:80242 AF468350.1 Arctic sea ice ARK10299 prokMSA_id:80296 AY198108.1 melt pond on Arctic sea ice floe clone ARKMP92 prokMSA_id:80338 AF468329.1 melt pond on Arctic sea ice floe clone ARKMP-56 prokMSA_id:80342 AF468346.2 Arctic sea ice ARK10162 prokMSA_id:80494 AY191275.1 Herbaspirillum seropedicae str. Z78 prokMSA_id:80693 AF468324.1 melt pond on Arctic sea ice floe clone ARKMP-20 prokMSA_id:80776 AF468323.1 melt pond on Arctic sea ice floe clone ARKMP-22 prokMSA_id:80818 AY198106.1 melt pond on Arctic sea ice floe clone ARKMP80 prokMSA_id:80915 AF468301.1 Arctic sea ice; northern Fram Strait clone ARKICE-119 prokMSA_id:80971 AY198105.1 melt pond on Arctic sea ice floe clone ARKMP10 prokMSA_id:80972 AF468330.1 melt pond on Arctic sea ice floe clone ARKMP-110 prokMSA_id:81248 AY227004.1 Arctic sea ice ARK10167 prokMSA_id:81252 AY214204.1 benzene-contaminated groundwater clone ZZ15C3 prokMSA_id:81596 AY218699.1 clone KD7-1 prokMSA_id:81640 AY218774.1 penguin droppings sediments clone KD6-99 prokMSA_id:82198 AY214208.1 benzene-contaminated groundwater clone ZZ15C16 prokMSA_id:82371 AY218739.1 penguin droppings sediments clone KD5-6 prokMSA_id:90518 AY315180.1 Glacier isolate str. FJI10 prokMSA_id:91268 AY345390.1 Green Lake water isolate str. G9 prokMSA_id:91343 AY345556.1 Lake Wai'ele'ele water isolate str. H12 prokMSA_id:91642 AY345545.1 Lake Wai'ele'ele water isolate str. H9 prokMSA_id:93350 AY367037.1 Herbaspirillum sp. Chnp3-5 prokMSA_id:93490 AY367012.1 ultramicrobacterium str. Um1 prokMSA_id:94041 AJ582196.1 soil collected near uranium mill tailings Gittersee/Coschuetz clone Gitt-GS-155 prokMSA_id:94149 AJ582190.1 soil collected near uranium mill tailings Gittersee/Coschuetz clone Gitt-GS-102 prokMSA_id:96354 AJ575693.1 lake water enrichment clone SW20 prokMSA_id:96491 AJ575692.1 lake water clone SW38 prokMSA_id:98773 AJ575691.1 lake water enrichment clone SW15 prokMSA_id:99082 AY622249.1 subsurface soil clone B-AA37 prokMSA_id:99190 AY592785.1 deep-sea mud volcano clone BC07-4B-71 prokMSA_id:99931 AY627562.1 deep-sea clone BC05-2B-03 prokMSA_id:99966 AY622267.1 subsurface soil clone S-E105 prokMSA_id:100208 AF408994.1 isolate str. Ellin152 prokMSA_id:100480 AY281140.1 Collimonas fungivorans str. CTO 166 prokMSA_id:100632 AY281141.1 Collimonas sp. str. CTO 266 prokMSA_id:100789 AY281142.1 Collimonas sp. str. CTO 282 prokMSA_id:100855 AY753304.1 Janthinobacterium sp. str. WSH04-01 prokMSA_id:100935 AY486379.1 Herbaspirillum sp. str. AU3926 prokMSA_id:100947 AY281143.1 Collimonas sp. str. CTO 291 prokMSA_id:100989 AY367029.1 Oxalobacter sp. Es2-1 prokMSA_id:101107 AY281144.1 Collimonas sp. str. CTO 299 prokMSA_id:101270 AY281145.1 Collimonas fungivorans str. CTO 300 prokMSA_id:101441 AY281146.1 Collimonas sp. str. NCCB 100031 prokMSA_id:101607 AY281147.1 Collimonas sp. str. NCCB 100026 prokMSA_id:101779 AY281148.1 Collimonas sp. str. NCCB 100030 prokMSA_id:101934 AY281149.1 Collimonas sp. str. NCCB 100025 prokMSA_id:102028 AY623929.1 ultramicrobacterium str. CP-1 prokMSA_id:102316 AY593479.1 Collimonas fungivorans str. Ter331 prokMSA_id:102766 AY622237.1 subsurface soil clone C-CY80 prokMSA_id:105128 AY281135.1 Collimonas sp. str. CTO 14 prokMSA_id:105290 AY281136.1 Collimonas sp. str. CTO 90 prokMSA_id:105445 AY281137.1 Collimonas sp. str. CTO 91 prokMSA_id:105543 AY281150.1 Collimonas fungivorans str. NCCB 100029 prokMSA_id:105597 AY281138.1 Collimonas sp. str. CTO 94 prokMSA_id:105751 AY281139.1 Collimonas sp. str. CTO 165 prokMSA_id:105930 AY593480.1 Collimonas fungivorans str. Ter331 prokMSA_id:106094 AY625148.1 perchloroethylene-contaminated ground water clone L-4 prokMSA_id:106271 AY592748.1 deep-sea mud volcano clone BC07-4B-09 prokMSA_id:106310 AY512824.1 Massilia timonae str. S11 prokMSA_id:106831 AB074614.1 pea aphid symbiont clone APe4_77 prokMSA_id:107266 AY571835.1 hydrocarbon-contaminated soil clone 4312H prokMSA_id:109381 AY728038.1 Cenibacterium arsenoxidans str. ULPAs1 prokMSA_id:110399 AJ867674.1 melted red snow water clone RS 8-Bact57 prokMSA_id:110502 AJ867673.1 melted red snow water clone RS 8-Bact51 prokMSA_id:110987 AJ871463.1 Massilia timonae CP183-9 prokMSA_id:111270 AY676462.1 Herminiimonas fonticola str. S-94 2.43.2.1.5.1.7968 OTU 1 seq prokMSA_id:7364 U49757.1 Oxalobacter formigenes str. OXB ovinen rumen 2.43.2.1.5.1.8013 OTU 3 seqs prokMSA_id:23044 AF236013.1 isolate str. A1020 prokMSA_id:36180 AF336360.1 Germany: Wulfbach river resurgence Southern Germany isolate str. Wuba70 Wuba70 prokMSA_id:104879 AY212674.1 water 5 m downstream manure clone 227ds5 2.43.2.1.5.1.8032 OTU 14 seqs prokMSA_id:7327 AB021388.1 Pseudomonas mephitica str. ATCC 33665T prokMSA_id:17456 AB042420.1 symbiont prokMSA_id:22796 AF336362.1 Germany: Wulfbach river resurgence Southern Germany isolate str. Wuba73 Wuba73 prokMSA_id:26824 AJ252575.1 agricultural soil SI-5 prokMSA_id:55297 AF529324.1 PCE-contaminated site clone CLi13 prokMSA_id:61808 AF529358.1 PCE-contaminated site clone CLs99 prokMSA_id:61811 AF529353.1 PCE-contaminated site clone CLs79 prokMSA_id:66301 AB074523.1 Aquaspirillum arcticum str. IAM 14963 prokMSA_id:75470 AJ532686.1 uranium mill tailings clone Gitt-KF-125 prokMSA_id:85781 AJ556800.1 Oxalobacteraceae MWH73 prokMSA_id:97163 AJ575697.1 lake water enrichment clone SW57 prokMSA_id:101846 AY592754.1 deep-sea mud volcano clone BC07-4B-15 prokMSA_id:106998 AY592765.1 deep-sea mud volcano clone BC07-4B-30 prokMSA_id:109763 AJ867672.1 melted red snow water clone RS 8-Bact44 2.43.2.1.5.1.8034 OTU 9 seqs prokMSA_id:7282 U34035.1 oral clone 10.40 prokMSA_id:7333 AB010865.1 strain HTC018 clone HTC018 prokMSA_id:7334 AB010869.1 strain HTB091 clone HTB091 prokMSA_id:22305 Y08845.1 Janthinobacterium agaricidamnosum str. W1r3T prokMSA_id:83280 AY247410.1 Janthinobacterium lividum CM37 prokMSA_id:83537 AJ440985.1 lake microbial mat isolate str. R-7687 prokMSA_id:84410 AJ440982.1 lake microbial mat isolate str. R-7614 prokMSA_id:91072 AY344370.1 Lake Kauhako 30 m clone K2-30-5 prokMSA_id:107200 AY693820.1 anaerobic sludge clone EUB63 2.43.2.1.5.1.8058 OTU 19 seqs prokMSA_id:7283 Y10146.1 Herbaspirillum seropedicae str. DSM 6445 ATCC 35892 prokMSA_id:7300 AJ238357.1 Herbaspirillum frisingense str. 75B prokMSA_id:7301 AJ238358.1 Herbaspirillum frisingense str. GSF30 prokMSA_id:7302 AJ238359.1 Herbaspirillum frisingense str. Mb11 prokMSA_id:7306 AF164049.2 Herbaspirillum sp. str. BA10 prokMSA_id:7308 AF164051.2 Herbaspirillum sp. str. BA12 prokMSA_id:7309 AF164052.2 Herbaspirillum sp. str. BA14 prokMSA_id:7310 AF164053.2 Herbaspirillum sp. str. BA15 prokMSA_id:7313 AF164062.2 Herbaspirillum seropedicae str. BA153 prokMSA_id:7314 AF164063.2 Herbaspirillum sp. str. BA161 prokMSA_id:16576 AB049133.1 Herbaspirillum sp. str. B501 prokMSA_id:29908 AF214642.1 Nitrogen-fixing isolate str. COL prokMSA_id:30348 AF164065.2 Herbaspirillum seropedicae str. X8 prokMSA_id:47876 AY049039.1 Pseudomonas huttiensis str. D prokMSA_id:63611 AY043372.1 Herbaspirillum frisingense str. AU2339 prokMSA_id:63615 AY043371.1 Pseudomonas huttiensis str. AU2210A prokMSA_id:69647 AB094401.1 Herbaspirillum chlorophenolicum str. CPW301 prokMSA_id:80103 AY191276.2 Herbaspirillum seropedicae str. M2 prokMSA_id:80182 AY191273.1 Herbaspirillum seropedicae str. Z152 2.43.2.1.5.1.8124 OTU 1 seq prokMSA_id:44186 AJ252617.1 Agricultural soil SC-I-14 () clone SC-I-14 2.43.2.1.5.1.8158 OTU 2 seqs prokMSA_id:7345 Y11585.1 'Mena 23/3-3c' isolate str. Mena 23/3-3c (DSM 6920) 'Mena prokMSA_id:32294 AB006750.1 2-HNA producing isolate MC13289 2.43.2.1.6 Ralstoniaceae 280 seqs 2.43.2.1.6.1 sf_1 280 seqs 2.43.2.1.6.1.7661 OTU 29 seqs prokMSA_id:7373 X93019.1 Polynucleobacter necessarius prokMSA_id:7374 U85122.1 Uncultivated organism integrated epilimnetic sample Limekiln Lake NY USA; close relative Polynucleobacter necessarius clone ACK-L5 proteobacterium prokMSA_id:7376 U85124.1 Uncultivated organism integrated epilimnetic sample Carry Pond NY USA; close relative Polynucleobacter necessarius clone ACK-C4 proteobacterium prokMSA_id:16472 AJ289997.1 Germany: Lake Fuchskuhle north basin clone FukuN33 FukuN33 prokMSA_id:18436 AF141443.1 free-living clone CRE-FL14 prokMSA_id:22870 AJ290074.1 Germany: Lake Fuchskuhle clone FukuS36 prokMSA_id:24264 AJ290052.1 Germany: Lake Fuchskuhle clone FukuS183 prokMSA_id:25062 AJ290020.1 Germany: Lake Fuchskuhle clone FukuS99 prokMSA_id:41436 AF141492.1 free-living clone CRE-FL79 prokMSA_id:44315 AF361192.1 mesoeutrophic reservoir clone 06 prokMSA_id:48589 AJ290076.1 Germany: Lake Fuchskuhle clone FukuS21 prokMSA_id:51668 AF141453.1 free-living clone CRE-FL26 prokMSA_id:52483 AJ290077.1 Germany: Lake Fuchskuhle clone FukuN60 prokMSA_id:70009 AF289154.1 freshwater clone PRD01a006B prokMSA_id:72324 AJ290013.1 Germany: Lake Fuchskuhle south basin clone FukuS35 FukuS35 prokMSA_id:82748 AJ550673.1 Polynucleobacter sp MWH-MoK7 prokMSA_id:83428 AJ550671.1 MWH-MoIso1 prokMSA_id:83449 AJ550654.1 Polynucleobacter sp MWH-MoK4 prokMSA_id:84229 AJ550665.1 MWH-HuK1 prokMSA_id:84339 AJ550657.1 MWH-JaK3 prokMSA_id:84619 AJ550664.1 MWH-T2W17 prokMSA_id:85167 AJ550670.1 MWH-T1W11 prokMSA_id:86341 AF534427.1 Toolik Lake main station at 3 m depth clone TLM03/TLMdgge33 proteobacterium prokMSA_id:86483 AJ550666.1 MWH-HuW1 prokMSA_id:101306 AY212686.1 water 5 m downstream manure clone 239ds5 prokMSA_id:102985 AY212721.1 water 5 m downstream manure clone 28ds5 prokMSA_id:104187 AY752111.1 lake water clone S4.2 prokMSA_id:106508 AJ811013.1 Polynucleobacter sp. FC1 prokMSA_id:106668 AJ811014.1 Polynucleobacter necessarius 2.43.2.1.6.1.7755 OTU 1 seq prokMSA_id:33253 AF361022.1 Ralstonia sp. str. NAH8 2.43.2.1.6.1.7761 OTU 125 seqs prokMSA_id:7404 U28232.1 Ralstonia solanacearum prokMSA_id:7405 U28233.1 Ralstonia solanacearum prokMSA_id:7406 U28238.1 Pseudomonas syzygii prokMSA_id:7407 U28237.1 Pseudomonas syzygii prokMSA_id:7408 AB021403.1 Ralstonia syzygii str. ATCC 49543T prokMSA_id:7410 U28236.1 Blood disease bacterium prokMSA_id:7411 U28235.1 Blood disease bacterium prokMSA_id:7412 U28234.1 Blood disease bacterium prokMSA_id:7415 L37367.1 Ralstonia pickettii prokMSA_id:7417 X67042.1 Ralstonia pickettii prokMSA_id:7422 X67041.1 Ralstonia solanacearum prokMSA_id:7423 X67040.1 Ralstonia solanacearum prokMSA_id:7424 U27983.1 Ralstonia solanacearum prokMSA_id:7427 U27984.1 Ralstonia solanacearum prokMSA_id:7428 U27985.1 Ralstonia solanacearum prokMSA_id:7429 U27986.1 Ralstonia solanacearum prokMSA_id:7430 U27987.1 Ralstonia solanacearum prokMSA_id:7431 U28220.1 Ralstonia solanacearum prokMSA_id:7434 U28221.1 Ralstonia solanacearum prokMSA_id:7435 U28225.1 Ralstonia solanacearum prokMSA_id:7436 U28223.1 Ralstonia solanacearum prokMSA_id:7437 U28231.1 Ralstonia solanacearum prokMSA_id:7438 U28222.1 Ralstonia solanacearum prokMSA_id:7439 U28227.1 Ralstonia solanacearum prokMSA_id:7441 S55002.1 Ralstonia solanacearum prokMSA_id:7442 U28230.1 Ralstonia solanacearum prokMSA_id:7443 U28229.1 Ralstonia solanacearum prokMSA_id:7444 U28226.1 Ralstonia solanacearum prokMSA_id:7445 U28224.1 Ralstonia solanacearum prokMSA_id:7448 X67035.1 Ralstonia solanacearum prokMSA_id:7449 X67036.1 Ralstonia solanacearum prokMSA_id:7450 U28228.1 Ralstonia solanacearum prokMSA_id:18760 AY053492.1 gas hydrate clone AT425_EubE3 prokMSA_id:19239 AF207891.1 Ralstonia solanacearum str. CFBP1036 prokMSA_id:23650 AJ270259.1 Ralstonia mannitolilytica str. RAL4 prokMSA_id:24261 AF280433.1 Ralstonia detusculanense str. APF11 prokMSA_id:26889 AF396930.1 Pseudomonas sp. str. BUV1 prokMSA_id:27013 AF207897.1 Ralstonia solanacearum str. MAFF211266 prokMSA_id:29028 AJ270257.1 Ralstonia mannitolilytica str. LBV407 prokMSA_id:31873 AJ270260.1 Ralstonia pickettii str. RAL01 prokMSA_id:33270 AB024607.1 Ralstonia solanacearum MAFF 301520 prokMSA_id:37841 AJ270256.1 Ralstonia mannitolilytica str. RAL13 prokMSA_id:38402 AB024609.1 Ralstonia solanacearum MAFF 211271 prokMSA_id:39252 AB024605.1 Ralstonia solanacearum MAFF 301527 prokMSA_id:39540 AB045276.1 Ralstonia sp. str. APF11 prokMSA_id:40253 AB024608.1 Ralstonia solanacearum MAFF 301559 prokMSA_id:42127 AF207896.1 Ralstonia solanacearum str. NCPPB342 prokMSA_id:42763 AF207895.1 Ralstonia solanacearum str. CFBP734 prokMSA_id:43651 AB024606.1 Ralstonia solanacearum MAFF 301522 prokMSA_id:44709 AF368759.1 Pseudomonas sp. str. MF254A prokMSA_id:44713 AF207893.1 Ralstonia solanacearum str. NCPPB1018 prokMSA_id:47343 AF207892.1 Ralstonia solanacearum str. CFBP712 prokMSA_id:48001 AF207894.1 Ralstonia solanacearum str. CFBP2146 prokMSA_id:48140 AJ270258.1 Ralstonia mannitolilytica str. LMG6866 prokMSA_id:50403 NC_003296.1 Ralstonia solanacearum str. GMI1000 prokMSA_id:50898 AB024604.1 Ralstonia solanacearum MAFF 211266 prokMSA_id:57520 AB095535.1 Indonesia:Sumatra Island isolate str. BananaE bacterium prokMSA_id:57720 AJ507103.1 Ralstonia sp. str. CCUG 46389 = NF 928T prokMSA_id:58388 AL646064.1 Ralstonia solanacearum str. GMI1000 prokMSA_id:58389 AL646081.1 Ralstonia solanacearum str. GMI1000 prokMSA_id:58390 AL646073.1 Ralstonia solanacearum str. GMI1000 prokMSA_id:58391 AL646072.1 Ralstonia solanacearum str. GMI1000 prokMSA_id:61100 NC_003295.1 Ralstonia solanacearum str. GMI1000 prokMSA_id:63606 AY043380.1 Ralstonia sp. str. AU378 prokMSA_id:64267 AF453507.1 thermal spring clone pKD prokMSA_id:67749 AF488779.1 Ralstonia insidiosa str. AU2944 prokMSA_id:72352 AF434171.1 Ralstonia sp. str. AV5BG prokMSA_id:72714 AY005032.1 subgingival dental plaque clone AK168 prokMSA_id:78927 AY177364.2 Ralstonia sp. str. 97 prokMSA_id:81066 AY216796.1 Ralstonia solanacearum str. 1609 prokMSA_id:82456 AY216798.1 Ralstonia sp. str. Q3-8/14 prokMSA_id:88218 AY268176.1 Ralstonia pickettii str. 2000032023 prokMSA_id:88249 AY268179.1 Ralstonia pickettii str. 2000030791 prokMSA_id:89041 AF443572.1 cells extracted semiarid soil clone O-F-8 prokMSA_id:89721 AY268178.1 Ralstonia pickettii str. 2002721591 prokMSA_id:89827 AY268180.1 Ralstonia pickettii str. 2000030635 prokMSA_id:90376 AY268177.1 Ralstonia pickettii str. 2002721592 prokMSA_id:90720 AY268181.1 Ralstonia sp. str. 1999043680 prokMSA_id:91538 AY345430.1 Lake Kauhako water isolate str. K2-21 prokMSA_id:99406 AY479983.1 Ralstonia sp. str. C1 prokMSA_id:99768 AB167381.1 Ralstonia pickettii prokMSA_id:105091 AY712685.1 Ralstonia solanacearum M prokMSA_id:105134 AY627043.1 B cells transformed Epstein-Barr virus clone GBR-C-30 prokMSA_id:105598 AY741342.1 Ralstonia pickettii str. ATCC 27511 prokMSA_id:105834 AY642432.1 Ralstonia solanacearum str. 0032 prokMSA_id:107284 AY509958.1 Ralstonia sp. 1F2 prokMSA_id:109388 AY838514.1 fruiting body Tricholoma matsutake clone TM07 prokMSA_id:109397 AY838528.1 fruiting body Tricholoma matsutake clone TM16 prokMSA_id:109398 AY838529.1 fruiting body Tricholoma matsutake clone TM17 prokMSA_id:109399 AY838532.1 fruiting body Tricholoma matsutake clone TM18 prokMSA_id:109618 AY864081.1 Ralstonia sp. str. M22 prokMSA_id:109844 AY865607.1 Ralstonia pickettii str. TRW prokMSA_id:111594 AY043379.1 Ralstonia mannitolilytica str. AU255 prokMSA_id:112275 AY043378.1 Ralstonia mannitolilytica str. AU428 prokMSA_id:112769 AY464951.1 Ralstonia solanacearum str. P67 prokMSA_id:112869 AY464970.1 Ralstonia solanacearum str. R277 prokMSA_id:112909 AY464980.1 Ralstonia solanacearum str. MAFF211475 prokMSA_id:112946 AY464954.1 Ralstonia solanacearum str. WP315 prokMSA_id:113056 AY464950.1 Ralstonia solanacearum str. WP266 prokMSA_id:113089 AY464956.1 Ralstonia solanacearum str. MOD5 prokMSA_id:113112 AY464974.1 Ralstonia solanacearum str. MAFF211471 prokMSA_id:113139 AY464969.1 Ralstonia solanacearum str. Ps6-3-1 prokMSA_id:113250 AY464962.1 Ralstonia solanacearum str. E186 prokMSA_id:113383 AY464965.1 Ralstonia solanacearum str. R221 prokMSA_id:113390 AY464957.1 Ralstonia solanacearum str. P3-332 prokMSA_id:113395 AY464958.1 Ralstonia solanacearum str. BU5B prokMSA_id:113427 AY464967.1 Indonesia isolate str. T520 prokMSA_id:113431 AY464976.1 Ralstonia solanacearum str. U154 prokMSA_id:113543 AY464959.1 Ralstonia solanacearum str. LB1 prokMSA_id:113606 AY464963.1 Ralstonia solanacearum str. 27MF prokMSA_id:113608 AY464971.1 Ralstonia solanacearum str. 1446 prokMSA_id:113632 AY464952.1 Ralstonia solanacearum str. WP20 prokMSA_id:113633 AY464973.1 Ralstonia solanacearum str. MAFF211493 prokMSA_id:113670 AY464955.1 Ralstonia solanacearum str. WP306 prokMSA_id:113678 AY464953.1 Ralstonia solanacearum str. 28MF prokMSA_id:113938 AY464975.1 Ralstonia solanacearum str. MAFF211479 prokMSA_id:114009 AY464979.1 Ralstonia solanacearum str. Z8b prokMSA_id:114025 AY464960.1 Ralstonia syzygii str. S444E prokMSA_id:114065 AY464977.1 Ralstonia solanacearum str. MAFF211281 prokMSA_id:114152 AY464968.1 Indonesia isolate str. T633 prokMSA_id:114164 AY464964.1 Ralstonia solanacearum str. MAFF301558 prokMSA_id:114179 AY464978.1 Ralstonia solanacearum str. MAFF211476 prokMSA_id:114200 AY464961.1 Ralstonia solanacearum str. E152 prokMSA_id:114365 AY464972.1 Ralstonia solanacearum str. MAFF211490 prokMSA_id:114414 AY464966.1 Ralstonia syzygii str. T327 2.43.2.1.6.1.7778 OTU 1 seq prokMSA_id:79758 AJ539233.1 Ralstonia insidiosa str. CCUG 46388 2.43.2.1.6.1.7823 OTU 7 seqs prokMSA_id:7398 AJ011503.1 Ralstonia sp. str. BKME-6 prokMSA_id:7402 AB017488.1 Ralstonia sp. str. MBIC3902 GTF1Y prokMSA_id:21182 AB051681.1 Ralstonia sp. str. HAB-02 prokMSA_id:50357 AB031995.1 Ralstonia sp. str. KN1 prokMSA_id:50666 AY047217.1 Wautersia basilensis prokMSA_id:70450 AF312021.1 Wautersia basilensis str. ER121 prokMSA_id:73500 AF312022.1 Wautersia basilensis str. DSM 11853 2.43.2.1.6.1.7859 OTU 17 seqs prokMSA_id:82497 AJ550668.1 MWH-T2W3 prokMSA_id:82561 AJ550672.1 MWH-MoIso2 prokMSA_id:83527 AJ550667.1 Polynucleobacter sp MWH-CaK1 prokMSA_id:83765 AJ550658.1 Polynucleobacter sp MWH-JaW7 prokMSA_id:83856 AJ550662.1 MWH-T1W13 prokMSA_id:84154 AJ550651.1 MWH-VicM1 prokMSA_id:84500 AJ550650.1 MWH-MoNR2 prokMSA_id:84562 AJ550661.1 MWH-TaW3 prokMSA_id:84831 AJ550660.1 Polynucleobacter sp MWH-JaW21 prokMSA_id:85207 AJ550669.1 MWH-T1W2 prokMSA_id:85249 AJ550649.1 Polynucleobacter sp MWH-MoNR1 prokMSA_id:85445 AJ550656.1 MWH-BeK4 prokMSA_id:85580 AJ550655.1 Polynucleobacter sp MWH-CaK5 prokMSA_id:85777 AJ550663.1 MWH-T2W13 prokMSA_id:85828 AJ550653.1 Polynucleobacter sp MWH-MoK3 prokMSA_id:86040 AJ550652.1 Polynucleobacter sp MWH-MoK1 prokMSA_id:86152 AJ550659.1 Polynucleobacter sp MWH-JaW9 2.43.2.1.6.1.7922 OTU 1 seq prokMSA_id:7432 U16144.1 Pseudomonas species 2.43.2.1.6.1.7924 OTU 4 seqs prokMSA_id:7396 AJ002302.1 Wautersia basilensis str. RK1 prokMSA_id:38789 AF390082.1 Ralstonia sp. str. W-15 prokMSA_id:61812 AF529352.1 PCE-contaminated site clone CLs76 prokMSA_id:71396 AY145606.1 10e-7 dilution freshwater samples Weser estuary clone DC11-0-2 proteobacterium 2.43.2.1.6.1.8110 OTU 8 seqs prokMSA_id:7384 X97093.1 species (isolate TM24) clone prokMSA_id:7385 AF067657.1 CDC Group IVc-2 complete isolate str. JHH 1448 IVc-2 prokMSA_id:7392 AF085226.1 Wautersia paucula str. LMG 3413 prokMSA_id:7401 AF098288.1 Ralstonia sp. str. FRA01 prokMSA_id:22192 AF368758.1 Ralstonia sp. str. S23 prokMSA_id:62980 AF526929.1 Mars Odyssey Orbiter and encapsulation facility clone T5-13 sp. prokMSA_id:85415 AB109753.1 Wautersia paucula str. KF709 prokMSA_id:86697 AY177368.2 Ralstonia sp. str. 50 2.43.2.1.6.1.8128 OTU 86 seqs prokMSA_id:7380 M32021.1 Cupriavidus necator prokMSA_id:7381 AF184930.1 24-D-degrading isolate str. TFD43 prokMSA_id:7382 Y10825.1 Wautersia eutropha str. DS185 prokMSA_id:7383 AB007998.1 Ralstonia sp. str. MBIC3838 E2 prokMSA_id:7386 D87999.1 Wautersia eutropha prokMSA_id:7387 D88001.1 Ralstonia sp. str. CT14 prokMSA_id:7388 AF191737.1 Cupriavidus necator str. ATCC 43291 prokMSA_id:7389 AB015605.1 Wautersia eutropha str. KT1 prokMSA_id:7391 Y10824.1 Cupriavidus metallidurans prokMSA_id:7397 AF067833.1 Ralstonia sp. str. TFD41 prokMSA_id:7399 D88009.1 Ralstonia sp. str. CT12 prokMSA_id:7400 AF027407.1 Wautersia eutropha str. JS705 prokMSA_id:17535 AF139729.1 Ralstonia sp. str. JMP134 prokMSA_id:20648 AF300324.1 Wautersia taiwanensis str. LMG 19424 prokMSA_id:20728 AF239160.1 Ralstonia sp. str. PHS1 prokMSA_id:22497 AB051680.1 Ralstonia sp. str. HAB-01 prokMSA_id:24387 AB051682.1 Ralstonia sp. str. HAB-08 prokMSA_id:25026 AY005039.1 Burkholderia sp. oral strain str. C37KA prokMSA_id:27222 AB055427.2 Ralstonia sp. str. 1249 prokMSA_id:27700 AB050020.1 Ralstonia sp. str. BA-0323 prokMSA_id:29604 AB038143.1 Ralstonia sp. str. P-10 prokMSA_id:34687 AF155567.1 Wautersia oxalatica str. DSM 1105 prokMSA_id:40792 AF301897.1 Ralstonia sp. str. U2 prokMSA_id:41961 AF251026.1 Ralstonia sp. str. LD35 prokMSA_id:47468 AF300325.1 Wautersia taiwanensis str. LMG 19425 prokMSA_id:52220 AB051684.1 Ralstonia sp. str. HAB-18 prokMSA_id:52615 E34476.1 and method detecting KB1 strain using prokMSA_id:53615 AF312020.1 Wautersia campinensis str. WS2 prokMSA_id:56268 AF500587.1 Wautersia respiraculi str. AU3369 prokMSA_id:56519 AF500585.1 Wautersia respiraculi str. AU0626 prokMSA_id:56669 AY043381.1 Ralstonia sp. str. AU626 prokMSA_id:58406 AB007995.1 Wautersia eutropha str. P11 prokMSA_id:62981 AF526928.1 Mars Odyssey Orbiter and encapsulation facility clone T5-19 sp. prokMSA_id:66050 AF500586.1 Wautersia respiraculi str. AU1618 prokMSA_id:66058 AF500584.1 Wautersia respiraculi str. AU3801 prokMSA_id:66059 AF500583.1 Wautersia respiraculi str. AU3313 prokMSA_id:67342 AF494541.1 Ralstonia sp. str. BPC3 prokMSA_id:71428 AY040358.1 Wautersia campinensis str. LMG 20579 prokMSA_id:72179 AY040349.1 Wautersia campinensis str. LMG 20568 prokMSA_id:72788 AY040355.1 Wautersia campinensis str. LMG 20576 prokMSA_id:73191 AJ313021.1 Ralstonia sp. MN 43 prokMSA_id:83846 AB109778.1 Wautersia basilensis str. KF708 prokMSA_id:85683 AY221074.1 Mammoth cave clone CCMC0 prokMSA_id:88067 AY303977.1 Wautersia taiwanensis str. MS1 prokMSA_id:92814 AY238507.1 Ralstonia sp. str. 80 prokMSA_id:95536 AB121221.1 Ralstonia sp. str. 1245 prokMSA_id:96429 AB054960.2 Ralstonia sp. str. 1244a prokMSA_id:96723 AB121227.1 Ralstonia sp. str. 1266 prokMSA_id:96923 AB121226.1 Ralstonia sp. str. 1265a prokMSA_id:97047 AB121228.1 Ralstonia sp. str. 1278a prokMSA_id:97064 AB121225.1 Ralstonia sp. str. 1259 prokMSA_id:97344 AB121220.1 Ralstonia sp. str. 1243 prokMSA_id:97465 AB121223.1 Ralstonia sp. str. 1247 prokMSA_id:98039 AB121224.1 Ralstonia sp. str. 1250 prokMSA_id:98665 AB121222.1 Ralstonia sp. str. 1246a prokMSA_id:99807 AY728073.1 decayed velvetleaf seed clone S1-10-CL1 prokMSA_id:102325 AY699587.1 soil contaminated with polyaromatic hydrocarbons clone NAP2d3 prokMSA_id:102639 AY699589.1 soil contaminated with polyaromatic hydrocarbons clone SAL2d1 prokMSA_id:103747 AY512626.1 Stenotrophomonas maltophilia str. A1Y15 prokMSA_id:105270 NZ_AADY01000005.1 Ralstonia eutropha str. JMP134 prokMSA_id:107023 AY699595.1 soil contaminated with polyaromatic hydrocarbons clone NAP7d40 prokMSA_id:107451 AY691391.1 Wautersia sp. tpig.6a prokMSA_id:107595 AY691392.1 Wautersia sp. mapud10.1 prokMSA_id:107749 AY691393.1 Wautersia sp. tpud27.6 prokMSA_id:107897 AB167178.1 Ralstonia sp. str. c308 prokMSA_id:107918 AB167205.1 Wautersia eutropha str. c32 prokMSA_id:107922 AB167209.1 Ralstonia sp. str. c41 prokMSA_id:107926 AB167214.1 Ralstonia sp. str. c49 prokMSA_id:109357 AY838472.1 fruiting body Pleurotus eryngii clone PE16 prokMSA_id:109359 AY838474.1 fruiting body Pleurotus eryngii clone PE18 prokMSA_id:111474 AY860231.1 Cupriavidus gilardii str. AU6442 prokMSA_id:111522 AY860240.1 Cupriavidus respiraculi str. AU4323 prokMSA_id:111536 AY860247.1 Cupriavidus respiraculi str. AU6038 prokMSA_id:111546 AY860237.1 Cupriavidus respiraculi str. AU3775 prokMSA_id:111624 AY860238.1 Cupriavidus respiraculi str. AU4028 prokMSA_id:111644 AY860243.1 Cupriavidus respiraculi str. AU4988 prokMSA_id:111717 AY860241.1 Cupriavidus respiraculi str. AU4622 prokMSA_id:111816 AY860248.1 Cupriavidus respiraculi str. AU6513 prokMSA_id:111823 AY860232.1 Cupriavidus respiraculi str. AU6731 prokMSA_id:111827 AY860225.1 Cupriavidus gilardii str. AU1529 prokMSA_id:111839 AY860227.1 Cupriavidus gilardii str. AU3713 prokMSA_id:111886 AY860228.1 Cupriavidus gilardii str. AU4267 prokMSA_id:111943 AY860246.1 Cupriavidus respiraculi str. AU5921 prokMSA_id:112085 AY860245.1 Cupriavidus respiraculi str. AU5821 prokMSA_id:112117 AY860239.1 Cupriavidus respiraculi str. AU4306 prokMSA_id:112181 AY860226.1 Cupriavidus gilardii str. AU2756 2.43.2.1.6.1.8163 OTU 1 seq prokMSA_id:23357 AF361194.1 mesoeutrophic reservoir clone 27 2.43.2.1.7 Unclassified 26 seqs 2.43.2.1.7.1 sf_1 26 seqs 2.43.2.1.7.1.7727 OTU 3 seqs prokMSA_id:17531 AF445099.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc30 prokMSA_id:44507 AF445087.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc3 prokMSA_id:52348 AF445105.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc39 2.43.2.1.7.1.7748 OTU 5 seqs prokMSA_id:75970 AF431292.1 lodgepole pine rhizosphere soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Smithers BC Canada clone S37.42SM prokMSA_id:76245 AF431317.1 lodgepole pine rhizosphere soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Prince George BC Canada clone S51.30PG prokMSA_id:84097 AY214705.1 soil clone SL2-2-D4F prokMSA_id:84231 AY214665.1 soil clone SL2-1-A4 prokMSA_id:86126 AY214628.1 soil clone SL2-1-E4 2.43.2.1.7.1.7785 OTU 1 seq prokMSA_id:51243 U70706.1 Cape Hatteras picoplankton clone OM156 2.43.2.1.7.1.7832 OTU 1 seq prokMSA_id:16927 AF259597.1 Australia clone 5 2.43.2.1.7.1.7835 OTU 1 seq prokMSA_id:49415 AB066232.1 Burkholderia sp. str. PJ431 2.43.2.1.7.1.7846 OTU 1 seq prokMSA_id:7225 AF013531.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.43.2.1.7.1.7850 OTU 1 seq prokMSA_id:7035 Z93959.1 clone T65 2.43.2.1.7.1.7851 OTU 1 seq prokMSA_id:7036 Z93961.1 clone T59 2.43.2.1.7.1.7879 OTU 1 seq prokMSA_id:7094 Z93962.1 clone T69 2.43.2.1.7.1.7912 OTU 1 seq prokMSA_id:29208 AF445131.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc71 2.43.2.1.7.1.7944 OTU 4 seqs prokMSA_id:26793 AJ289885.1 Limnobacter thiooxidans str. CS-K2 prokMSA_id:27619 AJ295478.1 rape rhizosphere clone wr0017 prokMSA_id:90492 AF522999.1 natural mineral water clone D-15 prokMSA_id:104070 AY429718.1 Limnobacter sp. str. HTCC376 2.43.2.1.7.1.8038 OTU 1 seq prokMSA_id:30949 AF316739.1 Crater Lake clone CL500-36 2.43.2.1.7.1.8055 OTU 1 seq prokMSA_id:21288 AJ232787.1 rhizosphere soil Trifolium repens clone TRS7 2.43.2.1.7.1.8086 OTU 1 seq prokMSA_id:41478 AB074735.1 Japan:Lake Biwa isolate str. S-N(nd)-12A 2.43.2.1.7.1.8087 OTU 1 seq prokMSA_id:7110 Z93979.1 clone T10 2.43.2.1.7.1.8091 OTU 1 seq prokMSA_id:21411 AJ421925.2 Germany:Elbe River clone Elb136 2.43.2.1.7.1.8107 OTU 1 seq prokMSA_id:7127 AF013518.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.43.2.10 Unclassified 35 seqs 2.43.2.10.1 Unclassified 35 seqs 2.43.2.10.1.1 sf_3 35 seqs 2.43.2.10.1.1.7664 OTU 1 seq prokMSA_id:74566 AF388885.1 clone GOBB3-CL330 2.43.2.10.1.1.7679 OTU 1 seq prokMSA_id:23416 AJ252648.1 Agricultural soil SC-I-66 () clone SC-I-66 2.43.2.10.1.1.7688 OTU 2 seqs prokMSA_id:6483 AF159665.1 related to Methylophilus group prokMSA_id:6484 AF159666.1 related to Methylophilus group 2.43.2.10.1.1.7707 OTU 1 seq prokMSA_id:18748 AF445123.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc63 2.43.2.10.1.1.7723 OTU 1 seq prokMSA_id:50035 AF422586.1 clone t011 2.43.2.10.1.1.7728 OTU 1 seq prokMSA_id:6736 AJ003781.1 clone Dr18 2.43.2.10.1.1.7765 OTU 2 seqs prokMSA_id:21767 AF337863.2 gold mine clone D42 prokMSA_id:83988 AY274141.1 gold mine tailings clone D135 2.43.2.10.1.1.7776 OTU 1 seq prokMSA_id:82952 AY242698.1 soil clone Tc131-42 2.43.2.10.1.1.7798 OTU 1 seq prokMSA_id:76540 AF431285.1 lodgepole pine rhizosphere soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Smithers BC Canada clone S36.51SM 2.43.2.10.1.1.7806 OTU 1 seq prokMSA_id:28735 AF469364.1 clone 33-PA45B98 2.43.2.10.1.1.7852 OTU 1 seq prokMSA_id:31143 AJ007650.1 1405-9 clone 1405-9 2.43.2.10.1.1.7923 OTU 1 seq prokMSA_id:6487 AB022337.1 obligately oligotrophic isolate str. POCPN-5 2.43.2.10.1.1.7954 OTU 4 seqs prokMSA_id:25535 AY037674.1 earthworm cast clone C016 prokMSA_id:83752 AY214625.1 soil clone SL2-1-F1 prokMSA_id:83755 AY214615.1 soil clone SL2-1-F9 prokMSA_id:84959 AY214642.1 soil clone SL2-1-D10 2.43.2.10.1.1.7974 OTU 1 seq prokMSA_id:65702 AF507678.1 pinyon-juniper forest soil clone C1235 2.43.2.10.1.1.7997 OTU 1 seq prokMSA_id:65795 AF507539.1 pinyon-juniper forest soil clone S0173 2.43.2.10.1.1.8007 OTU 1 seq prokMSA_id:65813 AF507519.1 pinyon-juniper forest soil clone S0159 2.43.2.10.1.1.8024 OTU 1 seq prokMSA_id:6880 AF050626.1 contaminated aquifer clone WsCH66 2.43.2.10.1.1.8029 OTU 1 seq prokMSA_id:40655 AF188168.1 directly Pfiesteria piscicida clone KEppi37 2.43.2.10.1.1.8036 OTU 1 seq prokMSA_id:74988 AJ519624.1 Uranium mill tailings soil sample clone Sh765B-TzT-132 proteobacterium 2.43.2.10.1.1.8039 OTU 2 seqs prokMSA_id:23587 AF296195.1 prokMSA_id:44238 AF296203.1 2.43.2.10.1.1.8045 OTU 1 seq prokMSA_id:6988 Z93955.1 clone T67 2.43.2.10.1.1.8084 OTU 1 seq prokMSA_id:35310 AF388887.1 clone GOBB3-CL138 2.43.2.10.1.1.8099 OTU 1 seq prokMSA_id:23232 AJ387861.1 clone oxSCC-3 2.43.2.10.1.1.8101 OTU 1 seq prokMSA_id:7197 U62844.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB23 2.43.2.10.1.1.8111 OTU 2 seqs prokMSA_id:44377 AF320975.1 Lake Michigan sediment clone LMBA38 prokMSA_id:52341 AF320974.1 Lake Michigan sediment clone LMBA38 2.43.2.10.1.1.8114 OTU 1 seq prokMSA_id:67829 AY082479.1 clone 44a-U1-9 2.43.2.10.1.1.8116 OTU 1 seq prokMSA_id:6542 Z69151.1 sp. (clone pH4.2A/23) clone pH4.2A/23 2.43.2.10.1.1.8153 OTU 1 seq prokMSA_id:28345 AJ231056.1 11 clone 2.43.2.2 Ellin6095/SC-I-39 8 seqs 2.43.2.2.1 Unclassified 8 seqs 2.43.2.2.1.1 sf_1 8 seqs 2.43.2.2.1.1.7671 OTU 1 seq prokMSA_id:84108 AY221080.1 Mammoth cave clone CCU24 2.43.2.2.1.1.7681 OTU 1 seq prokMSA_id:21765 AF234707.1 sludge clone A21b 2.43.2.2.1.1.7766 OTU 1 seq prokMSA_id:64015 AB087358.1 CF+FYM-soil clone F31 2.43.2.2.1.1.8069 OTU 3 seqs prokMSA_id:63247 AF523975.1 forested wetland clone FW145 prokMSA_id:63263 AF523956.1 forested wetland clone FW2 prokMSA_id:63267 AF523953.1 forested wetland clone FW66 2.43.2.2.1.1.8093 OTU 1 seq prokMSA_id:36067 AJ252633.1 agricultural soil clone SC-I-39 2.43.2.2.1.1.8148 OTU 1 seq prokMSA_id:46075 AJ252660.1 agricultural soil clone SC-I-84 2.43.2.3 Hydrogenophilales 24 seqs 2.43.2.3.1 Hydrogenophilaceae 23 seqs 2.43.2.3.1.1 sf_1 22 seqs 2.43.2.3.1.1.7684 OTU 1 seq prokMSA_id:64665 AJ316618.1 Thiobacillus plumbophilus str. DSM 6690 Gro7 2.43.2.3.1.1.7690 OTU 1 seq prokMSA_id:40122 AF402975.1 hot spring clone bacteriap16 2.43.2.3.1.1.7706 OTU 13 seqs prokMSA_id:6685 AB015328.1 hot spring isolate str. HMD444 prokMSA_id:21915 AF280851.1 bioreactor clone mle1-14 prokMSA_id:45235 AF280842.1 bioreactor clone mle1-3 prokMSA_id:50274 AF280827.1 bioreactor clone tbr4-2 prokMSA_id:70430 AF280821.1 bioreactor clone tbr1-3 prokMSA_id:70657 AF280828.1 bioreactor clone tbr4-5 prokMSA_id:70880 AF280822.1 bioreactor clone tbr1-4 prokMSA_id:72026 AF280864.1 bioreactor clone mle1-43 prokMSA_id:72616 AF280835.1 bioreactor clone tbr4-67 prokMSA_id:72763 AF280860.1 bioreactor clone mle1-32 prokMSA_id:73564 AF280833.1 bioreactor clone tbr4-24 prokMSA_id:84214 AY219713.1 Petrobacter succinatimandens str. BON4 prokMSA_id:86365 AY219714.1 Petrobacter succinatimandens str. BON2 2.43.2.3.1.1.7783 OTU 2 seqs prokMSA_id:6678 AB009828.1 Hydrogenophilus thermoluteolus prokMSA_id:6684 AB009829.1 Hydrogenophilus thermoluteolus 2.43.2.3.1.1.7953 OTU 3 seqs prokMSA_id:6679 AF026979.1 hot spring clone OPB30 prokMSA_id:34315 AF445689.1 travertine hot spring clone SM1E12 prokMSA_id:41556 AF445741.1 travertine hot spring clone SM2G09 2.43.2.3.1.1.7975 OTU 1 seq prokMSA_id:85885 AY222297.1 silica sinter depositing geothermal power station discharge drain clone ST01-SN1D proteobacterium 2.43.2.3.1.1.8048 OTU 1 seq prokMSA_id:26330 AF441892.1 clone CD11B1 2.43.2.3.1.2 sf_2 1 seq 2.43.2.3.1.2.8756 OTU 1 seq prokMSA_id:7759 X97534.1 Halothiobacillus sp. 2.43.2.3.2 Unclassified 1 seq 2.43.2.3.2.1 sf_1 1 seq 2.43.2.3.2.1.8151 OTU 1 seq prokMSA_id:29097 AF280832.1 bioreactor clone tbr4-23 2.43.2.4 Methylophilales 19 seqs 2.43.2.4.1 Methylophilaceae 15 seqs 2.43.2.4.1.1 sf_1 15 seqs 2.43.2.4.1.1.7673 OTU 1 seq prokMSA_id:24165 AJ318162.1 Waste-gas biofilter clone BIqi38 2.43.2.4.1.1.7892 OTU 2 seqs prokMSA_id:71394 AJ517772.1 Methylophilus freyburgensis str. I 42T prokMSA_id:108436 AB193725.1 Methylophilus leisingeri str. DSM 6813 2.43.2.4.1.1.8017 OTU 1 seq prokMSA_id:28664 AF388908.2 Methylophilus sp. clone GOBB3-CL121 2.43.2.4.1.1.8050 OTU 1 seq prokMSA_id:50624 AJ318156.1 Waste-gas biofilter clone BIki2 2.43.2.4.1.1.8064 OTU 1 seq prokMSA_id:30012 AF448464.1 Methylophilus sp. clone GOBB3-CL275 2.43.2.4.1.1.8137 OTU 7 seqs prokMSA_id:6524 U85120.1 Uncultivated organism integrated epilimnetic sample Carry Pond NY USA clone ACK-C30 proteobacterium prokMSA_id:6587 Z99999.1 freshwater clone LD28 prokMSA_id:32326 AY013694.1 sample taken upstream landfill clone BVC68 landfill prokMSA_id:47151 AF289159.1 freshwater clone PRD01a011B prokMSA_id:70311 AF289172.1 planktonic freshwater clone PRD01B012B prokMSA_id:101544 AY212615.1 water 20 m downstream manure clone 163ds20 prokMSA_id:103711 AY212654.1 water 20 m downstream manure clone 208ds20 2.43.2.4.1.1.8150 OTU 1 seq prokMSA_id:37301 AB027139.1 Methylobacillus sp. str. 12S 2.43.2.4.1.1.8159 OTU 1 seq prokMSA_id:34857 AF448462.1 Methylophilus sp. clone GOBB3-CL297 2.43.2.4.2 Unclassified 4 seqs 2.43.2.4.2.1 sf_1 4 seqs 2.43.2.4.2.1.7687 OTU 3 seqs prokMSA_id:6485 U70704.1 marine clone OM43 prokMSA_id:48715 AJ400339.1 marine clone ZD0202 prokMSA_id:105694 AJ630747.1 marine surface water clone BET_1A5H14 2.43.2.4.2.1.7842 OTU 1 seq prokMSA_id:29664 AJ400352.1 marine clone ZD0412 2.43.2.5 MND1 clone group 15 seqs 2.43.2.5.1 Unclassified 15 seqs 2.43.2.5.1.1 sf_1 15 seqs 2.43.2.5.1.1.7750 OTU 1 seq prokMSA_id:75583 AJ518782.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-35 2.43.2.5.1.1.7808 OTU 1 seq prokMSA_id:85647 AY221081.1 Mammoth cave clone CCU25 2.43.2.5.1.1.7818 OTU 1 seq prokMSA_id:76574 AJ534623.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-215 proteobacterium 2.43.2.5.1.1.7825 OTU 1 seq prokMSA_id:75756 AJ518783.1 uranium mining waste pile clone JG37-AG-125 proteobacterium 2.43.2.5.1.1.7896 OTU 4 seqs prokMSA_id:16904 AF320925.1 Lake Michigan sediment clone LMBGA6-26 prokMSA_id:48832 AF320917.1 Lake Michigan sediment clone LMBGA4 prokMSA_id:72414 AF320924.1 Lake Michigan sediment clone LMRTGA4 prokMSA_id:78574 AJ536880.1 uranium mining waste pile soil sample clone JG30-KF-AS41 2.43.2.5.1.1.7993 OTU 5 seqs prokMSA_id:27267 AF423222.1 soil clone 1326-2 prokMSA_id:82483 AY242699.1 soil clone Tc119-F01 prokMSA_id:85125 AY242700.1 soil clone Tc133-98 prokMSA_id:85756 AY242701.1 rhizosphere soil clone Tc122-E07 prokMSA_id:113523 AY921821.1 farm soil adjacent to silage storage bunker clone AKYH490 2.43.2.5.1.1.8023 OTU 1 seq prokMSA_id:49039 AF293006.1 ferromanganous micronodule clone MND1 2.43.2.5.1.1.8134 OTU 1 seq prokMSA_id:40231 AJ296553.1 uranium mining mill tailing clone GR-WP33-36 GR-WP33-36 2.43.2.6 Neisseriales 55 seqs 2.43.2.6.1 Neisseriaceae 50 seqs 2.43.2.6.1.1 sf_1 50 seqs 2.43.2.6.1.1.7662 OTU 1 seq prokMSA_id:62979 AF526930.1 Mars Odyssey Orbiter and encapsulation facility clone T5-1 sp. 2.43.2.6.1.1.7665 OTU 2 seqs prokMSA_id:56599 AB087261.2 Simonsiella steedae str. IAM 14972 prokMSA_id:70506 AF328153.1 Simonsiella steedae str. ATCC27409T 2.43.2.6.1.1.7675 OTU 2 seqs prokMSA_id:75279 AY157706.1 Neisseria sp. str. CCUG 46911 prokMSA_id:75888 AY157705.1 Neisseria sp. str. CCUG 46910 2.43.2.6.1.1.7701 OTU 2 seqs prokMSA_id:6375 L06174.1 Vitreoscilla stercoraria prokMSA_id:6376 M22519.1 Vitreoscilla stercoraria 2.43.2.6.1.1.7703 OTU 25 seqs prokMSA_id:6373 AB017487.1 Chromobacterium sp. str. MBIC3901 GTF1V prokMSA_id:55614 AY117554.1 Chromobacterium violaceum str. 52 prokMSA_id:56639 AY117562.1 Chromobacterium sp. str. 27 prokMSA_id:63483 AY117571.1 Chromobacterium sp. str. 70 prokMSA_id:63486 AY117568.1 Chromobacterium sp. str. 67 prokMSA_id:63488 AY117566.1 Chromobacterium sp. str. 62 prokMSA_id:63489 AY117565.1 Chromobacterium sp. str. 53 prokMSA_id:63490 AY117564.1 Chromobacterium sp. str. 44 prokMSA_id:63491 AY117563.1 Chromobacterium sp. str. 32 prokMSA_id:63492 AY117560.1 Chromobacterium sp. str. 06 prokMSA_id:63493 AY117561.1 Chromobacterium sp. str. 21 prokMSA_id:63494 AY117559.1 Chromobacterium sp. str. 46 prokMSA_id:63495 AY117558.1 Chromobacterium sp. str. 29 prokMSA_id:63496 AY117557.1 Chromobacterium violaceum str. 07 prokMSA_id:63497 AY117556.1 Chromobacterium sp. str. 23 prokMSA_id:63500 AY117555.1 Chromobacterium sp. str. 64 prokMSA_id:63503 AY117553.1 Chromobacterium violaceum str. 49 prokMSA_id:63505 AY117552.1 Chromobacterium sp. str. 48 prokMSA_id:92140 AE016913.1 Chromobacterium violaceum str. ATCC 12472 prokMSA_id:92311 AE016922.1 Chromobacterium violaceum str. ATCC 12472 prokMSA_id:92420 AE016921.1 Chromobacterium violaceum str. ATCC 12472 prokMSA_id:92520 AE016924.1 Chromobacterium violaceum str. ATCC 12472 prokMSA_id:92865 AE016911.1 Chromobacterium violaceum str. ATCC 12472 prokMSA_id:92928 AE016915.1 Chromobacterium violaceum str. ATCC 12472 prokMSA_id:93662 NC_005085.1 Chromobacterium violaceum ATCC 12472 2.43.2.6.1.1.7729 OTU 3 seqs prokMSA_id:63484 AY117569.1 Chromobacterium sp. str. 68 prokMSA_id:63485 AY117572.1 Chromobacterium sp. str. 71 prokMSA_id:63487 AY117567.1 Chromobacterium sp. str. 66 2.43.2.6.1.1.7862 OTU 1 seq prokMSA_id:6374 AB017489.1 str. MBIC3903 GTF1B 2.43.2.6.1.1.7867 OTU 1 seq prokMSA_id:6378 L06170.1 Neisseria canis 2.43.2.6.1.1.7885 OTU 3 seqs prokMSA_id:6380 M22517.1 Kingella kingae prokMSA_id:107042 AY551997.1 Kingella kingae C01-2424 prokMSA_id:107340 AY551999.1 Kingella kingae str. ATCC 23330 2.43.2.6.1.1.7889 OTU 1 seq prokMSA_id:77630 AB089102.1 termite gut homogenate clone Rs-D51 proteobacterium 2.43.2.6.1.1.7945 OTU 1 seq prokMSA_id:66305 AB074518.1 Aquaspirillum serpens str. IAM 13944 2.43.2.6.1.1.8004 OTU 2 seqs prokMSA_id:16445 AF389085.1 Laribacter hongkongensis str. HKU1 prokMSA_id:40538 AF449219.1 Laribacter hongkongensis str. NZ3166_99 2.43.2.6.1.1.8041 OTU 1 seq prokMSA_id:64884 AB076000.1 Aquaspirillum putridiconchylium str. IAM 14964 2.43.2.6.1.1.8066 OTU 1 seq prokMSA_id:36932 AF227863.1 clinical isolate 82348 2.43.2.6.1.1.8092 OTU 1 seq prokMSA_id:58031 AF487709.1 Neisseria dentiae str. V33 2.43.2.6.1.1.8129 OTU 2 seqs prokMSA_id:20511 AB074711.1 Japan:Lake Biwa isolate str. S-(1)-8B prokMSA_id:34835 AB074732.1 Japan:Lake Biwa isolate str. S-N(1)-8C 2.43.2.6.1.1.8143 OTU 1 seq prokMSA_id:42684 AY005029.1 subgingival dental plaque clone AK105 2.43.2.6.2 Unclassified 5 seqs 2.43.2.6.2.1 sf_1 5 seqs 2.43.2.6.2.1.7683 OTU 4 seqs prokMSA_id:6367 U89333.1 Microvirgula aerodenitrificans str. Sgly2 prokMSA_id:66302 AB074526.1 Microvirgula aerodenitrificans str. IAM 14943 prokMSA_id:74077 AF455113.1 Microvirgula aerodenitrificans str. NZ753-98 prokMSA_id:110507 AJ487013.2 Microvirgula aerodenitrificans str. LMG 4329 2.43.2.6.2.1.8037 OTU 1 seq prokMSA_id:107650 AY323827.1 Chitinimonas taiwanensis str. cf 2.43.2.7 Nitrosomonadales 123 seqs 2.43.2.7.1 Gallionellaceae 1 seq 2.43.2.7.1.1 sf_1 1 seq 2.43.2.7.1.1.7947 OTU 1 seq prokMSA_id:6494 L07897.1 Gallionella ferruginea 2.43.2.7.2 Nitrosomonadaceae 113 seqs 2.43.2.7.2.1 sf_1 113 seqs 2.43.2.7.2.1.7672 OTU 1 seq prokMSA_id:6662 Z46991.1 Nitrosomonas marina str. Nm22 2.43.2.7.2.1.7682 OTU 1 seq prokMSA_id:40900 AF363291.1 Nitrosovibrio sp. str. RY6A 2.43.2.7.2.1.7694 OTU 1 seq prokMSA_id:43839 AF363290.1 Nitrosovibrio sp. str. RY3C 2.43.2.7.2.1.7770 OTU 7 seqs prokMSA_id:6643 AB000702.1 Nitrosomonas sp. HPC101 prokMSA_id:6650 AJ224941.1 Nitrosomonas sp. Koll-21 prokMSA_id:46231 AF353160.1 Nitrosomonas europaea str. ATCC25978 prokMSA_id:53386 AB079053.1 Nitrosomonas sp. ENI-11 prokMSA_id:82338 AY135356.1 Ammonia-oxidizing NS500-9 prokMSA_id:82677 BX321856.1 Nitrosomonas europaea str. ATCC 19718 prokMSA_id:112205 CQ796911.1 AOB Type C R5clone47 clone 2.43.2.7.2.1.7774 OTU 1 seq prokMSA_id:42181 AF338207.1 USA: Chesapeake Bay 2.43.2.7.2.1.7777 OTU 2 seqs prokMSA_id:22792 AF353164.1 Nitrosomonas sp. DYS323 prokMSA_id:50735 AF363292.1 Nitrosomonas sp. str. DYS317 2.43.2.7.2.1.7784 OTU 2 seqs prokMSA_id:20247 AJ298738.1 Nitrosomonas cryotolerans Nm55 prokMSA_id:49524 AF272423.1 Nitrosomonas cryotolerans 2.43.2.7.2.1.7789 OTU 2 seqs prokMSA_id:63758 AY114347.1 anoxic marine sediment clone LD1-B6 prokMSA_id:63761 AY114346.1 anoxic marine sediment clone LD1-B37 2.43.2.7.2.1.7795 OTU 1 seq prokMSA_id:62854 AF454649.1 full-scale chloraminated drinking water system clone Nso_WWW-1 2.43.2.7.2.1.7796 OTU 2 seqs prokMSA_id:6535 AF080256.1 Nitrosospira sp. str. TYM9 prokMSA_id:44054 AF353157.1 Nitrosovibrio sp. E12 2.43.2.7.2.1.7803 OTU 1 seq prokMSA_id:71516 AF266806.1 clone 7.18.6 2.43.2.7.2.1.7805 OTU 60 seqs prokMSA_id:6503 M96396.1 Nitrosospira briensis prokMSA_id:6504 X84662.1 Nitrosospira sp. prokMSA_id:6505 AJ005543.1 Nitrosospira sp. A4 prokMSA_id:6506 AJ005544.1 Nitrosospira sp. A16 prokMSA_id:6517 L35505.1 Nitrosospira briensis prokMSA_id:6518 AJ005545.1 Nitrosospira sp. F3 prokMSA_id:6537 X84659.1 Nitrosospira sp. prokMSA_id:6538 X90820.1 Nitrosospira sp. prokMSA_id:6547 AJ012105.1 Nitrosospira sp. Ka3 prokMSA_id:6548 AJ012106.1 Nitrosospira sp. Ka4 prokMSA_id:6549 AJ012107.1 Nitrosospira sp. O4 prokMSA_id:6550 AJ012108.1 Nitrosospira sp. O13 prokMSA_id:6561 X84660.1 Nitrosospira sp. prokMSA_id:6565 AJ000344.1 Nitrosospira sp. III2 prokMSA_id:6589 M96404.1 Nitrosovibrio tenuis prokMSA_id:6591 M96397.1 Nitrosovibrio tenuis prokMSA_id:6595 Y10127.2 Nitrosospira sp. str. NpAV prokMSA_id:6599 X84657.1 Nitrosospira sp. prokMSA_id:6600 X84658.1 Nitrosospira sp. prokMSA_id:6602 M96405.1 Nitrosovibrio tenuis prokMSA_id:6604 X84656.1 Nitrosospira sp. prokMSA_id:6605 X84661.1 Nitrosospira sp. prokMSA_id:6606 AJ000345.1 Nitrosospira sp. III7 prokMSA_id:17651 AF386756.1 Nitrosospira sp. R3c5 prokMSA_id:20624 AF353156.1 Nitrosospira sp. TCH716 prokMSA_id:22110 AF386755.1 Nitrosospira sp. R5c20 prokMSA_id:22689 AF353162.1 Nitrosospira sp. GS833 prokMSA_id:23474 AJ298725.1 Nitrosospira sp. Np39-19 39-19 prokMSA_id:25430 AJ298729.1 Nitrosospira sp. Nl20 prokMSA_id:29595 AJ298746.1 Nitrosospira tenuis Nv1 prokMSA_id:31088 AJ298745.1 Nitrosospira sp. Nsp2 prokMSA_id:33825 AF414581.1 uranium mine sediment clone P3OB-51 prokMSA_id:34829 AJ298724.1 Nitrosospira sp. 24C prokMSA_id:42974 AJ298743.1 Nitrosospira sp. Nsp17 prokMSA_id:43237 AF353158.1 Nitrosospira sp. NRS527 prokMSA_id:47154 AJ298741.1 Nitrosospira briensis Nsp10 prokMSA_id:52631 AF386754.1 Nitrosospira sp. BF16c46 prokMSA_id:69065 AY123806.1 Nitrosospira sp. str. Ka3 prokMSA_id:69071 AY123801.1 Nitrosospira sp. str. Nsp12 prokMSA_id:69130 AY123790.1 Nitrosospira sp. str. Nsp62 prokMSA_id:69164 AY123809.1 Nitrosospira sp. str. III7 prokMSA_id:69429 AY123808.1 Nitrosospira sp. str. Nsp1 prokMSA_id:69463 AY123803.1 Nitrosovibrio tenuis str. Nv1 prokMSA_id:69564 AY123793.1 Nitrosospira sp. str. Nsp5 prokMSA_id:69607 AY123812.1 Nitrosospira sp. str. Nl5 prokMSA_id:69995 AJ298747.1 Nitrosospira sp. Nv6 prokMSA_id:70700 AY123800.1 Nitrosospira briensis str. Nsp10 prokMSA_id:71885 AY123787.1 Nitrosospira sp. str. Nsp40 prokMSA_id:72023 AY123796.1 Nitrosospira sp. str. L115 prokMSA_id:72194 AY123789.1 Nitrosospira sp. str. Nsp58 prokMSA_id:72266 AY123804.1 Nitrosospira sp. str. Nsp17 prokMSA_id:73045 AY123805.1 Nitrosospira sp. str. Nv6 prokMSA_id:73871 AY123802.1 Nitrosospira sp. str. Nsp2 prokMSA_id:73957 AY123788.1 Nitrosospira sp. str. Nsp41 prokMSA_id:73969 AY123813.1 Nitrosospira sp. str. Nsp65 prokMSA_id:74048 AY123791.1 Nitrosospira sp. str. Nsp57 prokMSA_id:100758 AJ621030.1 Nitrosospira sp. Is148 prokMSA_id:106240 AY631271.1 Nitrosospira sp. KAN8 prokMSA_id:110263 AY856079.1 Nitrosospira sp. str. En13 prokMSA_id:114328 AY921930.1 farm soil adjacent to silage storage bunker clone AKYG1779 2.43.2.7.2.1.7831 OTU 1 seq prokMSA_id:78042 AJ298740.1 Nitrosomonas nitrosa Nm90 2.43.2.7.2.1.7858 OTU 1 seq prokMSA_id:6603 Y10128.1 Nitrosospira sp. str. Np22-21 2.43.2.7.2.1.7865 OTU 6 seqs prokMSA_id:6609 Z69165.1 sp. (clone pH4.2A/H2) clone pH4.2A/H2 prokMSA_id:6611 U62870.1 clone prepared soil sand dune location using primers designed to prokMSA_id:6612 U62871.1 clone prepared soil sand dune location using primers designed to prokMSA_id:6613 U62872.1 clone prepared soil sand dune location using primers designed to prokMSA_id:6614 U62873.1 clone prepared soil sand dune location using primers designed to prokMSA_id:6615 U62874.1 clone prepared soil sand dune location using primers designed to 2.43.2.7.2.1.7891 OTU 1 seq prokMSA_id:40156 AF363289.1 Nitrosomonas sp. str. K1 2.43.2.7.2.1.7906 OTU 1 seq prokMSA_id:6530 AJ003775.1 clone Ws23 2.43.2.7.2.1.7930 OTU 2 seqs prokMSA_id:38503 AF272421.1 Nitrosomonas sp. NM 41 prokMSA_id:73796 AY123799.1 Nitrosomonas sp. str. Nm58 2.43.2.7.2.1.7931 OTU 4 seqs prokMSA_id:6596 L35509.1 Nitrosospira multiformis prokMSA_id:19086 AF353163.1 Nitrosospira sp. PJA1 prokMSA_id:70906 AY123807.1 Nitrosospira multiformis str. Nl13; C-71; ATCC 25196 prokMSA_id:75979 AB070984.1 Nitrosospira multiformis str. ATCC25196 2.43.2.7.2.1.7976 OTU 1 seq prokMSA_id:74278 AY123798.1 Nitrosomonas sp. str. Nm86 2.43.2.7.2.1.7989 OTU 1 seq prokMSA_id:74628 AY123811.1 Nitrosomonas sp. str. Nm59 2.43.2.7.2.1.8019 OTU 1 seq prokMSA_id:17997 AJ297419.1 clone GaN50324 2.43.2.7.2.1.8054 OTU 1 seq prokMSA_id:29614 AF417875.1 antarctic soil clone bh1.36 2.43.2.7.2.1.8145 OTU 11 seqs prokMSA_id:6642 AB000701.1 Nitrosomonas sp. GH22 prokMSA_id:6651 AF080185.1 Nitrosomonas sp. str. TK794 prokMSA_id:18945 AJ318197.1 Waste-gas biofilter clone BIvii9 prokMSA_id:21019 AB031960.1 Nitrosomonas sp. str. TK794 prokMSA_id:30994 AJ011920.1 Nitrosomonas sp. F6 prokMSA_id:33364 AJ298739.1 Nitrosomonas eutropha Nm57 prokMSA_id:33788 AY036898.1 Nitrosomonas sp. str. IWT202 prokMSA_id:44831 AF353161.1 Nitrosomonas sp. CNS326 prokMSA_id:47242 AF353155.1 Nitrosomonas sp. G1 prokMSA_id:69328 AY123795.1 Nitrosomonas eutropha str. Nm57 prokMSA_id:110209 AY856378.1 Nitrosomonas sp. str. CNS332 2.43.2.7.2.1.8149 OTU 1 seq prokMSA_id:18485 AJ422169.1 Germany:Spittelwasser River clone Spb253 2.43.2.7.3 Unclassified 9 seqs 2.43.2.7.3.1 sf_1 9 seqs 2.43.2.7.3.1.7676 OTU 9 seqs prokMSA_id:6648 AF037105.1 Nitrosococcus mobilis str. M93 prokMSA_id:6649 AF037106.1 Nitrosomonas europaea str. M103 prokMSA_id:17110 AF386748.1 Nitrosomonas sp. R3c12 prokMSA_id:26294 AJ298728.1 Nitrosococcus mobilis Nc2 prokMSA_id:32428 AF386749.1 Nitrosomonas sp. R5c47 prokMSA_id:38270 AF386750.1 Nitrosomonas sp. R5c88 prokMSA_id:58032 AB093545.1 Nitrosomonas sp. str. B2 prokMSA_id:71515 AJ431351.1 Greenland:Ikka Fjord clone prokMSA_id:78355 AJ298731.1 Nitrosomonas halophila Nm1 2.43.2.8 Procabacteriales 6 seqs 2.43.2.8.1 Procabacteriaceae 6 seqs 2.43.2.8.1.1 sf_1 6 seqs 2.43.2.8.1.1.7709 OTU 1 seq prokMSA_id:29264 AF352385.1 Acanthamoeba sp. TUMSJ-226 symbiont 2.43.2.8.1.1.8090 OTU 1 seq prokMSA_id:51448 AF352386.1 Acanthamoeba sp. TUMSJ-341 symbiont 2.43.2.8.1.1.8136 OTU 4 seqs prokMSA_id:37585 AF177427.1 Acanthamoeba sp. UWC12 symbiont prokMSA_id:43515 AF177425.1 Acanthamoeba sp. Page 23 symbiont prokMSA_id:45071 AF177424.1 Acanthamoeba sp. UWE2 symbiont prokMSA_id:52040 AF177426.1 Acanthamoeba sp. UWC6 symbiont 2.43.2.9 Rhodocyclales 200 seqs 2.43.2.9.1 Rhodocyclaceae 199 seqs 2.43.2.9.1.1 sf_1 199 seqs 2.43.2.9.1.1.7666 OTU 2 seqs prokMSA_id:67259 AF495429.1 sludge TaeJon WWTP clone F13.33 prokMSA_id:105189 AF314420.1 aerobic phosphorus-removal ecosystem clone PHOS-HE23 2.43.2.9.1.1.7668 OTU 1 seq prokMSA_id:6713 D16209.1 Rhodocyclus tenuis 2.43.2.9.1.1.7669 OTU 2 seqs prokMSA_id:6801 L15530.1 Azoarcus species prokMSA_id:6802 AF011344.1 Azoarcus sp. BH72 2.43.2.9.1.1.7670 OTU 1 seq prokMSA_id:6717 AF016690.1 Propionibacter pelophilus 2.43.2.9.1.1.7674 OTU 27 seqs prokMSA_id:6766 L33688.1 "Azoarcus denitrificians" prokMSA_id:6767 Y14701.1 Azoarcus anaerobius str. LuFres1; DSM 12081 prokMSA_id:6768 Y17284.1 strain isolate str. pCyN1 prokMSA_id:6769 AF011328.1 Azoarcus sp. str. CR23 prokMSA_id:6770 AF011329.1 Azoarcus sp. str. PH002 prokMSA_id:6771 Y13222.1 Azoarcus sp. str. 22Lin prokMSA_id:6773 X83531.1 Azoarcus sp. str. EbN1 prokMSA_id:6774 X83532.1 Azoarcus sp. str. PbN1 prokMSA_id:6776 Y11040.1 Azoarcus sp. str. M3 prokMSA_id:6777 Y11041.1 Azoarcus sp. str. M3 prokMSA_id:6778 AF123075.1 Azoarcus tolulyticus str. BL11 prokMSA_id:6781 L33689.1 "Azoarcus denitrificians" prokMSA_id:6782 L33693.1 "Azoarcus denitrificians" prokMSA_id:6784 L33692.1 "Azoarcus denitrificians" prokMSA_id:6796 AF011330.1 Azoarcus sp. str. FL05 prokMSA_id:6805 U82665.1 Azoarcus tolulyticus str. XQ3 prokMSA_id:6809 L33691.1 "Azoarcus denitrificians" prokMSA_id:39189 AJ315676.1 Azoarcus buckelii str. U120 prokMSA_id:49535 AF395431.1 acetate-enriched initiated inoculation digester sludge which had been used to treat cassava starch wastewater supplemented with 0.05% acetic acid clone Eub No. 21 prokMSA_id:59917 AY133073.1 TCE-contaminated site clone ccs250 prokMSA_id:59923 AY133068.1 TCE-contaminated site clone ccs2133 prokMSA_id:66610 AF331975.1 Azoarcus sp. str. HxN1 prokMSA_id:108423 AY570565.1 -temperature biodegraded Canadian oil reservoir clone PL-33B3 prokMSA_id:108495 AY570619.1 -temperature biodegraded Canadian oil reservoir clone PL-33B11 prokMSA_id:108498 AY570620.1 -temperature biodegraded Canadian oil reservoir clone PL-33B2 prokMSA_id:109232 CR555306.1 Azoarcus sp. str. EbN1 prokMSA_id:111865 NC_006513.1 Azoarcus sp. str. EbN1 2.43.2.9.1.1.7691 OTU 1 seq prokMSA_id:6720 AJ009484.1 chlorobenzene-degrading consortium clone SJA-109 2.43.2.9.1.1.7692 OTU 1 seq prokMSA_id:6721 Y17601.1 Propionivibrio dicarboxylicus 2.43.2.9.1.1.7711 OTU 1 seq prokMSA_id:19644 AF407390.1 MCB-contaminated groundwater-treating reactor clone Ra9C4 2.43.2.9.1.1.7715 OTU 1 seq prokMSA_id:19603 AF204250.1 P+ sludge clone SBR1021 2.43.2.9.1.1.7717 OTU 2 seqs prokMSA_id:6712 D16210.1 Rhodocyclus tenuis prokMSA_id:6718 D16208.1 Rhodocyclus tenuis 2.43.2.9.1.1.7724 OTU 1 seq prokMSA_id:6783 AF011343.1 Azoarcus communis str. SWub3 2.43.2.9.1.1.7726 OTU 1 seq prokMSA_id:6735 AJ009455.1 anaerobic TCB-transforming consortium clone SJA-21 2.43.2.9.1.1.7734 OTU 1 seq prokMSA_id:6699 AJ009452.1 chlorobenzene-degrading consortium clone SJA-10 2.43.2.9.1.1.7751 OTU 1 seq prokMSA_id:6807 L33690.1 "Azoarcus denitrificians" 2.43.2.9.1.1.7753 OTU 4 seqs prokMSA_id:6731 D14254.1 Zoogloea ramigera prokMSA_id:6732 D14257.1 Zoogloea ramigera prokMSA_id:6733 X74913.1 Zoogloea ramigera prokMSA_id:50725 AB010611.1 sludge clone ASB026 2.43.2.9.1.1.7758 OTU 2 seqs prokMSA_id:6792 AF011345.1 Azoarcus indigens str. VB32 prokMSA_id:6806 L15531.1 Azoarcus indigens 2.43.2.9.1.1.7759 OTU 1 seq prokMSA_id:6793 U46748.1 -like hot spring microbial mat. str. OS isolate ac-16 OS-ac-16 2.43.2.9.1.1.7760 OTU 1 seq prokMSA_id:6794 AF026985.1 hot spring clone OPB37 2.43.2.9.1.1.7762 OTU 1 seq prokMSA_id:50273 AF150698.1 Elbe River snow isolate Iso18 Iso18_1411 2.43.2.9.1.1.7772 OTU 1 seq prokMSA_id:29482 AY007722.1 Quadricoccus australiensis str. Ben 117; NCIMB 13738; CIP 107055 2.43.2.9.1.1.7779 OTU 1 seq prokMSA_id:70708 AF407205.1 clone GIF16 2.43.2.9.1.1.7787 OTU 1 seq prokMSA_id:46568 AB071327.1 clone:pHAuB-J clone pHAuB-J 2.43.2.9.1.1.7800 OTU 1 seq prokMSA_id:36578 AY013692.1 sample taken upstream landfill clone BVC77 landfill 2.43.2.9.1.1.7809 OTU 9 seqs prokMSA_id:18572 AF234737.1 sludge clone H13 prokMSA_id:19927 AF234697.1 sludge clone H22 prokMSA_id:22275 AF234726.1 sludge clone A16 prokMSA_id:25035 AF234738.1 sludge clone S21 prokMSA_id:34086 AF314418.1 aerobic phosphorus-removal ecosystem clone PHOS-HC20 prokMSA_id:37845 AF234704.1 sludge clone H40 prokMSA_id:40129 AF234693.1 sludge clone H10 prokMSA_id:45043 AF234722.1 sludge clone H27 prokMSA_id:114380 AB200297.1 activated sludge lab-scale anaerobic aerobic sequencing batch reactor(Run8) fed with aspartate clone UTFS-OF08-d36-08 2.43.2.9.1.1.7813 OTU 1 seq prokMSA_id:56109 AF467301.1 Xanthomonas sp. clone 88_5_1 2.43.2.9.1.1.7815 OTU 1 seq prokMSA_id:42293 AF229867.1 Thauera aromatica str. 4FB1 2.43.2.9.1.1.7817 OTU 1 seq prokMSA_id:59932 AY133064.1 TCE-contaminated site clone ccs265 2.43.2.9.1.1.7824 OTU 1 seq prokMSA_id:77638 AB089101.1 termite gut homogenate clone Rs-B77 proteobacterium 2.43.2.9.1.1.7857 OTU 6 seqs prokMSA_id:6716 AF170350.1 Dechlorosoma sp. str. Iso1 prokMSA_id:6722 AF170348.1 Azospira oryzae str. PS prokMSA_id:6723 AF170349.1 Dechlorosoma sp. str. SDGM prokMSA_id:6724 AF170351.1 Dechlorosoma sp. str. Iso2 prokMSA_id:59899 AY133096.1 TCE-contaminated site clone ccslm36 prokMSA_id:60759 AY126453.1 Dechlorosoma sp. PCC 2.43.2.9.1.1.7875 OTU 3 seqs prokMSA_id:32087 AF255641.1 EBPR sludge clone Ebpr15 prokMSA_id:36331 AF255631.1 EBPR sludge clone Ebpr16 prokMSA_id:45179 AF245349.1 EBPR sludge clone SA34 2.43.2.9.1.1.7880 OTU 3 seqs prokMSA_id:6750 AJ005817.1 Thauera terpenica str. 58Eu prokMSA_id:6752 AJ005818.1 Thauera terpenica str. 21Mol prokMSA_id:6753 Y17285.1 strain isolate str. pCyN2 2.43.2.9.1.1.7907 OTU 22 seqs prokMSA_id:6748 AB021377.1 Pseudomonas butanovora str. IAM 12574T prokMSA_id:6755 X64373.1 str AX39 prokMSA_id:6756 X68491.1 Thauera selenatis prokMSA_id:6757 X77118.1 "Thauera phenolica" prokMSA_id:6758 AF110005.1 Thauera sp. str. mz1t prokMSA_id:6759 AF123264.1 Thauera chlorobenzoica str. 3CB-1 prokMSA_id:6760 X83533.1 Azoarcus sp. str. mXyN1 prokMSA_id:6761 Y17590.1 Thauera mechernichensis str. TL1 prokMSA_id:6763 U95176.1 Thauera aromatica str. T1 prokMSA_id:22130 AJ315680.1 Thauera aromatica str. LG356 prokMSA_id:23705 AF229881.1 Thauera aromatica str. 3CB2 prokMSA_id:36677 AF229887.1 Thauera aromatica str. 3BB1 prokMSA_id:38171 AF204254.1 P+ sludge clone SBR1022 prokMSA_id:44747 AJ315681.1 Thauera aromatica str. S100 prokMSA_id:58572 AJ505850.1 Thauera sp. str. PIV-1 prokMSA_id:70860 AF170281.1 Thauera aromatica str. PN-1 prokMSA_id:102758 AY212635.1 water 20 m upstream manure clone 183up prokMSA_id:108302 AY770935.1 oil well Dagang oilfield clone O3 prokMSA_id:108422 AY570563.1 -temperature biodegraded Canadian oil reservoir clone PL-2B12 prokMSA_id:108499 AY570623.1 -temperature biodegraded Canadian oil reservoir clone PL-34B4 prokMSA_id:108565 AY570693.1 Thauera sp. Al7 prokMSA_id:111927 AY548757.1 Thauera sp. str. Cin34 2.43.2.9.1.1.7910 OTU 7 seqs prokMSA_id:6714 AF011347.1 Azospira oryzae str. 6a3 prokMSA_id:6715 AF011351.1 Azospira oryzae str. BS2-3 prokMSA_id:6719 AJ009466.1 chlorobenzene-degrading consortium clone SJA-52 prokMSA_id:35442 AF323490.1 Dechlorosoma sp. str. PDX prokMSA_id:35520 AF323491.1 Dechlorosoma sp. str. KJ prokMSA_id:76627 AJ534664.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN2 proteobacterium prokMSA_id:77054 AJ534663.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN6 proteobacterium 2.43.2.9.1.1.7915 OTU 1 seq prokMSA_id:27286 AJ306683.1 Sterolibacterium denitrificans str. Chol-1S 2.43.2.9.1.1.7925 OTU 5 seqs prokMSA_id:6762 Y17591.1 Thauera selenatis str. ATCC 55363T prokMSA_id:25264 AJ315678.1 Thauera phenylacetica str. B4P prokMSA_id:36782 AF204253.1 P+ sludge clone SBR1011 prokMSA_id:40990 AJ315677.1 Thauera aminoaromatica str. S2 prokMSA_id:63593 AB066262.1 Thauera sp. str. DNT-1 2.43.2.9.1.1.7938 OTU 1 seq prokMSA_id:54073 AB062831.1 termite gut homogenate clone BCf6-08 2.43.2.9.1.1.7948 OTU 14 seqs prokMSA_id:6775 L33694.1 "Azoarcus denitrificians" prokMSA_id:6779 AF123076.1 Azoarcus toluclasticus str. MF7 prokMSA_id:6780 AF123077.1 Azoarcus toluclasticus str. MF63 prokMSA_id:6785 X77679.1 "Azoarcus denitrificans" prokMSA_id:6791 X83534.1 Azoarcus sp. str. ToN1 prokMSA_id:6795 U44853.1 Azoarcus sp. prokMSA_id:6797 AF129465.1 Azoarcus sp. str. T prokMSA_id:6804 L33687.1 "Azoarcus denitrificians" prokMSA_id:30791 AF229876.1 Azoarcus tolulyticus str. 4FB10 prokMSA_id:35148 AF229861.1 Azoarcus tolulyticus str. 2FB6 prokMSA_id:44225 AB033745.1 Azoarcus sp. str. CC-11 prokMSA_id:51917 AF229857.1 Azoarcus tolulyticus str. 2FB2 prokMSA_id:64547 AF515816.2 Azoarcus sp. str. CIB prokMSA_id:66959 AF482683.1 Azoarcus sp. str. HA 2.43.2.9.1.1.7951 OTU 2 seqs prokMSA_id:59335 AF502233.1 EBPR sludge lab scale clone HP1A03 prokMSA_id:73258 AF527582.1 EBPR sludge lab scale clone LPB19 2.43.2.9.1.1.7956 OTU 1 seq prokMSA_id:6743 U22534.1 Zoogloea resiniphila str. DhA-35 2.43.2.9.1.1.7958 OTU 1 seq prokMSA_id:6747 AJ005816.1 Thauera linaloolentis str. 47Lol 2.43.2.9.1.1.7962 OTU 1 seq prokMSA_id:6749 Y09967.1 denitrifying isolate str. 72Chol 2.43.2.9.1.1.7967 OTU 4 seqs prokMSA_id:6673 AF011346.1 Azovibrio restrictus str. S5b2 prokMSA_id:26304 AF158720.1 chloroethene dechlorinating enrichment clone A42 prokMSA_id:32718 AF158721.1 chloroethene dechlorinating enrichment clone A49 prokMSA_id:37979 AF158715.1 chloroethene dechlorinating enrichment clone PM8-1 2.43.2.9.1.1.7972 OTU 1 seq prokMSA_id:67252 AF495436.1 sludge TaeJon WWTP clone F13.40 2.43.2.9.1.1.7973 OTU 1 seq prokMSA_id:6754 AJ007007.1 Azoarcus sp. LU1 2.43.2.9.1.1.7980 OTU 3 seqs prokMSA_id:31185 AF204243.1 P+ sludge clone GC24 prokMSA_id:32687 AF204252.1 P+ sludge clone SBR1001 prokMSA_id:48813 AF204251.1 P- sludge clone SBR2080 2.43.2.9.1.1.7996 OTU 1 seq prokMSA_id:43046 AF204242.1 P+ sludge clone GC152 2.43.2.9.1.1.8000 OTU 1 seq prokMSA_id:6772 U58019.1 Thiobacillus aquaesulis 2.43.2.9.1.1.8001 OTU 2 seqs prokMSA_id:65363 AF450468.1 full-scale aerated-anoxic wastewater treatment plant clone Orbal D41 prokMSA_id:74718 AF450476.1 full-scale aerated-anoxic wastewater treatment plant clone Orbal D54 2.43.2.9.1.1.8026 OTU 1 seq prokMSA_id:6738 AJ011506.1 Zoogloea resiniphila str. DhA-35 2.43.2.9.1.1.8052 OTU 31 seqs prokMSA_id:6676 AF050526.1 contaminated aquifer clone WCHA1-52 prokMSA_id:6696 AF047462.1 Dechlorimonas agitatus prokMSA_id:6700 AF170354.1 Dechloromonas sp. CL prokMSA_id:6701 AF170355.1 Dechloromonas sp. NM prokMSA_id:6702 AF170356.1 Dechloromonas sp. SIUL prokMSA_id:6703 AF170357.1 Dechloromonas sp. str. MissR prokMSA_id:25359 AF323489.1 Dechloromonas sp. JM prokMSA_id:25770 AY032611.1 Dechloromonas sp. JJ prokMSA_id:29770 AY032610.1 Dechloromonas aromatica prokMSA_id:30433 AF288775.1 Dechloromonas sp. str. CL24 prokMSA_id:39167 AJ422172.2 Germany:Spittelwasser River clone Spb272 prokMSA_id:41487 AF444791.1 perchlorate-reducing biologically active carbon filter isolate str. MLC33 MLC33 prokMSA_id:50481 AF204246.1 EBPR sludge clone SBRH147 prokMSA_id:59909 AY133087.1 TCE-contaminated site clone ccslm218 prokMSA_id:59918 AY133075.1 TCE-contaminated site clone ccs296 prokMSA_id:59921 AY133076.1 TCE-contaminated site clone ccs272 prokMSA_id:59931 AY133067.1 TCE-contaminated site clone ccs2105 prokMSA_id:59933 AY133066.1 TCE-contaminated site clone ccs203 prokMSA_id:60760 AY126452.1 Dechloromonas sp. PC1 prokMSA_id:61806 AF529359.1 TCE-contaminated site isolate str. AC1 prokMSA_id:61824 AF529339.1 PCE-contaminated site clone CLi61 prokMSA_id:62036 AF523324.1 sediment at inactive uranium mine clone P4-4 prokMSA_id:62388 AF529131.1 trichloroethene-contaminated site clone FTLpost11 proteobacterium prokMSA_id:65405 AY064191.1 prokMSA_id:69212 AY124797.1 Dechloromonas sp. str. LT-1 prokMSA_id:75126 AJ318917.1 Dechloromonas sp. SIUL prokMSA_id:76034 AY159181.1 microbial biofilm with membrane-based water purification process clone RO_clone_110 prokMSA_id:77750 AJ508151.1 water clone J2_3 prokMSA_id:82517 AY265878.1 perchlorate-reducing PMC prokMSA_id:83019 AY265876.1 perchlorate-reducing RC1 prokMSA_id:83320 AY265879.1 perchlorate-reducing EAB2 2.43.2.9.1.1.8073 OTU 1 seq prokMSA_id:17553 AF280846.1 bioreactor clone mle1-7 2.43.2.9.1.1.8077 OTU 2 seqs prokMSA_id:74893 AJ519656.1 uranium mill tailings soil sample clone GuBH2-AG-43 proteobacterium prokMSA_id:76131 AJ519655.1 uranium mill tailings soil sample clone GuBH2-AD-29 proteobacterium 2.43.2.9.1.1.8080 OTU 1 seq prokMSA_id:17475 AY013696.1 sample taken upstream landfill clone BVC47 landfill 2.43.2.9.1.1.8122 OTU 1 seq prokMSA_id:42580 AJ307983.1 Propionivibrio limicola 2.43.2.9.1.1.8127 OTU 4 seqs prokMSA_id:70359 AJ505854.1 Zoogloea resiniphila str. PIV-3C2y prokMSA_id:70483 AJ505851.1 Zoogloea resiniphila str. PIV-3A2w = DSM 14766 prokMSA_id:72759 AJ505853.1 Zoogloea resiniphila str. PIV-3C2w prokMSA_id:73489 AJ505852.1 Zoogloea resiniphila str. PIV-3A2y 2.43.2.9.1.1.8130 OTU 6 seqs prokMSA_id:6786 AF072918.1 nitrifying/denitrifying industrial activated sludge clone S3 S3 prokMSA_id:6787 AF072919.1 nitrifying/denitrifying industrial activated sludge clone H25 H25 prokMSA_id:6789 AF072925.1 nitrifying/denitrifying industrial activated sludge clone A33 A33 prokMSA_id:6799 AF072921.1 nitrifying/denitrifying industrial activated sludge clone S23 S23 prokMSA_id:47981 AF234732.1 sludge clone H35 prokMSA_id:49117 AF234762.1 sludge clone S10 2.43.2.9.1.1.8131 OTU 1 seq prokMSA_id:66107 AB074943.1 clone:KU34 clone KU34 2.43.2.9.1.1.8142 OTU 1 seq prokMSA_id:18623 AF229868.1 Thauera aromatica str. 4FB2 2.43.2.9.1.1.8156 OTU 1 seq prokMSA_id:71611 AY098637.2 industrial-phenol-degrading community clone MM1 sp. 2.43.2.9.2 Unclassified 1 seq 2.43.2.9.2.1 sf_3 1 seq 2.43.2.9.2.1.8109 OTU 1 seq prokMSA_id:25562 AF371865.1 phylotype OTU-294 swine intestine clone p-2552-9F5 2.43.3 Deltaproteobacteria 1028 seqs 2.43.3.1 AMD clone group 6 seqs 2.43.3.1.1 Unclassified 6 seqs 2.43.3.1.1.1 sf_1 6 seqs 2.43.3.1.1.1.10084 OTU 2 seqs prokMSA_id:56683 AF543496.1 acid mine drainage clone AS6 prokMSA_id:58310 AF543506.1 acid mine drainage clone BA9 2.43.3.1.1.1.3084 OTU 1 seq prokMSA_id:55916 AF523884.1 coal effluent wetland clone RCP216 2.43.3.1.1.1.6830 OTU 1 seq prokMSA_id:63330 AF523882.1 coal effluent wetland clone RCP124 2.43.3.1.1.1.9678 OTU 1 seq prokMSA_id:63331 AF523883.1 coal effluent wetland clone RCP185 2.43.3.1.1.1.9945 OTU 1 seq prokMSA_id:48110 AF225446.1 acid mine drainage clone BA18 2.43.3.10 Myxococcales 164 seqs 2.43.3.10.1 Anaeromyxobacter 16 seqs 2.43.3.10.1.1 sf_1 16 seqs 2.43.3.10.1.1.10088 OTU 16 seqs prokMSA_id:24157 AF382397.1 Anaeromyxobacter dehalogenans str. 2CP-5 prokMSA_id:27824 AF382398.1 Anaeromyxobacter dehalogenans str. 2CP-2 prokMSA_id:31177 AF382400.1 Anaeromyxobacter dehalogenans str. 2CP-3 prokMSA_id:45051 AF382399.1 Anaeromyxobacter dehalogenans prokMSA_id:47993 AF382396.1 Anaeromyxobacter dehalogenans str. 2CP-1; ATCC BAA-258 prokMSA_id:63253 AF523970.1 forested wetland clone FW35 prokMSA_id:66954 AF482687.1 Myxobacterium isolate str. KC prokMSA_id:82538 AJ504434.1 roots flooded rice microcosm clone 90D-25 prokMSA_id:82595 AJ504428.1 roots flooded rice microcosm clone 45D-51 prokMSA_id:83142 AJ504431.1 roots flooded rice microcosm clone 45D-27 prokMSA_id:83217 AJ504432.1 roots flooded rice microcosm clone 90D-12 prokMSA_id:83775 AJ504433.1 roots flooded rice microcosm clone 90D-18 prokMSA_id:83783 AJ504435.1 roots flooded rice microcosm clone 90D-47 prokMSA_id:85245 AJ504430.1 roots flooded rice microcosm clone 45D-26 prokMSA_id:85991 AJ504429.1 roots flooded rice microcosm clone 45D-76 prokMSA_id:86437 AJ504436.1 roots flooded rice microcosm clone 90D-55 2.43.3.10.2 Haliangiaceae 1 seq 2.43.3.10.2.1 sf_1 1 seq 2.43.3.10.2.1.954 OTU 1 seq prokMSA_id:11277 AF142837.1 clone BURTON-17 2.43.3.10.3 Myxococcaceae 85 seqs 2.43.3.10.3.1 sf_1 85 seqs 2.43.3.10.3.1.10066 OTU 18 seqs prokMSA_id:10594 M34114.1 Myxococcus xanthus prokMSA_id:10600 AJ233909.1 Angiococcus disciformis str. d1 prokMSA_id:10601 AJ233916.1 Myxococcus flavescens str. Mx fl1 prokMSA_id:10603 AJ233918.1 Myxococcus fulvus str. Mx f421 prokMSA_id:10604 AJ233919.1 Myxococcus fulvus str. Mx f428 prokMSA_id:10605 AJ233920.1 Myxococcus macrosporus str. Cc m7 prokMSA_id:10606 AJ233921.1 Myxococcus macrosporus str. Cc m8 prokMSA_id:10610 AJ233925.1 Myxococcus virescens str. Mx v2 prokMSA_id:10611 AJ233926.1 Myxococcus virescens str. Mx v76 prokMSA_id:10612 AJ233927.1 Myxococcus virescens str. Mx v1 prokMSA_id:10613 AJ233928.1 Myxococcus virescens str. Mx v144 prokMSA_id:10614 AJ233929.1 Myxococcus xanthus str. DSM 435 (Mx x1) prokMSA_id:10615 AJ233930.1 Myxococcus xanthus prokMSA_id:20918 AY032879.1 Myxococcus fulvus str. 128-7 prokMSA_id:21317 AY072740.1 Myxococcus macrosporus str. 125-10-1 prokMSA_id:34703 AF466191.1 Myxococcus fulvus str. 125-1 prokMSA_id:47762 AF336801.1 Myxococcus fulvus str. HW-1 prokMSA_id:66414 AF506736.1 Myxococcus xanthus str. BD86 2.43.3.10.3.1.10080 OTU 5 seqs prokMSA_id:10581 AJ233933.1 Stigmatella erecta str. Pd e3 prokMSA_id:10582 AJ233935.1 Stigmatella aurantiaca str. Sg a1 prokMSA_id:10583 AJ233936.1 Stigmatella aurantiaca str. Sg a15 prokMSA_id:10584 AJ233937.1 Stigmatella aurantiaca str. Sg a28 prokMSA_id:10585 AJ233934.1 Stigmatella erecta str. Pd e19 2.43.3.10.3.1.10186 OTU 1 seq prokMSA_id:10580 M94281.1 Stigmatella aurantiaca 2.43.3.10.3.1.10232 OTU 1 seq prokMSA_id:10599 U68672.1 Amazon clone P45 2.43.3.10.3.1.10313 OTU 1 seq prokMSA_id:21534 AF414588.1 clone P3OB-42 2.43.3.10.3.1.10358 OTU 59 seqs prokMSA_id:10586 AJ233949.1 Myxococcales str. NOCB-2 prokMSA_id:10587 AJ233950.1 Myxococcales str. NOCB-4 prokMSA_id:10589 AJ233931.1 Corallococcus exiguus str. Cc e12b prokMSA_id:10590 AJ233932.1 Corallococcus exiguus str. Cc e100 prokMSA_id:10591 AJ233914.1 Myxococcus coralloides str. Cc c494 prokMSA_id:10592 AJ233915.1 Myxococcus coralloides str. Cc c806 prokMSA_id:10602 AJ233917.1 Myxococcus fulvus str. Mx f2 prokMSA_id:10607 AJ233922.1 Myxococcus stipitatus str. Mx s33 prokMSA_id:10608 AJ233923.1 Myxococcus stipitatus str. Mx s42 prokMSA_id:10609 AJ233924.1 Myxococcus stipitatus str. Mx s52 prokMSA_id:10617 AJ233897.1 Cystobacter fuscus str. Cb f6 prokMSA_id:10618 AJ233898.1 Cystobacter fuscus str. Cb f10 prokMSA_id:10619 AJ233899.1 Cystobacter fuscus str. Cb f39 prokMSA_id:10620 AJ233901.1 Cystobacter ferrugineus str. Cb fe18 prokMSA_id:10621 AJ233902.1 Cystobacter ferrugineus str. Cb fe27 prokMSA_id:10622 AJ233907.1 Melittangium alboraceum str. Me b7 prokMSA_id:10623 AJ233908.1 Melittangium boletus str. Me b8 prokMSA_id:10625 M94273.1 Archangium gephyra prokMSA_id:10626 AJ233910.1 Angiococcus disciformis str. d4 prokMSA_id:10627 AJ233911.1 Angiococcus disciformis str. d6 prokMSA_id:10628 AJ233912.1 Archangium gephyra str. Ar g1 prokMSA_id:10629 AJ233913.1 Archangium gephyra str. Ar g2 prokMSA_id:10630 AJ233900.1 Cystobacter ferrugineus str. Cb fe13 prokMSA_id:10631 AJ233903.1 Cystobacter minus str. Cb m2 prokMSA_id:10632 AJ233904.1 Cystobacter minus str. Cb m6 prokMSA_id:10633 AJ233905.1 Cystobacter violaceus str. Cb vi29 prokMSA_id:10634 AJ233906.1 Cystobacter violaceus str. Cb vi34 prokMSA_id:66412 AF506738.1 Myxococcus stipitatus str. YN78 prokMSA_id:66415 AF506735.1 Cystobacter sp. str. BD54 prokMSA_id:100686 AJ811588.1 Corallococcus coralloides str. DSM 2259 prokMSA_id:100690 AJ811600.1 Corallococcus coralloides str. DSM 51425 prokMSA_id:100843 AJ811589.1 Corallococcus coralloides str. DSM 51359 prokMSA_id:100844 AJ811601.1 Corallococcus coralloides str. DSM 51492 prokMSA_id:101005 AJ811602.1 Corallococcus coralloides str. DSM 51558 prokMSA_id:101172 AJ811603.1 Corallococcus coralloides str. DSM 52499 prokMSA_id:101327 AJ811604.1 Corallococcus coralloides str. DSM 52502 prokMSA_id:101497 AJ811605.1 Corallococcus coralloides str. DSM 52503 prokMSA_id:101668 AJ811606.1 Corallococcus coralloides str. DSM 51298 prokMSA_id:101933 AJ811620.1 Corallococcus coralloides str. DSM 51615 prokMSA_id:101985 AJ811608.1 Corallococcus coralloides str. DSM 51620 prokMSA_id:104528 AJ811590.1 Corallococcus coralloides str. DSM 51379 prokMSA_id:104682 AJ811591.1 Corallococcus coralloides str. DSM 51427 prokMSA_id:104832 AJ811592.1 Corallococcus coralloides str. DSM 51547 prokMSA_id:104894 AY724798.1 Myxococcus xanthus str. UCDaV5 prokMSA_id:104972 AJ811593.1 Corallococcus coralloides str. DSM 51548 prokMSA_id:105122 AJ811594.1 Corallococcus coralloides str. DSM 51557 prokMSA_id:105288 AJ811595.1 Corallococcus coralloides str. DSM 51651 prokMSA_id:105439 AJ811596.1 Corallococcus coralloides str. DSM 51682 prokMSA_id:105590 AJ811597.1 Corallococcus coralloides str. DSM 52497 prokMSA_id:105743 AJ811598.1 Corallococcus exiguus str. DSM 14696 prokMSA_id:105746 AJ811610.1 Corallococcus coralloides str. DSM 51639 prokMSA_id:105895 AJ811599.1 Corallococcus coralloides str. DSM 51307 prokMSA_id:105898 AJ811611.1 Corallococcus coralloides str. DSM 51643 prokMSA_id:106360 AJ811614.1 Corallococcus coralloides str. DSM 51301 prokMSA_id:106528 AJ811615.1 Corallococcus coralloides str. DSM 51408 prokMSA_id:106682 AJ811616.1 Corallococcus coralloides str. DSM 51433 prokMSA_id:106835 AJ811617.1 Corallococcus coralloides str. DSM 51434 prokMSA_id:106978 AJ811618.1 Corallococcus coralloides str. DSM 51435 prokMSA_id:107136 AJ811619.1 Corallococcus coralloides str. DSM 51461 2.43.3.10.4 Nannocystaceae 1 seq 2.43.3.10.4.1 sf_1 1 seq 2.43.3.10.4.1.10119 OTU 1 seq prokMSA_id:10650 AJ233946.1 Nannocystis exedens str. Na e1 2.43.3.10.5 Polyangiaceae 58 seqs 2.43.3.10.5.1 sf_3 55 seqs 2.43.3.10.5.1.10065 OTU 11 seqs prokMSA_id:17113 AY039304.1 Polyangium cellulosum str. So9733-1 prokMSA_id:22473 AF467674.1 Polyangium cellulosum str. So9857 prokMSA_id:29731 AY079453.1 Polyangium cellulosum str. So0089-1 prokMSA_id:39056 AF387628.1 Polyangium cellulosum str. 87-5 prokMSA_id:41480 AF467673.1 Polyangium cellulosum str. So9882-1 prokMSA_id:45207 AY032880.1 Polyangium cellulosum str. So9721-1 prokMSA_id:46866 AF467672.1 Polyangium cellulosum str. So9881 prokMSA_id:47189 AF467675.1 Polyangium cellulosum str. So9735-22 prokMSA_id:72161 AJ316015.1 Polyangium cellulosum str. So ce56 prokMSA_id:82906 AY252114.1 Polyangium cellulosum str. So02007-3 prokMSA_id:86196 AY252113.1 Polyangium cellulosum str. So9734 2.43.3.10.5.1.10074 OTU 3 seqs prokMSA_id:38791 AF031629.1 clone prokMSA_id:66013 AF382826.1 bovine thymus clone EBA3 prokMSA_id:102964 AF503916.1 bovine fetal thymus clone EBA 2.43.3.10.5.1.10082 OTU 1 seq prokMSA_id:76933 AJ518792.1 uranium mining waste pile clone JG37-AG-33 proteobacterium 2.43.3.10.5.1.10086 OTU 3 seqs prokMSA_id:10653 AB016469.1 Myxobacterium isolate str. SHI-1 prokMSA_id:42987 AY038451.1 clone CD3H8 prokMSA_id:66994 AB083432.1 Plesiocystis pacifica str. SIR-1 2.43.3.10.5.1.10096 OTU 1 seq prokMSA_id:10641 AJ233940.1 Chondromyces pediculatus str. Cm p17 2.43.3.10.5.1.10099 OTU 1 seq prokMSA_id:10645 AJ233943.1 Polyangium thaxteri str. Pl t3 2.43.3.10.5.1.10104 OTU 1 seq prokMSA_id:26373 AF387627.1 Polyangium cellulosum str. 9741 2.43.3.10.5.1.10120 OTU 1 seq prokMSA_id:10652 AJ233944.1 Polyangium vitellinum str. Pl vt1 2.43.3.10.5.1.10122 OTU 1 seq prokMSA_id:10654 AB016470.1 Haliangium ochraceum str. SMP-2 2.43.3.10.5.1.10124 OTU 1 seq prokMSA_id:10657 AJ233948.1 Myxococcales str. NOSO-1 2.43.3.10.5.1.10193 OTU 2 seqs prokMSA_id:26165 AF424255.1 clone MERTZ_21CM_284 prokMSA_id:78239 AJ535224.1 marine sediment above hydrate ridge clone Hyd24-27 proteobacterium 2.43.3.10.5.1.10247 OTU 1 seq prokMSA_id:79211 AY187312.1 drinking-water biofilm clone csbio160363 2.43.3.10.5.1.10249 OTU 1 seq prokMSA_id:75311 AJ534629.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-168 proteobacterium 2.43.3.10.5.1.10286 OTU 1 seq prokMSA_id:37962 AJ252704.1 Rhizosphere soil RSC-II-106 () clone RSC-II-106 2.43.3.10.5.1.10298 OTU 1 seq prokMSA_id:79653 AY193162.1 marine tidal mat clone BTM36 2.43.3.10.5.1.10309 OTU 2 seqs prokMSA_id:10649 AJ233945.1 Nannocystis aggregans str. Na a1 prokMSA_id:10651 AJ233947.1 Nannocystis exedens str. Na e571 2.43.3.10.5.1.10345 OTU 1 seq prokMSA_id:72214 AF354167.1 marine methane seep clone 1454 2.43.3.10.5.1.10353 OTU 1 seq prokMSA_id:30991 AF234747.1 sludge clone A9 2.43.3.10.5.1.10360 OTU 2 seqs prokMSA_id:63252 AF523971.1 forested wetland clone FW46 prokMSA_id:75196 AJ534630.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-205 proteobacterium 2.43.3.10.5.1.10369 OTU 6 seqs prokMSA_id:10639 AJ233938.1 Chondromyces apiculatus str. Cm a14 prokMSA_id:10640 AJ233939.1 Chondromyces lanuginosus str. Sy t2 prokMSA_id:10642 AJ233941.1 Chondromyces robustus str. Cm a22 prokMSA_id:10643 AJ233942.1 Chondromyces robustus str. Cm a13 prokMSA_id:24751 AJ316014.1 Polyangium cellulosum prokMSA_id:33812 AF387629.1 Polyangium cellulosum str. So ce26 2.43.3.10.5.1.9671 OTU 1 seq prokMSA_id:67784 AF420357.1 hydrothermal sediment clone AF420357 2.43.3.10.5.1.9716 OTU 2 seqs prokMSA_id:84947 AB097591.1 Enhygromyxa salina str. SMK-1-3 prokMSA_id:85080 AB097590.1 Enhygromyxa salina str. SHK-1 2.43.3.10.5.1.9725 OTU 1 seq prokMSA_id:48487 AJ318168.1 Waste-gas biofilter clone BIrii41 2.43.3.10.5.1.9735 OTU 1 seq prokMSA_id:77008 AJ518790.1 uranium mining waste pile clone JG37-AG-15 proteobacterium 2.43.3.10.5.1.9755 OTU 1 seq prokMSA_id:79558 AF382126.1 bacterioplankton clone ZA3704c 2.43.3.10.5.1.9767 OTU 1 seq prokMSA_id:10682 AJ241020.1 Norway:(Svalbard)Hornsund clone Sva0679 2.43.3.10.5.1.9808 OTU 1 seq prokMSA_id:69926 AY038725.1 epilithon clone TAF-A127 2.43.3.10.5.1.9861 OTU 1 seq prokMSA_id:71817 AF280858.1 bioreactor clone mle1-29 2.43.3.10.5.1.9874 OTU 1 seq prokMSA_id:76214 AJ532714.1 uranium mining waste pile clone JG34-KF-243 proteobacterium 2.43.3.10.5.1.9900 OTU 1 seq prokMSA_id:45556 AF280857.1 bioreactor clone mle1-27 2.43.3.10.5.1.9912 OTU 1 seq prokMSA_id:75552 AJ532713.1 uranium mining waste pile clone JG34-KF-14 proteobacterium 2.43.3.10.5.1.9970 OTU 1 seq prokMSA_id:70239 AF421890.1 Polyangium cellulosum str. NUST_6 2.43.3.10.5.2 sf_4 3 seqs 2.43.3.10.5.2.9733 OTU 1 seq prokMSA_id:79548 AF382143.1 bacterioplankton clone ZA3735c 2.43.3.10.5.2.9871 OTU 2 seqs prokMSA_id:23990 AY048892.1 rhizosphere clone Q3-6C17 prokMSA_id:75871 AJ518799.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-118 2.43.3.10.6 Unclassified 3 seqs 2.43.3.10.6.1 sf_1 3 seqs 2.43.3.10.6.1.10092 OTU 1 seq prokMSA_id:65455 AY102330.1 heavy metal-contaminated soil clone a13134 2.43.3.10.6.1.10230 OTU 1 seq prokMSA_id:10596 AJ009449.1 anaerobic TCB-transforming consortium clone SJA-5 2.43.3.10.6.1.10259 OTU 1 seq prokMSA_id:66526 AY100555.1 clone cvf63054 2.43.3.11 Syntrophobacterales 85 seqs 2.43.3.11.1 Syntrophaceae 40 seqs 2.43.3.11.1.1 sf_3 40 seqs 2.43.3.11.1.1.10025 OTU 1 seq prokMSA_id:10859 AJ133796.1 Syntrophus sp 2.43.3.11.1.1.10033 OTU 1 seq prokMSA_id:10856 AF146263.1 clone SCALE-11 2.43.3.11.1.1.10034 OTU 1 seq prokMSA_id:10858 AJ133795.1 Syntrophus sp 2.43.3.11.1.1.10050 OTU 1 seq prokMSA_id:66927 AJ306773.1 DCP-dechlorinating consortium clone SHA-51 2.43.3.11.1.1.10067 OTU 13 seqs prokMSA_id:18138 AF323776.2 benzoate-degrading consortium clone BA053 prokMSA_id:25179 AF323758.1 benzoate-degrading consortium clone BA003 prokMSA_id:27573 AF323763.1 benzoate-degrading consortium clone BA039 prokMSA_id:32886 AF323766.1 benzoate-degrading consortium clone BA044 prokMSA_id:82811 AY261813.1 UASB reactor granular sludge clone PD-UASB-35 sp. prokMSA_id:83667 AY261816.1 UASB reactor granular sludge clone PD-UASB-5 sp. prokMSA_id:84489 AY261817.1 UASB reactor granular sludge clone PD-UASB-54 sp. prokMSA_id:85759 AY261818.1 UASB reactor granular sludge clone PD-UASB-57 sp. prokMSA_id:86627 AY261815.1 UASB reactor granular sludge clone PD-UASB-40 sp. prokMSA_id:89665 AY297981.1 thermophilic anaerobic terephthalate-degrading sludge clone TTA_B114 prokMSA_id:90620 AY297985.1 thermophilic anaerobic terephthalate-degrading sludge clone TTA_B133 prokMSA_id:99402 AY661419.1 anaerobic hybrid reactor clone TTA_H113 prokMSA_id:110545 AY862536.1 rice slurry clone TPD-86 2.43.3.11.1.1.10094 OTU 2 seqs prokMSA_id:10844 X85131.1 Syntrophus buswellii prokMSA_id:10846 U81674.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinBC38 2.43.3.11.1.1.10285 OTU 2 seqs prokMSA_id:30060 AF282177.1 Desulfomonile limimaris prokMSA_id:36808 AF230531.1 Desulfomonile limimaris 2.43.3.11.1.1.10362 OTU 1 seq prokMSA_id:56266 AJ306775.1 DCP-dechlorinating consortium clone SHA-79 2.43.3.11.1.1.10368 OTU 3 seqs prokMSA_id:25091 AJ316024.1 Desulfomonile sp. clone 651 prokMSA_id:39526 AJ316023.1 Desulfomonile sp. clone 650 prokMSA_id:42269 AJ316021.1 Desulfomonile sp. clone 624 2.43.3.11.1.1.9665 OTU 3 seqs prokMSA_id:10849 X85132.1 Syntrophus gentianae prokMSA_id:66928 AJ306771.1 DCP-dechlorinating consortium clone SHA-42 prokMSA_id:99057 AB186852.1 polychlorinated dioxin dechlorinating microcosm clone TSBX09 2.43.3.11.1.1.9762 OTU 1 seq prokMSA_id:34985 AY053494.1 gas hydrate clone AT425_EubF5 2.43.3.11.1.1.9842 OTU 3 seqs prokMSA_id:10853 X87269.1 syntrophic propionate-oxidising clone SYN7 prokMSA_id:10860 AF126282.1 Smithella propionica prokMSA_id:77388 AF482441.1 granular sludge clone R4b16 2.43.3.11.1.1.9882 OTU 1 seq prokMSA_id:10845 AJ009471.1 anaerobic TCB-transforming consortium clone SJA-63 2.43.3.11.1.1.9903 OTU 1 seq prokMSA_id:32779 AF058008.1 PCB-dechlorinating enrichment 2.43.3.11.1.1.9909 OTU 1 seq prokMSA_id:10854 AF142809.1 clone ACE-34 2.43.3.11.1.1.9918 OTU 1 seq prokMSA_id:10855 AF142797.1 clone ACE-20 2.43.3.11.1.1.9922 OTU 1 seq prokMSA_id:10857 AJ133794.1 Syntrophus sp 2.43.3.11.1.1.9935 OTU 1 seq prokMSA_id:63262 AF523957.1 forested wetland clone FW117 2.43.3.11.1.1.9958 OTU 1 seq prokMSA_id:63258 AF523966.1 forested wetland clone FW99 2.43.3.11.1.1.9974 OTU 1 seq prokMSA_id:21347 AF351220.2 coal tar waste-contaminated groundwater clone 36-11 proteobacterium 2.43.3.11.2 Syntrophobacteraceae 45 seqs 2.43.3.11.2.1 sf_1 45 seqs 2.43.3.11.2.1.10003 OTU 1 seq prokMSA_id:73225 AF170418.1 Desulfacinum sp. str. M40/2 CIV-2.3 2.43.3.11.2.1.10013 OTU 1 seq prokMSA_id:67796 AF420341.2 hydrothermal sediment clone AF420341 2.43.3.11.2.1.10021 OTU 1 seq prokMSA_id:75593 AJ519630.1 uranium mill tailings soil sample clone Sh765B-TzT-29 proteobacterium 2.43.3.11.2.1.10100 OTU 1 seq prokMSA_id:33960 AJ300513.1 sulphate reducing clone DSB-DSa99-7 2.43.3.11.2.1.10111 OTU 1 seq prokMSA_id:74022 AF419677.1 hydrothermal vent sediment clone a2b033 2.43.3.11.2.1.10180 OTU 1 seq prokMSA_id:48147 AF234748.1 sludge clone H16 2.43.3.11.2.1.10184 OTU 2 seqs prokMSA_id:77292 AF482435.1 granular sludge clone R1p32 prokMSA_id:107363 AY426467.1 full-scale anaerobic UASB bioreactor treating paper mill wastewater clone E27 2.43.3.11.2.1.10208 OTU 1 seq prokMSA_id:28552 AF385080.1 Desulfacinum subterraneum str. 101 2.43.3.11.2.1.10221 OTU 1 seq prokMSA_id:77318 AF482439.1 granular sludge clone R3p4 2.43.3.11.2.1.10251 OTU 2 seqs prokMSA_id:10760 U49429.1 Syntrophobacter-like isolate prokMSA_id:10761 AJ012597.1 Desulfobacteriaceae 2.43.3.11.2.1.10274 OTU 1 seq prokMSA_id:10750 X70905.1 Syntrophobacter wolinii 2.43.3.11.2.1.10277 OTU 1 seq prokMSA_id:10752 X82874.1 Syntrophobacter fumaroxidans 2.43.3.11.2.1.10278 OTU 1 seq prokMSA_id:10753 AJ009502.1 anaerobic TCB-transforming consortium clone SJA-172 2.43.3.11.2.1.10280 OTU 1 seq prokMSA_id:10755 X94911.1 Syntrophobacter sp 2.43.3.11.2.1.10282 OTU 1 seq prokMSA_id:41839 AJ006619.1 Sulfate-reducing strain isolate str. STP34 2.43.3.11.2.1.10284 OTU 2 seqs prokMSA_id:33846 AJ300515.1 sulphate reducing clone DSB-DSa99-9 prokMSA_id:72386 AJ300516.1 sulphate reducing clone DSB-DSa99-10 2.43.3.11.2.1.10294 OTU 1 seq prokMSA_id:70282 AF170417.1 Desulfacinum hydrothermale str. MT-96 2.43.3.11.2.1.10302 OTU 1 seq prokMSA_id:38917 AF419675.1 hydrothermal vent sediment clone a1b020 2.43.3.11.2.1.9661 OTU 2 seqs prokMSA_id:66902 AJ306805.1 DCP-dechlorinating consortium clone SHD-1 prokMSA_id:77303 AF524857.1 sphagnum peat bog clone K-4b1 2.43.3.11.2.1.9663 OTU 4 seqs prokMSA_id:74078 AF354156.1 marine methane seep clone 1517 prokMSA_id:77835 AJ535233.1 marine sediment above hydrate ridge clone Hyd89-19 prokMSA_id:77896 AJ535254.1 marine sediment above hydrate ridge clone Hyd89-52 proteobacterium prokMSA_id:78341 AJ535250.1 marine sediment above hydrate ridge clone Hyd89-66 proteobacterium 2.43.3.11.2.1.9687 OTU 1 seq prokMSA_id:36814 AF170420.1 Thermodesulforhabdus n. sp. str. M40/2 CIV-3.2 2.43.3.11.2.1.9729 OTU 1 seq prokMSA_id:41940 AF402972.1 hot spring clone bacteriap2 2.43.3.11.2.1.9731 OTU 1 seq prokMSA_id:76056 AJ518795.1 uranium mining waste pile clone JG37-AG-90 proteobacterium 2.43.3.11.2.1.9780 OTU 1 seq prokMSA_id:48894 AJ300514.1 sulphate reducing clone DSB-DSa99-8 2.43.3.11.2.1.9799 OTU 1 seq prokMSA_id:22050 AJ300511.1 sulphate reducing clone DSB-DSa99-5 2.43.3.11.2.1.9805 OTU 1 seq prokMSA_id:21898 AF424237.1 clone MERTZ_0CM_327 2.43.3.11.2.1.9845 OTU 1 seq prokMSA_id:75884 AJ518800.1 uranium mining waste pile clone JG37-AG-128 proteobacterium 2.43.3.11.2.1.9846 OTU 1 seq prokMSA_id:10756 AJ241015.1 Norway:(Svalbard)Hornsund clone Sva0812b 2.43.3.11.2.1.9848 OTU 1 seq prokMSA_id:10759 X83274.1 Desulforhabdus amnigenus 2.43.3.11.2.1.9864 OTU 1 seq prokMSA_id:75261 AJ518801.1 uranium mining waste pile clone JG37-AG-133 proteobacterium 2.43.3.11.2.1.9917 OTU 2 seqs prokMSA_id:10764 AF026988.1 complete clone OPB8 prokMSA_id:10765 AF026989.1 hotspring clone OPB78 2.43.3.11.2.1.9938 OTU 1 seq prokMSA_id:42456 AF364915.1 clone clB10 2.43.3.11.2.1.9947 OTU 1 seq prokMSA_id:10771 AF026998.1 hot spring clone OPB16 2.43.3.11.2.1.9978 OTU 1 seq prokMSA_id:66926 AJ306772.1 DCP-dechlorinating consortium clone SHA-50 2.43.3.11.2.1.9982 OTU 3 seqs prokMSA_id:50160 AF424180.1 clone MERTZ_2CM_7 prokMSA_id:51575 AF424209.1 clone MERTZ_2CM_165 prokMSA_id:78365 AJ535245.1 marine sediment above hydrate ridge clone Hyd89-23 2.43.3.12 Unclassified 60 seqs 2.43.3.12.1 Syntrophaceae 3 seqs 2.43.3.12.1.1 sf_1 3 seqs 2.43.3.12.1.1.10237 OTU 3 seqs prokMSA_id:19918 AF351212.1 coal tar-contaminated groundwater clone 12-2 prokMSA_id:39383 AF351238.1 coal tar waste-contaminated groundwater clone 8-45 proteobacterium prokMSA_id:81001 AY161237.1 psychrophilic anaerobic digesters clone SSADM_ED8 2.43.3.12.2 Unclassified 57 seqs 2.43.3.12.2.1 sf_10 1 seq 2.43.3.12.2.1.9961 OTU 1 seq prokMSA_id:10777 AF159685.1 related to 2.43.3.12.2.2 sf_6 1 seq 2.43.3.12.2.2.9858 OTU 1 seq prokMSA_id:49070 AF234131.1 Sturt arid-zone soil clone #0319-6G20 2.43.3.12.2.3 sf_7 1 seq 2.43.3.12.2.3.10048 OTU 1 seq prokMSA_id:16746 AJ252670.1 Rhizosphere soil RSC-II-6 () clone RSC-II-6 2.43.3.12.2.4 sf_9 54 seqs 2.43.3.12.2.4.10018 OTU 1 seq prokMSA_id:52634 AF424218.1 clone MERTZ_2CM_249 2.43.3.12.2.4.10049 OTU 1 seq prokMSA_id:66925 AJ306774.1 DCP-dechlorinating consortium clone SHA-72 2.43.3.12.2.4.10068 OTU 2 seqs prokMSA_id:76542 AY164432.1 hypersaline anoxic basin; brine interface Urania Mediterranean Sea clone ULIB-16 prokMSA_id:76733 AY164341.1 hypersaline anoxic basin; brine interface L'Atalante Mediterranean Sea clone ALIB-19 2.43.3.12.2.4.10093 OTU 1 seq prokMSA_id:17185 AF424193.1 clone MERTZ_2CM_61 2.43.3.12.2.4.10115 OTU 1 seq prokMSA_id:10873 AF146250.1 clone CLEAR-27 2.43.3.12.2.4.10145 OTU 1 seq prokMSA_id:35746 AF424200.1 clone MERTZ_2CM_117 2.43.3.12.2.4.10152 OTU 1 seq prokMSA_id:34381 AF224824.1 clone Car99rb 2.43.3.12.2.4.10157 OTU 1 seq prokMSA_id:29555 AF424246.1 clone MERTZ_21CM_196 2.43.3.12.2.4.10167 OTU 1 seq prokMSA_id:72297 AF424233.1 clone MERTZ_0CM_142 2.43.3.12.2.4.10174 OTU 1 seq prokMSA_id:10715 U62840.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB17 2.43.3.12.2.4.10185 OTU 1 seq prokMSA_id:10704 AJ241021.1 Norway:(Svalbard)Hornsund clone Sva0590 2.43.3.12.2.4.10191 OTU 1 seq prokMSA_id:67800 AF420337.1 hydrothermal sediment clone AF420337 2.43.3.12.2.4.10204 OTU 1 seq prokMSA_id:10722 AF146233.1 clone CLEAR-9 2.43.3.12.2.4.10206 OTU 1 seq prokMSA_id:10673 AF026994.1 clone OPS22 2.43.3.12.2.4.10210 OTU 1 seq prokMSA_id:29359 AF424229.1 clone MERTZ_0CM_49 2.43.3.12.2.4.10213 OTU 1 seq prokMSA_id:10678 AF154096.1 hydrocarbon seep clone BPC076 2.43.3.12.2.4.10218 OTU 1 seq prokMSA_id:39191 AF424264.1 clone MERTZ_21CM_402 2.43.3.12.2.4.10220 OTU 1 seq prokMSA_id:26233 AF424263.1 clone MERTZ_21CM_386 2.43.3.12.2.4.10287 OTU 1 seq prokMSA_id:29943 AF328188.1 clone KS47 2.43.3.12.2.4.10320 OTU 1 seq prokMSA_id:38237 AF224821.1 clone Car95fb 2.43.3.12.2.4.10321 OTU 1 seq prokMSA_id:41174 AB077350.1 deep-sea sediment clone TYM--13 2.43.3.12.2.4.10327 OTU 1 seq prokMSA_id:30757 AY038523.1 clone CD4B6 2.43.3.12.2.4.10346 OTU 1 seq prokMSA_id:46410 AB031631.1 clone TIHP368-09 2.43.3.12.2.4.10380 OTU 1 seq prokMSA_id:10681 AJ241001.1 Norway:(Svalbard)Hornsund clone Sva0485 2.43.3.12.2.4.244 OTU 1 seq prokMSA_id:63100 AY093483.1 deep marine sediment clone MB-C2-152 2.43.3.12.2.4.506 OTU 1 seq prokMSA_id:17055 AF328222.1 clone KS89 2.43.3.12.2.4.9677 OTU 2 seqs prokMSA_id:28632 AF224837.1 clone Car58fc prokMSA_id:37303 AF224834.1 clone Car45fc 2.43.3.12.2.4.9738 OTU 1 seq prokMSA_id:71121 AF354149.1 marine methane seep clone 1513 2.43.3.12.2.4.9749 OTU 1 seq prokMSA_id:28314 AF424226.1 clone MERTZ_2CM_331 2.43.3.12.2.4.9759 OTU 1 seq prokMSA_id:10680 AB015243.1 deepest cold-seep area Japan Trench clone JTB38 proteobacterium 2.43.3.12.2.4.9760 OTU 1 seq prokMSA_id:63116 AY093467.1 deep marine sediment clone MB-A2-137 2.43.3.12.2.4.9763 OTU 1 seq prokMSA_id:55539 AY083024.1 clone SLM-DSBAC-74 2.43.3.12.2.4.9768 OTU 1 seq prokMSA_id:16373 AF211260.1 brackish water black mud clone CE49 2.43.3.12.2.4.9770 OTU 1 seq prokMSA_id:19507 AF424195.1 clone MERTZ_2CM_75 2.43.3.12.2.4.9784 OTU 1 seq prokMSA_id:78912 AY177804.1 Antarctic sediment clone LH5_30 2.43.3.12.2.4.9786 OTU 1 seq prokMSA_id:16378 AF424194.1 clone MERTZ_2CM_70 2.43.3.12.2.4.9787 OTU 1 seq prokMSA_id:10687 AF159686.1 related to 2.43.3.12.2.4.9798 OTU 1 seq prokMSA_id:76094 AJ519663.1 uranium mill tailings soil sample clone GuBH2-AD/TzT-67 proteobacterium 2.43.3.12.2.4.9812 OTU 1 seq prokMSA_id:24543 AF293008.1 ferromanganous micronodule clone MND4 2.43.3.12.2.4.9859 OTU 1 seq prokMSA_id:16437 AF424236.1 clone MERTZ_0CM_225 2.43.3.12.2.4.9876 OTU 1 seq prokMSA_id:63111 AY093471.1 deep marine sediment clone MB-B2-106 2.43.3.12.2.4.9890 OTU 1 seq prokMSA_id:77960 AB089106.1 termite gut homogenate clone Rs-K70 proteobacterium 2.43.3.12.2.4.9910 OTU 1 seq prokMSA_id:30882 AF424223.1 clone MERTZ_2CM_306 2.43.3.12.2.4.9911 OTU 1 seq prokMSA_id:20323 AF424253.1 clone MERTZ_21CM_270 2.43.3.12.2.4.9924 OTU 1 seq prokMSA_id:10703 AB013831.1 NB1-j clone NB1-j 2.43.3.12.2.4.9975 OTU 1 seq prokMSA_id:59898 AY133092.1 TCE-contaminated site clone ccslm247 2.43.3.12.2.4.9983 OTU 3 seqs prokMSA_id:25416 AF424259.1 clone MERTZ_21CM_326 prokMSA_id:37225 AF424258.1 clone MERTZ_21CM_313 prokMSA_id:112831 AB188782.1 cold seep sediment clone SB3-24 2.43.3.12.2.4.9993 OTU 3 seqs prokMSA_id:31035 AJ252685.1 Rhizosphere soil RSC-II-54 () clone RSC-II-54 prokMSA_id:35486 AJ252629.1 Agricultural soil SC-I-29 () clone SC-I-29 prokMSA_id:75356 AY150898.1 disturbed surface soil clone GR10 2.43.3.2 Bdellovibrionales 61 seqs 2.43.3.2.1 Bdellovibrionaceae 43 seqs 2.43.3.2.1.1 sf_1 16 seqs 2.43.3.2.1.1.10010 OTU 1 seq prokMSA_id:75942 AJ518802.1 uranium mining waste pile clone JG37-AG-139 proteobacterium 2.43.3.2.1.1.10250 OTU 1 seq prokMSA_id:40173 AJ290009.1 Germany: Lake Fuchskuhle north basin clone FukuN9 FukuN9 2.43.3.2.1.1.10271 OTU 2 seqs prokMSA_id:31879 AF084857.1 Bdellovibrio sp. str. JS3 prokMSA_id:38577 AF084859.1 litoralis str. JS5 2.43.3.2.1.1.9692 OTU 1 seq prokMSA_id:33331 AB054175.1 marine sponge clone HOC41 2.43.3.2.1.1.9748 OTU 2 seqs prokMSA_id:49685 AJ288899.1 Bacteriovorax stolpii prokMSA_id:67145 AY094131.1 stolpii str. Uki2 2.43.3.2.1.1.9778 OTU 1 seq prokMSA_id:38634 AF084853.1 Bdellovibrio sp. str. Gunpowder 2.43.3.2.1.1.9802 OTU 1 seq prokMSA_id:10535 AJ240999.1 Norway:(Svalbard)Hornsund clone Sva0447 2.43.3.2.1.1.9844 OTU 6 seqs prokMSA_id:19894 AF084862.1 Bdellovibrio sp. str. JS7 prokMSA_id:22841 AF084863.1 Bdellovibrio sp. str. JS10 prokMSA_id:23141 AF084858.1 Bdellovibrio sp. str. JS4 prokMSA_id:25914 AF084856.1 Bdellovibrio sp. str. JS2 prokMSA_id:28791 AF084860.1 Bdellovibrio sp. str. JS6 prokMSA_id:38867 AF084861.1 Bdellovibrio sp. str. JS7 2.43.3.2.1.1.9893 OTU 1 seq prokMSA_id:52092 AF084855.1 marinus str. AQ 2.43.3.2.1.2 sf_2 26 seqs 2.43.3.2.1.2.10036 OTU 19 seqs prokMSA_id:24625 AJ292760.1 Bdellovibrio str. HD 127 DSM 50708 prokMSA_id:38436 AF263832.1 Bdellovibrio str. SRE7 prokMSA_id:39664 AJ278145.1 Bdellovibrio str. DSM 50705 prokMSA_id:40800 AJ292759.1 Bdellovibrio bacteriovorus HD100 prokMSA_id:40880 AF084850.1 Bdellovibrio str. 100 prokMSA_id:44877 AF084851.1 Bdellovibrio str. E prokMSA_id:67144 AY094129.1 Bdellovibrio str. ox92 prokMSA_id:67148 AY094127.1 Bdellovibrio str. E prokMSA_id:67149 AY094126.1 Bdellovibrio str. 2484Se2 prokMSA_id:67150 AY094123.1 Bdellovibrio sp. str. Vietnam prokMSA_id:67151 AY094121.1 Bdellovibrio sp. str. P prokMSA_id:67152 AY094125.1 Bdellovibrio str. 109J prokMSA_id:67153 AY094122.1 Bdellovibrio sp. str. Tu-113 prokMSA_id:67155 AY094124.1 Bdellovibrio str. 109D prokMSA_id:67162 AY094114.1 Bdellovibrio sp. str. Hefner prokMSA_id:67164 AY094109.1 Bdellovibrio sp. str. ARL-12 prokMSA_id:67170 AY094107.1 Bdellovibrio sp. str. albina1 prokMSA_id:67176 AY094106.1 Bdellovibrio sp. str. 6-5-S prokMSA_id:105398 AY294214.1 Bdellovibrio sp. str. L 2.43.3.2.1.2.7360 OTU 2 seqs prokMSA_id:38231 AF445695.1 travertine hot spring clone SM1G01 prokMSA_id:43604 AF445705.1 travertine hot spring clone SM1H08 2.43.3.2.1.2.9718 OTU 1 seq prokMSA_id:16939 AF263833.1 Bdellovibrio str. SRA9 2.43.3.2.1.2.9851 OTU 1 seq prokMSA_id:38566 AJ292518.1 Bdellovibrio sp. W str. ATCC 27047 2.43.3.2.1.2.9863 OTU 1 seq prokMSA_id:74869 AF148941.1 Bdellovibrio str. TRA2 2.43.3.2.1.2.9996 OTU 2 seqs prokMSA_id:30112 AF148939.1 Bdellovibrio str. BRP4 prokMSA_id:49295 AF148938.1 Bdellovibrio str. BEP2 2.43.3.2.1.3 sf_3 1 seq 2.43.3.2.1.3.10310 OTU 1 seq prokMSA_id:48781 AF229780.1 terephthalate-degrading consortium clone TA07 2.43.3.2.2 Unclassified 18 seqs 2.43.3.2.2.1 sf_1 17 seqs 2.43.3.2.2.1.6951 OTU 1 seq prokMSA_id:6258 U65908.1 found at 250 meters Sargasso Sea clone Sar324 2.43.3.2.2.1.7053 OTU 1 seq prokMSA_id:6184 U65912.1 found at 250 meters Sargasso Sea clone Sar248 2.43.3.2.2.1.7382 OTU 13 seqs prokMSA_id:17664 AF440708.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-20 prokMSA_id:19587 AF355038.1 marine clone Arctic95A-13 prokMSA_id:20106 AF355041.1 marine clone Arctic96BD-3 prokMSA_id:24014 U86517.1 Sampling site subtropical Atlantic near Bermuda; 32 17.38 N 64 deg. 33.65 min. W 1000 m depth clone pB1-87 prokMSA_id:31338 AF355039.1 marine clone Arctic95C-5 prokMSA_id:42569 AF245652.1 SAR324 clone NAC60-12 prokMSA_id:46779 AF355040.1 marine clone Arctic96AD-7 prokMSA_id:47801 U86456.1 Sampling site Northwest Pacific Ocean California Current 32deg.32.27'N 121deg21.53'W; 3000 m depth; E. coli alignment positions 537 to 1391 clone pN1-23 prokMSA_id:80055 AY220714.1 water column Porcupine Abyssal Plain Northeast Atlantic Ocean clone WCPAP10 prokMSA_id:103115 AB186987.1 Mariana trough hydrothermal vent water 0.2micro-m filterable fraction clone MT-NB38 prokMSA_id:107792 AB186995.1 Suiyo seamount hydrothermal vent water 0.2micro-m filterable fraction clone SSM-NB08 prokMSA_id:108866 AB193909.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT797-NB17 prokMSA_id:108868 AB193911.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM263-NB02 2.43.3.2.2.1.9817 OTU 1 seq prokMSA_id:10832 U65915.1 found at 250 meters Sargasso Sea clone Sar276 2.43.3.2.2.1.9823 OTU 1 seq prokMSA_id:10690 AB015549.1 deep-sea sediment clone BD3-7 2.43.3.2.2.2 sf_2 1 seq 2.43.3.2.2.2.9764 OTU 1 seq prokMSA_id:23625 AF371949.1 phylotype OTU-349 swine intestine clone p-4193-6Wa5 2.43.3.3 dechlorinating clone group 8 seqs 2.43.3.3.1 Unclassified 8 seqs 2.43.3.3.1.1 sf_1 8 seqs 2.43.3.3.1.1.10008 OTU 1 seq prokMSA_id:20001 AF229784.1 terephthalate-degrading consortium clone TA11 2.43.3.3.1.1.10177 OTU 1 seq prokMSA_id:10718 AJ009465.1 TCB-transforming consortium clone SJA-51 2.43.3.3.1.1.10182 OTU 1 seq prokMSA_id:47124 AF229786.1 terephthalate-degrading consortium clone TA13 2.43.3.3.1.1.10219 OTU 1 seq prokMSA_id:38392 AF050538.1 contaminated aquifer clone WCHB1-27 2.43.3.3.1.1.10335 OTU 1 seq prokMSA_id:71269 AF229789.1 terephthalate-degrading consortium clone TA16 2.43.3.3.1.1.9723 OTU 1 seq prokMSA_id:34143 AJ249114.1 DCP-dechlorinating consortium clone SHA-207 2.43.3.3.1.1.9819 OTU 1 seq prokMSA_id:29387 AF229787.1 terephthalate-degrading consortium clone TA14 2.43.3.3.1.1.9959 OTU 1 seq prokMSA_id:63259 AF523965.1 forested wetland clone FW110 2.43.3.4 Desulfobacterales 387 seqs 2.43.3.4.1 Desulfoarculaceae 2 seqs 2.43.3.4.1.1 sf_1 1 seq 2.43.3.4.1.1.9949 OTU 1 seq prokMSA_id:10775 U85477.1 Desulfoarculus sp. BG74 2.43.3.4.1.2 sf_2 1 seq 2.43.3.4.1.2.10227 OTU 1 seq prokMSA_id:80396 AY193132.1 marine sediment clone Bol11 2.43.3.4.2 Desulfobacteraceae 268 seqs 2.43.3.4.2.1 sf_5 268 seqs 2.43.3.4.2.1.10000 OTU 1 seq prokMSA_id:36298 AF424215.1 clone MERTZ_2CM_224 2.43.3.4.2.1.10002 OTU 1 seq prokMSA_id:10934 U85470.1 Desulfobotulus sp. BG14 2.43.3.4.2.1.10004 OTU 2 seqs prokMSA_id:10897 U45991.1 Desulfonema ishimotoei prokMSA_id:10898 U45992.1 Desulfonema ishimotoei 2.43.3.4.2.1.10006 OTU 1 seq prokMSA_id:32393 AF230098.1 Norway: Svalbard Hornsund clone Sva0605 2.43.3.4.2.1.10017 OTU 1 seq prokMSA_id:70417 AF354158.1 marine methane seep clone 1517 2.43.3.4.2.1.10031 OTU 1 seq prokMSA_id:78513 AY177795.1 Antarctic sediment clone SB1_49 2.43.3.4.2.1.10037 OTU 1 seq prokMSA_id:36468 AF424212.1 clone MERTZ_2CM_195 2.43.3.4.2.1.10039 OTU 1 seq prokMSA_id:71601 AF418177.1 Desulfobacterium autotrophicum 2.43.3.4.2.1.10046 OTU 12 seqs prokMSA_id:10878 AJ240975.1 Norway:(Svalbard)Hornsund clone Sva0081 prokMSA_id:10879 AJ240977.1 Norway:(Svalbard)Hornsund clone Sva0863 prokMSA_id:10887 M34407.1 Desulfosarcina variabilis prokMSA_id:10888 AJ237603.1 Desulfobacterium cetonicum str. DSM 7267 oil recovery water prokMSA_id:10889 Y17286.1 strain isolate str. oXyS1 prokMSA_id:10894 Y17698.1 isolate str. Hxd3 prokMSA_id:19549 AF328857.1 Olavius algarvensis sulfate-reducing endosymbiont sulfate-reducing prokMSA_id:67851 AY082457.1 neutral pH mine biofilm clone 44a-B1-10 prokMSA_id:78122 AJ535235.1 marine sediment above hydrate ridge clone Hyd89-21 proteobacterium prokMSA_id:78353 AJ535248.1 marine sediment above hydrate ridge clone Hyd89-63 proteobacterium prokMSA_id:78667 AY177791.1 Antarctic sediment clone SB4_53 prokMSA_id:112059 AY771944.1 marine surface sediment clone SQ32 2.43.3.4.2.1.10057 OTU 1 seq prokMSA_id:48770 AF211271.1 hypersaline black mud clone MT22 2.43.3.4.2.1.10061 OTU 1 seq prokMSA_id:24313 AF424266.1 clone MERTZ_21CM_413 2.43.3.4.2.1.10072 OTU 2 seqs prokMSA_id:10923 U85469.1 Desulfobacter sp. str. BG8 prokMSA_id:10924 U85472.1 Desulfobacter sp. str. BG23 2.43.3.4.2.1.10073 OTU 1 seq prokMSA_id:10875 AJ012595.1 Desulfobacteriaceae 2.43.3.4.2.1.10078 OTU 1 seq prokMSA_id:10872 AF142807.1 clone ACE-32 2.43.3.4.2.1.10083 OTU 2 seqs prokMSA_id:67544 AJ441315.1 Desulfobacter latus str. DSM 3381 prokMSA_id:74171 AF418175.1 Desulfobacter curvatus str. DSM 3379 2.43.3.4.2.1.10102 OTU 1 seq prokMSA_id:10867 AF022936.1 Desulfocella halophila 2.43.3.4.2.1.10103 OTU 1 seq prokMSA_id:10869 U45989.1 Desulfonema magnum str. DSM 2077 anaerobic mud seawater lagoon (Etang de Prevost) near Montpellier France 2.43.3.4.2.1.10114 OTU 1 seq prokMSA_id:10871 AF142937.1 clone PENDANT-25 2.43.3.4.2.1.10116 OTU 1 seq prokMSA_id:29306 AF424182.1 clone MERTZ_2CM_23 2.43.3.4.2.1.10117 OTU 1 seq prokMSA_id:10876 AF177428.1 isolate str. S2551 2.43.3.4.2.1.10130 OTU 1 seq prokMSA_id:22240 AF224861.1 clone Car148rc 2.43.3.4.2.1.10134 OTU 1 seq prokMSA_id:17347 AF424222.1 clone MERTZ_2CM_274 2.43.3.4.2.1.10136 OTU 2 seqs prokMSA_id:70182 AF420349.1 hydrothermal sediment clone AF420349 prokMSA_id:86333 AY197382.1 Guaymas Basin hydrothermal vent sediments clone B01R011 2.43.3.4.2.1.10148 OTU 7 seqs prokMSA_id:10929 AF177429.1 isolate str. S2651 prokMSA_id:31826 AF233370.1 Desulfotignum balticum str. Sax (DSM 7044) marine mud prokMSA_id:40669 AJ132720.1 deep-sea hydrothermal chimney clone CHA3-118 prokMSA_id:51719 AF418176.1 Desulfotignum balticum str. DSM 7044 prokMSA_id:52280 AJ132719.1 deep-sea hydrothermal chimney clone CHA3-100 prokMSA_id:59113 AF420288.1 Desulfotignum phosphitoxidans str. FiPS3 prokMSA_id:59114 AF420289.1 Desulfotignum phosphitoxidans str. FiPS5 2.43.3.4.2.1.10158 OTU 1 seq prokMSA_id:52002 AF058007.1 PCB-dechlorinating enrichment 2.43.3.4.2.1.10164 OTU 1 seq prokMSA_id:22644 AF424216.1 clone MERTZ_2CM_229 2.43.3.4.2.1.10183 OTU 1 seq prokMSA_id:23602 AF424184.1 clone MERTZ_2CM_30 2.43.3.4.2.1.10194 OTU 1 seq prokMSA_id:31848 AF243334.1 Desulforegula conservatrix 2.43.3.4.2.1.10222 OTU 1 seq prokMSA_id:48164 AF233496.1 sediment clone 2.43.3.4.2.1.10226 OTU 1 seq prokMSA_id:10938 AF099056.1 Desulfobacterium sp. str. LSv25 2.43.3.4.2.1.10228 OTU 1 seq prokMSA_id:71766 AF354151.1 marine methane seep clone 1527 2.43.3.4.2.1.10239 OTU 1 seq prokMSA_id:66102 AB074950.1 clone:KU32 clone KU32 2.43.3.4.2.1.10245 OTU 1 seq prokMSA_id:17424 AF286034.1 mercury and PCB contaminated saltmarsh sediment clone LCP-80 LCP-80 2.43.3.4.2.1.10252 OTU 1 seq prokMSA_id:10942 AF029042.1 Benzene mineralizing consortium complete clone SB-9 consortium 2.43.3.4.2.1.10256 OTU 1 seq prokMSA_id:81354 AY216443.1 temperate estuarine mud clone KM88 2.43.3.4.2.1.10257 OTU 1 seq prokMSA_id:10905 AF029047.1 Benzene mineralizing consortium complete clone SB-29 consortium 2.43.3.4.2.1.10265 OTU 1 seq prokMSA_id:35645 AF233491.1 sediment clone 2.43.3.4.2.1.10266 OTU 1 seq prokMSA_id:45971 AB077349.1 deep-sea sediment clone TYM--12 2.43.3.4.2.1.10267 OTU 1 seq prokMSA_id:77873 AJ535249.1 marine sediment above hydrate ridge clone Hyd89-61 proteobacterium 2.43.3.4.2.1.10268 OTU 1 seq prokMSA_id:71734 AY083025.1 clone SLM-DSBAC-75 2.43.3.4.2.1.10275 OTU 1 seq prokMSA_id:78421 AY177799.1 Antarctic sediment clone SB2_13 2.43.3.4.2.1.10276 OTU 1 seq prokMSA_id:50478 AF424185.1 clone MERTZ_2CM_32 2.43.3.4.2.1.10283 OTU 1 seq prokMSA_id:72950 AF354159.1 marine methane seep clone 1453 2.43.3.4.2.1.10293 OTU 1 seq prokMSA_id:47732 AF441956.1 clone CD12B1 2.43.3.4.2.1.10301 OTU 1 seq prokMSA_id:45289 AF354164.1 marine methane seep clone 1476 2.43.3.4.2.1.10304 OTU 1 seq prokMSA_id:26478 AF424214.1 clone MERTZ_2CM_222 2.43.3.4.2.1.10305 OTU 3 seqs prokMSA_id:24500 AJ300508.1 sulphate reducing DSB-DSb99-2 prokMSA_id:39493 AJ300507.1 sulphate reducing clone DSB-DSb99-1 prokMSA_id:41496 AJ300510.1 sulphate reducing clone DSB-DSa99-4 2.43.3.4.2.1.10306 OTU 6 seqs prokMSA_id:10866 Y17501.1 isolate str. Pnd3 prokMSA_id:47033 AF468969.1 isolate str. S2552 prokMSA_id:50635 AF148141.1 isolate str. S2550 prokMSA_id:79514 AY184360.2 Desulfatibacillum aliphaticivorans str. CV2803 prokMSA_id:103090 AY493562.1 Desulfatibacillum alkenivorans str. PF2803 prokMSA_id:103236 AY493563.1 Sulfate-reducing isolate str. PF2802 2.43.3.4.2.1.10315 OTU 1 seq prokMSA_id:38926 AB022613.1 SA56 clone 2.43.3.4.2.1.10319 OTU 1 seq prokMSA_id:74021 AY083017.1 sulfate-reducing habitat clone SLM-CP-116 2.43.3.4.2.1.10323 OTU 1 seq prokMSA_id:10937 U51845.1 "Desulfobacterium niacini" 2.43.3.4.2.1.10325 OTU 1 seq prokMSA_id:35699 AF424247.1 clone MERTZ_21CM_204 2.43.3.4.2.1.10342 OTU 1 seq prokMSA_id:39986 AY053490.1 gas hydrate clone AT425_EubD9 2.43.3.4.2.1.10364 OTU 113 seqs prokMSA_id:10881 U08394.1 gram-negative anaerobic clone A52 prokMSA_id:10882 U08389.1 gram-negative anaerobic clone A34 prokMSA_id:10883 L06458.1 Iron sulfide-containing magnetotactic prokMSA_id:10884 L06457.1 marine clone MMP1991 prokMSA_id:32185 AF211261.1 brackish water black mud clone CE53 prokMSA_id:33579 AF121085.1 obtained marine sediment near Cascadia Margin clone ODP8-U3 prokMSA_id:36525 AF424260.1 clone MERTZ_21CM_335 prokMSA_id:44649 AF146251.1 clone CLEAR-29 prokMSA_id:45852 AF424265.1 clone MERTZ_21CM_410 prokMSA_id:49238 AF211263.1 brackish water black mud clone CE101 prokMSA_id:56126 AB081545.1 consortium enriched on toluene under sulfate reduction clone Tol-K-1 prokMSA_id:59736 AY133458.1 coastal Antarctic sediment clone OB3_136 prokMSA_id:59744 AY133452.1 coastal Antarctic sediment clone OB3_142 prokMSA_id:59747 AY133451.1 coastal Antarctic sediment clone OB3_87 prokMSA_id:61135 AF530123.1 isolate MGP DGGE Band 24A clone prokMSA_id:61137 AF530122.1 isolate MGP DGGE Band 23 clone prokMSA_id:61142 AF530118.1 isolate MGP DGGE Band 19A clone prokMSA_id:63569 AB069803.1 deep-sea cold seep area Japan Trench clone CS8.12 prokMSA_id:71221 AB081535.1 crude oil-degrading sulfate-reducing consortium clone Oil-K-2 prokMSA_id:72051 AF360639.1 estuarine sediment clone INOC-RNA22 prokMSA_id:72104 AF354146.1 marine methane seep clone 1523 prokMSA_id:93594 AY361941.1 clone P8-GEO-4 prokMSA_id:94313 AY374925.1 salt marsh sediment clone PI_nr9_c4 prokMSA_id:94314 AY374779.1 salt marsh sediment clone PI_486_c7 prokMSA_id:94325 AY374937.1 salt marsh sediment clone PI_r142_c2 prokMSA_id:94341 AY374772.1 salt marsh sediment clone PI_r69_c2 prokMSA_id:94354 AY374881.1 salt marsh sediment clone PI_6RA09 prokMSA_id:94365 AY374661.1 salt marsh sediment clone PI_6L14 prokMSA_id:94389 AY374893.1 salt marsh sediment clone PI_6TC02 prokMSA_id:94406 AY374848.1 salt marsh sediment clone PI_6N83 prokMSA_id:94421 AY374818.1 salt marsh sediment clone PI_6EC11 prokMSA_id:94423 AY374830.1 salt marsh sediment clone PI_6M83 prokMSA_id:94425 AY374758.1 salt marsh sediment clone PI_r172_c2 prokMSA_id:94427 AY374899.1 salt marsh sediment clone PI_6UF01 prokMSA_id:94434 AY374776.1 salt marsh sediment clone PI_r95_c2 prokMSA_id:94450 AY374946.1 salt marsh sediment clone PI_r158_c2 prokMSA_id:94454 AY374872.1 salt marsh sediment clone PI_6AF12 prokMSA_id:94458 AY374831.1 salt marsh sediment clone PI_6L03 prokMSA_id:94460 AY374657.1 salt marsh sediment clone PI_6M43 prokMSA_id:94472 AY374770.1 salt marsh sediment clone PI_r64_c2 prokMSA_id:94479 AY374827.1 salt marsh sediment clone PI_6H73 prokMSA_id:94507 AY374684.1 salt marsh sediment clone PI_6G46 prokMSA_id:94508 AY374787.1 salt marsh sediment clone PI_nr15_c5 prokMSA_id:94556 AY374828.1 salt marsh sediment clone PI_6H43 prokMSA_id:94567 AY374695.1 salt marsh sediment clone PI_6AC11 prokMSA_id:94576 AY374707.1 salt marsh sediment clone PI_6AH10 prokMSA_id:94585 AY374722.1 salt marsh sediment clone PI_6UD06 prokMSA_id:94594 AY374794.1 salt marsh sediment clone PI_nr5_c15 prokMSA_id:94611 AY374782.1 salt marsh sediment clone PI_nn3_c2 prokMSA_id:94626 AY374845.1 salt marsh sediment clone PI_6Q89 prokMSA_id:94647 AY374860.1 salt marsh sediment clone PI_6BB03_D05 prokMSA_id:94650 AY374851.1 salt marsh sediment clone PI_6Q36 prokMSA_id:94679 AY374957.1 salt marsh sediment clone PI_r24_c4 prokMSA_id:94689 AY374885.1 salt marsh sediment clone PI_6RB07 prokMSA_id:94738 AY374921.1 salt marsh sediment clone PI_nr29_c4 prokMSA_id:94743 AY374874.1 salt marsh sediment clone PI_6AG06 prokMSA_id:94745 AY374809.1 salt marsh sediment clone PI_r91_c3 prokMSA_id:94752 AY374926.1 salt marsh sediment clone PI_r101_c2 prokMSA_id:94762 AY374723.1 salt marsh sediment clone PI_6UD08 prokMSA_id:94793 AY374780.1 salt marsh sediment clone PI_nn1_c2 prokMSA_id:94795 AY374866.1 salt marsh sediment clone PI_6BC12 prokMSA_id:94804 AY374912.1 salt marsh sediment clone PI_nr17_c3 prokMSA_id:94806 AY374974.1 salt marsh sediment clone PI_r68_c2 prokMSA_id:94820 AY374773.1 salt marsh sediment clone PI_r85_c2 prokMSA_id:94831 AY374741.1 salt marsh sediment clone PI_r107_c2 prokMSA_id:94844 AY374898.1 salt marsh sediment clone PI_6TE01 prokMSA_id:94868 AY374945.1 salt marsh sediment clone PI_r156_c2 prokMSA_id:94872 AY374713.1 salt marsh sediment clone PI_6VA09 prokMSA_id:94887 AY374976.1 salt marsh sediment clone PI_r73_c2 prokMSA_id:94894 AY374824.1 salt marsh sediment clone PI_6YE12 prokMSA_id:94909 AY374886.1 salt marsh sediment clone PI_6UB08 prokMSA_id:94918 AY374943.1 salt marsh sediment clone PI_r153_c2 prokMSA_id:94952 AY374842.1 salt marsh sediment clone PI_6Q05 prokMSA_id:94956 AY374969.1 salt marsh sediment clone PI_r51_c3 prokMSA_id:94966 AY374833.1 salt marsh sediment clone PI_6L60 prokMSA_id:94974 AY374778.1 salt marsh sediment clone PI_r99_c2 prokMSA_id:94991 AY374811.1 salt marsh sediment clone PI_r98_c2 prokMSA_id:94995 AY374956.1 salt marsh sediment clone PI_r21_c5 prokMSA_id:95000 AY374838.1 salt marsh sediment clone PI_6O16 prokMSA_id:95004 AY374883.1 salt marsh sediment clone PI_6VA11 prokMSA_id:95011 AY374852.1 salt marsh sediment clone PI_6G69 prokMSA_id:95020 AY374804.1 salt marsh sediment clone PI_r25_c5 prokMSA_id:95023 AY374805.1 salt marsh sediment clone PI_r41_c5 prokMSA_id:95024 AY374980.1 salt marsh sediment clone PI_r84_c2 prokMSA_id:95028 AY374856.1 salt marsh sediment clone PI_6G40 prokMSA_id:95033 AY374795.1 salt marsh sediment clone PI_nr5_c25 prokMSA_id:95038 AY374841.1 salt marsh sediment clone PI_6N19 prokMSA_id:95039 AY374807.1 salt marsh sediment clone PI_r83_c3 prokMSA_id:95048 AY374675.1 salt marsh sediment clone PI_6D81 prokMSA_id:95087 AY374966.1 salt marsh sediment clone PI_r45_c3 prokMSA_id:95088 AY374832.1 salt marsh sediment clone PI_6L27 prokMSA_id:95092 AY374834.1 salt marsh sediment clone PI_6O92 prokMSA_id:95119 AY374757.1 salt marsh sediment clone PI_r16_c5 prokMSA_id:95141 AY374919.1 salt marsh sediment clone PI_nr27_c3 prokMSA_id:95143 AY374861.1 salt marsh sediment clone PI_6BB04 prokMSA_id:95145 AY374967.1 salt marsh sediment clone PI_r46_c3 prokMSA_id:95161 AY374870.1 salt marsh sediment clone PI_6BD11 prokMSA_id:99952 AY592200.1 marine ANAMMOX sediment clone AY592200 prokMSA_id:100264 AY592202.1 marine ANAMMOX sediment clone AY592202 prokMSA_id:102012 AY592683.1 deep-sea mud volcano clone BC07-3B-06 prokMSA_id:102157 AY592383.1 deep-sea mud volcano clone BC20-2B-23 prokMSA_id:103639 AY592706.1 deep-sea mud volcano clone BC07-3B-33 prokMSA_id:103862 AY592178.1 marine ANAMMOX sediment clone AY592178 prokMSA_id:104111 AY592192.1 marine ANAMMOX sediment clone AY592192 prokMSA_id:104345 AY592723.1 deep-sea mud volcano clone BC07-3B-56 prokMSA_id:104944 AY592354.1 deep-sea mud volcano clone BC20-1B-53 prokMSA_id:109282 AJ704681.1 marine sediment clone HMMVPog-6 prokMSA_id:111460 AY771936.1 marine surface sediment clone SB2 prokMSA_id:111597 AY771945.1 marine surface sediment clone SR27 prokMSA_id:111730 AY771938.1 marine surface sediment clone SB14 prokMSA_id:111869 AY771939.1 marine surface sediment clone SI29 prokMSA_id:112024 AY771941.1 marine surface sediment clone SK6 prokMSA_id:113838 AB188779.1 cold seep sediment clone SB3-7 2.43.3.4.2.1.10365 OTU 1 seq prokMSA_id:20214 AF424210.1 clone MERTZ_2CM_176 2.43.3.4.2.1.10374 OTU 2 seqs prokMSA_id:20823 AF369727.1 South Korea: mud flat Sunchon Bay Chunnam province clone 224 prokMSA_id:34662 AF369723.1 South Korea: mud flat Sunchon Bay Chunnam province clone 53 2.43.3.4.2.1.10379 OTU 1 seq prokMSA_id:38404 AY050589.1 clone GOUTB1 2.43.3.4.2.1.9666 OTU 1 seq prokMSA_id:78077 AJ535229.1 marine sediment above hydrate ridge clone Hyd89-13 proteobacterium 2.43.3.4.2.1.9675 OTU 1 seq prokMSA_id:10886 AF121886.1 2-bromophenol-dehalogenating consortium clone 2BP-6 2.43.3.4.2.1.9681 OTU 1 seq prokMSA_id:65440 AJ430774.1 sediment isolate str. EbS7 2.43.3.4.2.1.9685 OTU 1 seq prokMSA_id:18378 AF354165.1 marine methane seep clone 1376 2.43.3.4.2.1.9691 OTU 1 seq prokMSA_id:10890 AJ006853.1 Desulfobacterium sp. mXyS1 2.43.3.4.2.1.9696 OTU 1 seq prokMSA_id:44839 AF424211.1 clone MERTZ_2CM_190 2.43.3.4.2.1.9697 OTU 1 seq prokMSA_id:10891 AF141328.1 novel anaerobic alkane degrader marine-estuarine sediment isolate str. AK-01 AK-01 2.43.3.4.2.1.9699 OTU 1 seq prokMSA_id:10893 U81720.2 anaerobic digestor clone vadinHA60 2.43.3.4.2.1.9702 OTU 1 seq prokMSA_id:10895 AF146229.1 clone CLEAR-2 2.43.3.4.2.1.9703 OTU 1 seq prokMSA_id:43896 AF424242.1 clone MERTZ_21CM_102 2.43.3.4.2.1.9712 OTU 1 seq prokMSA_id:78718 AY177803.1 Antarctic sediment clone SB4_98 2.43.3.4.2.1.9715 OTU 1 seq prokMSA_id:47815 AF424204.1 clone MERTZ_2CM_130 2.43.3.4.2.1.9730 OTU 1 seq prokMSA_id:78733 AY177788.1 Antarctic sediment clone SB1_34 2.43.3.4.2.1.9737 OTU 3 seqs prokMSA_id:10933 X70953.1 Desulfobacula toluolica prokMSA_id:10936 AJ237606.1 Desulfobacula phenolica str. DSM 3384 marine mud prokMSA_id:67542 AJ441316.1 Desulfobacula toluolica str. DSM 7467 2.43.3.4.2.1.9752 OTU 1 seq prokMSA_id:52376 AJ300509.1 sulphate reducing clone DSB-DSb99-3 2.43.3.4.2.1.9765 OTU 1 seq prokMSA_id:50014 AF233495.1 sediment clone 2.43.3.4.2.1.9771 OTU 1 seq prokMSA_id:27380 AF424188.1 clone MERTZ_2CM_37 2.43.3.4.2.1.9776 OTU 1 seq prokMSA_id:24077 AF418173.1 Desulfococcus multivorans str. DSM 2059 2.43.3.4.2.1.9777 OTU 2 seqs prokMSA_id:84285 AY197413.1 Guaymas Basin hydrothermal vent sediments clone B04R008 prokMSA_id:86388 AY197376.1 Guaymas Basin hydrothermal vent sediments clone B01R004 2.43.3.4.2.1.9793 OTU 1 seq prokMSA_id:34756 AF224843.1 clone Car113fc 2.43.3.4.2.1.9794 OTU 1 seq prokMSA_id:40264 AJ132804.1 NaphS2 2.43.3.4.2.1.9797 OTU 1 seq prokMSA_id:69464 AF211272.1 hypersaline black mud clone MT25 2.43.3.4.2.1.9800 OTU 2 seqs prokMSA_id:63260 AF523960.1 forested wetland clone FW57 prokMSA_id:75569 AJ534628.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-55 2.43.3.4.2.1.9810 OTU 1 seq prokMSA_id:38445 AF424225.1 clone MERTZ_2CM_324 2.43.3.4.2.1.9818 OTU 1 seq prokMSA_id:81529 AY216453.1 temperate estuarine mud clone KM62 2.43.3.4.2.1.9821 OTU 1 seq prokMSA_id:37002 AF296213.1 2.43.3.4.2.1.9867 OTU 1 seq prokMSA_id:10922 U12254.1 Desulfobacter vibrioformis 2.43.3.4.2.1.9870 OTU 2 seqs prokMSA_id:17840 AF424434.1 clone MERTZ_21CM_126 prokMSA_id:63585 AB069783.1 deep-sea cold seep area Japan Trench clone CS2.2 2.43.3.4.2.1.9873 OTU 1 seq prokMSA_id:10900 AF099063.1 Desulfofaba gelida 2.43.3.4.2.1.9875 OTU 1 seq prokMSA_id:71753 AF420354.1 hydrothermal sediment clone AF420354 2.43.3.4.2.1.9877 OTU 1 seq prokMSA_id:10927 U51844.1 delta proteobacterium WN 2.43.3.4.2.1.9878 OTU 1 seq prokMSA_id:10901 AF099064.1 Desulfofrigus oceanense str. ASv26 2.43.3.4.2.1.9880 OTU 1 seq prokMSA_id:10902 AF099065.1 Desulfofrigus fragile str. LSv21 2.43.3.4.2.1.9885 OTU 1 seq prokMSA_id:10903 AJ012596.1 Desulfobacteriaceae 2.43.3.4.2.1.9886 OTU 1 seq prokMSA_id:10904 AF029045.1 Benzene mineralizing consortium complete clone SB-21 consortium 2.43.3.4.2.1.9887 OTU 1 seq prokMSA_id:26350 AF233494.1 sediment clone 2.43.3.4.2.1.9889 OTU 1 seq prokMSA_id:10928 AF099054.1 Desulfobacter sp. str. ASv25 2.43.3.4.2.1.9892 OTU 1 seq prokMSA_id:28971 AF249834.1 isolate str. S2450 2.43.3.4.2.1.9897 OTU 1 seq prokMSA_id:82326 AY216442.1 temperate estuarine mud clone KM95 2.43.3.4.2.1.9899 OTU 1 seq prokMSA_id:10906 AF029048.1 Benzene mineralizing consortium complete clone SB-30 consortium 2.43.3.4.2.1.9904 OTU 1 seq prokMSA_id:10908 AJ241002.1 Norway:(Svalbard)Hornsund clone Sva0516 2.43.3.4.2.1.9915 OTU 1 seq prokMSA_id:10935 U85474.1 Desulfobacterium sp. str. BG33 2.43.3.4.2.1.9916 OTU 1 seq prokMSA_id:10909 AJ241022.1 Norway:(Svalbard)Hornsund clone Sva0405 2.43.3.4.2.1.9919 OTU 1 seq prokMSA_id:10939 AB015244.1 deepest cold-seep area Japan Trench clone JTB133 proteobacterium 2.43.3.4.2.1.9925 OTU 1 seq prokMSA_id:78056 AJ535247.1 marine sediment above hydrate ridge clone Hyd89-22 proteobacterium 2.43.3.4.2.1.9926 OTU 1 seq prokMSA_id:46593 AJ277887.1 Desulfococcus biacutus str. DSM 5651T 2.43.3.4.2.1.9928 OTU 1 seq prokMSA_id:70799 AF354160.1 marine methane seep clone 1454 2.43.3.4.2.1.9937 OTU 1 seq prokMSA_id:29670 AF354162.1 marine methane seep clone 1525 2.43.3.4.2.1.9939 OTU 1 seq prokMSA_id:70859 AF354163.1 marine methane seep clone 1427 2.43.3.4.2.1.9940 OTU 1 seq prokMSA_id:78986 AY177800.1 Antarctic sediment clone SB2_56 2.43.3.4.2.1.9941 OTU 1 seq prokMSA_id:10940 X99637.1 Desulfospira joergensenii str. DSM10085 B331 2.43.3.4.2.1.9942 OTU 1 seq prokMSA_id:16656 AF424196.1 clone MERTZ_2CM_76 2.43.3.4.2.1.9943 OTU 1 seq prokMSA_id:10941 U85471.1 Desulfobacterium sp. str. BG18 2.43.3.4.2.1.9944 OTU 1 seq prokMSA_id:10943 AF136008.1 Desulfobacterium sp. str. BSv41 2.43.3.4.2.1.9954 OTU 1 seq prokMSA_id:43483 AF424252.1 clone MERTZ_21CM_256 2.43.3.4.2.1.9963 OTU 1 seq prokMSA_id:47877 AF418178.1 Desulfobacterium vacuolatum str. DSM 3385 2.43.3.4.2.1.9964 OTU 1 seq prokMSA_id:41841 AF233497.1 sediment clone 2.43.3.4.2.1.9965 OTU 1 seq prokMSA_id:32846 AF354147.1 marine methane seep clone 1517 2.43.3.4.2.1.9969 OTU 1 seq prokMSA_id:35610 AB022634.1 TK02 clone 2.43.3.4.2.1.9971 OTU 2 seqs prokMSA_id:16532 AF424213.1 clone MERTZ_2CM_220 prokMSA_id:36429 AF424261.1 clone MERTZ_21CM_340 2.43.3.4.2.1.9976 OTU 1 seq prokMSA_id:10925 U85476.1 Desulfobacter sp. str. BG72 2.43.3.4.2.1.9977 OTU 1 seq prokMSA_id:10926 Y14745.1 Desulfobacter halotolerans 2.43.3.4.2.1.9981 OTU 1 seq prokMSA_id:51809 AF233499.1 sediment clone 2.43.3.4.2.1.9995 OTU 1 seq prokMSA_id:71994 AF321820.1 Desulfofaba hansenii str. P1; DSM 12642; ATCC 700811 2.43.3.4.3 Desulfobulbaceae 103 seqs 2.43.3.4.3.1 sf_1 103 seqs 2.43.3.4.3.1.10032 OTU 3 seqs prokMSA_id:19356 AY050586.1 MCB-contaminated groundwater-treating reactor clone GOUTA17 prokMSA_id:59934 AY133065.1 TCE-contaminated site clone ccs202 prokMSA_id:62385 AF529133.1 trichloroethene-contaminated site clone FTLpost26 proteobacterium 2.43.3.4.3.1.10047 OTU 10 seqs prokMSA_id:69919 AF420334.1 hydrothermal sediment clone AF420334 prokMSA_id:71031 AF420335.1 hydrothermal sediment clone AF420335 prokMSA_id:77915 AJ535236.1 marine sediment above hydrate ridge clone Hyd24-08 proteobacterium prokMSA_id:77927 AJ535251.1 marine sediment above hydrate ridge clone Hyd89-40 proteobacterium prokMSA_id:101171 AY355301.1 epibiontic clone C11-D3 prokMSA_id:101832 AY355305.1 epibiontic clone C6-B1 prokMSA_id:102400 AY531563.1 Indian Ocean hydrothermal vent clone SF_C7-G10 prokMSA_id:103974 AY531586.1 Indian Ocean hydrothermal vent clone SF_C23-F10 prokMSA_id:114072 AB189697.1 termite gut homogenate clone Tc-66 prokMSA_id:114222 AY542555.1 Gulf Mexico seafloor sediment clone GoM GB425 68B-27 2.43.3.4.3.1.10062 OTU 10 seqs prokMSA_id:67777 AF420366.1 hydrothermal sediment clone AF420366 prokMSA_id:73292 AF420368.1 hydrothermal sediment clone AF420368 prokMSA_id:77746 AJ535242.1 marine sediment above hydrate ridge clone Hyd01-30 proteobacterium prokMSA_id:77788 AJ535230.1 marine sediment above hydrate ridge clone Hyd01-07 proteobacterium prokMSA_id:78284 AJ535218.1 marine sediment above hydrate ridge clone Hyd01-17 proteobacterium prokMSA_id:78398 AJ535241.1 marine sediment above hydrate ridge clone Hyd24-11 proteobacterium prokMSA_id:78851 AY177789.1 Antarctic sediment clone SB1_46 prokMSA_id:104747 AB121098.1 cold seep sediment clone JS624-10 prokMSA_id:105894 AY355297.1 epibiontic clone C11-G5 prokMSA_id:113327 AB189381.1 cold seep sediment clone JT75-327 2.43.3.4.3.1.10097 OTU 1 seq prokMSA_id:79377 AB100004.1 inactive deep-sea hydrothermal vent chimneys clone IndB2-42 2.43.3.4.3.1.10107 OTU 1 seq prokMSA_id:77940 AJ535243.1 marine sediment above hydrate ridge clone Hyd24-30 proteobacterium 2.43.3.4.3.1.10133 OTU 1 seq prokMSA_id:42347 AF132868.1 Desulfobulbus sp. 'McCal 25m' str. McCal 25m 2.43.3.4.3.1.10159 OTU 1 seq prokMSA_id:46630 AB069774.1 sulfate-reducing clone:39B clone 39B 2.43.3.4.3.1.10172 OTU 2 seqs prokMSA_id:41043 AY005037.1 subgingival dental plaque clone R004 prokMSA_id:47698 AY005036.1 subgingival dental plaque clone CH031 2.43.3.4.3.1.10187 OTU 1 seq prokMSA_id:62717 AF507840.1 Mono Lake at depth 23 m station 6 July 2000 clone ML623J-57 proteobacterium 2.43.3.4.3.1.10199 OTU 1 seq prokMSA_id:10818 AF099061.1 Desulfotalea arctica str. LSv514 2.43.3.4.3.1.10200 OTU 2 seqs prokMSA_id:10819 AF099062.1 Desulfotalea psychrophila prokMSA_id:108368 NC_006138.1 Desulfotalea psychrophila LSv54 2.43.3.4.3.1.10202 OTU 1 seq prokMSA_id:47136 AF424206.1 clone MERTZ_2CM_141 2.43.3.4.3.1.10235 OTU 1 seq prokMSA_id:10793 AF050536.1 contaminated aquifer clone WCHB1-67 2.43.3.4.3.1.10236 OTU 1 seq prokMSA_id:10794 Y13672.1 Desulfocapsa sulfexigens str. SB164P1 2.43.3.4.3.1.10242 OTU 1 seq prokMSA_id:78670 AY177798.1 Antarctic sediment clone SB1_88 2.43.3.4.3.1.10258 OTU 1 seq prokMSA_id:71200 AF354148.1 marine methane seep clone 1431 2.43.3.4.3.1.10299 OTU 1 seq prokMSA_id:44862 AF121089.1 obtained marine fluids near Cascadia Margin clone ODPB-B4 2.43.3.4.3.1.10300 OTU 9 seqs prokMSA_id:10792 X95181.1 Desulfocapsa thiozymogenes str. Bra2 prokMSA_id:10797 AJ389623.1 Switzerland:Ticino clone 113 prokMSA_id:10800 AJ389626.1 Switzerland:Ticino clone 282 prokMSA_id:10801 AJ389627.1 Switzerland:Ticino clone 330 prokMSA_id:10802 AJ389628.1 Switzerland:Ticino clone 348 prokMSA_id:10803 AJ389629.1 Switzerland:Ticino clone 368 prokMSA_id:69671 AJ511275.1 Desulfocapsa sp. Cad626 prokMSA_id:81455 AJ548924.1 Desulfocapsa sp. clone BIOEST-35 prokMSA_id:90670 AY327185.1 clone ZB1 2.43.3.4.3.1.10303 OTU 1 seq prokMSA_id:34639 AF424189.1 clone MERTZ_2CM_46 2.43.3.4.3.1.10316 OTU 1 seq prokMSA_id:26125 AF469372.1 clone 33-PA52B00 2.43.3.4.3.1.10328 OTU 2 seqs prokMSA_id:10787 X95180.1 Desulfobulbus elongatus prokMSA_id:77552 AF482433.1 granular sludge clone R1p15 2.43.3.4.3.1.10329 OTU 1 seq prokMSA_id:39590 AB022619.1 SA82 clone 2.43.3.4.3.1.10332 OTU 7 seqs prokMSA_id:10815 AF099058.1 Psychrophilic sulfate-reducing isolate str. LSv53 bacterium prokMSA_id:10816 AF099059.1 Psychrophilic sulfate-reducing isolate str. LSv23 bacterium prokMSA_id:10817 AF099060.1 Psychrophilic sulfate-reducing isolate str. LSv24 bacterium prokMSA_id:10821 AB015241.1 deepest cold-seep area Japan Trench clone JTB20 proteobacterium prokMSA_id:10828 AJ241014.1 Norway:(Svalbard)Hornsund clone Sva0632 prokMSA_id:78896 AY177797.1 Antarctic sediment clone SB1_78 prokMSA_id:78959 AY177802.1 Antarctic sediment clone SB4_58 2.43.3.4.3.1.10355 OTU 1 seq prokMSA_id:10811 AJ237602.1 Desulfobacterium catecholicum str. DSM 3882 2.43.3.4.3.1.10367 OTU 1 seq prokMSA_id:10820 AB015588.1 deep-sea sediment clone BD7-15 2.43.3.4.3.1.10371 OTU 2 seqs prokMSA_id:77808 AJ535238.1 marine sediment above hydrate ridge clone Hyd24-21 proteobacterium prokMSA_id:78211 AJ535220.1 marine sediment above hydrate ridge clone Hyd01-14 proteobacterium 2.43.3.4.3.1.10377 OTU 2 seqs prokMSA_id:10822 AJ240982.1 Norway:(Svalbard)Hornsund clone Sva0113 prokMSA_id:10826 AJ240995.1 Norway:(Svalbard)Hornsund clone Sva0754 2.43.3.4.3.1.10378 OTU 1 seq prokMSA_id:10827 AJ241013.1 Norway:(Svalbard)Hornsund clone Sva0999 2.43.3.4.3.1.9660 OTU 2 seqs prokMSA_id:10809 L42613.1 Desulforhopalus vacuolatus prokMSA_id:10814 AF099057.1 Desulforhopalus sp. str. LSv20 2.43.3.4.3.1.9673 OTU 1 seq prokMSA_id:10834 AB013265.1 deep-sea sediment clone NKB13 2.43.3.4.3.1.9674 OTU 1 seq prokMSA_id:21964 AF424227.1 clone MERTZ_2CM_340 2.43.3.4.3.1.9695 OTU 3 seqs prokMSA_id:10796 AJ389622.1 Switzerland:Ticino clone 22 prokMSA_id:10798 AJ389624.1 Switzerland:Ticino clone 141 prokMSA_id:40598 AJ307943.1 derived microbial 'pearl'- community clone sipK93 2.43.3.4.3.1.9705 OTU 1 seq prokMSA_id:77760 AJ535237.1 marine sediment above hydrate ridge clone Hyd01-n proteobacterium 2.43.3.4.3.1.9734 OTU 4 seqs prokMSA_id:61880 AF449229.1 Riftia pachyptila's tube clone R103-B13 prokMSA_id:61881 AF449228.1 Riftia pachyptila's tube clone R103-B27 prokMSA_id:61882 AF449227.1 Riftia pachyptila's tube clone R103-B54 prokMSA_id:61884 AF449226.1 Riftia pachyptila's tube clone R103-B53 2.43.3.4.3.1.9739 OTU 2 seqs prokMSA_id:77619 AJ535252.1 gas hydrate clone Hyd89-51 prokMSA_id:78189 AJ535234.1 marine sediment above hydrate ridge clone Hyd89-08 proteobacterium 2.43.3.4.3.1.9743 OTU 1 seq prokMSA_id:70322 AF200962.1 sulfate-reducer Svalbard-sediments Arctic Ocean isolate str. LSv22 bacterium 2.43.3.4.3.1.9746 OTU 1 seq prokMSA_id:74052 AF354166.1 marine methane seep clone 1519 2.43.3.4.3.1.9756 OTU 1 seq prokMSA_id:10825 AJ240994.1 Norway:(Svalbard)Hornsund clone Sva0443 2.43.3.4.3.1.9775 OTU 1 seq prokMSA_id:10829 U12253.1 Desulfobulbus rhabdoformis 2.43.3.4.3.1.9807 OTU 2 seqs prokMSA_id:10830 U85473.1 Desulfobulbus sp. str. BG25 prokMSA_id:87670 AB110550.2 harbor sediment Japan isolate str. Pro16 2.43.3.4.3.1.9822 OTU 1 seq prokMSA_id:47606 AF424221.1 clone MERTZ_2CM_260 2.43.3.4.3.1.9824 OTU 1 seq prokMSA_id:10837 AJ241011.1 Norway:(Svalbard)Hornsund clone Sva0631 2.43.3.4.3.1.9831 OTU 1 seq prokMSA_id:10839 X99707.1 Desulfofustis glycolicus 2.43.3.4.3.1.9837 OTU 1 seq prokMSA_id:34365 AF364912.1 clone clB15 2.43.3.4.3.1.9856 OTU 5 seqs prokMSA_id:10790 AJ240966.1 Norway:(Svalbard)Hornsund clone Sva1035 prokMSA_id:10791 AJ240984.1 Norway:(Svalbard)Hornsund clone Sva1041 prokMSA_id:10833 AB015515.1 deep-sea sediment clone BD1-2 prokMSA_id:10836 AJ240978.1 Norway:(Svalbard)Hornsund clone Sva0103 prokMSA_id:112102 AY771954.1 marine surface sediment clone SK4 2.43.3.4.3.1.9857 OTU 1 seq prokMSA_id:10840 AJ007373.1 environmental clone directly 2.43.3.4.3.1.9891 OTU 1 seq prokMSA_id:10788 AJ012591.1 related to Desulfobulbus 2.43.3.4.3.1.9901 OTU 1 seq prokMSA_id:22073 AF132867.1 Desulfobulbus sp. 'Ace 16m' str. Ace 16m 2.43.3.4.3.1.9907 OTU 1 seq prokMSA_id:80324 AY193139.1 marine sediment clone Bol88 2.43.3.4.3.1.9923 OTU 1 seq prokMSA_id:44052 AJ296571.1 uranium mining mill tailing clone GR-Sh2-18 GR-Sh2-18 2.43.3.4.3.1.9931 OTU 1 seq prokMSA_id:24902 AF224819.1 clone Car93rb 2.43.3.4.3.1.9952 OTU 1 seq prokMSA_id:81065 AY216457.1 temperate estuarine mud clone KM85 2.43.3.4.4 Nitrospinaceae 6 seqs 2.43.3.4.4.1 sf_1 4 seqs 2.43.3.4.4.1.1082 OTU 1 seq prokMSA_id:43480 AF285619.1 clone Car184f 2.43.3.4.4.1.444 OTU 1 seq prokMSA_id:1673 L35504.1 Nitrospina gracilis 2.43.3.4.4.1.447 OTU 1 seq prokMSA_id:1675 AB015560.1 deep-sea sediment clone BD4-10 2.43.3.4.4.1.580 OTU 1 seq prokMSA_id:19976 AF355044.1 marine clone Arctic97A-12 2.43.3.4.4.2 sf_2 2 seqs 2.43.3.4.4.2.594 OTU 2 seqs prokMSA_id:24687 AJ296568.1 uranium mining mill tailing clone GR-296.II.52 GR-296.I.52 prokMSA_id:28255 AJ301566.1 Germany:Schlema/Alberoda clone GR-296.I.86 2.43.3.4.5 Unclassified 8 seqs 2.43.3.4.5.1 sf_3 7 seqs 2.43.3.4.5.1.10154 OTU 1 seq prokMSA_id:84621 AY226308.1 brine water Discovery Mediterranean Sea clone DBBB-70 2.43.3.4.5.1.431 OTU 1 seq prokMSA_id:59729 AY133466.1 coastal Antarctic sediment clone BB2_223 2.43.3.4.5.1.468 OTU 1 seq prokMSA_id:1717 AJ241004.1 marine sediment clone Sva0515 2.43.3.4.5.1.9813 OTU 3 seqs prokMSA_id:57453 AJ441235.1 Paralvinella palmiformis mucus secretions clone P. palm 205 proteobacterium prokMSA_id:67797 AF420340.1 hydrothermal sediment clone AF420340 prokMSA_id:70385 AF420339.1 hydrothermal sediment clone AF420339 2.43.3.4.5.1.9960 OTU 1 seq prokMSA_id:43402 AF224777.1 clone Car102rb 2.43.3.4.5.2 sf_4 1 seq 2.43.3.4.5.2.9951 OTU 1 seq prokMSA_id:63250 AF523973.1 forested wetland clone FW13 2.43.3.5 Desulfovibrionales 171 seqs 2.43.3.5.1 Desulfohalobiaceae 7 seqs 2.43.3.5.1.1 sf_1 7 seqs 2.43.3.5.1.1.10042 OTU 1 seq prokMSA_id:10400 U48244.1 Desulfohalobium retbaense 2.43.3.5.1.1.10043 OTU 1 seq prokMSA_id:10401 X99235.1 Desulfohalobium retbaense str. HR100 (DSM 5692T) 2.43.3.5.1.1.10044 OTU 1 seq prokMSA_id:10402 X80922.1 Delta proteobacterium 2.43.3.5.1.1.10052 OTU 1 seq prokMSA_id:10404 X99234.1 Desulfonatronovibrio hydrogenovorans 2.43.3.5.1.1.10069 OTU 2 seqs prokMSA_id:75971 AY164384.1 hypersaline anoxic basin; brine interface Bannock Mediterranean Sea clone BLIB-74 prokMSA_id:83169 AY226213.1 brine water L'Atalante Mediterranean Sea clone ABBB-52 2.43.3.5.1.1.9894 OTU 1 seq prokMSA_id:74638 AF524933.1 Desulfonauticus submarinus str. 6N 2.43.3.5.2 Desulfomicrobiaceae 31 seqs 2.43.3.5.2.1 sf_1 31 seqs 2.43.3.5.2.1.10079 OTU 10 seqs prokMSA_id:10412 X95570.1 Bacterial sp. prokMSA_id:10414 AJ237604.1 Desulfomicrobium macestii str. DSM 4194 sulfide spring prokMSA_id:10415 AF132738.1 Desulfomicrobium hypogeium str. CN- prokMSA_id:17898 AJ277894.1 Desulfomicrobium baculatum str. DSM 4028T prokMSA_id:21055 AF228124.2 Desulfomicrobium apsheronum str. Ac3.2 prokMSA_id:21280 AJ277896.1 Desulfomicrobium baculatum str. DSM 1742 prokMSA_id:33526 AJ277886.1 Desulfomicrobium escambiense str. DSM 10707T prokMSA_id:64335 AF443593.1 Desulfomicrobium sp. ' +' str. + prokMSA_id:108443 AY586397.1 fatty acid-degrading consortium clone FA-PB9 prokMSA_id:108564 AY570692.1 Desulfomicrobium sp. Bsl6 2.43.3.5.2.1.10225 OTU 11 seqs prokMSA_id:23777 AJ251623.1 Desulfomicrobium orale str. DSM12838 prokMSA_id:30927 AJ251628.1 Desulfomicrobium orale str. NY676 prokMSA_id:31560 AJ251624.1 Desulfomicrobium orale str. NY679 prokMSA_id:69810 AY083023.1 sulfate-reducing habitat clone P4-16 prokMSA_id:69839 AJ251627.1 Desulfomicrobium orale str. NY683 prokMSA_id:70990 AY083022.1 sulfate-reducing habitat clone P1-1 prokMSA_id:71073 AY083019.1 sulfate-reducing habitat clone P4-14 prokMSA_id:71263 AY083021.1 sulfate-reducing habitat clone P4-17 prokMSA_id:71904 AY083020.1 sulfate-reducing habitat clone P4-15 prokMSA_id:73344 AJ251629.1 Desulfomicrobium orale str. NY677 prokMSA_id:73693 AY083018.1 sulfate-reducing habitat clone P4-13 2.43.3.5.2.1.10312 OTU 1 seq prokMSA_id:30749 AF364917.1 clone clB27 2.43.3.5.2.1.10314 OTU 1 seq prokMSA_id:10421 U02469.1 "Desulfomicrobium escambium" 2.43.3.5.2.1.10370 OTU 8 seqs prokMSA_id:10413 X99505.1 Desulfomicrobium sp. str. STL8 prokMSA_id:10418 AF030438.1 Desulfomicrobium baculatum prokMSA_id:10419 U64865.1 Desulfomicrobium apsheronum prokMSA_id:50942 AF131233.1 Desulfomicrobium sp. 'Bendigo B' str. strain B 'Bendigo prokMSA_id:72167 AF280859.1 bioreactor clone mle1-31 prokMSA_id:105526 AY604056.1 Chuniespoort group dolomite at 896 meters depth clone DR9IPCB16SCT4 prokMSA_id:108486 AY570609.1 -temperature biodegraded Canadian oil reservoir clone PL-23B5 prokMSA_id:108519 AY570654.1 -temperature biodegraded Canadian oil reservoir clone PL-21B3 2.43.3.5.3 Desulfovibrionaceae 127 seqs 2.43.3.5.3.1 sf_1 127 seqs 2.43.3.5.3.1.10009 OTU 1 seq prokMSA_id:30569 AF371871.1 phylotype OTU-244 swine intestine clone p-2918-6C5 2.43.3.5.3.1.10016 OTU 1 seq prokMSA_id:78137 AB089110.1 termite gut homogenate clone Rs-N35 proteobacterium 2.43.3.5.3.1.10019 OTU 2 seqs prokMSA_id:10506 U32578.1 "Desulfovibrio acrylicus" prokMSA_id:10508 AF090830.1 Desulfovibrio sp. str. TBP-1 2.43.3.5.3.1.10022 OTU 1 seq prokMSA_id:77555 AF482438.1 granular sludge clone R2b32 2.43.3.5.3.1.10041 OTU 1 seq prokMSA_id:23507 AB062810.1 termite gut homogenate clone BCf11-19 2.43.3.5.3.1.10051 OTU 5 seqs prokMSA_id:10505 X86689.1 Desulfovibrio sp. prokMSA_id:34844 AF131234.1 Desulfovibrio sp. 'Bendigo ' str. strain prokMSA_id:36540 AF418179.1 Desulfovibrio vulgaris str. DSM 644 prokMSA_id:99419 AE017317.1 Desulfovibrio subsp. vulgaris str. Hildenborough prokMSA_id:99724 AE017319.1 Desulfovibrio subsp. vulgaris str. Hildenborough 2.43.3.5.3.1.10059 OTU 1 seq prokMSA_id:56227 AF458778.1 Desulfovibrio hydrothermalis str. AM13 2.43.3.5.3.1.10063 OTU 3 seqs prokMSA_id:10456 AF193026.1 Desulfovibrio sp. str. Mlhm prokMSA_id:10458 AJ012593.1 isolate related to Desulfovibrio prokMSA_id:51153 AF407202.1 MCB-contaminated groundwater-treating reactor clone GIF11 2.43.3.5.3.1.10071 OTU 9 seqs prokMSA_id:10515 M34113.1 Desulfovibrio desulfuricans prokMSA_id:10516 AF098671.1 Desulfovibrio desulfuricans prokMSA_id:10526 X93146.1 Desulfovibrio sp. prokMSA_id:22674 AF427913.1 RFLP type 1; TCE-dechlorinating consortium ANAS I clone 9E prokMSA_id:45268 AF192153.1 Desulfovibrio desulfuricans Essex prokMSA_id:48934 AF354664.1 Desulfovibrio desulfuricans str. CSN prokMSA_id:50393 AJ415573.1 Desulfovibrio desulfuricans str. 0104 959 prokMSA_id:72418 AJ251631.1 Desulfovibrio sp. colonic FD1 prokMSA_id:81316 AY217428.1 TCE-dechlorinating microbial community clone 12D 2.43.3.5.3.1.10075 OTU 3 seqs prokMSA_id:10512 AF056088.1 Desulfovibrio sp. str. ABHU1SB prokMSA_id:10513 AF056089.1 Desulfovibrio sp. str. ABHU1SBfatS prokMSA_id:10514 AF056090.1 Desulfovibrio sp. str. ABHU2SB 2.43.3.5.3.1.10077 OTU 3 seqs prokMSA_id:10489 U06423.1 Ileal symbiont intracellularis prokMSA_id:10490 U30147.1 Lawsonia intracellularis prokMSA_id:10491 L15739.1 str isolate 1482/89 2.43.3.5.3.1.10105 OTU 1 seq prokMSA_id:32796 AF332718.1 granular sludge clone UASB_brew_B82 2.43.3.5.3.1.10138 OTU 1 seq prokMSA_id:19551 AF227984.1 Desulfovibrio mexicanus str. DSM 13116; Lup1 2.43.3.5.3.1.10139 OTU 12 seqs prokMSA_id:10498 X87409.1 Desulfovibrio termitidis prokMSA_id:10500 X93147.1 Desulfovibrio sp. prokMSA_id:10502 Z24450.1 Desulfovibrio longus prokMSA_id:26806 AJ295669.1 Desulfovibrio sp. IrT-JG1-71 prokMSA_id:27402 AY059411.1 Desulfovibrio sp. str. R2 prokMSA_id:39982 AF273083.1 Desulfovibrio oryzae str. DDv prokMSA_id:46889 AJ295670.1 Desulfovibrio sp. IrT-JG1-58 prokMSA_id:71137 AJ295679.1 Desulfovibrio sp. str. JG5 prokMSA_id:71502 AJ295678.1 Desulfovibrio sp. str. JG1 prokMSA_id:108134 AY770382.1 Desulfovibrio sp. str. A2 prokMSA_id:112741 AY928661.1 Desulfovibrio sp. str. A1 prokMSA_id:113284 AY928662.1 Desulfovibrio sp. str. A4 2.43.3.5.3.1.10141 OTU 8 seqs prokMSA_id:16323 AJ300521.1 sulphate reducing clone DSV-DSa99-5 prokMSA_id:24145 AJ300519.1 sulphate reducing clone DSV-DSa99-3 prokMSA_id:28436 AJ300517.1 sulphate reducing clone DSV-DSa99-1 prokMSA_id:39060 AJ300522.1 sulphate reducing clone DSV-DSa99-6 prokMSA_id:51837 AJ300523.1 sulphate reducing clone DSV-DSa99-7 prokMSA_id:52050 AJ300520.1 sulphate reducing clone DSV-DSa99-4 prokMSA_id:59875 AB077452.1 sediment swampland clone sediment-10 prokMSA_id:59879 AB077445.1 sediment swampland clone sediment-3 2.43.3.5.3.1.10149 OTU 4 seqs prokMSA_id:10436 X99237.1 Desulfovibrio halophilus str. DSM 5663T prokMSA_id:10437 U48243.1 Desulfovibrio halophilus prokMSA_id:10438 U33316.1 Desulfovibrio oxyclinae prokMSA_id:10439 U53463.1 Desulfovibrio sp. 2.43.3.5.3.1.10189 OTU 1 seq prokMSA_id:70595 X91430.1 Aespoe hard rock 10 626 m be ground surface clone group A7hq 2.43.3.5.3.1.10192 OTU 1 seq prokMSA_id:68469 AB081579.1 Desulfovibrio sp. str. A45 2.43.3.5.3.1.10201 OTU 2 seqs prokMSA_id:10507 X93994.1 Desulfovibrio sp. prokMSA_id:28397 Y11984.3 Desulfovibrio alaskensis str. NCIMB 13491 2.43.3.5.3.1.10212 OTU 1 seq prokMSA_id:10510 X93148.1 Desulfovibrio sp. str. KRS2 2.43.3.5.3.1.10214 OTU 1 seq prokMSA_id:30839 AF230530.1 Desulfovibrio dechloracetivorans 2.43.3.5.3.1.10241 OTU 3 seqs prokMSA_id:10480 U31080.1 Desulfovibrio gabonensis prokMSA_id:26629 Y09504.2 Desulfovibrio indonesiensis prokMSA_id:37664 AY062930.1 Desulfovibrio sp. str. Met 82 2.43.3.5.3.1.10244 OTU 1 seq prokMSA_id:66105 AB074948.1 clone:KB47 clone KB47 2.43.3.5.3.1.10248 OTU 1 seq prokMSA_id:68874 AF418170.1 Desulfovibrio giganteus str. DSM 4370 2.43.3.5.3.1.10262 OTU 4 seqs prokMSA_id:54085 AF228127.2 Desulfovibrio sp. str. Ac5.2 prokMSA_id:87245 AB110541.1 harbor sediment Japan isolate str. MSL79 prokMSA_id:104557 AY274444.1 Desulfovibrio sp. str. HS2 prokMSA_id:111852 AJ132721.1 deep-sea hydrothermal chimney clone CHA3-114 2.43.3.5.3.1.10263 OTU 1 seq prokMSA_id:80009 AJ544687.2 Desulfovibrio brasiliensis str. LVform1 2.43.3.5.3.1.10269 OTU 1 seq prokMSA_id:46775 AY038515.1 clone CD4C5 2.43.3.5.3.1.10291 OTU 1 seq prokMSA_id:26467 AF376401.1 chicken cecum mucus clone 2.43.3.5.3.1.10292 OTU 3 seqs prokMSA_id:10519 Y12254.1 Desulfovibrio intestinalis prokMSA_id:33199 AF192154.1 Desulfovibrio subsp. desulfuricans str. MB; ATCC27774 subsp. prokMSA_id:93874 AB111106.1 iron-reducing clone Core-3 2.43.3.5.3.1.10318 OTU 1 seq prokMSA_id:10429 X95230.1 deep subsurface clone Aspo2 2.43.3.5.3.1.10339 OTU 1 seq prokMSA_id:74366 AF364918.1 clone clB03 2.43.3.5.3.1.10349 OTU 1 seq prokMSA_id:10442 Y18049.1 Desulfovibrio zosterae 2.43.3.5.3.1.10354 OTU 1 seq prokMSA_id:10445 U53462.1 "Desulfovibrio bastinii" 2.43.3.5.3.1.10356 OTU 2 seqs prokMSA_id:23150 AF228115.1 Desulfovibrio sp. str. La1.3 prokMSA_id:32600 AF228114.1 Desulfovibrio sp. str. La1.2 2.43.3.5.3.1.10361 OTU 3 seqs prokMSA_id:10511 U42221.1 Desulfovibrio fairfieldensis prokMSA_id:25583 AF192155.1 Desulfovibrio sp. str. D4 prokMSA_id:49692 AJ251630.1 Desulfovibrio sp. DSM12803 2.43.3.5.3.1.10363 OTU 8 seqs prokMSA_id:55267 AB077468.1 crude Japanese oil reservoir clone oil-15 prokMSA_id:59860 AB077465.1 crude Japanese oil reservoir clone oil-12 prokMSA_id:59861 AB077467.1 crude Japanese oil reservoir clone oil-14 prokMSA_id:59863 AB077464.1 crude Japanese oil reservoir clone oil-11 prokMSA_id:59867 AB077461.1 crude Japanese oil reservoir clone oil-8 prokMSA_id:59870 AB077458.1 crude Japanese oil reservoir clone oil-3 prokMSA_id:59871 AB077457.1 crude Japanese oil reservoir clone oil-2 prokMSA_id:59873 AB077456.1 crude Japanese oil reservoir clone oil-1 2.43.3.5.3.1.10376 OTU 1 seq prokMSA_id:10454 AF067964.1 Desulfovibrio aminophilus str. ALA-3 2.43.3.5.3.1.9670 OTU 1 seq prokMSA_id:41341 AF058011.1 PCB-dechlorinating enrichment 2.43.3.5.3.1.9680 OTU 1 seq prokMSA_id:10461 D43944.2 Desulfovibrio magneticus 2.43.3.5.3.1.9683 OTU 1 seq prokMSA_id:10462 AF053752.1 Desulfovibrio burkinabensis 2.43.3.5.3.1.9684 OTU 1 seq prokMSA_id:10463 U85468.1 Desulfovibrio sp. str. BG6 2.43.3.5.3.1.9689 OTU 1 seq prokMSA_id:10468 AJ012594.1 isolate related to Desulfovibrio 2.43.3.5.3.1.9690 OTU 1 seq prokMSA_id:10469 AF177276.1 Desulfovibrio inopinatus str. HHQ 20 2.43.3.5.3.1.9693 OTU 1 seq prokMSA_id:71864 AF418174.1 Desulfovibrio baarsii str. DSM 2075 2.43.3.5.3.1.9709 OTU 1 seq prokMSA_id:78153 AB089104.1 termite gut homogenate clone Rs-N31 proteobacterium 2.43.3.5.3.1.9711 OTU 2 seqs prokMSA_id:10427 U90726.1 Desulfovibrio profundus str. DSM 11384 500-1 prokMSA_id:72826 AF418172.1 Desulfovibrio profundus str. DSM 11384 2.43.3.5.3.1.9713 OTU 2 seqs prokMSA_id:10455 AF109470.1 Desulfovibrio sp. zt31 str. zt3l prokMSA_id:82207 AY214190.1 benzene-contaminated groundwater clone ZZ14C2 2.43.3.5.3.1.9714 OTU 1 seq prokMSA_id:10471 AF109469.3 Desulfovibrio sp. str. zt10e 2.43.3.5.3.1.9717 OTU 1 seq prokMSA_id:10473 Y17764.1 Desulfovibrio sulfodismutans str. ThAcO1 2.43.3.5.3.1.9721 OTU 1 seq prokMSA_id:10474 U81725.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinHA40 2.43.3.5.3.1.9722 OTU 1 seq prokMSA_id:10478 X99236.1 Desulfovibrio africanus 2.43.3.5.3.1.9745 OTU 1 seq prokMSA_id:10517 U82813.1 Bilophila wadsworthia str. RZATAU 2.43.3.5.3.1.9747 OTU 1 seq prokMSA_id:10518 AF056091.1 Desulfovibrio sp. str. UNSW3caefatS 2.43.3.5.3.1.9750 OTU 1 seq prokMSA_id:10485 X99504.1 Desulfovibrio sp. str. STL6 2.43.3.5.3.1.9753 OTU 1 seq prokMSA_id:10486 X99501.1 Desulfovibrio sp. str. STL1 2.43.3.5.3.1.9789 OTU 1 seq prokMSA_id:43170 AF228128.2 Desulfovibrio sp. str. Pr1.2 2.43.3.5.3.1.9792 OTU 1 seq prokMSA_id:44516 AF447131.1 clone TDC-006 2.43.3.5.3.1.9826 OTU 1 seq prokMSA_id:78002 AB089108.2 termite gut homogenate clone Rs-M72 proteobacterium 2.43.3.5.3.1.9836 OTU 1 seq prokMSA_id:34507 AF423185.1 Toluene-degrading methanogenic consortium clone Eub 5 consortium 2.43.3.5.3.1.9854 OTU 1 seq prokMSA_id:51052 AF364916.1 clone clB80 2.43.3.5.3.1.9980 OTU 3 seqs prokMSA_id:51535 AF192152.1 Desulfomonas pigra prokMSA_id:52234 AF371870.1 phylotype OTU-5 swine intestine clone p-223-o5 prokMSA_id:105896 AY452006.1 human intestine clone Muc3-17 2.43.3.5.3.1.9987 OTU 2 seqs prokMSA_id:10470 AF053751.1 Desulfovibrio alcoholovorans str. DSM 5433 prokMSA_id:10475 AJ012592.1 isolate related to Desulfovibrio 2.43.3.5.3.1.9988 OTU 2 seqs prokMSA_id:10448 AF050100.1 Desulfovibrio senezii str. CVL; DSM 8436 prokMSA_id:10449 U52959.1 Desulfovibrio sp. str. CVH2 2.43.3.5.4 Unclassified 6 seqs 2.43.3.5.4.1 sf_1 6 seqs 2.43.3.5.4.1.10229 OTU 1 seq prokMSA_id:48166 AF295109.2 marine anaerobic clone 90d4 2.43.3.5.4.1.10338 OTU 3 seqs prokMSA_id:10408 Y14594.1 Desulfonatronum lacustre prokMSA_id:24344 AF373920.1 Desulfonatronum thiodismutans str. MLF1 prokMSA_id:73563 AF418171.1 Desulfonatronum lacustre str. DSM 10312 2.43.3.5.4.1.10340 OTU 1 seq prokMSA_id:43622 AF220316.1 temperature petroleum reservoir clone O11G2 2.43.3.5.4.1.9828 OTU 1 seq prokMSA_id:78006 AB089109.1 termite gut homogenate clone Rs-M89 proteobacterium 2.43.3.6 Desulfurellales 7 seqs 2.43.3.6.1 Desulfurellaceae 7 seqs 2.43.3.6.1.1 sf_1 7 seqs 2.43.3.6.1.1.10144 OTU 1 seq prokMSA_id:51780 Y18292.1 Hippea maritima str. MH2T 2.43.3.6.1.1.10317 OTU 5 seqs prokMSA_id:10570 X72768.1 Desulfurella acetivorans prokMSA_id:10571 Y16943.1 Desulfurella multipotens str. DSM 8415 prokMSA_id:10572 Y16942.1 Desulfurella propionica str. U-8 (DSM 10410) prokMSA_id:10573 Y16941.1 Desulfurella kamchatkensis str. K-119 (DSM 10409) prokMSA_id:47020 AF232926.1 United Kingdom: Montserrat geothermal springs clone MS10 proteobacterium 2.43.3.6.1.1.9855 OTU 1 seq prokMSA_id:45576 AF325180.1 hot spring clone B45 2.43.3.7 Desulfuromonadales 66 seqs 2.43.3.7.1 Desulfuromonaceae 37 seqs 2.43.3.7.1.1 sf_1 37 seqs 2.43.3.7.1.1.10015 OTU 1 seq prokMSA_id:54232 AF424230.1 clone MERTZ_0CM_59 2.43.3.7.1.1.10020 OTU 1 seq prokMSA_id:76391 AJ519664.1 uranium mill tailings soil sample clone GuBH2-AG-114 proteobacterium 2.43.3.7.1.1.10026 OTU 3 seqs prokMSA_id:79310 AY185328.1 Desulfuromonas sp. clone AKS67 prokMSA_id:103899 AB186848.1 polychlorinated dioxin dechlorinating microcosm clone TSAC13 prokMSA_id:107087 AY185329.1 Desulfuromonas sp. clone AKS68 2.43.3.7.1.1.10081 OTU 2 seqs prokMSA_id:41059 AF357915.2 Desulfuromonas michiganensis str. BB1 prokMSA_id:51450 AF357914.2 Desulfuromonas michiganensis str. BRS1 2.43.3.7.1.1.10095 OTU 1 seq prokMSA_id:78716 AY177793.1 Antarctic sediment clone LH2_14 2.43.3.7.1.1.10126 OTU 1 seq prokMSA_id:10658 Y17712.1 Malonomonas rubra str. GraMal1 2.43.3.7.1.1.10131 OTU 5 seqs prokMSA_id:10660 X79412.1 Desulfuromusa bakii prokMSA_id:10692 X79415.1 Desulfuromusa succinoxidans prokMSA_id:10695 X79414.1 Desulfuromusa kysingii prokMSA_id:18366 AY062868.1 similar to Desulfuromonas species clone d1 proteobacterium prokMSA_id:102757 AY187309.1 Desulfuromusa sp. str. S1 2.43.3.7.1.1.10161 OTU 1 seq prokMSA_id:10662 U28172.1 "Desulfuromonas palmitatis" 2.43.3.7.1.1.10166 OTU 1 seq prokMSA_id:10714 X70954.1 Pelobacter propionicus 2.43.3.7.1.1.10307 OTU 1 seq prokMSA_id:35822 AY062878.1 environmental electrode surface clone d13 2.43.3.7.1.1.10324 OTU 2 seqs prokMSA_id:10683 X79413.1 Pelobacter carbinolicus prokMSA_id:10685 U23141.1 Pelobacter carbinolicus 2.43.3.7.1.1.9728 OTU 13 seqs prokMSA_id:10663 AJ240980.1 Norway:(Svalbard)Hornsund clone Sva1034 prokMSA_id:10664 AJ240983.1 Norway:(Svalbard)Hornsund clone Sva1033 prokMSA_id:10665 AJ241000.1 Norway:(Svalbard)Hornsund clone Sva0566 prokMSA_id:10666 AJ241010.1 Norway:(Svalbard)Hornsund clone Sva0556 prokMSA_id:28844 AF369728.1 South Korea: mud flat Sunchon Bay Chunnam province clone 296 prokMSA_id:48291 AJ271656.1 Pelobacter sp. A3b3 prokMSA_id:78867 AY177790.1 Antarctic sediment clone SB2_81 prokMSA_id:78882 AY177801.1 Antarctic sediment clone SB2_94 prokMSA_id:80275 AY193143.1 marine sediment clone Bol29 prokMSA_id:93664 AY361922.1 clone P8-GEN-10 prokMSA_id:103018 AY515473.1 bulk water German Wadden Sea October 1999 clone GWS-K17 prokMSA_id:111551 AY771955.1 marine surface sediment clone SL17 prokMSA_id:112031 AY771969.1 marine surface sediment clone SQ30 2.43.3.7.1.1.9779 OTU 1 seq prokMSA_id:10684 U23140.1 "Desulfuromonas acetexigens" 2.43.3.7.1.1.9783 OTU 1 seq prokMSA_id:10686 X77216.1 Pelobacter acidigallici 2.43.3.7.1.1.9835 OTU 1 seq prokMSA_id:10699 Y11560.1 Desulfuromonas thiophila str. NZ27 (DSMZ 8987) 2.43.3.7.1.1.9853 OTU 1 seq prokMSA_id:16727 AF424187.1 clone MERTZ_2CM_36 2.43.3.7.1.1.9979 OTU 1 seq prokMSA_id:72784 AF420369.1 hydrothermal sediment clone AF420369 2.43.3.7.2 Geobacteraceae 25 seqs 2.43.3.7.2.1 sf_1 25 seqs 2.43.3.7.2.1.10171 OTU 1 seq prokMSA_id:62404 AF529114.1 trichloroethene-contaminated site clone FTLM111 2.43.3.7.2.1.10176 OTU 1 seq prokMSA_id:10717 U62848.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB28 2.43.3.7.2.1.10179 OTU 1 seq prokMSA_id:10719 AJ009485.1 anaerobic TCB-transforming consortium clone SJA-111 2.43.3.7.2.1.10190 OTU 1 seq prokMSA_id:26084 AF447134.1 clone TDC-029 2.43.3.7.2.1.10207 OTU 2 seqs prokMSA_id:10725 AF019928.1 Geobacter sp. str. Ala-5 prokMSA_id:10726 AF019929.1 Geobacter sp. str. Ala-6 2.43.3.7.2.1.10209 OTU 1 seq prokMSA_id:10728 U96917.1 Geobacter bremensis str. Dfr1 2.43.3.7.2.1.10216 OTU 1 seq prokMSA_id:10729 U96918.1 Geobacter pelophilus str. Dfr2 2.43.3.7.2.1.10224 OTU 1 seq prokMSA_id:10733 Y19190.1 Geobacter sp. str. CdA-2 2.43.3.7.2.1.10288 OTU 3 seqs prokMSA_id:10709 L07834.1 Geobacter metallireducens prokMSA_id:22464 AF335182.1 Geobacter grbiciae str. TACP-2 prokMSA_id:29370 AF335183.1 Geobacter grbiciae str. TACP-5 2.43.3.7.2.1.10373 OTU 2 seqs prokMSA_id:62386 AF529129.1 trichloroethene-contaminated site clone FTLpost101 proteobacterium prokMSA_id:75868 AF404348.1 sp. strain clone Geobacter NS1 2.43.3.7.2.1.482 OTU 1 seq prokMSA_id:62399 AF529120.1 trichloroethene-contaminated site clone FTLM205 proteobacterium 2.43.3.7.2.1.9701 OTU 1 seq prokMSA_id:32027 AF223382.1 Trichlorobacter thiogenes 2.43.3.7.2.1.9758 OTU 1 seq prokMSA_id:18006 AF145867.1 Metal-contaminated soil clone K20-79 2.43.3.7.2.1.9827 OTU 1 seq prokMSA_id:48265 AF145810.1 Metal-contaminated soil clone K20-06 2.43.3.7.2.1.9850 OTU 4 seqs prokMSA_id:10735 U13928.1 Geobacter sulfurreducens prokMSA_id:34292 AF422626.1 TCE-sediment clone d006 prokMSA_id:104131 AE017180.1 Geobacter sulfurreducens str. PCA prokMSA_id:108300 NC_002939.4 Geobacter sulfurreducens PCA 2.43.3.7.2.1.9932 OTU 1 seq prokMSA_id:10708 Y19191.1 Geobacter sp. str. CdA-3 2.43.3.7.2.1.9956 OTU 1 seq prokMSA_id:63255 AF523968.1 forested wetland clone FW140 2.43.3.7.2.1.9985 OTU 1 seq prokMSA_id:48355 AY013609.1 sample taken beneath landfill clone BVA59 2.43.3.7.3 Unclassified 4 seqs 2.43.3.7.3.1 sf_1 4 seqs 2.43.3.7.3.1.10076 OTU 1 seq prokMSA_id:60598 AF407700.1 Great Artesian Basin clone G13 2.43.3.7.3.1.10381 OTU 2 seqs prokMSA_id:10781 AF050537.1 contaminated aquifer clone WFeA1-10 prokMSA_id:63265 AF523958.1 forested wetland clone FW133 2.43.3.7.3.1.9791 OTU 1 seq prokMSA_id:37152 AY013647.1 sample taken downstream landfill clone BVB45 landfill 2.43.3.8 Desulfuromonales 6 seqs 2.43.3.8.1 Desulfuromonaceae 5 seqs 2.43.3.8.1.1 sf_1 5 seqs 2.43.3.8.1.1.10129 OTU 1 seq prokMSA_id:23042 AF058009.1 PCB-dechlorinating enrichment 2.43.3.8.1.1.9790 OTU 3 seqs prokMSA_id:50443 AF469370.1 clone 33-PA95B98 prokMSA_id:74843 AJ441215.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 79 proteobacterium prokMSA_id:101417 AY280424.1 exterior deep-sea hydrothermal vent sulfide chimney Juan de Fuca Ridge Pacific Ocean clone 2.43.3.8.1.1.9968 OTU 1 seq prokMSA_id:77161 AF458286.1 Mono Lake California clone 2.43.3.8.2 Unclassified 1 seq 2.43.3.8.2.1 sf_1 1 seq 2.43.3.8.2.1.10197 OTU 1 seq prokMSA_id:10720 AJ009496.1 anaerobic TCB-transforming consortium clone SJA-152 2.43.3.9 EB1021 group 7 seqs 2.43.3.9.1 Unclassified 7 seqs 2.43.3.9.1.1 sf_2 2 seqs 2.43.3.9.1.1.9814 OTU 1 seq prokMSA_id:60592 AF407707.1 Great Artesian Basin clone G55 2.43.3.9.1.1.9829 OTU 1 seq prokMSA_id:76036 AJ518798.1 uranium mining waste pile clone JG37-AG-113 proteobacterium 2.43.3.9.1.2 sf_4 5 seqs 2.43.3.9.1.2.10024 OTU 1 seq prokMSA_id:67799 AF420338.1 hydrothermal sediment clone AF420338 2.43.3.9.1.2.8169 OTU 1 seq prokMSA_id:55388 AF523886.1 forested wetland clone RCP2-54 2.43.3.9.1.2.9741 OTU 1 seq prokMSA_id:76068 AJ518791.1 uranium mining waste pile clone JG37-AG-30 proteobacterium 2.43.3.9.1.2.9884 OTU 1 seq prokMSA_id:63329 AF523885.1 forested wetland clone RCP2-62 2.43.3.9.1.2.9957 OTU 1 seq prokMSA_id:63257 AF523967.1 forested wetland clone FW136 2.43.4 Epsilonproteobacteria 636 seqs 2.43.4.1 Campylobacterales 622 seqs 2.43.4.1.1 Campylobacteraceae 262 seqs 2.43.4.1.1.1 sf_1 4 seqs 2.43.4.1.1.1.10525 OTU 4 seqs prokMSA_id:11227 X67775.1 Campylobacter sputorum prokMSA_id:56624 AF550636.1 Campylobacter sputorum str. LMG 11761 prokMSA_id:57369 AF550638.1 Campylobacter sputorum str. CSP-1 prokMSA_id:57371 AF550635.1 Campylobacter sputorum str. LMG 10388 2.43.4.1.1.2 sf_3 254 seqs 2.43.4.1.1.2.10382 OTU 2 seqs prokMSA_id:11162 L42994.1 Arcobacter species prokMSA_id:106309 AY569293.1 pink microbial mat clone YJQ-18 2.43.4.1.1.2.10383 OTU 1 seq prokMSA_id:11163 AB013832.1 NB1-k clone NB1-k 2.43.4.1.1.2.10387 OTU 1 seq prokMSA_id:11168 Z93998.1 clone T95 2.43.4.1.1.2.10388 OTU 1 seq prokMSA_id:40453 AF468778.1 clone 33-FL74B00 2.43.4.1.1.2.10393 OTU 1 seq prokMSA_id:24279 AJ249226.1 DCE dechlorinating consortium clone DCE10 2.43.4.1.1.2.10394 OTU 1 seq prokMSA_id:11170 Z94000.1 clone T18 2.43.4.1.1.2.10396 OTU 1 seq prokMSA_id:11177 AF142919.1 clone PENDANT-6 2.43.4.1.1.2.10397 OTU 2 seqs prokMSA_id:24487 AB030593.1 groundwater clone 1053 prokMSA_id:35924 AB030592.1 groundwater clone 1006 2.43.4.1.1.2.10400 OTU 1 seq prokMSA_id:11180 AB015529.1 deep-sea sediment clone BD1-29 2.43.4.1.1.2.10401 OTU 1 seq prokMSA_id:22128 AF144693.2 environmental isolate str. FWKO B 2.43.4.1.1.2.10402 OTU 1 seq prokMSA_id:11182 AB015256.1 deepest cold-seep area Japan Trench clone JTB129 proteobacterium 2.43.4.1.1.2.10403 OTU 1 seq prokMSA_id:51261 AF468780.1 clone 33-FL70B00 2.43.4.1.1.2.10410 OTU 1 seq prokMSA_id:70950 AY035822.1 enriched coastal seawater overlying anoxic marine sediment sulfidicus 2.43.4.1.1.2.10419 OTU 1 seq prokMSA_id:60384 AF513455.1 Arcobacter sp. str. LA31B 2.43.4.1.1.2.10422 OTU 2 seqs prokMSA_id:50675 AF441942.1 clone CD11H4 prokMSA_id:51742 AF441940.1 clone CD11H2 2.43.4.1.1.2.10433 OTU 13 seqs prokMSA_id:19566 AJ132726.1 deep-sea hydrothermal chimney clone CHA3-127 prokMSA_id:20461 AJ132728.1 deep-sea hydrothermal chimney clone CHA3-437 prokMSA_id:25911 AJ132727.1 deep-sea hydrothermal chimney clone CHA3-66 prokMSA_id:27126 AJ132724.1 deep-sea hydrothermal chimney clone CHA3-124 prokMSA_id:33261 AJ132731.1 deep-sea hydrothermal chimney clone CHA3-102 prokMSA_id:42967 AJ132723.1 deep-sea hydrothermal chimney clone CHA3-101 prokMSA_id:48263 AJ132732.1 deep-sea hydrothermal chimney clone CHA3-30 prokMSA_id:49402 AJ132730.1 deep-sea hydrothermal chimney clone CHA3-4 prokMSA_id:72967 AJ132725.1 deep-sea hydrothermal chimney clone CHA3-217 prokMSA_id:74747 AJ132729.1 deep-sea hydrothermal chimney clone CHA3-215 prokMSA_id:113800 AY922206.1 grey whale bone Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131650 prokMSA_id:114004 AY922184.1 grey whale bone Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131588 prokMSA_id:114165 AY922182.1 grey whale bone Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131582 2.43.4.1.1.2.10434 OTU 4 seqs prokMSA_id:11209 L37787.1 Campylobacter gracilis prokMSA_id:56165 AF550656.1 Campylobacter gracilis str. LMG 7616 prokMSA_id:57351 AF550657.1 Campylobacter gracilis str. CCUG 13143 prokMSA_id:57352 AF550658.1 Campylobacter gracilis str. CCUG 27721 2.43.4.1.1.2.10439 OTU 5 seqs prokMSA_id:11186 X82931.1 Dehalospirillum multivorans prokMSA_id:11189 U85964.1 Sulfurospirillum arsenophilum str. MIT-13 prokMSA_id:16474 AF246664.1 Enrichment clone JMP-9 prokMSA_id:25462 AF218076.1 Sulfurospirillum halorespirans str. PCE-M2 prokMSA_id:40099 AB030587.1 groundwater clone 1014 2.43.4.1.1.2.10446 OTU 4 seqs prokMSA_id:75446 AY164450.1 hypersaline anoxic basin; brine interface Urania Mediterranean Sea clone ULIB-70 prokMSA_id:76194 AY164355.1 hypersaline anoxic basin; brine interface L'Atalante Mediterranean Sea clone ALIB-70 prokMSA_id:83509 AY226332.1 brine water Urania Mediterranean Sea clone UBBB-42 prokMSA_id:84374 AY226194.1 brine water L'Atalante Mediterranean Sea clone ABBB-16 2.43.4.1.1.2.10447 OTU 18 seqs prokMSA_id:11087 L12765.1 Flexispira rappini prokMSA_id:11185 U41564.1 "Geospirillum barnesii" prokMSA_id:11187 Y13671.1 Sulfurospirillum deleyianum str. Spirillum 5175 prokMSA_id:11191 L14632.1 Bacterial species prokMSA_id:39964 AF292380.1 Helicobacter sp. str. MIT 99-5659-3 prokMSA_id:66096 AB074956.1 clone:KB21 clone KB21 prokMSA_id:66190 AJ488073.1 chlorobenzene-degrading consortium clone IA-22 prokMSA_id:77541 AJ535704.1 Sulfurospirillum sp. str. EK7 prokMSA_id:79697 AY189928.1 Sulfurospirillum sp. str. JPD-1 prokMSA_id:85047 AY208812.1 cave microbial mats clone LKC2.127-7 prokMSA_id:100941 AB186804.1 polychlorinated dioxin dechlorinating microcosm clone TSAC01 prokMSA_id:102465 AY548973.1 marine bone clone boneC15D1 prokMSA_id:103575 AY266270.1 oil production water clone CT1 prokMSA_id:103740 AY548994.1 marine bone clone boneC3F4 prokMSA_id:108462 AY570586.1 -temperature biodegraded Canadian oil reservoir clone PL-28B5 prokMSA_id:108694 AY756183.1 arsenate-reducing NP4 prokMSA_id:108711 AY756596.1 Siwhaho sediment clone LJ7 prokMSA_id:111793 AY704396.1 oceanic crust clone FS140-2B-02 2.43.4.1.1.2.10450 OTU 1 seq prokMSA_id:45228 AJ271653.1 Arcobacter sp. B4b1 2.43.4.1.1.2.10456 OTU 12 seqs prokMSA_id:11213 L04319.1 Campylobacter sputorum prokMSA_id:11221 L06975.1 Campylobacter showae prokMSA_id:56203 AF550663.1 Campylobacter mucosalis str. ATCC 43265 prokMSA_id:57347 AF550661.1 Campylobacter mucosalis str. ATCC 49353 prokMSA_id:57348 AF550662.1 Campylobacter mucosalis str. ATCC 49354 prokMSA_id:57349 AF550660.1 Campylobacter mucosalis str. ATCC 49352 prokMSA_id:57350 AF550659.1 Campylobacter rectus str. LMG 7611 prokMSA_id:57354 AF550652.1 Campylobacter curvus str. LMG 13936 prokMSA_id:57355 AF550654.1 Campylobacter concisus str. LMG 13937 prokMSA_id:57356 AF550653.1 Campylobacter concisus str. LMG 7545 prokMSA_id:57357 AF550651.1 Campylobacter curvus str. LMG 11127 prokMSA_id:57358 AF550650.1 Campylobacter curvus str. LMG 11034 2.43.4.1.1.2.10461 OTU 2 seqs prokMSA_id:11183 AB015259.1 deepest cold-seep area Japan Trench clone JTB360 proteobacterium prokMSA_id:79301 AB100003.1 inactive deep-sea hydrothermal vent chimneys clone IndB2-33 2.43.4.1.1.2.10463 OTU 13 seqs prokMSA_id:11220 L04314.1 Campylobacter fetus prokMSA_id:11222 L14633.1 Campylobacter fetus prokMSA_id:11226 M65012.1 Campylobacter fetus prokMSA_id:11242 M65011.1 Campylobacter fetus prokMSA_id:20808 AJ306568.1 Campylobacter fetus subsp. venerealis 002\827 subsp. prokMSA_id:52782 AJ306569.1 Campylobacter fetus subsp. venerealis 102\804 subsp. prokMSA_id:57387 AF550619.1 Campylobacter subsp. fetus str. H00/415 prokMSA_id:57388 AF550618.1 Campylobacter subsp. fetus str. F-107/4132 subsp. prokMSA_id:68798 AF482990.1 Campylobacter subsp. fetus prokMSA_id:71368 AF219234.1 Campylobacter fetus MGH 97-3574 prokMSA_id:103129 AY621301.1 Campylobacter fetus str. 23D prokMSA_id:105082 AY621110.1 Campylobacter subsp. fetus str. ATCC 25936 prokMSA_id:110282 AY864915.1 Campylobacter fetus subsp. venerealis str. 84-112 2.43.4.1.1.2.10464 OTU 2 seqs prokMSA_id:59205 AY135396.1 Campylobacter sp. str. NO3A prokMSA_id:59210 AY135395.1 Campylobacter sp. str. NO2B 2.43.4.1.1.2.10465 OTU 1 seq prokMSA_id:35552 AF468785.1 clone 33-FL34B00 2.43.4.1.1.2.10474 OTU 1 seq prokMSA_id:11181 AB013833.1 NB1-l clone NB1-l 2.43.4.1.1.2.10484 OTU 5 seqs prokMSA_id:11247 U03022.1 Campylobacter helveticus prokMSA_id:57359 AF550649.1 Campylobacter helveticus str. CCUG 34016 prokMSA_id:57360 AF550648.1 Campylobacter helveticus str. CCUG 34016 prokMSA_id:57361 AF550647.1 Campylobacter helveticus str. CCUG 30563 prokMSA_id:57363 AF550646.1 Campylobacter helveticus str. LMG 12639 2.43.4.1.1.2.10485 OTU 1 seq prokMSA_id:11190 AF038843.1 Sulfurospirillum barnesii str. SES-3 2.43.4.1.1.2.10486 OTU 1 seq prokMSA_id:11194 AF142835.1 clone BURTON-15 2.43.4.1.1.2.10487 OTU 1 seq prokMSA_id:11195 AF142800.1 clone ACE-24 2.43.4.1.1.2.10494 OTU 1 seq prokMSA_id:69947 AJ276874.1 Campylobacter faecalis str. 1433 stool sample isolate 2.43.4.1.1.2.10496 OTU 1 seq prokMSA_id:51975 AJ271654.1 Arcobacter sp. D1a1 2.43.4.1.1.2.10498 OTU 1 seq prokMSA_id:32175 AF388883.1 Arcobacter sp. clone GOBB3-CL322 2.43.4.1.1.2.10499 OTU 1 seq prokMSA_id:16393 AF468786.1 clone 33-FL76B00 2.43.4.1.1.2.10500 OTU 1 seq prokMSA_id:11193 Y11561.1 Sulfurospirillum arcachonense str. F1F6 (DSMZ 9755) 2.43.4.1.1.2.10502 OTU 1 seq prokMSA_id:16659 AF468699.1 clone 33-PA73B98 2.43.4.1.1.2.10503 OTU 2 seqs prokMSA_id:11179 L14627.1 Arcobacter nitrofigilis prokMSA_id:72479 AY062177.1 marine sediments isolate str. MSC2 2.43.4.1.1.2.10508 OTU 1 seq prokMSA_id:32546 AY005038.1 subgingival dental plaque clone BB120 2.43.4.1.1.2.10509 OTU 1 seq prokMSA_id:62490 AF513952.1 Sulfurospirillum sp. clone LA4-B52N 2.43.4.1.1.2.10512 OTU 1 seq prokMSA_id:33429 AF468745.1 clone 33-PA55B00 2.43.4.1.1.2.10523 OTU 1 seq prokMSA_id:61870 AF449239.1 Riftia pachyptila's tube clone R103-B70 2.43.4.1.1.2.10527 OTU 5 seqs prokMSA_id:11158 L14626.1 Arcobacter butzlerii prokMSA_id:11159 U34386.1 Arcobacter butzleri Pig 61 prokMSA_id:11160 U34388.1 Arcobacter butzleri Pig 15 prokMSA_id:36386 AF314538.1 Arcobacter butzleri oN_107_00 prokMSA_id:106004 AY621116.1 Arcobacter butzleri str. ATCC 49616 2.43.4.1.1.2.10529 OTU 4 seqs prokMSA_id:30662 AB030597.1 groundwater clone 1003 prokMSA_id:35496 AB030595.1 groundwater clone 1032 prokMSA_id:36312 AB030596.1 groundwater clone 1067 prokMSA_id:50542 AB030594.1 groundwater clone 1021 2.43.4.1.1.2.10532 OTU 7 seqs prokMSA_id:11200 AF097681.1 Campylobacter subsp. hyointestinalis str. 0425 subsp. prokMSA_id:11201 AF097682.1 Campylobacter subsp. hyointestinalis str. 0943 subsp. prokMSA_id:11202 AF097689.1 Campylobacter subsp. hyointestinalis str. NCTC11608 subsp. prokMSA_id:11203 AF097690.1 Campylobacter subsp. hyointestinalis str. SVS3035 subsp. prokMSA_id:64355 AF499005.1 Campylobacter hyointestinalis str. H00/108 prokMSA_id:69901 AF219233.1 Campylobacter fetus MGH 97-2126 prokMSA_id:70687 AF219235.1 Campylobacter hyointestinalis MGH 97-2652 2.43.4.1.1.2.10538 OTU 13 seqs prokMSA_id:11161 L14625.1 Arcobacter skirrowi prokMSA_id:11165 L14624.1 Arcobacter cryaerophilus prokMSA_id:11169 Z93999.1 activated sludge clone T24 prokMSA_id:11171 Z94001.1 activated sludge clone T55 prokMSA_id:11178 U34387.1 Arcobacter cryaerophilus Pig 69 prokMSA_id:102614 AJ607391.1 Arcobacter cibarius str. LMG 21996 prokMSA_id:102768 AJ607392.1 Arcobacter cibarius str. LMG 21997 prokMSA_id:104460 AB175387.1 mesophilic anaerobic BSA digester clone BSA2B-15 prokMSA_id:104615 AB175388.1 mesophilic anaerobic BSA digester clone BSA2B-16 prokMSA_id:104758 AB175389.1 mesophilic anaerobic BSA digester clone BSA2B-17 prokMSA_id:105235 AY314753.1 Arcobacter sp. 16389 prokMSA_id:105384 AY314754.1 Arcobacter sp. 16695-3 prokMSA_id:105549 AY314755.1 Arcobacter cryaerophilus CCUG 17802 2.43.4.1.1.2.10540 OTU 1 seq prokMSA_id:57353 AF550655.1 Campylobacter showae str. LMG 12636 2.43.4.1.1.2.10542 OTU 2 seqs prokMSA_id:19883 AF357198.1 Sulfurospirillum sp. str. Am-N prokMSA_id:22148 AF357199.1 Sulfurospirillum sp. str. 18.1 2.43.4.1.1.2.10546 OTU 58 seqs prokMSA_id:11214 Z29326.1 Campylobacter jejuni prokMSA_id:11219 Y11763.1 Campylobacter sp. str. NCTC 13006 prokMSA_id:11243 M59073.1 Campylobacter coli prokMSA_id:11244 L04316.1 Campylobacter lari prokMSA_id:11249 L04312.1 Campylobacter coli prokMSA_id:11253 L19738.1 Campylobacter hyoilei prokMSA_id:11256 M59298.1 Campylobacter jejuni prokMSA_id:11257 L04315.1 Campylobacter jejuni prokMSA_id:11258 Y19244.1 Campylobacter jejuni subsp. doylei str. SSI 5384-98 prokMSA_id:49562 NC_002163.1 Campylobacter jejuni subsp. jejuni NCTC 11168 prokMSA_id:54599 AB066098.1 Campylobacter lari str. CF89-12 Japanese strain prokMSA_id:55836 AF550628.1 Campylobacter jejuni str. H99/240 prokMSA_id:57373 AF550634.1 Campylobacter lari str. LMG 14338 prokMSA_id:57374 AF550630.1 Campylobacter jejuni str. B99/206 prokMSA_id:57375 AF550631.1 Campylobacter lari prokMSA_id:57376 AF550629.1 Campylobacter jejuni str. B99/224 prokMSA_id:57377 AF550627.1 Campylobacter jejuni str. LMG 9243 prokMSA_id:57378 AF550626.1 Campylobacter jejuni str. LMG 9217 prokMSA_id:57379 AF550625.1 Campylobacter coli str. B99/131 prokMSA_id:57380 AF550624.1 Campylobacter coli str. H99/155 prokMSA_id:57381 AF550623.1 Campylobacter coli str. H99/119 prokMSA_id:57382 AF550622.1 Campylobacter coli str. LMG 15884 prokMSA_id:57383 AF550621.1 Campylobacter coli str. LMG 15883 prokMSA_id:57384 AF550620.1 Campylobacter coli str. LMG 9220 prokMSA_id:63933 AL139075.2 Campylobacter subsp. jejuni str. NCTC 11168 subsp. prokMSA_id:66978 AF372096.1 Campylobacter coli str. 98/C053/12 prokMSA_id:66979 AF372095.1 Campylobacter coli str. 98/C053/11 prokMSA_id:66980 AF372093.1 Campylobacter coli str. 98/C053/1 prokMSA_id:66981 AF372094.1 Campylobacter coli str. 98/C053/2 prokMSA_id:66982 AF393203.1 Campylobacter jejuni str. 98/E599/10 prokMSA_id:66983 AF393202.1 Campylobacter jejuni str. 98/E600/5 prokMSA_id:66984 AF393204.1 Campylobacter jejuni str. WH11 prokMSA_id:66985 AF372092.1 Campylobacter coli str. LMG 6440 prokMSA_id:66989 AF372091.1 Campylobacter jejuni str. NCTC 11351 prokMSA_id:74490 AF550633.1 Campylobacter lari str. LMG 11760 prokMSA_id:100202 AB181360.1 Campylobacter lari str. NCTC12895 prokMSA_id:100360 AB181361.1 Campylobacter lari str. NCTC12896 prokMSA_id:100818 AB181364.1 Campylobacter lari str. A3 prokMSA_id:101300 AB181367.1 Campylobacter lari str. 84C-1 prokMSA_id:101476 AB181368.1 Campylobacter lari str. JCM2530 prokMSA_id:101643 AB181369.1 Campylobacter lari str. 84C-2 prokMSA_id:105014 AB181356.1 Campylobacter lari str. CF89-14 prokMSA_id:105165 AB181357.1 Campylobacter lari str. NCTC12892 prokMSA_id:105242 AY621111.1 Campylobacter jejuni subsp. doylei prokMSA_id:105325 AB181358.1 Campylobacter lari str. NCTC12893 prokMSA_id:105389 AY621112.1 Campylobacter subsp. jejuni str. ATCC 49943 prokMSA_id:105482 AB181359.1 Campylobacter lari str. NCTC12894 prokMSA_id:105701 AY621114.1 Campylobacter lari str. ATCC 35221 prokMSA_id:105850 AY621115.1 Campylobacter coli str. ATCC 49941 prokMSA_id:109656 AAFL01000009.1 Campylobacter coli str. RM2228 prokMSA_id:109732 NZ_AAFL01000009.1 Campylobacter coli str. RM2228 prokMSA_id:109964 AAFL01000004.1 Campylobacter coli str. RM2228 prokMSA_id:110570 AAFL01000001.1 Campylobacter coli str. RM2228 prokMSA_id:110636 NZ_AAFL01000004.1 Campylobacter coli str. RM2228 prokMSA_id:110770 NZ_AAFL01000001.1 Campylobacter coli str. RM2228 prokMSA_id:111204 AY628389.1 Campylobacter jejuni str. 6871 prokMSA_id:111370 NC_003912.7 Campylobacter jejuni str. RM1221 prokMSA_id:112332 CP000025.1 Campylobacter jejuni str. RM1221 2.43.4.1.1.2.10549 OTU 9 seqs prokMSA_id:55374 AF497806.1 Campylobacter upsaliensis str. G1104 prokMSA_id:57362 AF550645.1 Campylobacter upsaliensis str. L 461 prokMSA_id:57364 AF550644.1 Campylobacter upsaliensis str. H53 E/ccda prokMSA_id:57365 AF550642.1 Campylobacter upsaliensis str. H29 prokMSA_id:57367 AF550643.1 Campylobacter upsaliensis str. H37 E/1 prokMSA_id:57368 AF550640.1 Campylobacter upsaliensis str. LMG 8851 prokMSA_id:60770 AF497805.1 Campylobacter upsaliensis str. LMG 8850 prokMSA_id:70846 AF393205.1 Campylobacter upsaliensis str. WH6 prokMSA_id:105553 AY621113.1 Campylobacter upsaliensis str. ATCC 43954 2.43.4.1.1.2.10553 OTU 20 seqs prokMSA_id:11204 AF043423.1 Campylobacter lanienae str. UB 993 prokMSA_id:11205 AF043425.1 Campylobacter lanienae str. NCTC 13004 prokMSA_id:11233 AF097683.1 Campylobacter hyointestinalis subsp. lawsonii str. CCUG27631 prokMSA_id:11234 AF097685.1 Campylobacter hyointestinalis subsp. lawsonii str. CHY5 subsp. prokMSA_id:11235 AF097686.1 Campylobacter hyointestinalis subsp. lawsonii str. CHY6 subsp. prokMSA_id:11236 AF097687.1 Campylobacter hyointestinalis subsp. lawsonii str. CHY7 subsp. prokMSA_id:11237 AF097688.1 Campylobacter hyointestinalis subsp. lawsonii str. CHY8 subsp. prokMSA_id:11238 AF097691.1 Campylobacter subsp. hyointestinalis str. SVS3038 subsp. prokMSA_id:11239 AF043422.1 Campylobacter cf. lanienae str. UB 992 prokMSA_id:11240 AF043424.1 Campylobacter cf. lanienae str. UB 994 prokMSA_id:32509 AJ408195.1 equine large intestine clone MW08 prokMSA_id:49620 AF371867.1 phylotype OTU-251 swine intestine clone p-2602-9F5 prokMSA_id:53197 AF097684.1 Campylobacter hyointestinalis subsp. lawsonii str. CHY4 prokMSA_id:56461 AB076675.1 Campylobacter lanienae str. FK171 prokMSA_id:57346 AF550664.1 Campylobacter lanienae str. S-K FAVW prokMSA_id:64363 AB076676.1 Campylobacter lanienae str. FK172 prokMSA_id:64364 AB076677.1 Campylobacter lanienae str. FK176 prokMSA_id:75078 AY165045.1 Campylobacter lanienae G718b prokMSA_id:86812 AY288304.1 Campylobacter lanienae str. L52 prokMSA_id:104552 AF371868.1 phylotype OTU-251 swine intestine clone p-4321-4Wa3 2.43.4.1.1.2.10554 OTU 1 seq prokMSA_id:28982 AF468737.1 clone 33-PA6B00 2.43.4.1.1.2.10555 OTU 1 seq prokMSA_id:25916 AF195486.1 September collection clone kps57f 2.43.4.1.1.2.10557 OTU 1 seq prokMSA_id:38114 AF468739.1 clone 33-PA74B00 2.43.4.1.1.2.10558 OTU 1 seq prokMSA_id:48714 AF424299.1 clone MERTZ_0CM_34 2.43.4.1.1.2.10560 OTU 1 seq prokMSA_id:49553 AF468777.1 clone 33-FL58B00 2.43.4.1.1.2.10561 OTU 1 seq prokMSA_id:49628 AF235116.1 North Sea clone KTc1160 2.43.4.1.1.2.10563 OTU 1 seq prokMSA_id:11192 AF144694.2 Campylobacter sp. str. DSM 806 2.43.4.1.1.2.10564 OTU 1 seq prokMSA_id:44326 AF468749.1 clone 33-PA28B00 2.43.4.1.1.2.10583 OTU 1 seq prokMSA_id:21381 AF224798.1 clone Car12fa 2.43.4.1.1.2.10586 OTU 4 seqs prokMSA_id:28947 AB030589.1 groundwater clone 1058 prokMSA_id:44032 AB030588.1 groundwater clone 1018 prokMSA_id:66170 AJ488095.1 chlorobenzene-degrading consortium clone IIIA-8 prokMSA_id:66178 AJ488086.1 chlorobenzene-degrading consortium clone IIB-25 2.43.4.1.1.2.10598 OTU 1 seq prokMSA_id:33791 AF468698.1 clone 33-PA64B98 2.43.4.1.1.2.10601 OTU 1 seq prokMSA_id:32899 AF195485.1 September collection clone kps81f 2.43.4.1.1.2.10603 OTU 1 seq prokMSA_id:11173 Z94003.1 clone T40 2.43.4.1.1.2.10604 OTU 1 seq prokMSA_id:11175 D83060.1 Endosymbiotic eubacteria 2.43.4.1.1.2.10607 OTU 1 seq prokMSA_id:73328 AF367491.1 deep-sea hydrothermal vent clone VC1.2-cl31 2.43.4.1.1.2.10608 OTU 1 seq prokMSA_id:29396 AF468779.1 clone 33-FL88B00 2.43.4.1.1.2.10613 OTU 1 seq prokMSA_id:57366 AF550641.1 Campylobacter upsaliensis str. LMG 8853 2.43.4.1.1.2.10617 OTU 1 seq prokMSA_id:30435 AF424300.1 clone MERTZ_0CM_367 2.43.4.1.1.3 sf_4 4 seqs 2.43.4.1.1.3.10420 OTU 4 seqs prokMSA_id:11210 AF062490.1 Campylobacter hominis str. HS- prokMSA_id:11211 AF062491.1 Campylobacter hominis str. HS-B prokMSA_id:11212 AF062492.1 Campylobacter hominis str. HS-C prokMSA_id:36254 AJ251584.1 Campylobacter hominis str. NCTC 13146 CH001A 2.43.4.1.2 Helicobacteraceae 233 seqs 2.43.4.1.2.1 sf_15 1 seq 2.43.4.1.2.1.10469 OTU 1 seq prokMSA_id:11120 L35523.1 Alvinella pompejana epibiont 2.43.4.1.2.2 sf_23 13 seqs 2.43.4.1.2.2.10443 OTU 13 seqs prokMSA_id:10946 U01330.1 Helicobacter pylori prokMSA_id:10958 U01328.1 Helicobacter pylori prokMSA_id:10959 AF142586.1 Helicobacter sp. 'liver 4' str. liver 4 prokMSA_id:10973 U00679.1 Helicobacter pylori prokMSA_id:10975 AF142583.1 Helicobacter sp. 'liver 1' str. liver 1 prokMSA_id:11013 Z25741.1 Helicobacter pylori prokMSA_id:11018 U01331.1 Helicobacter pylori prokMSA_id:11084 U01332.1 Helicobacter pylori prokMSA_id:11086 Z25742.1 Helicobacter pylori prokMSA_id:31459 AF348617.1 Helicobacter pylori str. ATCC 49396 prokMSA_id:57708 AF535198.1 Helicobacter pylori str. Lit81 prokMSA_id:57709 AF535197.1 Helicobacter pylori str. Lit76 prokMSA_id:57710 AF535196.1 Helicobacter pylori str. Lit69 2.43.4.1.2.3 sf_3 218 seqs 2.43.4.1.2.3.10385 OTU 1 seq prokMSA_id:11008 AF142150.1 Helicobacter sp. 'pig E1' 2.43.4.1.2.3.10386 OTU 1 seq prokMSA_id:39617 AF316120.1 cf. Helicobacter sp. isolate str. B6 2.43.4.1.2.3.10399 OTU 2 seqs prokMSA_id:34981 AB030590.1 groundwater clone 1070 prokMSA_id:66099 AB074953.1 clone:KB36 clone KB36 2.43.4.1.2.3.10408 OTU 1 seq prokMSA_id:34515 AF367499.1 clone VC1.2-cl69 2.43.4.1.2.3.10411 OTU 1 seq prokMSA_id:77641 AB089112.2 termite gut homogenate clone Rs-P71 proteobacterium 2.43.4.1.2.3.10415 OTU 1 seq prokMSA_id:74305 AF225550.2 Helicobacter sp. str. MIT 94-022 2.43.4.1.2.3.10417 OTU 1 seq prokMSA_id:82339 AY216452.1 temperate estuarine mud clone KM61 2.43.4.1.2.3.10423 OTU 1 seq prokMSA_id:77777 AJ535216.1 marine sediment above hydrate ridge clone Hyd01-01 proteobacterium 2.43.4.1.2.3.10425 OTU 1 seq prokMSA_id:81472 AB088432.1 Sulfurimonas autotrophica str. OK5 2.43.4.1.2.3.10428 OTU 5 seqs prokMSA_id:11021 AF034135.1 Flexispira rappini FH 9702248 prokMSA_id:27482 AF207737.1 Helicobacter cinaedi str. ADN 0413 prokMSA_id:29786 AF302762.1 Flexispira rappini str. IMM 687835 prokMSA_id:56169 AF497810.1 Helicobacter cinaedi str. 94105 prokMSA_id:60772 AF497807.1 Flexispira rappini str. FR106 2.43.4.1.2.3.10430 OTU 17 seqs prokMSA_id:11003 AF127028.1 Candidatus Helicobacter suis prokMSA_id:11004 AF142146.1 Helicobacter sp. 'pig A2' prokMSA_id:11005 AF142147.1 Helicobacter sp. 'pig B1' prokMSA_id:11006 AF142148.1 Helicobacter sp. 'pig B6' prokMSA_id:11007 AF142149.1 Helicobacter sp. 'pig D7' prokMSA_id:11009 AF142151.1 Helicobacter sp. 'pig F8' prokMSA_id:55918 AF506781.1 Helicobacter heilmannii str. CM2 prokMSA_id:64305 AF506792.1 Helicobacter heilmannii str. RM2 prokMSA_id:64307 AF506793.1 Helicobacter heilmannii str. RM1 prokMSA_id:64310 AF506791.1 Helicobacter heilmannii str. P5 prokMSA_id:64314 AF506782.1 Helicobacter heilmannii str. MM1 prokMSA_id:64316 AF506783.1 Helicobacter heilmannii str. MM2 prokMSA_id:64324 AF506773.1 Helicobacter heilmannii str. HU4 prokMSA_id:64328 AF506769.1 Helicobacter heilmannii str. HU5 prokMSA_id:71558 AF506790.1 Helicobacter heilmannii str. P4 prokMSA_id:72724 AF506780.1 Helicobacter heilmannii str. CM1 prokMSA_id:73122 AF506787.1 Helicobacter heilmannii str. P1 2.43.4.1.2.3.10432 OTU 9 seqs prokMSA_id:61857 AF449252.1 Riftia pachyptila's tube clone R76-B129 prokMSA_id:61859 AF449250.1 Riftia pachyptila's tube clone R76-B76 prokMSA_id:61860 AF449249.1 Riftia pachyptila's tube clone R76-B67 prokMSA_id:61862 AF449247.1 Riftia pachyptila's tube clone R76-B57 prokMSA_id:61863 AF449246.1 Riftia pachyptila's tube clone R76-B51 prokMSA_id:61864 AF449244.1 Riftia pachyptila's tube clone R76-B25 prokMSA_id:61865 AF449245.1 Riftia pachyptila's tube clone R76-B47 prokMSA_id:61868 AF449242.1 Riftia pachyptila's tube clone R76-B29 prokMSA_id:61871 AF449238.1 Riftia pachyptila's tube clone R103-B46 2.43.4.1.2.3.10435 OTU 1 seq prokMSA_id:25670 AJ307941.1 microbial 'pearl'- community clone sipK94 2.43.4.1.2.3.10436 OTU 14 seqs prokMSA_id:10964 U65103.1 Helicobacter trogontum str. LRB 8581 prokMSA_id:10976 L39122.1 "Heliobacterium hepaticus" prokMSA_id:11040 AF010140.1 Helicobacter muridarum str. UNSW 1.7st prokMSA_id:11041 AF013464.1 Helicobacter muridarum str. UNSW 1.6cae prokMSA_id:16301 AF107494.1 Helicobacter sp. 'Flexispira taxon 10' str. MIT 97-6194-5 'Flexispira prokMSA_id:25488 AF302104.1 Helicobacter muridarum str. ATCC49282 prokMSA_id:26677 AF237612.1 Helicobacter sp. str. Wee Tee prokMSA_id:48289 AF297868.1 Helicobacter aurati str. MIT 97-5075c prokMSA_id:49735 AF333340.1 Helicobacter sp. str. MIT 99-5507 prokMSA_id:69782 AF302108.1 Helicobacter sp. str. HC15880 prokMSA_id:74512 AJ249859.1 Helicobacter sp. blood isolate 11934 prokMSA_id:81282 AY203901.1 Helicobacter sp. MIT 01-6242 prokMSA_id:82083 AY203903.1 Helicobacter sp. MIT 01-5924 prokMSA_id:82242 AY203898.1 Helicobacter sp. MIT 01-5529A 2.43.4.1.2.3.10438 OTU 6 seqs prokMSA_id:11137 AF154091.1 hydrocarbon seep clone BPC056 prokMSA_id:11138 AF154101.1 hydrocarbon seep clone GCA014 prokMSA_id:11143 AB015582.1 deep-sea sediment clone BD7-6 prokMSA_id:61858 AF449251.1 Riftia pachyptila's tube clone R76-B78 prokMSA_id:61878 AF449231.1 Riftia pachyptila's tube clone R103-B15 prokMSA_id:82567 AB091293.1 deep-sea hydrothermal vent environments isolate str. 49MY 49MY 2.43.4.1.2.3.10442 OTU 16 seqs prokMSA_id:10952 M88157.1 Helicobacter pylori prokMSA_id:11014 M88156.1 Helicobacter mustelae prokMSA_id:11045 AF047847.2 Helicobacter bilis str. MIT 97-6456 prokMSA_id:11046 AF047850.1 Helicobacter pullorum str. MIT 92-7458 prokMSA_id:24309 AF455130.2 Helicobacter cetorum str. MIT 00-7128 prokMSA_id:29793 AF225547.1 Helicobacter sp. 'Flexispira taxon 3' str. ATCC49320 prokMSA_id:31862 AY009132.1 Helicobacter sp. str. YMRC 000428 prokMSA_id:52884 AF284754.1 Helicobacter apodemus str. YMRC 000215 prokMSA_id:64304 AF506794.1 Helicobacter heilmannii str. TD1 prokMSA_id:72792 AF292378.1 Helicobacter cetorum str. MIT 99-5656 prokMSA_id:74354 AF292377.1 Helicobacter sp. str. MIT 99-5657 prokMSA_id:74909 AY155587.1 Helicobacter pylori str. 1205 prokMSA_id:76377 AY143177.1 Helicobacter cetorum str. MIT 01-6202 prokMSA_id:77094 AY143175.1 Helicobacter cetorum str. MIT 00-5903 prokMSA_id:102268 AY631954.1 Helicobacter mustelae str. MIT 89-977 prokMSA_id:112603 AJ876518.1 Helicobacter pullorum str. ATCC 51801 2.43.4.1.2.3.10444 OTU 3 seqs prokMSA_id:11015 AB006147.1 Helicobacter suncus str. Kaz-1 prokMSA_id:11016 AB006148.1 Helicobacter suncus str. Kaz-2 prokMSA_id:28993 AF061104.1 Helicobacter typhlonius str. MU96-1 2.43.4.1.2.3.10448 OTU 9 seqs prokMSA_id:10966 Y09404.1 Helicobacter bizzozeronii str. CCUG 35045 prokMSA_id:10967 U51870.1 Helicobacter felis prokMSA_id:11026 U89351.1 Helicobacter salomonis str. Inkinen prokMSA_id:11027 AF103879.1 Helicobacter felis str. 937-12 prokMSA_id:11028 AF103880.1 Helicobacter felis str. 390-9 prokMSA_id:11032 U51871.1 Helicobacter felis prokMSA_id:11033 U51872.1 Helicobacter felis prokMSA_id:47191 AF302107.1 Helicobacter bizzozeronii str. ATCC700031 prokMSA_id:109118 AY634588.1 stomach clone 2.43.4.1.2.3.10449 OTU 1 seq prokMSA_id:11104 AB013263.1 deep-sea sediment clone NKB11 2.43.4.1.2.3.10451 OTU 11 seqs prokMSA_id:10968 Y09405.1 Helicobacter salomonis 4 prokMSA_id:10969 Y18028.1 Helicobacter heilmannii str. AF53 prokMSA_id:10999 L10080.1 "Gastrospirillum hominis" prokMSA_id:11000 AF142152.1 Helicobacter sp. 'pig C2' prokMSA_id:11029 AF103881.1 Helicobacter felis str. 144-10 prokMSA_id:11030 AF103882.1 Helicobacter felis str. 1136-7 prokMSA_id:11031 AF103883.1 Helicobacter bizzozeronii str. 865-2 prokMSA_id:11034 AF058768.1 Helicobacter heilmannii 1 prokMSA_id:64312 AF506786.1 Helicobacter heilmannii str. HU2 prokMSA_id:64317 AF506779.1 Helicobacter heilmannii str. C4S prokMSA_id:72292 AF506785.1 Helicobacter heilmannii str. WD1 2.43.4.1.2.3.10452 OTU 1 seq prokMSA_id:11109 AF121884.1 phenol-degrading consortium clone Phenol-1 2.43.4.1.2.3.10454 OTU 5 seqs prokMSA_id:10951 M88142.1 Helicobacter sp. prokMSA_id:11047 U96300.1 Helicobacter trogontum str. ATCC 43968 prokMSA_id:11050 U46129.1 Helicobacter cholecystus str. Hkb-1 prokMSA_id:11067 L36143.1 Helicobacter pullorum str. NCTC 12826 prokMSA_id:50310 AF302105.1 Helicobacter pametensis str. ATCC51478 2.43.4.1.2.3.10460 OTU 1 seq prokMSA_id:11042 U07573.2 Helicobacter hepaticus 2.43.4.1.2.3.10462 OTU 8 seqs prokMSA_id:10983 U96296.1 Helicobacter rodentium str. MIT 95-1707 prokMSA_id:10990 U96297.1 Helicobacter rodentium str. MIT 96-1312 prokMSA_id:10991 U96298.1 Helicobacter sp. str. MIT 95-2011 prokMSA_id:16734 AF371869.1 phylotype OTU-357 swine intestine clone p-4283-4Wa3 prokMSA_id:27055 AF333339.1 Helicobacter sp. str. MIT 99-5504 prokMSA_id:34144 AF333338.1 Helicobacter sp. str. MIT 99-5501 prokMSA_id:42376 AF455131.1 Helicobacter sp. str. MIT 00-7129 whale 2 prokMSA_id:100344 AY461713.1 mouse caecum clone 2.43.4.1.2.3.10467 OTU 1 seq prokMSA_id:66100 AB074952.1 clone:KB16 clone KB16 2.43.4.1.2.3.10470 OTU 1 seq prokMSA_id:11121 L35520.1 Alvinella pompejana 2.43.4.1.2.3.10471 OTU 1 seq prokMSA_id:11124 L35521.1 Alvinella pompejana epibiont 2.43.4.1.2.3.10478 OTU 1 seq prokMSA_id:38197 AF367496.1 deep-sea hydrothermal vent clone VC1.2-cl51 2.43.4.1.2.3.10481 OTU 1 seq prokMSA_id:57474 AJ441203.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 13 proteobacterium 2.43.4.1.2.3.10482 OTU 1 seq prokMSA_id:57475 AJ441202.1 Paralvinella palmiformis mucus secretions clone P. palm C 140 proteobacterium 2.43.4.1.2.3.10491 OTU 1 seq prokMSA_id:37490 AF468743.1 clone 33-PA11B00 2.43.4.1.2.3.10493 OTU 1 seq prokMSA_id:11108 L40808.1 Thiomicrospira denitrificans 2.43.4.1.2.3.10495 OTU 1 seq prokMSA_id:11111 AF047625.1 Sulphur River Parker Cave Kentucky clone SRang1.25 2.43.4.1.2.3.10507 OTU 1 seq prokMSA_id:78064 AB089111.2 termite gut homogenate clone Rs-M59 proteobacterium 2.43.4.1.2.3.10518 OTU 1 seq prokMSA_id:11080 X67854.1 Helicobacter nemestrinae 2.43.4.1.2.3.10519 OTU 2 seqs prokMSA_id:26106 AF463534.1 Wolinella succinogenes str. BSA-1 prokMSA_id:29152 AF273252.1 Wolinella succinogenes str. SeR-1 2.43.4.1.2.3.10520 OTU 1 seq prokMSA_id:41542 AJ249858.1 Helicobacter sp. blood isolate 964 2.43.4.1.2.3.10526 OTU 1 seq prokMSA_id:61877 AF449232.1 Riftia pachyptila's tube clone R103-B18 2.43.4.1.2.3.10534 OTU 9 seqs prokMSA_id:11017 U08906.1 Helicobacter pylori prokMSA_id:11056 U01329.1 Helicobacter pylori prokMSA_id:36626 AF361935.1 Helicobacter pylori prokMSA_id:55890 AF535194.1 Helicobacter pylori str. Sal05 prokMSA_id:56665 AF535195.1 Helicobacter pylori str. Sal10 prokMSA_id:61186 AF512997.1 Helicobacter pylori 181 prokMSA_id:68374 AY062899.1 Helicobacter pylori str. 109 prokMSA_id:68375 AY062898.1 Helicobacter pylori str. 108 prokMSA_id:75781 AY155586.1 Helicobacter pylori str. 1200 2.43.4.1.2.3.10536 OTU 1 seq prokMSA_id:10980 AF127027.1 Candidatus Helicobacter bovis 2.43.4.1.2.3.10545 OTU 9 seqs prokMSA_id:23967 AF224806.1 clone Car29rb prokMSA_id:30408 AF224804.1 clone CarB13a prokMSA_id:33016 AF194187.1 clone n12r prokMSA_id:34512 AF194211.1 n22 clone n22 prokMSA_id:35085 AF224838.1 clone Car59rc prokMSA_id:36709 AF224802.1 clone Car73ra prokMSA_id:49247 AF194212.1 clone n29r prokMSA_id:50199 AF194210.1 clone n18r prokMSA_id:84016 AY226306.1 brine water Discovery Mediterranean Sea clone DBBB-68 2.43.4.1.2.3.10548 OTU 12 seqs prokMSA_id:11023 AF023862.1 Helicobacter sp prokMSA_id:11070 AF116577.1 Helicobacter sp. VA prokMSA_id:17350 AF348748.1 Helicobacter cinaedi str. CCUG 18818 prokMSA_id:20816 AF396078.1 Helicobacter cinaedi 30327 prokMSA_id:30026 AF396079.1 Helicobacter cinaedi 30365 prokMSA_id:38896 AJ249856.1 Helicobacter sp. blood isolate 3028 prokMSA_id:39557 AF286052.1 Helicobacter rappini W.Tee-Bat prokMSA_id:44759 AF396082.1 Helicobacter cinaedi 30314 prokMSA_id:47656 AJ249852.1 Helicobacter sp. blood isolate 2634 prokMSA_id:49270 AF396081.1 Helicobacter cinaedi 31111 prokMSA_id:70150 AF362544.2 Helicobacter sp. str. GOSH prokMSA_id:71514 AJ249854.1 Helicobacter sp. blood isolate 384 2.43.4.1.2.3.10552 OTU 3 seqs prokMSA_id:16388 AF246986.1 Helicobacter winghamensis str. NLEP 98-202 prokMSA_id:20336 AF363062.1 Helicobacter winghamensis str. NLEP 97-1611 prokMSA_id:60773 AF497811.1 Helicobacter sp. str. J2103 2.43.4.1.2.3.10562 OTU 33 seqs prokMSA_id:11022 AF118017.1 Flexispira rappini str. H1353 prokMSA_id:11053 U44756.1 Helicobacter sp prokMSA_id:11060 U18766.2 "Helicobacter bilis" prokMSA_id:11062 L13464.1 Helicobacter canis prokMSA_id:11063 AF142062.1 Helicobacter sp. 'feline isolate' prokMSA_id:11064 AF177475.1 Helicobacter canis str. MIT 98-152 prokMSA_id:11068 U18767.1 "Helicobacter bilis" prokMSA_id:11069 AF118807.1 Flexispira sp. str. CDC-H69 prokMSA_id:17771 AF334681.1 Helicobacter cf. pullorum str. W.Tee-Cro prokMSA_id:19959 U65102.1 Helicobacter canis str. MIT 95-5359 prokMSA_id:20805 AF207738.1 Helicobacter cinaedi str. CCUG 33887 prokMSA_id:23629 AF047851.2 Helicobacter sp. 'Flexispira taxon 8' str. ATCC 49317 prokMSA_id:26344 AJ249855.1 Helicobacter sp. blood isolate 1199 prokMSA_id:26749 AF320621.1 Helicobacter sp. str. MIT 98-5357 prokMSA_id:26909 AJ249857.1 Helicobacter sp. blood isolate 1058 prokMSA_id:28820 U51873.1 "Helicobacter bilis" prokMSA_id:28994 AF225548.1 Helicobacter trogontum str. ATCC 49310 prokMSA_id:29701 AF286053.1 Helicobacter rappini W.Tee-Yu prokMSA_id:29878 AF072333.1 Helicobacter sp. 'hamster B' str. hamster B prokMSA_id:32695 AF225549.1 Helicobacter sp. 'Flexispira taxon 8' str. ATCC 49317 'Flexispira prokMSA_id:32900 AF336948.1 Helicobacter sp. str. MIT 95-234-6 prokMSA_id:40721 AY034821.1 Helicobacter rappini str. H 157 S prokMSA_id:47556 AY034820.1 Helicobacter rappini str. H 95 S prokMSA_id:48498 AF054578.1 Helicobacter sp. str. UNSW1.7sp prokMSA_id:49662 AF127912.1 Helicobacter sp. str. 97-6810 prokMSA_id:49754 AJ011431.2 Helicobacter sp. 'MZ 640285' str. MZ 640285 'MZ prokMSA_id:68999 AF225546.1 Helicobacter sp. 'Flexispira taxon 2' str. ATCC49314 prokMSA_id:70187 AF054579.1 Helicobacter sp. str. UNSWMCSp1 prokMSA_id:70293 AF054577.1 Helicobacter sp. str. UNSW1.7col prokMSA_id:71120 AY034818.1 Helicobacter rappini str. 2 SU prokMSA_id:72874 AJ007931.1 Helicobacter hepaticus prokMSA_id:74357 AY034819.1 Helicobacter rappini str. 3 SU prokMSA_id:81166 AY203899.1 Helicobacter sp. MIT 01-5529B 2.43.4.1.2.3.10570 OTU 1 seq prokMSA_id:41903 AF327025.1 Helicobacter sp. MN-3 2.43.4.1.2.3.10571 OTU 1 seq prokMSA_id:11142 AB015535.1 deep-sea sediment clone BD2-5 2.43.4.1.2.3.10572 OTU 1 seq prokMSA_id:10974 AF057163.1 Helicobacter sp 2.43.4.1.2.3.10573 OTU 1 seq prokMSA_id:11150 L35522.1 Alvinella pompejana epibiont 2.43.4.1.2.3.10575 OTU 2 seqs prokMSA_id:42495 AF297632.2 Candidatus Wolinella africanus isolate str. SA-5 prokMSA_id:47305 AF297633.2 Candidatus Wolinella africanus isolate str. SA-7 2.43.4.1.2.3.10576 OTU 1 seq prokMSA_id:11085 AF142585.1 Helicobacter sp. 'liver 3' str. liver 3 2.43.4.1.2.3.10578 OTU 2 seqs prokMSA_id:36248 AF468769.1 clone 33-FL98B99 prokMSA_id:100516 AY280406.1 exterior deep-sea hydrothermal vent sulfide chimney Juan de Fuca Ridge Pacific Ocean clone 2.43.4.1.2.3.10580 OTU 1 seq prokMSA_id:37024 AF292381.1 Helicobacter sp. 'Solnick 9A1-T71' str. Solnick 9A1-T71 'Solnick 2.43.4.1.2.3.10588 OTU 1 seq prokMSA_id:11097 AF142931.1 clone PENDANT-19 2.43.4.1.2.3.10589 OTU 1 seq prokMSA_id:11098 AF142923.1 clone PENDANT-10 2.43.4.1.2.3.10590 OTU 1 seq prokMSA_id:78387 AB089113.1 termite gut homogenate clone Rs-H40 proteobacterium 2.43.4.1.2.3.10602 OTU 1 seq prokMSA_id:43302 AF327023.1 Helicobacter sp. MN-1 2.43.4.1.2.3.10606 OTU 1 seq prokMSA_id:40838 AF299123.1 S17sBac25 complete clone 2.43.4.1.2.3.10612 OTU 1 seq prokMSA_id:57469 AJ441209.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 64 proteobacterium 2.43.4.1.2.3.10614 OTU 1 seq prokMSA_id:79600 AJ431216.1 strain isolate str. BHI80-49 2.43.4.1.2.3.10618 OTU 1 seq prokMSA_id:29260 AF224799.1 clone Car13a 2.43.4.1.2.3.10620 OTU 1 seq prokMSA_id:57470 AJ441207.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 18 proteobacterium 2.43.4.1.2.4 sf_5 1 seq 2.43.4.1.2.4.10610 OTU 1 seq prokMSA_id:57467 AJ441211.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 89 proteobacterium 2.43.4.1.3 Unclassified 127 seqs 2.43.4.1.3.1 sf_1 127 seqs 2.43.4.1.3.1.10384 OTU 1 seq prokMSA_id:34431 AF367484.1 deep-sea hydrothermal vent clone VC1.2-cl06 2.43.4.1.3.1.10389 OTU 1 seq prokMSA_id:29761 AF224795.1 clone Car2a 2.43.4.1.3.1.10392 OTU 1 seq prokMSA_id:45923 AF468742.1 clone 33-PA8B00 2.43.4.1.3.1.10405 OTU 1 seq prokMSA_id:67791 AF420346.1 hydrothermal sediment clone AF420346 2.43.4.1.3.1.10407 OTU 1 seq prokMSA_id:67795 AF420342.1 hydrothermal sediment clone AF420342 2.43.4.1.3.1.10414 OTU 1 seq prokMSA_id:82067 AY218582.1 penguin droppings sediments clone KD2-34 2.43.4.1.3.1.10426 OTU 1 seq prokMSA_id:79345 AJ431213.1 strain isolate str. BHI60-53 2.43.4.1.3.1.10427 OTU 4 seqs prokMSA_id:61855 AF449253.1 Riftia pachyptila's tube clone R76-B151 prokMSA_id:61872 AF449237.1 Riftia pachyptila's tube clone R103-B43 prokMSA_id:61874 AF449236.1 Riftia pachyptila's tube clone R103-B37 prokMSA_id:103644 AY672515.1 hydrothermal vent 9 degrees North East Rise Pacific Ocean clone CH3_17_BAC_16SrRNA_9N_EPR 2.43.4.1.3.1.10445 OTU 1 seq prokMSA_id:11103 U15106.1 hydrothermal vent clone PVB_OTU_6 2.43.4.1.3.1.10458 OTU 1 seq prokMSA_id:11112 AF047627.1 Sulphur River Parker Cave Kentucky clone SRang1.23 2.43.4.1.3.1.10466 OTU 1 seq prokMSA_id:38258 AF121091.1 obtained marine fluids near Cascadia Margin clone ODPB-B9 2.43.4.1.3.1.10472 OTU 1 seq prokMSA_id:73836 AF367490.1 deep-sea hydrothermal vent clone VC1.2-cl26 2.43.4.1.3.1.10473 OTU 1 seq prokMSA_id:11127 U29081.1 Rimicaris exoculata ectosymbiont 2.43.4.1.3.1.10475 OTU 1 seq prokMSA_id:67782 AF420359.1 hydrothermal sediment clone AF420359 2.43.4.1.3.1.10480 OTU 1 seq prokMSA_id:57473 AJ441204.1 Paralvinella palmiformis mucus secretions clone P. palm C 84 proteobacterium 2.43.4.1.3.1.10489 OTU 4 seqs prokMSA_id:17634 AF468755.1 clone 33-FL69B98 prokMSA_id:46918 AF468756.1 clone 33-FL76B98 prokMSA_id:48014 AF468763.1 clone 33-FL37B99 prokMSA_id:53082 AF299121.1 S17sBac16 complete clone 2.43.4.1.3.1.10497 OTU 1 seq prokMSA_id:83596 AY261811.1 UASB reactor granular sludge clone PD-UASB-2 proteobacterium 2.43.4.1.3.1.10505 OTU 1 seq prokMSA_id:11129 AF068783.2 hydrothermal vent clone VC2.1 Bac1 2.43.4.1.3.1.10513 OTU 1 seq prokMSA_id:11136 AF068805.2 hydrothermal vent clone VC2.1 Bac31 2.43.4.1.3.1.10516 OTU 1 seq prokMSA_id:46541 AF468700.1 clone 33-PA72B98 2.43.4.1.3.1.10521 OTU 1 seq prokMSA_id:18072 AF468731.1 clone 33-PA14B00 2.43.4.1.3.1.10528 OTU 2 seqs prokMSA_id:31948 AF468759.1 clone 33-FL14B98 prokMSA_id:38225 AF468716.1 clone 33-PA75B98 2.43.4.1.3.1.10530 OTU 34 seqs prokMSA_id:11140 AB015517.1 deep-sea sediment clone BD1-4 prokMSA_id:11141 AB015531.1 deep-sea sediment clone BD2-1 prokMSA_id:11145 AB013260.1 deep-sea sediment clone NKB8 prokMSA_id:11146 AB013261.1 deep-sea sediment clone NKB9 prokMSA_id:11148 AB013264.1 deep-sea sediment clone NKB12 prokMSA_id:11149 AB015258.1 deepest cold-seep area Japan Trench clone JTB315 proteobacterium prokMSA_id:55437 AJ441208.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 55 proteobacterium prokMSA_id:57471 AJ441206.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 113 proteobacterium prokMSA_id:57472 AJ441205.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 114 proteobacterium prokMSA_id:61867 AF449241.1 Riftia pachyptila's tube clone R76-A19 prokMSA_id:61869 AF449240.1 Riftia pachyptila's tube clone R103-B76 prokMSA_id:61875 AF449234.1 Riftia pachyptila's tube clone R103-B22 prokMSA_id:61876 AF449233.1 Riftia pachyptila's tube clone R103-B19 prokMSA_id:67787 AF420351.1 hydrothermal sediment clone AF420351 prokMSA_id:67790 AF420347.1 hydrothermal sediment clone AF420347.1 prokMSA_id:67793 AF420344.1 hydrothermal sediment clone AF420344 prokMSA_id:67794 AF420343.1 hydrothermal sediment clone AF420343 prokMSA_id:73787 AF420362.1 hydrothermal sediment clone AF420362 prokMSA_id:79175 AJ431222.1 strain isolate str. BHI80-16 prokMSA_id:79240 AJ431221.1 strain isolate str. BHI60-14 prokMSA_id:79418 AJ431217.1 strain isolate str. BHI60-9 prokMSA_id:79474 AJ431225.1 strain isolate str. Dex80-5 prokMSA_id:79591 AB099998.1 inactive deep-sea hydrothermal vent chimneys clone IndB1-30 prokMSA_id:79598 AJ431220.1 strain isolate str. Dex80-27 prokMSA_id:82535 AY197375.1 Guaymas Basin hydrothermal vent sediments clone B01R002 prokMSA_id:83351 AY197378.1 Guaymas Basin hydrothermal vent sediments clone B01R006 prokMSA_id:83924 AY197410.1 Guaymas Basin hydrothermal vent sediments clone B03P029 prokMSA_id:96301 AY225621.1 pumice fragments exposed to Mid-Atlantic Ridge vent clone AT-pp46 prokMSA_id:103160 AY531568.1 Indian Ocean hydrothermal vent clone SF_C23-H2 prokMSA_id:103257 AY531581.1 Indian Ocean hydrothermal vent clone SF_C23-A6_shell prokMSA_id:104193 AY672531.1 hydrothermal vent 9 degrees North East Rise Pacific Ocean clone CH5_6_BAC_16SrRNA_9N_EPR prokMSA_id:112176 AY704398.1 oceanic crust clone FS275-77B-03 prokMSA_id:112847 AB189379.1 cold seep sediment clone JT75-317 prokMSA_id:113081 AB189356.1 cold seep sediment clone JT75-102 2.43.4.1.3.1.10535 OTU 1 seq prokMSA_id:30295 AF407391.1 MCB-contaminated groundwater-treating reactor clone RA9C8 2.43.4.1.3.1.10543 OTU 7 seqs prokMSA_id:11093 U15102.1 hydrothermal vent clone PVB_63 prokMSA_id:11095 U15105.1 hydrothermal vent clone PVB_55 prokMSA_id:11096 U15101.1 hydrothermal vent clone PVB_OTU_2 prokMSA_id:11099 U15104.1 hydrothermal vent clone PVB_12 prokMSA_id:11101 U15103.1 hydrothermal vent clone PVB_10 prokMSA_id:11102 U15100.1 hydrothermal vent clone PVB_7 prokMSA_id:103892 AB189712.1 Alviniconcha sp. gill symbiont 2.43.4.1.3.1.10544 OTU 5 seqs prokMSA_id:11094 U15107.1 hydrothermal vent clone PVB_OTU_8 prokMSA_id:55238 AF420352.1 hydrothermal sediment clone AF420352 prokMSA_id:70730 AF367492.1 deep-sea hydrothermal vent clone VC1.2-cl32 prokMSA_id:81592 AB088431.1 Sulfurimonas autotrophica str. OK10 prokMSA_id:86080 AY197379.1 Guaymas Basin hydrothermal vent sediments clone B01R008 2.43.4.1.3.1.10550 OTU 43 seqs prokMSA_id:20917 AB053951.1 Sulfuricurvum kujiense str. YK-1 prokMSA_id:21738 AB030601.1 groundwater clone 1043 prokMSA_id:22082 AB030605.1 groundwater clone 1028 prokMSA_id:27290 AJ307940.1 derived microbial 'pearl'- community clone sipK119 prokMSA_id:27914 AB030602.1 groundwater clone 1054 prokMSA_id:34308 AB030600.1 groundwater clone 1005 prokMSA_id:34916 AB030608.1 groundwater clone 1033 prokMSA_id:36148 AB030604.1 groundwater clone 1008 prokMSA_id:37769 AB030606.1 groundwater clone 1049 prokMSA_id:40252 AB080643.1 Sulfuricurvum kujiense str. YK-2 prokMSA_id:41311 AB080645.1 Sulfuricurvum kujiense str. YK-4 prokMSA_id:47752 AB030607.1 groundwater clone 1011 prokMSA_id:48041 AB030603.1 groundwater clone 1047 prokMSA_id:49390 AB080644.1 Sulfuricurvum kujiense str. YK-3 prokMSA_id:51819 AB030609.1 groundwater clone 1061 prokMSA_id:62394 AF529123.1 trichloroethene-contaminated site clone FTLM3 proteobacterium prokMSA_id:62416 AF529098.1 trichloroethene-contaminated site clone FTL212 proteobacterium prokMSA_id:66097 AB074955.1 clone:KB2 clone KB2 prokMSA_id:66098 AB074954.1 clone:KB8 clone KB8 prokMSA_id:85203 AY208807.1 cave microbial mats clone LKC2.57-8 prokMSA_id:93473 AY191477.1 microbial mat sulfidic cave spring clone LKC1.58_1 prokMSA_id:93579 AY191472.1 microbial mat sulfidic cave spring clone LKC1.57_4 prokMSA_id:93636 AY191470.1 microbial mat sulfidic cave spring clone LKC1.57_2 prokMSA_id:100502 AY191479.1 microbial mat sulfidic cave spring clone LKC1.114_2 prokMSA_id:100755 AJ704365.1 sulfidic surface waters whitish biomaterial with macroscopic appearance reminiscent prokMSA_id:103936 AY191466.1 microbial mat sulfidic cave spring clone LKC1.21_1 prokMSA_id:104251 AY212742.1 water 20 m upstream manure clone 4up prokMSA_id:109648 AY510197.1 microbial mat cave sulfidic spring clone LKC3_57B.41 prokMSA_id:109873 AY510191.1 microbial mat cave sulfidic spring clone LKC3_19.39 prokMSA_id:109962 AY510182.1 microbial mat cave sulfidic spring clone LKC3_127B.2 prokMSA_id:109996 AY510188.1 microbial mat cave sulfidic spring clone LKC3_57B.17 prokMSA_id:110026 AY510181.1 microbial mat cave sulfidic spring clone LKC3_22.53 prokMSA_id:110028 AY510180.1 microbial mat cave sulfidic spring clone LKC3_22.54 prokMSA_id:110035 AY510167.1 microbial mat cave sulfidic spring clone LKC3_22.72 prokMSA_id:110095 AY510190.1 microbial mat cave sulfidic spring clone LKC3_57C.15 prokMSA_id:110274 AY510186.1 microbial mat cave sulfidic spring clone LKC3_198.15 prokMSA_id:110459 AY510196.1 microbial mat cave sulfidic spring clone LKC3_57B.2 prokMSA_id:110537 AY510184.1 microbial mat cave sulfidic spring clone LKC3_57.20 prokMSA_id:110593 AY510185.1 microbial mat cave sulfidic spring clone LKC3_198.20 prokMSA_id:110839 AY510192.1 microbial mat cave sulfidic spring clone LKC3_22.81 prokMSA_id:110849 AY510195.1 microbial mat cave sulfidic spring clone LKC3_57C.33 prokMSA_id:110909 AY510183.1 microbial mat cave sulfidic spring clone LKC3_22.5 prokMSA_id:111128 AY510194.1 microbial mat cave sulfidic spring clone LKC3_57B.49 2.43.4.1.3.1.10577 OTU 1 seq prokMSA_id:34712 AF468776.1 clone 33-FL99B00 2.43.4.1.3.1.10582 OTU 1 seq prokMSA_id:20059 AJ132737.1 hydrothermal vent clone Top-147 2.43.4.1.3.1.10591 OTU 1 seq prokMSA_id:19590 AF367494.1 clone VC1.2-cl49 2.43.4.1.3.1.10593 OTU 1 seq prokMSA_id:43869 AF367495.1 deep-sea hydrothermal vent clone VC1.2-cl50 2.43.4.1.3.1.10595 OTU 1 seq prokMSA_id:40382 AF121088.1 obtained marine fluids near Cascadia Margin clone ODPB-B3 2.43.4.1.3.1.10596 OTU 1 seq prokMSA_id:48010 AF355050.1 marine clone Arctic96B-13 2.43.4.1.3.1.10599 OTU 1 seq prokMSA_id:32993 AF468782.1 clone 33-FL51B00 2.43.4.1.3.1.10622 OTU 1 seq prokMSA_id:33082 AF424297.1 clone MERTZ_2CM_162 2.43.4.2 Nautiliales 14 seqs 2.43.4.2.1 Nautiliaceae 14 seqs 2.43.4.2.1.1 sf_1 14 seqs 2.43.4.2.1.1.10416 OTU 6 seqs prokMSA_id:11151 AF068789.2 hydrothermal vent clone VC2.1 Bac8 prokMSA_id:11152 AF068795.2 hydrothermal vent clone VC2.1 Bac17 prokMSA_id:11153 AF068796.2 hydrothermal vent clone VC2.1 Bac19 prokMSA_id:11154 AF068797.2 hydrothermal vent clone VC2.1 Bac20 prokMSA_id:11155 AF068804.2 hydrothermal vent clone VC2.1 Bac30 prokMSA_id:11156 AF068812.2 hydrothermal vent clone VC2.1 Bac12 2.43.4.2.1.1.10477 OTU 1 seq prokMSA_id:47967 AF299130.1 S17sBac5 complete clone 2.43.4.2.1.1.10490 OTU 1 seq prokMSA_id:54845 AF299126.1 S17sBac21 complete clone 2.43.4.2.1.1.10492 OTU 1 seq prokMSA_id:51291 AF357197.1 Nautilia sp. Am-H 2.43.4.2.1.1.10515 OTU 3 seqs prokMSA_id:17403 AF299127.1 S17sBac3 complete clone prokMSA_id:40818 AF299128.1 S17sBac34 complete clone prokMSA_id:42752 AF299131.1 S17sBac8 complete clone 2.43.4.2.1.1.10517 OTU 2 seqs prokMSA_id:35810 AF299124.1 S17sBac14 complete clone prokMSA_id:36523 AF299129.1 S17sBac4 complete clone 2.43.5 Gammaproteobacteria 5278 seqs 2.43.5.1 Acidithiobacillales 54 seqs 2.43.5.1.1 Acidithiobacillaceae 54 seqs 2.43.5.1.1.1 sf_1 54 seqs 2.43.5.1.1.1.8180 OTU 1 seq prokMSA_id:47714 AY077611.1 Canada: river snow South Saskatchewan River isolate str. F8 F8 2.43.5.1.1.1.8238 OTU 1 seq prokMSA_id:51220 AJ292674.1 PCB-polluted soil clone WD280 2.43.5.1.1.1.8249 OTU 1 seq prokMSA_id:66569 AJ459800.1 Acidithiobacillus ferrooxidans str. DSM 2392 2.43.5.1.1.1.8261 OTU 1 seq prokMSA_id:7628 L25709.1 Solemya reidi symbiont 2 2.43.5.1.1.1.8304 OTU 1 seq prokMSA_id:7642 AB015250.1 deepest cold-seep area Japan Trench clone JTB35 proteobacterium 2.43.5.1.1.1.8320 OTU 1 seq prokMSA_id:58315 AF543507.1 acid mine drainage clone BA11 2.43.5.1.1.1.8360 OTU 1 seq prokMSA_id:17673 AJ313020.1 hexane degrading biofilter isolate MN 154.3 2.43.5.1.1.1.8495 OTU 1 seq prokMSA_id:32422 AJ243934.3 Acidithiobacillus cuprithermicus 2.43.5.1.1.1.8552 OTU 25 seqs prokMSA_id:7484 X75266.1 Acidithiobacillus ferrooxidans prokMSA_id:7487 Y11595.1 NFe4 prokMSA_id:7489 X86769.1 acid mine drainage clone OS1 prokMSA_id:7491 X75267.1 Acidithiobacillus ferrooxidans prokMSA_id:7500 X75268.1 Acidithiobacillus ferrooxidans prokMSA_id:18606 AF376019.1 Acidithiobacillus sp. str. NO-25 prokMSA_id:19600 AF407404.1 MCB-contaminated groundwater-treating reactor clone RA13C4 prokMSA_id:23599 AJ278719.1 Acidithiobacillus ferrooxidans str. ATCC33020 prokMSA_id:26996 AJ278721.1 Acidithiobacillus ferrooxidans str. SS6 prokMSA_id:29211 AF407402.1 MCB-contaminated groundwater-treating reactor clone RA13C22 prokMSA_id:29934 AF376018.1 Acidithiobacillus sp. str. NO-8 prokMSA_id:31580 AF376020.1 Acidithiobacillus sp. str. NO-37 prokMSA_id:38200 AF329204.1 Acidithiobacillus sp. str. SSP prokMSA_id:38412 AF407410.1 MCB-contaminated groundwater-treating reactor clone RB13C4 prokMSA_id:43942 AF407401.1 MCB-contaminated groundwater-treating reactor clone RA13C21 prokMSA_id:45494 AF376017.1 Acidithiobacillus sp. str. KSC1 prokMSA_id:53234 AJ278722.1 Acidithiobacillus ferrooxidans str. K2 prokMSA_id:53334 AJ278723.1 Acidithiobacillus ferrooxidans str. D2 prokMSA_id:67351 AJ457808.1 Acidithiobacillus ferrooxidans str. ATCC19859 prokMSA_id:67355 AJ457804.1 Acidithiobacillus ferrooxidans str. CC1 prokMSA_id:67356 AJ457806.1 Acidithiobacillus ferrooxidans str. BRGM1 prokMSA_id:70237 AJ278718.1 Acidithiobacillus ferrooxidans str. ATCC23270T prokMSA_id:79379 AF465604.1 Acidithiobacillus ferrooxidans str. ATCC23270 prokMSA_id:79580 AF465606.1 Acidithiobacillus ferrooxidans str. TFI prokMSA_id:99112 AF465608.1 Acidithiobacillus ferrooxidans str. TFY 2.43.5.1.1.1.8704 OTU 1 seq prokMSA_id:7760 AF154088.1 hydrocarbon seep clone BPC028 2.43.5.1.1.1.8913 OTU 1 seq prokMSA_id:77645 AJ535246.1 marine sediment above hydrate ridge clone Hyd89-87 proteobacterium 2.43.5.1.1.1.8951 OTU 8 seqs prokMSA_id:7480 X72851.1 Acidithiobacillus caldus prokMSA_id:7494 Z29975.1 Acidithiobacillus caldus prokMSA_id:7498 AF137369.1 Acidithiobacillus caldus str. TC1 prokMSA_id:7499 AB023405.1 Acidithiobacillus caldus str. GO-1 prokMSA_id:48511 AF460986.1 Acidithiobacillus caldus clone P5-10 prokMSA_id:48523 AF226672.1 enrichment clone ECC44 prokMSA_id:65356 AF513711.1 Acidithiobacillus caldus str. MT1 prokMSA_id:103598 AY427958.1 Acidithiobacillus caldus str. MTH-04 2.43.5.1.1.1.9204 OTU 2 seqs prokMSA_id:7495 AF023264.1 Thermithiobacillus sp. prokMSA_id:66601 AJ459801.1 Thermithiobacillus tepidarius str. DSM 3134 2.43.5.1.1.1.9224 OTU 8 seqs prokMSA_id:7482 Y11596.1 Acidithiobacillus thiooxidans prokMSA_id:7483 X98210.1 Acidithiobacillus sp. prokMSA_id:7485 X75269.1 Acidithiobacillus thiooxidans prokMSA_id:22453 AB080298.1 Acidithiobacillus sp. str. SH prokMSA_id:56606 AJ459804.1 Acidithiobacillus albertensis str. DSM 14366 prokMSA_id:105417 AY495961.1 Acidithiobacillus thiooxidans str. WJSo prokMSA_id:109510 AY830898.1 Acidithiobacillus thiooxidans str. OGCS3 prokMSA_id:109592 AY830901.1 Acidithiobacillus thiooxidans str. OYCS3 2.43.5.1.1.1.9497 OTU 1 seq prokMSA_id:53544 AF362022.1 Acidithiobacillus ferrooxidans str. ATCC 19859 2.43.5.10 GAO cluster 10 seqs 2.43.5.10.1 Unclassified 10 seqs 2.43.5.10.1.1 sf_1 10 seqs 2.43.5.10.1.1.8735 OTU 1 seq prokMSA_id:29624 AF314424.1 aerobic phosphorus-removal ecosystem clone PHOS-HE54 2.43.5.10.1.1.8980 OTU 1 seq prokMSA_id:57791 AY098909.1 activated sludge clone SBRL2_19 2.43.5.10.1.1.9008 OTU 6 seqs prokMSA_id:56539 AF361094.1 activated sludge clone SBRQ152 prokMSA_id:56552 AF361092.1 activated sludge clone SBRQ157 prokMSA_id:58384 AF361093.1 activated sludge clone SBRQ196 prokMSA_id:58385 AF361091.1 activated sludge clone SBRQ191 prokMSA_id:58386 AF361090.1 activated sludge clone SBRQ185 prokMSA_id:58387 AF361089.1 activated sludge clone SBRQ171 2.43.5.10.1.1.9059 OTU 1 seq prokMSA_id:58382 AF361096.1 activated sludge clone SBRH10 2.43.5.10.1.1.9468 OTU 1 seq prokMSA_id:57801 AY098900.1 activated sludge clone SBRL2_40 2.43.5.11 Legionellales 129 seqs 2.43.5.11.1 Coxiellaceae 35 seqs 2.43.5.11.1.1 sf_3 35 seqs 2.43.5.11.1.1.7893 OTU 1 seq prokMSA_id:36918 AJ252651.1 Agricultural soil SC-I-71 () clone SC-I-71 bacterium 2.43.5.11.1.1.8198 OTU 1 seq prokMSA_id:50747 AF327558.1 Folsomia candida symbiont 2.43.5.11.1.1.8256 OTU 1 seq prokMSA_id:46260 AB001521.1 Ornithodoros moubata symbiont 2.43.5.11.1.1.8296 OTU 1 seq prokMSA_id:8026 AB015255.1 deepest cold-seep area Japan Trench clone JTB256 proteobacterium 2.43.5.11.1.1.8298 OTU 1 seq prokMSA_id:8028 U97547.1 Rickettsiella grylli 2.43.5.11.1.1.8378 OTU 1 seq prokMSA_id:74504 AF235121.1 North Sea clone KTc0924 2.43.5.11.1.1.8457 OTU 1 seq prokMSA_id:47939 AJ240918.1 5' clone CHAB-XI-27 2.43.5.11.1.1.8568 OTU 1 seq prokMSA_id:16391 AF383621.1 Rickettsiella sp. str. GSU 2.43.5.11.1.1.8663 OTU 10 seqs prokMSA_id:19290 AB058911.1 Legionella sp. IUB43 prokMSA_id:19657 AB058909.1 Legionella sp. IA55 prokMSA_id:22506 AB058916.1 Legionella sp. OA32 prokMSA_id:24832 AB058915.1 Legionella sp. OUA34 prokMSA_id:33240 AB058908.1 Legionella sp. IUA36 prokMSA_id:41926 AB058917.1 Legionella sp. OI36 prokMSA_id:45382 AB058907.1 Legionella sp. IY2 prokMSA_id:49165 AB058910.1 Legionella sp. II29 prokMSA_id:49724 AB058914.1 Legionella sp. OY6 prokMSA_id:51890 AB058918.1 Legionella sp. OUB41 2.43.5.11.1.1.8771 OTU 11 seqs prokMSA_id:8018 D89795.1 Coxiella burnetii str. 58T prokMSA_id:8019 D89796.1 Coxiella burnetii str. 50F prokMSA_id:8020 D89797.1 Coxiella burnetii str. Q212 prokMSA_id:8021 D89798.1 Coxiella burnetii str. VR730 prokMSA_id:8022 D89799.1 Coxiella burnetii str. 1M prokMSA_id:8023 D89800.1 Coxiella burnetii str. 27M prokMSA_id:8024 D89791.1 Coxiella burnetii str. Ohio prokMSA_id:8025 D89792.1 Coxiella burnetii str. 607 prokMSA_id:83477 NC_002971.2 Coxiella burnetii RSA 493 prokMSA_id:84670 AE016960.1 Coxiella burnetii str. RSA 493 prokMSA_id:103828 AY342037.1 Coxiella burnetii str. VR145 2.43.5.11.1.1.8969 OTU 1 seq prokMSA_id:79079 AJ536861.1 uranium mining waste pile soil sample clone JG30-KF-C15 proteobacterium 2.43.5.11.1.1.9076 OTU 1 seq prokMSA_id:73506 AF286124.1 Cecidotrioza sozanica 2.43.5.11.1.1.9171 OTU 1 seq prokMSA_id:8017 D84559.1 Rhipicephalus sanguineus symbiont 2.43.5.11.1.1.9198 OTU 2 seqs prokMSA_id:71246 AJ295651.1 uranium mining waste pile clone KF-JG30-B15 KF-JG30-B15 prokMSA_id:78512 AJ536872.1 uranium mining waste pile soil sample clone JG30a-KF-94 proteobacterium 2.43.5.11.1.1.9444 OTU 1 seq prokMSA_id:63249 AF523974.1 forested wetland clone FW23 2.43.5.11.2 Legionellaceae 92 seqs 2.43.5.11.2.1 sf_1 92 seqs 2.43.5.11.2.1.8168 OTU 1 seq prokMSA_id:8013 Z32667.1 Legionella jordansis 2.43.5.11.2.1.8181 OTU 1 seq prokMSA_id:7911 Z32639.1 Legionella gormanii 2.43.5.11.2.1.8184 OTU 1 seq prokMSA_id:7912 Z49738.1 Legionella wadsworthii 2.43.5.11.2.1.8190 OTU 1 seq prokMSA_id:7915 Z49720.1 Legionella cherrii 2.43.5.11.2.1.8193 OTU 1 seq prokMSA_id:7916 Z49731.1 Legionella parisiensis 2.43.5.11.2.1.8199 OTU 1 seq prokMSA_id:7917 U59697.1 Legionella parisiensis str. Lyon96010011; FLP2; ATCC700174 2.43.5.11.2.1.8220 OTU 8 seqs prokMSA_id:7913 X73401.1 Legionella wadsworthii prokMSA_id:7914 X73404.1 Legionella cherrii prokMSA_id:7921 X73394.1 Legionella anisa prokMSA_id:7928 X73399.1 Legionella sainthelensi prokMSA_id:7933 X73407.1 Legionella cincinatiensis prokMSA_id:7934 X73400.1 Legionella steigerwaltii prokMSA_id:7960 X73402.1 Legionella pneumophila prokMSA_id:8007 X73403.1 Legionella brunensis 2.43.5.11.2.1.8235 OTU 1 seq prokMSA_id:7920 AF057017.1 Legionella sp. str. FM-1-679 2.43.5.11.2.1.8252 OTU 1 seq prokMSA_id:7932 Z49721.1 Legionella cicinatiensis 2.43.5.11.2.1.8259 OTU 1 seq prokMSA_id:7927 Z49734.1 Legionella sainthelensi 2.43.5.11.2.1.8274 OTU 1 seq prokMSA_id:7929 Z49725.1 Legionella gratiana 2.43.5.11.2.1.8292 OTU 1 seq prokMSA_id:7931 Z49735.1 Legionella santicrucis 2.43.5.11.2.1.8307 OTU 1 seq prokMSA_id:7935 Z49737.1 Legionella steigerwaltii 2.43.5.11.2.1.8337 OTU 4 seqs prokMSA_id:7991 Z32641.1 Tatlockia maceachernii prokMSA_id:7993 X60081.1 Tatlockia maceachernii prokMSA_id:48785 AF227161.1 Tatlockia maceachernii str. ATCC35300 prokMSA_id:52462 AF227162.1 Tatlockia micdadei str. ATCC33218 2.43.5.11.2.1.8372 OTU 1 seq prokMSA_id:7944 AF050530.1 contaminated aquifer clone WCHA1-85 2.43.5.11.2.1.8373 OTU 1 seq prokMSA_id:7946 X97363.1 Legionella sp. 2.43.5.11.2.1.8417 OTU 1 seq prokMSA_id:7954 Z49729.1 Legionella moravica 2.43.5.11.2.1.8444 OTU 1 seq prokMSA_id:7958 Z49732.1 Legionella quateirensis 2.43.5.11.2.1.8516 OTU 1 seq prokMSA_id:7963 AF122886.1 Legionella waltersii str. 2074-AUS-E; ATCC 51914 2.43.5.11.2.1.8544 OTU 1 seq prokMSA_id:7972 Z49722.1 Legionella fairfieldensis 2.43.5.11.2.1.8547 OTU 1 seq prokMSA_id:7973 Z49727.1 Legionella lansingensis 2.43.5.11.2.1.8550 OTU 1 seq prokMSA_id:7974 Z49717.1 Legionella birminghamiensis 2.43.5.11.2.1.8698 OTU 1 seq prokMSA_id:73127 AY038724.1 epilithon clone TAF-B96 2.43.5.11.2.1.8836 OTU 29 seqs prokMSA_id:7918 Z32635.1 Legionella anisa prokMSA_id:7937 Z49741.1 Legionella lytica prokMSA_id:7938 X66835.1 Legionella lytica prokMSA_id:7939 X97366.2 Legionella sp. prokMSA_id:7940 X97364.1 Legionella lytica prokMSA_id:7941 U44909.1 Legionella-like amoebal pathogen 2 prokMSA_id:7942 U44910.1 Legionella-like amoebal pathogen 7 prokMSA_id:7945 X97358.1 Legionella lytica prokMSA_id:7947 X97362.1 Legionella sp. prokMSA_id:7948 X97356.1 Legionella sp. prokMSA_id:7949 X97357.2 Legionella sp. prokMSA_id:7950 X97359.1 Legionella sp. prokMSA_id:7951 X97365.1 Legionella sp. prokMSA_id:7952 X97360.1 Legionella sp. prokMSA_id:7953 X60080.1 Legionella species prokMSA_id:7962 AF122885.1 Legionella pneumophila subsp. pascullei str. U8W; ATCC 33737 subsp. prokMSA_id:8001 Z32643.1 Legionella rubrilucens prokMSA_id:8004 Z32638.1 Legionella erythra prokMSA_id:51847 AF129524.1 Legionella pneumophila str. E5C1; ATCC700713 prokMSA_id:58869 AF424887.1 Legionella busanensis str. K9951 prokMSA_id:62834 AJ496383.1 Legionella pneumophila serogroup 6 prokMSA_id:98961 AB186839.1 polychlorinated dioxin dechlorinating microcosm clone TSAF31 prokMSA_id:99499 NC_002942.5 Legionella subsp. pneumophila str. Philadelphia 1 prokMSA_id:101406 AE017354.1 Legionella subsp. pneumophila str. Philadelphia 1 prokMSA_id:103234 CR628336.1 Legionella pneumophila str. Paris prokMSA_id:103360 CR628337.1 Legionella pneumophila str. Lens prokMSA_id:104421 NC_006368.1 Legionella pneumophila str. Paris prokMSA_id:104444 AY744776.1 Legionella anisa str. ATCC 35292 prokMSA_id:104565 NC_006369.1 Legionella pneumophila str. Lens 2.43.5.11.2.1.8865 OTU 1 seq prokMSA_id:80375 AF468229.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-23 2.43.5.11.2.1.8899 OTU 1 seq prokMSA_id:7955 Z49739.1 Legionella worsliensis 2.43.5.11.2.1.8901 OTU 1 seq prokMSA_id:7957 U66104.1 Legionella-like amoebal pathogen 14 isolate str. LLAP-14 pathogen 2.43.5.11.2.1.8937 OTU 1 seq prokMSA_id:7961 AF122883.1 Legionella gresilensis str. Greoux 11 D13; ATCC 700509 2.43.5.11.2.1.9038 OTU 1 seq prokMSA_id:21751 AY050582.1 MCB-contaminated groundwater-treating reactor clone GOUTA10 2.43.5.11.2.1.9042 OTU 2 seqs prokMSA_id:7995 U64034.1 Legionella-like amoebal pathogen isolate str. LLAP 1 prokMSA_id:7996 X97355.1 Legionella sp. 2.43.5.11.2.1.9079 OTU 1 seq prokMSA_id:7975 AF050529.1 contaminated aquifer clone WCHA1-76 2.43.5.11.2.1.9080 OTU 1 seq prokMSA_id:7976 Z49733.1 Legionella quinlivanii 2.43.5.11.2.1.9084 OTU 1 seq prokMSA_id:7977 Z49723.1 Legionella geestiana 2.43.5.11.2.1.9085 OTU 1 seq prokMSA_id:7978 Z49716.1 Legionella adelaidensis 2.43.5.11.2.1.9099 OTU 1 seq prokMSA_id:8002 X73398.1 Legionella rubrilucens 2.43.5.11.2.1.9104 OTU 1 seq prokMSA_id:8008 AF122884.1 Legionella beliardensis str. Montbeliard A1 2.43.5.11.2.1.9112 OTU 1 seq prokMSA_id:7980 X73397.1 Legionella oakridgenesis 2.43.5.11.2.1.9113 OTU 1 seq prokMSA_id:7981 Z32642.1 Legionella oakridgenesis 2.43.5.11.2.1.9115 OTU 1 seq prokMSA_id:7982 Z49730.1 Legionella nautarum 2.43.5.11.2.1.9117 OTU 1 seq prokMSA_id:7983 X73408.1 Legionella israelensis 2.43.5.11.2.1.9136 OTU 1 seq prokMSA_id:8010 X73409.1 Legionella jamestowniensis 2.43.5.11.2.1.9140 OTU 1 seq prokMSA_id:8012 Z49726.1 Legionella jamestownensis 2.43.5.11.2.1.9146 OTU 1 seq prokMSA_id:7984 Z32640.1 Legionella israelensis 2.43.5.11.2.1.9168 OTU 1 seq prokMSA_id:8014 X73396.1 Legionella jordansis 2.43.5.11.2.1.9244 OTU 2 seqs prokMSA_id:7922 Z49719.1 Legionella bozemanii prokMSA_id:7924 Z49718.1 Legionella bozemanii 2.43.5.11.2.1.9253 OTU 1 seq prokMSA_id:52016 AY050590.1 MCB-contaminated groundwater-treating reactor clone GOUTB2 2.43.5.11.2.1.9489 OTU 1 seq prokMSA_id:45765 AF418944.1 USA: Colorado Fort collins Horsetooth Reservoir clone HTA4 2.43.5.11.2.1.9612 OTU 1 seq prokMSA_id:7906 X73405.1 Fluoribacter dumoffii 2.43.5.11.2.1.9616 OTU 1 seq prokMSA_id:7907 Z32637.1 Legionella dumoffii 2.43.5.11.2.1.9617 OTU 2 seqs prokMSA_id:7997 X73395.1 Legionella feeleii prokMSA_id:7998 X73406.1 Legionella feeleii 2.43.5.11.2.1.9621 OTU 1 seq prokMSA_id:7908 X97361.1 Legionella sp. 2.43.5.11.3 Unclassified 2 seqs 2.43.5.11.3.1 sf_1 1 seq 2.43.5.11.3.1.9418 OTU 1 seq prokMSA_id:75050 AJ518784.1 uranium mining waste pile clone JG37-AG-14 proteobacterium 2.43.5.11.3.2 sf_3 1 seq 2.43.5.11.3.2.8587 OTU 1 seq prokMSA_id:55626 AF526927.1 Mars Odyssey Orbiter and encapsulation facility clone T5-3 2.43.5.12 Methylococcales 86 seqs 2.43.5.12.1 Methylococcaceae 78 seqs 2.43.5.12.1.1 sf_1 78 seqs 2.43.5.12.1.1.8186 OTU 1 seq prokMSA_id:8100 U05595.1 methanotrophic symbiont of Louisiana Slope mussel gill 2.43.5.12.1.1.8197 OTU 1 seq prokMSA_id:33884 AJ299979.1 2.43.5.12.1.1.8219 OTU 1 seq prokMSA_id:17922 AF177308.1 type I methanotroph extracted landfill soil clone T1-04 2.43.5.12.1.1.8243 OTU 2 seqs prokMSA_id:63759 AF521582.1 isolate str. IR prokMSA_id:65375 AF432145.1 Selenate-reducing isolate str. AK4OH1 2.43.5.12.1.1.8250 OTU 1 seq prokMSA_id:24860 AJ007658.1 1605-59 clone 1605-59 2.43.5.12.1.1.8284 OTU 2 seqs prokMSA_id:8051 AF177296.1 Methylosarcina fibrata AML-C10 prokMSA_id:8052 AF177297.1 Methylosarcina quisquiliarum AML-D4 2.43.5.12.1.1.8299 OTU 1 seq prokMSA_id:40198 AJ299983.1 2.43.5.12.1.1.8358 OTU 1 seq prokMSA_id:22752 AB056868.3 Bathymodiolus sp. symbiont I 2.43.5.12.1.1.8359 OTU 1 seq prokMSA_id:8035 X73819.1 Methylococcus thermophilus subsp. ACM 3585 IMV-B-3037 2.43.5.12.1.1.8402 OTU 2 seqs prokMSA_id:8086 X72772.1 "Methylomonas lutea" prokMSA_id:8091 X72773.1 Methylobacter whittenburyi 2.43.5.12.1.1.8418 OTU 1 seq prokMSA_id:40285 AY063505.1 2.43.5.12.1.1.8420 OTU 1 seq prokMSA_id:47633 AF296223.1 2.43.5.12.1.1.8427 OTU 1 seq prokMSA_id:8045 U89300.1 Methylocaldum szegediense str. OR2 2.43.5.12.1.1.8435 OTU 1 seq prokMSA_id:50455 AB036711.1 Bathymodiolus japonicus methanotrophic gill symbiont methanotrophic 2.43.5.12.1.1.8645 OTU 18 seqs prokMSA_id:8057 AJ131369.1 Methylomonas scandinavica prokMSA_id:8060 AF096091.1 Methylobacter alcaliphilus str. 5z prokMSA_id:8063 D89279.1 Methylomicrobium sp. str. NI prokMSA_id:8066 AF150806.1 Methylomonas methanica prokMSA_id:8067 AF150800.1 Methylomonas sp. str. LW21 prokMSA_id:8068 AF150798.1 Methylomonas sp. str. LW19 prokMSA_id:8069 AF150796.1 Methylomonas sp. str. LW16 prokMSA_id:8070 AF150794.1 Methylomonas sp. str. LW15 prokMSA_id:8071 AF150792.1 Methylomonas sp. str. LW13 prokMSA_id:8078 AB015603.1 Methylomonas sp. str. KSPIII prokMSA_id:8081 X72767.1 Methylomicrobium agile prokMSA_id:25325 AF194539.1 Methylomicrobium sp. str. 4G prokMSA_id:39461 AF307138.1 Methylomicrobium buryatense str. 5B prokMSA_id:45263 AF304196.1 Methylomonas methanica str. S1; NCIMB 11130 prokMSA_id:70707 AJ132384.1 Kenya clone AMO 1 prokMSA_id:81028 AF453550.1 clone ML513M-26 prokMSA_id:100530 AY546505.1 soda lake sediment clone 5H_100 prokMSA_id:104970 AY546511.1 soda lake sediment clone 5H_78 2.43.5.12.1.1.8667 OTU 1 seq prokMSA_id:8036 X72771.1 Methylococcus capsulatus 2.43.5.12.1.1.8729 OTU 1 seq prokMSA_id:48494 AF351235.1 coal tar waste-contaminated groundwater clone 8-4 proteobacterium 2.43.5.12.1.1.8810 OTU 1 seq prokMSA_id:54364 AJ299981.1 2.43.5.12.1.1.8821 OTU 9 seqs prokMSA_id:8097 AF131868.2 Methylobacter sp. str. T20 prokMSA_id:8098 AF152597.1 Methylobacter psychrophilus str. Z-0021 prokMSA_id:31630 AF358020.1 peat soil microcosm clone LO13.6 prokMSA_id:40043 AF304195.1 Methylobacter luteus str. NCIMB 11914 prokMSA_id:41292 AF351239.2 coal tar waste-contaminated groundwater clone 8-65 proteobacterium prokMSA_id:42401 AJ290055.1 Germany: Lake Fuchskuhle north basin clone FukuN13 FukuN13 prokMSA_id:43109 AJ414655.1 Methylobacter sp. str. SV96 prokMSA_id:100062 AY546502.1 soda lake sediment clone 1H_45 prokMSA_id:100375 AY546504.1 soda lake sediment clone 1H_73 2.43.5.12.1.1.8840 OTU 2 seqs prokMSA_id:22040 AY007295.1 Methylobacter sp. str. LW12 prokMSA_id:40125 AY007296.1 Methylobacter sp. str. LW14 2.43.5.12.1.1.8877 OTU 1 seq prokMSA_id:16413 AB036710.1 Bathymodiolus platifrons methanotrophic gill symbiont methanotrophic 2.43.5.12.1.1.8881 OTU 1 seq prokMSA_id:32280 U62131.1 Solemya terraeregina gill symbiont 2.43.5.12.1.1.8893 OTU 2 seqs prokMSA_id:29983 AF177314.1 type I methanotroph extracted landfill soil clone T1-14 prokMSA_id:51129 AF177313.1 type I methanotroph extracted landfill soil clone T1-13 2.43.5.12.1.1.8915 OTU 1 seq prokMSA_id:8050 X72777.1 Methylomicrobium album 2.43.5.12.1.1.8919 OTU 2 seqs prokMSA_id:8084 X72776.1 Methylomonas aurantiaca prokMSA_id:8090 X72778.1 Methylomonas fodinarum 2.43.5.12.1.1.8929 OTU 1 seq prokMSA_id:8059 X72775.1 Methylomicrobium pelagicum 2.43.5.12.1.1.8940 OTU 1 seq prokMSA_id:41887 AF177312.1 type I methanotroph extracted landfill soil clone T1-09 2.43.5.12.1.1.8963 OTU 3 seqs prokMSA_id:16464 AF469289.1 clone 33-PA121B98 prokMSA_id:26347 AF469290.1 clone 33-PA129B98 prokMSA_id:51649 AF469324.1 clone CTD47B 2.43.5.12.1.1.9017 OTU 1 seq prokMSA_id:20538 AF177311.1 type I methanotroph extracted landfill soil clone T1-08 2.43.5.12.1.1.9065 OTU 1 seq prokMSA_id:56096 AY094499.1 extracted chamber connected to Ocean Drilling Program site 892b clone 1-27 proteobacterium 2.43.5.12.1.1.9070 OTU 1 seq prokMSA_id:52100 AJ299970.1 2.43.5.12.1.1.9188 OTU 1 seq prokMSA_id:8076 AJ231066.1 20 clone 2.43.5.12.1.1.9304 OTU 1 seq prokMSA_id:47576 AF296226.1 2.43.5.12.1.1.9311 OTU 1 seq prokMSA_id:33214 AF177309.1 type I methanotroph extracted landfill soil clone T1-05 2.43.5.12.1.1.9313 OTU 1 seq prokMSA_id:8092 AF150775.1 Lake Washington sediment clone pAMC419 2.43.5.12.1.1.9318 OTU 1 seq prokMSA_id:8099 U29164.1 unidentified mussel methanotrophic gill symbiont 2.43.5.12.1.1.9322 OTU 1 seq prokMSA_id:8037 X72770.1 Methylococcus capsulatus 2.43.5.12.1.1.9415 OTU 1 seq prokMSA_id:50819 AJ299978.1 2.43.5.12.1.1.9438 OTU 1 seq prokMSA_id:77724 AJ535221.1 marine sediment above hydrate ridge clone Hyd24-01 proteobacterium 2.43.5.12.1.1.9503 OTU 5 seqs prokMSA_id:8082 AF150783.1 Lake Washington sediment clone pAMC466 prokMSA_id:8083 AF150776.1 Lake Washington sediment clone pAMC421 prokMSA_id:31246 AF182499.1 estuarine sediment clone R4 prokMSA_id:49658 AF182497.1 estuarine sediment clone R2 prokMSA_id:67240 AF495887.1 Methylobacter sp. HG-1 2.43.5.12.1.1.9547 OTU 1 seq prokMSA_id:45451 AJ299977.1 2.43.5.12.2 Unclassified 8 seqs 2.43.5.12.2.1 sf_1 8 seqs 2.43.5.12.2.1.9182 OTU 8 seqs prokMSA_id:8087 AF150784.1 Methylobacter sp. str. LW1 prokMSA_id:8096 AF016981.1 Methylobacter sp. BB5.1 prokMSA_id:37065 AF304197.1 Methylobacter marinus str. A45 prokMSA_id:40524 AY063507.1 prokMSA_id:54307 AY063510.1 prokMSA_id:104826 AY546498.1 soda lake sediment clone 1H_2 prokMSA_id:112808 AY921679.1 farm soil adjacent to silage storage bunker clone AKYG998 prokMSA_id:113696 AY921680.1 farm soil adjacent to silage storage bunker clone AKYH1239 2.43.5.13 Oceanospirillales 352 seqs 2.43.5.13.1 Alcanivoraceae 55 seqs 2.43.5.13.1.1 sf_1 55 seqs 2.43.5.13.1.1.8170 OTU 1 seq prokMSA_id:8811 AB021383.1 Pseudomonas halophila str. DSM 3050T 2.43.5.13.1.1.8237 OTU 1 seq prokMSA_id:53763 AF348710.1 clone MPD-13 2.43.5.13.1.1.8335 OTU 1 seq prokMSA_id:28452 AB055205.1 Alcanivorax sp. str. K3-3 (MBIC 4323) 2.43.5.13.1.1.8367 OTU 1 seq prokMSA_id:23790 AF235122.1 North Sea; NOR3 isolate str. KT0221 2.43.5.13.1.1.8434 OTU 26 seqs prokMSA_id:8229 Y12579.1 Alcanivorax borkumensis prokMSA_id:8230 AF062642.1 Alcanivorax borkumensis prokMSA_id:8231 AB005655.1 petroleum-degrading clone ST1 prokMSA_id:8232 AJ001150.1 Alcanivorax jadensis str. T9 prokMSA_id:17943 AF354609.1 marine clone Arctic95B-15 prokMSA_id:19155 AF432314.1 template extracted sediment oil-contaminated beach microcosms; day 26 experiment clone 0%N-26d-6 prokMSA_id:20619 AF143836.1 hydrocarbon-degrading consortium clone 4-Org2-35 prokMSA_id:33663 AB055206.1 Alcanivorax sp. str. ST-T1 (MBIC 4326) prokMSA_id:35297 AJ302701.1 Alcanivorax borkumensis ME103 prokMSA_id:36780 AF432315.1 template extracted sediment oil-contaminated beach microcosms; day 26 experiment clone 0%N-26d-48 prokMSA_id:40587 AB055204.1 Alcanivorax sp. str. K2-1 (MBIC 4322) prokMSA_id:40847 AF354610.1 marine clone Arctic96A-12 prokMSA_id:41172 AB053123.1 Alcanivorax sp. str. Cro1 prokMSA_id:45125 AB058675.1 Alcanivorax sp. str. Shm-2 prokMSA_id:48177 AB053124.1 Alcanivorax sp. str. Mho1 prokMSA_id:49307 AB055208.1 Alcanivorax sp. str. Wf-1 (MBIC 4348) prokMSA_id:49326 AB053122.1 Alcanivorax sp. Nag1 str. nag1 prokMSA_id:77297 AF548762.1 sediment; oil-contaminated beach treated with s releaser fertilizer field bioremediation experiment; day 11 experiment clone SR11d6 prokMSA_id:77561 AF548763.1 sediment; oil-contaminated 1% nitrogen ammended beach microcosms; day 6 experiment clone 1%N-6d-3 prokMSA_id:79284 AF382125.1 bacterioplankton clone ZA3711c prokMSA_id:82525 AJ557866.1 seawater prokMSA_id:97143 AY394875.1 Alcanivorax sp. str. EPR 17 prokMSA_id:97214 AY394880.1 Alcanivorax sp. str. EPR 27 W prokMSA_id:97257 AY394876.1 Alcanivorax sp. str. EPR 19 prokMSA_id:97776 AY394877.1 Alcanivorax sp. str. EPR 20 prokMSA_id:112858 AY922230.1 orange microbial mat on grey whale carcass Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131741 2.43.5.13.1.1.8772 OTU 9 seqs prokMSA_id:24418 AB055207.1 Alcanivorax sp. str. TE-9 (MBIC 4330) prokMSA_id:72421 AB053132.1 Alcanivorax sp. str. PR-1 prokMSA_id:80125 AY189748.1 Alcanivorax sp. str. B-5 prokMSA_id:88713 AJ567578.1 deep-sea sediment clone MBAE17 prokMSA_id:96374 AY394868.1 Alcanivorax sp. str. EPR 10 prokMSA_id:97379 AY394865.1 Alcanivorax sp. str. EPR 6 prokMSA_id:98674 AY394866.2 Alcanivorax sp. str. EPR 7 prokMSA_id:103147 AY683531.1 Alcanivorax dieselolei str. NO1A prokMSA_id:104011 AY683537.1 Alcanivorax dieselolei str. B-5 2.43.5.13.1.1.8844 OTU 8 seqs prokMSA_id:8233 AB022706.1 Obligately oligotrophic isolate str. POO-15 bacteria prokMSA_id:19510 U78931.1 d marine isolate clone R2A173 prokMSA_id:23132 AB022205.1 Marine obligately oligotrophic isolate str. POO-7 prokMSA_id:24863 AB022201.1 Marine obligately oligotrophic isolate str. POO-3 prokMSA_id:64885 AF328761.1 Alcanivorax venustensis str. ISO1 prokMSA_id:68293 AF361673.1 Eastern Mediterranean Amsterdam mud volcano 2034 m water depth; deep sea carbonate crust clone MN13BT4-47 prokMSA_id:68301 AF361668.1 Eastern Mediterranean Kazan mud volcano 1706 m water depth; deep sea carbonate crust clone MN12BT3-35 prokMSA_id:74819 AB022208.1 Marine obligately oligotrophic isolate str. POO-13 2.43.5.13.1.1.8927 OTU 1 seq prokMSA_id:51048 AF348709.1 clone MPD-12 2.43.5.13.1.1.9043 OTU 4 seqs prokMSA_id:8234 U70696.1 Cape Hatteras picoplankton clone OM60 prokMSA_id:62464 AY102017.1 collected June 17 1999 isolate str. HTCC160 prokMSA_id:96552 AY386336.1 marine str. HTCC2223 prokMSA_id:102961 AY627377.1 marine clone AY627377 2.43.5.13.1.1.9075 OTU 1 seq prokMSA_id:49300 AB022203.1 Marine obligately oligotrophic isolate str. POO-9 2.43.5.13.1.1.9602 OTU 1 seq prokMSA_id:17600 AB022200.1 Marine obligately oligotrophic isolate str. POO-10 2.43.5.13.1.1.9658 OTU 1 seq prokMSA_id:16850 AB053127.1 Alcanivorax sp. str. Haw1 2.43.5.13.2 Hahellaceae 3 seqs 2.43.5.13.2.1 sf_1 3 seqs 2.43.5.13.2.1.8856 OTU 3 seqs prokMSA_id:31704 AJ315452.1 seawater clone prokMSA_id:62941 AY130994.1 Zooshikella ganghwensis str. JC2044 prokMSA_id:70229 AY130995.1 Zooshikella ganghwensis str. JC2045 2.43.5.13.3 Halomonadaceae 231 seqs 2.43.5.13.3.1 sf_1 231 seqs 2.43.5.13.3.1.8233 OTU 1 seq prokMSA_id:8115 Y13299.1 Carnimonas nigrifaciens str. CTCBS1 2.43.5.13.3.1.8242 OTU 1 seq prokMSA_id:38116 AJ306892.1 Halomonas subglaciescola str. DSM 4683 2.43.5.13.3.1.8262 OTU 1 seq prokMSA_id:36784 AY035894.1 Halomonas cupida str. An1 2.43.5.13.3.1.8309 OTU 15 seqs prokMSA_id:8121 Z11925.1 symbiont of Bemisia tabaci (sweetpotato whitefly) prokMSA_id:19222 AF400462.1 Primary endosymbiont Bemisia tabaci clone MEX4 aleyrodidarum prokMSA_id:20005 AF400461.1 Primary endosymbiont Bemisia tabaci clone MEX12 aleyrodidarum prokMSA_id:28101 AF400451.1 Primary endosymbiont Bemisia tabaci clone AZA aleyrodidarum prokMSA_id:29094 AF400463.1 Primary endosymbiont Bemisia tabaci clone TANZ15 prokMSA_id:34503 AF400450.1 Primary endosymbiont Bemisia tabaci clone AUS aleyrodidarum prokMSA_id:36328 AF400466.1 Primary endosymbiont Bemisia tabaci clone UG23 aleyrodidarum prokMSA_id:39721 AF400468.1 Primary endosymbiont Bemisia tabaci clone UG39 prokMSA_id:42418 AF400454.1 Primary endosymbiont Bemisia tabaci clone CAMW15 aleyrodidarum prokMSA_id:43103 AF400464.1 Primary endosymbiont Bemisia tabaci clone TANZ18 aleyrodidarum prokMSA_id:43537 AF400465.1 Primary endosymbiont Bemisia tabaci clone TANZ3 aleyrodidarum prokMSA_id:49640 AF400457.1 Primary endosymbiont Bemisia tabaci clone IND34 aleyrodidarum prokMSA_id:73878 AF211870.1 Bemisia argentifolii symbiont prokMSA_id:88180 AY268081.1 Bemisia tabaci symbiont prokMSA_id:107554 AY266104.1 Bemisia tabaci symbiont 2.43.5.13.3.1.8317 OTU 5 seqs prokMSA_id:8126 AB021386.1 Pseudomonas beijerinckii str. ATCC 19372T prokMSA_id:43878 AF211861.1 Chromohalobacter canadensis str. DSM6769 prokMSA_id:46277 AJ295143.1 Chromohalobacter canadensis str. ATCC 43984 T prokMSA_id:100130 AB105069.1 Chromohalobacter sp. str. 160 prokMSA_id:109870 AB105160.1 Chromohalobacter sp. str. 560 2.43.5.13.3.1.8331 OTU 1 seq prokMSA_id:46892 AF400467.1 Primary endosymbiont Bemisia tabaci clone UG26 aleyrodidarum 2.43.5.13.3.1.8334 OTU 1 seq prokMSA_id:8133 AF054286.1 Halomonas campisalis str. ATCC 700597 4A 2.43.5.13.3.1.8429 OTU 26 seqs prokMSA_id:8149 AF199439.1 Halomonas aquamarina str. DS40M3 prokMSA_id:8150 AB022662.1 Halomonas sp. str. MBIC1142 UN3-4 prokMSA_id:8151 AB010845.1 strain HTB143 clone HTB143 prokMSA_id:8152 AB010846.1 strain HTB069 clone HTB069 prokMSA_id:8153 AB010866.1 strain HTB123 clone HTB123 prokMSA_id:8154 AB010870.1 strain HTB111 clone HTB111 prokMSA_id:8156 AB010847.1 strain HTB138 clone HTB138 prokMSA_id:8157 AB010867.1 strain HTB122 clone HTB122 prokMSA_id:18077 AF212206.2 Halomonas axialensis str. Althf1; ATCC BAA-802; CECT 5812; DSM 15723; CCM7103 prokMSA_id:19859 AJ306888.1 Halomonas aquamarina str. DSM 30161 prokMSA_id:25345 AF212201.2 Halomonas meridiana str. Eplume2; ATCC BAA-804; CECT 5816; DSM 15721; CCM 7106 prokMSA_id:30624 AJ306891.1 Halomonas meridiana str. DSM 5425 prokMSA_id:33775 AF254112.1 thiosulfate-oxidizing (Deleya/Halomonas) north atlantic continental slope sediments at 1500 m depth isolate str. DII1a DII1a prokMSA_id:35815 AF212212.2 Halomonas sp. str. Ssw1.1818c prokMSA_id:42510 AF212217.2 Halomonas meridiana str. Slthf1; ATCC BAA-801; CECT 5813; DSM 15724; CCM 7105 prokMSA_id:42563 AB016050.1 Halomonas sp. str. NIBH P1H13 prokMSA_id:42780 AB016053.1 Halomonas sp. str. NIBH P1H25 prokMSA_id:44149 AB016051.1 Halomonas sp. str. NIBH P1H14 prokMSA_id:54333 AB016052.1 Halomonas sp. str. NIBH P1H22 prokMSA_id:71069 AJ244730.1 Halomonas sp. str. V4.MS.05 = MM_2723 prokMSA_id:75016 AJ297766.1 Halomonas sp. HY-101 prokMSA_id:75806 AJ294343.1 Halomonas sp. HY-51m prokMSA_id:76518 AJ294345.1 Halomonas sp. HY-23k prokMSA_id:80894 AY189682.1 Halomonas sp. str. P_wp0221 prokMSA_id:84393 AJ557860.1 seawater prokMSA_id:84649 AJ557848.1 seawater 2.43.5.13.3.1.8466 OTU 1 seq prokMSA_id:73550 AF220308.1 temperature petroleum reservoir clone O11D12 2.43.5.13.3.1.8514 OTU 14 seqs prokMSA_id:8127 X87221.1 Chromohalobacter marismortui prokMSA_id:8128 X87222.1 Chromohalobacter marismortui prokMSA_id:8129 U78719.1 Chromohalobacter marismortui str. T1093 prokMSA_id:8130 X87220.1 Chromohalobacter marismortui prokMSA_id:35612 AJ295147.1 Halomonas elongata str. ATCC 33174 prokMSA_id:37191 AJ295144.1 Chromohalobacter israelensis str. ATCC 43985 T prokMSA_id:43545 AF211862.1 Chromohalobacter israelensis str. DSM6768 prokMSA_id:48786 AJ295146.1 Chromohalobacter salexigens prokMSA_id:52988 AB042503.2 Halophilic isolate str. TAG C11 prokMSA_id:100920 AB167015.1 Chromohalobacter sp. str. NT N92 prokMSA_id:102251 AB166988.1 Chromohalobacter sp. str. NT N50 prokMSA_id:103171 AB166934.1 Chromohalobacter sp. str. MAN K24 prokMSA_id:105302 AY505516.1 Chromohalobacter marismortui str. GSP58 prokMSA_id:106217 AB166979.1 Chromohalobacter sp. str. NT N29 2.43.5.13.3.1.8562 OTU 1 seq prokMSA_id:61014 AB085649.1 Halomonas sp. str. TNB I20 2.43.5.13.3.1.8576 OTU 9 seqs prokMSA_id:61004 AB085660.1 Halomonas sp. str. SYM P12 prokMSA_id:61005 AB085659.1 Halomonas sp. str. NT N100 prokMSA_id:61006 AB085658.1 Halomonas sp. str. NT N97 prokMSA_id:61010 AB085654.1 Halomonas sp. str. SMT L4 prokMSA_id:76319 AF550586.1 Halomonas sp. Ko502 prokMSA_id:76753 AF550585.1 Halomonas sp. Ko501 prokMSA_id:84290 AF539763.1 Halomonas sp. str. E23 prokMSA_id:85461 AF539762.1 Halomonas sp. str. E21 prokMSA_id:86698 AF539764.1 Halomonas sp. str. R21 2.43.5.13.3.1.8598 OTU 68 seqs prokMSA_id:8131 X92417.1 Halomonas desiderata str. FB2 prokMSA_id:8147 AF139994.1 Halomonas sp. str. ML-028 prokMSA_id:8148 M93356.1 Halomonas meridiana prokMSA_id:17793 AB042501.2 Halomonas sp. str. TAG C4 prokMSA_id:22626 AJ293821.1 Arctic seawater isolate str. R7079 prokMSA_id:22659 AF280796.1 Halomonas sp. str. EF43 prokMSA_id:22745 AY062217.1 Halomonas sp. str. BYS-1 prokMSA_id:23983 AF212216.2 Halomonas sp. str. Splume4.1864c prokMSA_id:24039 AF212214.2 Halomonas sp. str. Sbplume1.1840c prokMSA_id:30146 AB016049.1 Halomonas sp. str. NIBH P1H8 prokMSA_id:31671 AJ293828.1 Arctic seawater isolate str. R7103 prokMSA_id:34303 X92145.1 Lake Bogoria isolate WB4 prokMSA_id:35481 X92149.1 Lake Nakuru isolate 19N1 prokMSA_id:36640 AF212218.2 Halomonas hydrothermalis str. Slthf2; ATCC BAA-800; CECT 5814; DSM 15725; CCM 7104 prokMSA_id:40862 AJ306894.1 Halomonas venusta str. DSM 4743 prokMSA_id:51148 X92150.1 Lake Magadi isolate 21M1 prokMSA_id:52762 AF371860.1 phylotype OTU-203 swine intestine clone p-860-a5 prokMSA_id:63144 AY121436.1 Halomonas sp. str. YIM-kkny11 prokMSA_id:70966 AB055787.1 Halomonas sp. str. Dsur-1 prokMSA_id:71016 AF173968.1 Halomonas variabilis str. KT1111 prokMSA_id:71534 AJ311970.1 central Baltic Sea water column clone OS-1488 proteobacterium prokMSA_id:75036 AJ294347.1 Halomonas variabilis HY-B3 prokMSA_id:75357 AJ294346.1 Halomonas sp. HY-B2 prokMSA_id:75482 AJ294344.1 Halomonas sp. HY-23g prokMSA_id:75638 AJ294338.1 Halomonas variabilis HY-51g prokMSA_id:81690 AY204638.1 Halomonas variabilis str. HTG7 prokMSA_id:81790 AJ431369.1 Halomonas glaciei str. DD 39 prokMSA_id:91936 AY332559.1 Halomonas sp. str. EF11 prokMSA_id:93527 AJ551130.1 Halomonas sp. es11 prokMSA_id:96155 AY383044.1 Halomonas sp. str. DY8-1 prokMSA_id:99012 AY687559.1 on-axis deep seawater 2350 m near Main Field Endeavour Segment Juan de Fuca Ridge clone E19 prokMSA_id:99111 AY687572.1 deep seawater 2540 m near Baby Bare outcrop clone D17 prokMSA_id:99189 AY687488.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H30 prokMSA_id:99200 AB166944.1 Halomonas sp. str. SMT L21 prokMSA_id:99335 AY687489.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H31 prokMSA_id:99800 AY687504.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H39 prokMSA_id:99990 AY687590.1 deep seawater 2540 m near Baby Bare outcrop clone D29 prokMSA_id:100275 AY687507.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H41 prokMSA_id:100518 AB104434.1 Halomonas sp. HB-N prokMSA_id:100532 AY687521.1 deep seawater 1295 m near Axial Seamount clone F10 prokMSA_id:100587 AY687509.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H43 prokMSA_id:100673 AB104435.1 Halomonas sp. HA-T prokMSA_id:100830 AJ640133.1 Halomonas sp. 18bAG prokMSA_id:101325 AY687526.1 deep seawater 1295 m near Axial Seamount clone F2 prokMSA_id:101455 AB166983.1 Halomonas sp. str. NT N40 prokMSA_id:101599 AY687540.1 on-axis deep seawater 2350 m near Main Field Endeavour Segment Juan de Fuca Ridge clone E23 prokMSA_id:101623 AB183511.1 Halomonas sp. str. T5301 prokMSA_id:101663 AY687528.1 deep seawater 1295 m near Axial Seamount clone F4 prokMSA_id:101719 AJ515365.2 Halomonas cf. campisalis 'campaniae' prokMSA_id:102180 AY730263.1 Halomonas sp. M3-10C prokMSA_id:102493 AY669165.1 Halomonas venusta OC-4 prokMSA_id:102797 AY687560.1 on-axis deep seawater 2350 m near Main Field Endeavour Segment Juan de Fuca Ridge clone E20 prokMSA_id:103002 AY687477.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H19 prokMSA_id:103817 AY687495.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H55 prokMSA_id:103898 AY687580.1 deep seawater 2540 m near Baby Bare outcrop clone D7 prokMSA_id:104118 AY687497.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H58 prokMSA_id:104431 AY687499.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H3 prokMSA_id:105276 AY687589.1 deep seawater 2540 m near Baby Bare outcrop clone D28 prokMSA_id:106199 AY687535.1 deep seawater 1295 m near Axial Seamount clone F22 prokMSA_id:106455 AY730256.1 Halomonas sp. M3-10A prokMSA_id:106621 AY687550.1 on-axis deep seawater 2350 m near Main Field Endeavour Segment Juan de Fuca Ridge clone E36 prokMSA_id:106771 AY687623.1 marker 33 diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone g23 prokMSA_id:106833 AY687539.1 on-axis deep seawater 2350 m near Main Field Endeavour Segment Juan de Fuca Ridge clone E22 prokMSA_id:107092 AY687481.1 easy diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone H24 prokMSA_id:107229 AY687626.1 marker 33 diffuse f hydrothermal vent 1520 m Axial Seamount Juan de Fuca Ridge clone g26 prokMSA_id:107547 AB167060.1 Halomonas sp. str. SB J85 prokMSA_id:110100 AY849802.1 Halomonas sp. 1230sf2 prokMSA_id:111155 AY856383.1 Halomonas sp. MN12-2a 2.43.5.13.3.1.8728 OTU 2 seqs prokMSA_id:8162 M59153.1 Halomonas halmophila prokMSA_id:26353 AJ306889.1 Halomonas halmophila str. ATCC 19717 2.43.5.13.3.1.8854 OTU 14 seqs prokMSA_id:8143 U85871.1 Halomonas variabilis str. SW04 prokMSA_id:8144 U85872.1 Halomonas variabilis str. SW32 prokMSA_id:8145 U85873.1 Halomonas variabilis str. SW48 prokMSA_id:33823 AJ306893.1 Halomonas variabilis str. DSM 3051 prokMSA_id:35278 AF212203.2 Halomonas sp. str. Eplume3.D3 prokMSA_id:40996 AF212202.2 Halomonas neptunia str. Eplume1; ATCC BAA-805; CECT 5815; DSM 15720; CCM 7107 prokMSA_id:61007 AB085657.1 Halomonas sp. str. ARD M36 prokMSA_id:61008 AB085656.1 Halomonas sp. str. ARD M34 prokMSA_id:61013 AB085650.2 Halomonas sp. str. TNB I24 prokMSA_id:75905 AJ294348.1 Halomonas variabilis HY-61 prokMSA_id:81833 AY245450.1 Halomonas boliviensis str. LC2 prokMSA_id:82157 AY167282.1 Halomonas variabilis str. ANT9112 prokMSA_id:82388 AY245449.1 Halomonas boliviensis str. LC1 prokMSA_id:82406 AY167278.1 Halomonas sp. str. ANT9086 2.43.5.13.3.1.8903 OTU 7 seqs prokMSA_id:8165 AJ243447.1 Halomonas salina str. ATCC 49509 prokMSA_id:8166 AJ243448.1 Halomonas salina str. DSM 5928 prokMSA_id:25638 AJ295145.1 Halomonas salina str. F8-11 T prokMSA_id:52868 AF301407.1 Halomonas salina str. AS11 prokMSA_id:99040 AB167063.1 Halomonas sp. str. SB J93 prokMSA_id:106924 AB189311.1 Halomonas sp. str. IA1-Hm1 prokMSA_id:107695 AB167061.1 Halomonas sp. str. SB J86 2.43.5.13.3.1.8939 OTU 1 seq prokMSA_id:8146 AF170753.1 Halomonas sp. str. QSSC9-11 2.43.5.13.3.1.8981 OTU 1 seq prokMSA_id:24119 AF139993.1 Halomonas sp. str. ML-027 2.43.5.13.3.1.8989 OTU 1 seq prokMSA_id:44057 AB049745.1 Halomonas sp. Loihi-Chm()-5 2.43.5.13.3.1.8994 OTU 1 seq prokMSA_id:25150 AF400482.1 Trialeurodes abutilonea symbiont 2.43.5.13.3.1.9025 OTU 1 seq prokMSA_id:34220 AB024933.1 Halomonas sp. UT103 2.43.5.13.3.1.9071 OTU 1 seq prokMSA_id:8170 L04942.1 Halomonas halodenitrificans 2.43.5.13.3.1.9141 OTU 1 seq prokMSA_id:67708 AB069958.1 Halomonas sp. SK1 2.43.5.13.3.1.9201 OTU 1 seq prokMSA_id:8171 X87217.1 Halomonas salina 2.43.5.13.3.1.9255 OTU 20 seqs prokMSA_id:22868 AJ306890.1 Cobetia marina str. DSM 4741 prokMSA_id:31691 AF316143.1 Halomonas sp. 3550 str. KMM 3550; F6 prokMSA_id:34862 AF212205.2 Halomonas sp. str. Msw1.1556b prokMSA_id:92002 AY349462.1 Halomonas sp. WHOI JT-29 prokMSA_id:93482 AJ551113.1 Halomonas sp. wp38 prokMSA_id:93560 AJ551114.1 Halomonas sp. wp39 prokMSA_id:93721 AJ551115.1 Halomonas sp. mp1 prokMSA_id:93868 AJ551120.1 Halomonas sp. mp6 prokMSA_id:93962 AJ551108.1 Halomonas sp. wp31 prokMSA_id:94081 AJ551106.1 Halomonas sp. wp29 prokMSA_id:94104 AJ551111.1 Halomonas sp. wp34 prokMSA_id:98888 AB167062.1 Cobetia sp. str. SB J92 prokMSA_id:99973 AB167069.1 Cobetia sp. str. ARD M11 prokMSA_id:101319 AJ560628.1 Halomonas sp. wp36 prokMSA_id:101769 AY628693.1 Cobetia marina str. KMM 296 prokMSA_id:101926 AY628694.1 Cobetia marina str. KMM 734 prokMSA_id:108609 AY745829.1 Halomonas sp. str. JL-59 prokMSA_id:108614 AY745833.1 Halomonas sp. str. JL-63 prokMSA_id:108617 AY745837.1 Halomonas sp. str. JL-S8 prokMSA_id:108660 AY745870.1 Halomonas sp. str. JL-81 2.43.5.13.3.1.9323 OTU 9 seqs prokMSA_id:8160 X87218.1 Halomonas eurihalina prokMSA_id:8167 L42616.1 Halomonas pacifica prokMSA_id:23570 X92141.1 Lake Bogoria isolate WB2 prokMSA_id:25255 AJ133761.1 Halomonas sp. str. Col2 prokMSA_id:29327 X92139.1 Lake Bogoria isolate 25B1 prokMSA_id:42664 X92136.1 Lake Bogoria isolate WB5 prokMSA_id:63473 AY121978.1 Halomonas elongata str. RA83 prokMSA_id:82347 AY205298.1 Halomonas sp. str. CR1-4 prokMSA_id:84065 AY268080.1 Halomonas ventosae str. Al12 2.43.5.13.3.1.9328 OTU 1 seq prokMSA_id:46225 X92138.1 Lake Bogoria isolate 8B1 2.43.5.13.3.1.9382 OTU 1 seq prokMSA_id:79723 AB094888.1 subseafloor sediments Sea Okhotsk clone OHKB7.22 2.43.5.13.3.1.9421 OTU 1 seq prokMSA_id:45184 AF417910.1 antarctic soil clone bh4.45 2.43.5.13.3.1.9446 OTU 2 seqs prokMSA_id:26569 AJ302088.1 Halomonas sp. str. IB-I6 prokMSA_id:46054 E15669.1 Deleya sp. ASE1315 2.43.5.13.3.1.9463 OTU 1 seq prokMSA_id:51913 AF286123.1 symbiont 2.43.5.13.3.1.9471 OTU 1 seq prokMSA_id:79151 AF505744.1 Boston Harbor surface water isolate str. UMB18C UMB18C 2.43.5.13.3.1.9526 OTU 2 seqs prokMSA_id:38608 AF251143.1 Halomonas marisflavi str. SW32 prokMSA_id:60375 AF513464.1 Halomonadaceae isolate str. PH17 2.43.5.13.3.1.9530 OTU 12 seqs prokMSA_id:8132 AB025599.1 Halomonas sp. str. MBIC2031 prokMSA_id:8135 U78786.1 Haererehalobacter ostenderis prokMSA_id:69979 AB055789.1 Pseudomonas sp. str. Fsur-1 prokMSA_id:82029 AY196981.1 Halomonas sp. 3012dK prokMSA_id:82752 AY226226.1 brine water L'Atalante Mediterranean Sea clone ABBB-82 prokMSA_id:98887 AB166942.1 Halomonas sp. str. SMT L16 prokMSA_id:99198 AB167064.1 Halomonas sp. str. ARD M1 prokMSA_id:103138 AB189309.1 Halomonas sp. str. IS-Hm1 prokMSA_id:103311 AB166935.1 Halomonas sp. str. MAN K27 prokMSA_id:103739 AB166938.1 Halomonas sp. str. MAN K46 prokMSA_id:106283 AB167027.1 Halomonas sp. str. NT N110 prokMSA_id:107694 AB166941.1 Halomonas sp. str. SMT L15 2.43.5.13.3.1.9534 OTU 3 seqs prokMSA_id:61011 AB085653.2 Halomonas sp. str. SYO J42 prokMSA_id:61012 AB085651.2 Halomonas sp. str. TNB I26 prokMSA_id:106120 AB166906.1 Halomonas sp. str. SYO J52 2.43.5.13.3.1.9592 OTU 1 seq prokMSA_id:28015 AF211860.1 Halomonas alimentaria str. YKJ-16 2.43.5.13.3.1.9629 OTU 1 seq prokMSA_id:33427 X92142.1 Lake Bogoria isolate 65B4 2.43.5.13.3.1.9645 OTU 1 seq prokMSA_id:43696 X92137.1 Lake Magadi isolate 27M1 2.43.5.13.4 Oceanospirillaceae 41 seqs 2.43.5.13.4.1 sf_1 41 seqs 2.43.5.13.4.1.8194 OTU 1 seq prokMSA_id:8109 AB006766.1 Pseudospirillum japonicum str. ATCC19191 2.43.5.13.4.1.8202 OTU 1 seq prokMSA_id:59151 AY136116.1 Oceanospirillum sp. str. MED92 2.43.5.13.4.1.8322 OTU 1 seq prokMSA_id:8192 AB021367.1 Marinobacterium stanieri str. ATCC 27130T 2.43.5.13.4.1.8329 OTU 1 seq prokMSA_id:8210 AJ238597.1 Marinomonas protea 2.43.5.13.4.1.8345 OTU 1 seq prokMSA_id:8195 AF140000.1 Oceanospirillum sp. str. ML-158 2.43.5.13.4.1.8496 OTU 1 seq prokMSA_id:53230 AF195481.1 Marinomonas sp. str. kbs31 2.43.5.13.4.1.8596 OTU 6 seqs prokMSA_id:22558 AF353238.1 marine clone Arctic95B-7 prokMSA_id:26646 AF353237.1 marine clone Arctic95B-13 prokMSA_id:79764 AF468308.1 Arctic sea ice; northern Fram Strait clone ARKICE-72 prokMSA_id:80311 AF468253.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-13 prokMSA_id:80534 AF468291.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-75 prokMSA_id:81989 AY165586.1 pack ice northern Fram Strait Arctic Ocean clone ARKXVI/2-134 sea 2.43.5.13.4.1.8653 OTU 1 seq prokMSA_id:79342 AF382127.1 bacterioplankton clone ZA3706c 2.43.5.13.4.1.8673 OTU 4 seqs prokMSA_id:43675 AF277515.1 polar sea ice clone SIC.9029 prokMSA_id:79245 AF505734.1 Boston Harbor surface water isolate str. UMB8C prokMSA_id:79509 AF505730.1 Boston Harbor surface water isolate str. UMB6E UMB6E prokMSA_id:101822 AY549004.1 marine bone clone Osedax_sym1 2.43.5.13.4.1.8722 OTU 1 seq prokMSA_id:8189 M22365.1 Oceanospirillum linum 2.43.5.13.4.1.8737 OTU 1 seq prokMSA_id:47332 AJ426421.1 Oleispira antarctica str. RB-9 2.43.5.13.4.1.8769 OTU 1 seq prokMSA_id:39985 AF353240.1 obtained depth 55m Arctic Ocean (SCICEX 95 cruise) clone Arctic95B-19 2.43.5.13.4.1.8776 OTU 1 seq prokMSA_id:29708 AF277471.1 polar sea ice clone SIC.163 2.43.5.13.4.1.8779 OTU 2 seqs prokMSA_id:8184 AB006761.1 Oceanospirillum beijerinckii subsp. pelagicum str. IFO13612 prokMSA_id:8186 AB006760.1 Oceanospirillum subsp. beijerinckii str. IFO15445 2.43.5.13.4.1.8797 OTU 3 seqs prokMSA_id:8178 AB006763.1 Oceanospirillum maris subsp. williamsae str. IFO15468 prokMSA_id:8180 AB006762.1 Oceanospirillum maris subsp. hiroshimense str. IFO13616 prokMSA_id:8183 AB006771.1 Oceanospirillum subsp. maris str. ATCC27509 2.43.5.13.4.1.8828 OTU 1 seq prokMSA_id:31898 AF195480.1 Marinomonas sp. str. kbs18 2.43.5.13.4.1.8950 OTU 1 seq prokMSA_id:70226 AY028196.1 diatom detritus isolate str. Tw-1 2.43.5.13.4.1.9092 OTU 1 seq prokMSA_id:8176 AB006764.1 Oceanospirillum multiglobuliferum str. IFO13614 2.43.5.13.4.1.9131 OTU 1 seq prokMSA_id:38461 AB077343.1 deep-sea sediment clone TYM--6 2.43.5.13.4.1.9169 OTU 1 seq prokMSA_id:8409 AF006607.1 Candidatus Endobugula sertula str. BnPV 2.43.5.13.4.1.9351 OTU 1 seq prokMSA_id:79392 AF382102.1 bacterioplankton clone ZA2333c 2.43.5.13.4.1.9495 OTU 1 seq prokMSA_id:81830 AY165575.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-16 sea 2.43.5.13.4.1.9515 OTU 1 seq prokMSA_id:50527 AF277469.1 polar sea ice clone SIC.129 2.43.5.13.4.1.9563 OTU 1 seq prokMSA_id:30213 AF321017.2 Marinomonas sp. GOBB3-320 2.43.5.13.4.1.9564 OTU 1 seq prokMSA_id:8206 AB006765.1 Marinobacterium jannaschii str. IFO15466 2.43.5.13.4.1.9614 OTU 1 seq prokMSA_id:8201 AB006767.1 Oceanobacter kriegii str. IFO15467 2.43.5.13.4.1.9622 OTU 2 seqs prokMSA_id:39120 AB054136.1 marine sponge clone HOC2 prokMSA_id:52455 AB054161.1 marine sponge clone HOC27 2.43.5.13.4.1.9650 OTU 1 seq prokMSA_id:8214 X67025.1 Oceanospirillum vagum 2.43.5.13.4.1.9653 OTU 1 seq prokMSA_id:8216 AF159676.1 related to Marinomonas group 2.43.5.13.5 Saccharospirillaceae 4 seqs 2.43.5.13.5.1 sf_1 4 seqs 2.43.5.13.5.1.8889 OTU 3 seqs prokMSA_id:55809 AF452607.1 hypersaline Mono Lake clone ML310M-42 prokMSA_id:63855 AF452603.1 hypersaline Mono Lake clone ML110J-5 prokMSA_id:79965 AF453543.1 clone ML812M-17 2.43.5.13.5.1.9191 OTU 1 seq prokMSA_id:31816 U84019.1 2.43.5.13.6 Unclassified 18 seqs 2.43.5.13.6.1 sf_3 18 seqs 2.43.5.13.6.1.8230 OTU 1 seq prokMSA_id:63932 AF424106.1 clone MERTZ_2CM_247 2.43.5.13.6.1.8289 OTU 1 seq prokMSA_id:71553 AJ318203.1 Waste-gas biofilter clone BIyi10 2.43.5.13.6.1.8327 OTU 1 seq prokMSA_id:80231 AF468398.1 Arctic sea ice ARK10148 2.43.5.13.6.1.8448 OTU 1 seq prokMSA_id:47061 AB041305.1 clone ECS35 2.43.5.13.6.1.8648 OTU 1 seq prokMSA_id:41357 AF422587.1 clone t012 2.43.5.13.6.1.8655 OTU 1 seq prokMSA_id:29312 AF434976.1 sponge symbiont JAWS20 clone 2.43.5.13.6.1.8670 OTU 1 seq prokMSA_id:35948 AF313496.1 sponge- resistant to level copper exposure clone NWCu007 2.43.5.13.6.1.8814 OTU 1 seq prokMSA_id:24515 AF195410.1 Hahella chejuensis 2.43.5.13.6.1.8944 OTU 1 seq prokMSA_id:24422 AF333528.1 clone R180 2.43.5.13.6.1.8961 OTU 1 seq prokMSA_id:7673 M99446.1 Calyptogena magnifica symbiont 2.43.5.13.6.1.8988 OTU 1 seq prokMSA_id:29864 AF333540.1 clone R187 2.43.5.13.6.1.9010 OTU 2 seqs prokMSA_id:79486 AF382119.1 bacterioplankton clone ZA3411c prokMSA_id:79531 AF382113.1 bacterioplankton clone ZA3313c 2.43.5.13.6.1.9089 OTU 2 seqs prokMSA_id:32995 AF348713.1 clone MPD-18 prokMSA_id:45195 AF348724.1 clone MPD-50 2.43.5.13.6.1.9538 OTU 1 seq prokMSA_id:7718 AF159684.1 related to Methylophaga group 2.43.5.13.6.1.9634 OTU 1 seq prokMSA_id:8213 AF159682.1 related to 2.43.5.13.6.1.9635 OTU 1 seq prokMSA_id:8803 U85866.1 Marinobacter sp. str. IC184 2.43.5.14 Pasteurellales 477 seqs 2.43.5.14.1 Pasteurellaceae 477 seqs 2.43.5.14.1.1 sf_1 477 seqs 2.43.5.14.1.1.8171 OTU 1 seq prokMSA_id:9545 M63900.1 Haemophilus ducreyi 2.43.5.14.1.1.8195 OTU 190 seqs prokMSA_id:9471 M35019.1 Haemophilus influenzae prokMSA_id:9476 X87977.1 Haemophilus influenzae str. CIP 5483 prokMSA_id:49616 NC_000907.1 Haemophilus influenzae Rd KW20 prokMSA_id:71828 AF076035.1 Haemophilus influenzae prokMSA_id:88850 AY325756.1 human cerebrospinal fluid clone prokMSA_id:100687 NZ_AADP01000001.1 Haemophilus influenzae str. R2866 prokMSA_id:109486 AY613478.1 Haemophilus influenzae str. M10666 prokMSA_id:109487 AY613689.1 Haemophilus influenzae str. M3675 prokMSA_id:109503 AY613619.1 Haemophilus influenzae str. M3669 prokMSA_id:109507 AY613588.1 Haemophilus influenzae str. M8706 prokMSA_id:109534 AY613727.1 Haemophilus influenzae str. M7952 prokMSA_id:109560 AY613668.1 Haemophilus influenzae str. M3876 prokMSA_id:109580 AY613714.1 Haemophilus influenzae str. M3913 prokMSA_id:109581 AY613638.1 Haemophilus influenzae str. M6962 prokMSA_id:109583 AY613675.1 Haemophilus influenzae str. M3865 prokMSA_id:109598 AY613629.1 Haemophilus influenzae str. M6599 prokMSA_id:109601 AY613599.1 Haemophilus influenzae str. M3908 prokMSA_id:109608 AY613616.1 Haemophilus influenzae str. M3672 prokMSA_id:109620 AY613699.1 Haemophilus influenzae str. M8670 prokMSA_id:109622 AY613701.1 Haemophilus influenzae str. M5216 prokMSA_id:109627 AY613718.1 Haemophilus influenzae str. M6589 prokMSA_id:109628 AY613679.1 Haemophilus influenzae str. M3861 prokMSA_id:109631 AY613593.1 Haemophilus influenzae str. M7878 prokMSA_id:109641 AY613483.1 Haemophilus influenzae str. M8811 prokMSA_id:109662 AY613661.1 Haemophilus influenzae str. M3896 prokMSA_id:109676 AY613653.1 Haemophilus influenzae str. M10913 prokMSA_id:109724 AY613711.1 Haemophilus influenzae str. M3886 prokMSA_id:109734 AY613471.1 Haemophilus influenzae str. M7763 prokMSA_id:109737 AY613642.1 Haemophilus influenzae str. M7755 prokMSA_id:109742 AY613734.1 Haemophilus influenzae str. M10071 prokMSA_id:109746 AY613692.1 Haemophilus influenzae str. M3678 prokMSA_id:109752 AY613587.1 Haemophilus influenzae str. M7634 prokMSA_id:109762 AY613610.1 Haemophilus influenzae str. M3858 prokMSA_id:109778 AY613472.1 Haemophilus influenzae str. M8402 prokMSA_id:109788 AY613674.1 Haemophilus influenzae str. M3866 prokMSA_id:109796 AY613687.1 Haemophilus influenzae str. M8636 prokMSA_id:109799 AY613447.1 Haemophilus influenzae str. M10473 prokMSA_id:109802 AY613624.1 Haemophilus influenzae str. M6616 prokMSA_id:109817 AY613738.1 Haemophilus influenzae str. M8524 prokMSA_id:109829 AY613696.1 Haemophilus influenzae str. M10794 prokMSA_id:109853 AY613673.1 Haemophilus influenzae str. M3867 prokMSA_id:109859 AY613590.1 Haemophilus influenzae str. ATCC9332; M11364 prokMSA_id:109869 AY613530.1 Haemophilus influenzae str. M10108 prokMSA_id:109883 AY613626.1 Haemophilus influenzae str. M6614 prokMSA_id:109888 AY613660.1 Haemophilus influenzae str. M10042 prokMSA_id:109916 AY613636.1 Haemophilus influenzae str. M9956 prokMSA_id:109917 AY613740.1 Haemophilus influenzae str. M8787 prokMSA_id:109925 AY613615.1 Haemophilus influenzae str. M3673 prokMSA_id:109930 AY613644.1 Haemophilus influenzae str. M8253 prokMSA_id:109935 AY613698.1 Haemophilus influenzae str. M8644 prokMSA_id:109943 AY613622.1 Haemophilus influenzae str. M6618 prokMSA_id:109951 AY613732.1 Haemophilus influenzae str. M10149 prokMSA_id:109965 AY613735.1 Haemophilus influenzae str. M9197 prokMSA_id:109995 AY613716.1 Haemophilus influenzae str. M9698 prokMSA_id:110010 AY613598.1 Haemophilus influenzae str. M3909 prokMSA_id:110017 AY613597.1 Haemophilus influenzae str. M3910 prokMSA_id:110022 AY613461.1 Haemophilus influenzae str. M9674 prokMSA_id:110037 AY613480.1 Haemophilus influenzae str. M7029 prokMSA_id:110038 AY613643.1 Haemophilus influenzae str. M8217 prokMSA_id:110050 AY613539.1 Haemophilus influenzae str. M9211 prokMSA_id:110051 AY613736.1 Haemophilus influenzae str. M7632 prokMSA_id:110057 AY613705.1 Haemophilus influenzae str. M6604 prokMSA_id:110064 AY613463.1 Haemophilus influenzae str. M7986 prokMSA_id:110068 AY613586.1 Haemophilus influenzae str. M10991 prokMSA_id:110069 AY613468.1 Haemophilus influenzae str. M10675 prokMSA_id:110077 AY613604.1 Haemophilus influenzae str. M3889 prokMSA_id:110096 AY613628.1 Haemophilus influenzae str. M6612 prokMSA_id:110109 AY613669.1 Haemophilus influenzae str. M3875 prokMSA_id:110111 AY613693.1 Haemophilus influenzae str. M3679 prokMSA_id:110112 AY613529.1 Haemophilus influenzae str. M9983 prokMSA_id:110124 AY613730.1 Haemophilus influenzae str. M4741 prokMSA_id:110142 AY613723.1 Haemophilus influenzae str. M7695 prokMSA_id:110145 AY613605.1 Haemophilus influenzae str. M3885 prokMSA_id:110150 AY613678.1 Haemophilus influenzae str. M3862 prokMSA_id:110158 AY613625.1 Haemophilus influenzae str. M6615 prokMSA_id:110188 AY613662.1 Haemophilus influenzae str. M3895 prokMSA_id:110194 AY613484.1 Haemophilus influenzae str. M8476 prokMSA_id:110201 AY613737.1 Haemophilus influenzae str. M10986 prokMSA_id:110218 AY613683.1 Haemophilus influenzae str. M3852 prokMSA_id:110235 AY613691.1 Haemophilus influenzae str. M3677 prokMSA_id:110247 AY613540.1 Haemophilus influenzae str. M10948 prokMSA_id:110280 AY613459.1 Haemophilus influenzae str. M10938 prokMSA_id:110288 AY613681.1 Haemophilus influenzae str. M3854 prokMSA_id:110297 AY613600.1 Haemophilus influenzae str. M3897 prokMSA_id:110315 AY613725.1 Haemophilus influenzae str. M10816 prokMSA_id:110322 AY613607.1 Haemophilus influenzae str. M3879 prokMSA_id:110333 AY613733.1 Haemophilus influenzae str. M10166 prokMSA_id:110340 AY613633.1 Haemophilus influenzae str. M6894 prokMSA_id:110348 AY613658.1 Haemophilus influenzae str. M10314 prokMSA_id:110373 AY613722.1 Haemophilus influenzae str. M7643 prokMSA_id:110381 AY613617.1 Haemophilus influenzae str. M3671 prokMSA_id:110390 AY613452.1 Haemophilus influenzae str. M8551 prokMSA_id:110408 AY613621.1 Haemophilus influenzae str. M6619 prokMSA_id:110420 AY613704.1 Haemophilus influenzae str. M6607 prokMSA_id:110422 AY613448.1 Haemophilus influenzae str. M10984 prokMSA_id:110425 AY613667.1 Haemophilus influenzae str. M3877 prokMSA_id:110437 AY613684.1 Haemophilus influenzae str. M3851 prokMSA_id:110442 AY613713.1 Haemophilus influenzae str. M3912 prokMSA_id:110449 AY613649.1 Haemophilus influenzae str. M8821 prokMSA_id:110466 AY613632.1 Haemophilus influenzae str. M6597 prokMSA_id:110473 AY613470.1 Haemophilus influenzae str. M10290 prokMSA_id:110480 AY613646.1 Haemophilus influenzae str. M8392 prokMSA_id:110486 AY613613.1 Haemophilus influenzae str. M3855 prokMSA_id:110493 AY613670.1 Haemophilus influenzae str. M3874 prokMSA_id:110498 AY613656.1 Haemophilus influenzae str. M10624 prokMSA_id:110499 AY613458.1 Haemophilus influenzae str. M10079 prokMSA_id:110504 AY613453.1 Haemophilus influenzae str. M7697 prokMSA_id:110513 AY613688.1 Haemophilus influenzae str. M3668 prokMSA_id:110539 AY613647.1 Haemophilus influenzae str. M8446 prokMSA_id:110543 AY613637.1 Haemophilus influenzae str. M9800 prokMSA_id:110559 AY613641.1 Haemophilus influenzae str. M7462 prokMSA_id:110583 AY613663.1 Haemophilus influenzae str. M3891 prokMSA_id:110598 AY613682.1 Haemophilus influenzae str. M3853 prokMSA_id:110618 AY613602.1 Haemophilus influenzae str. M3892 prokMSA_id:110632 AY613657.1 Haemophilus influenzae str. M10620 prokMSA_id:110658 AY613666.1 Haemophilus influenzae str. M3880 prokMSA_id:110670 AY613680.1 Haemophilus influenzae str. M3860 prokMSA_id:110708 AY613596.1 Haemophilus influenzae str. M3916 prokMSA_id:110712 AY613721.1 Haemophilus influenzae str. M11184 prokMSA_id:110726 AY613676.1 Haemophilus influenzae str. M3864 prokMSA_id:110728 AY613645.1 Haemophilus influenzae str. M8268 prokMSA_id:110738 AY613741.1 Haemophilus influenzae str. M7558 prokMSA_id:110741 AY613712.1 Haemophilus influenzae str. M3893 prokMSA_id:110753 AY613706.1 Haemophilus influenzae str. M6606 prokMSA_id:110767 AY613659.1 Haemophilus influenzae str. M10094 prokMSA_id:110768 AY613652.1 Haemophilus influenzae str. M9196 prokMSA_id:110779 AY613719.1 Haemophilus influenzae str. M6755 prokMSA_id:110781 AY613631.1 Haemophilus influenzae str. M6596 prokMSA_id:110802 AY613686.1 Haemophilus influenzae str. M8635 prokMSA_id:110810 AY613634.1 Haemophilus influenzae str. M6600 prokMSA_id:110819 AY613650.1 Haemophilus influenzae str. M8842 prokMSA_id:110823 AY613731.1 Haemophilus influenzae str. M8793 prokMSA_id:110827 AY613462.1 Haemophilus influenzae str. M8263 prokMSA_id:110851 AY613710.1 Haemophilus influenzae str. M3882 prokMSA_id:110886 AY613664.1 Haemophilus influenzae str. M3888 prokMSA_id:110888 AY613685.1 Haemophilus influenzae str. M3682 prokMSA_id:110889 AY613614.1 Haemophilus influenzae str. M3674 prokMSA_id:110893 AY613708.1 Haemophilus influenzae str. M6605 prokMSA_id:110898 AY613695.1 Haemophilus influenzae str. M3681 prokMSA_id:110908 AY613703.1 Haemophilus influenzae str. M6594 prokMSA_id:110916 AY613715.1 Haemophilus influenzae str. M3915 prokMSA_id:110919 AY613665.1 Haemophilus influenzae str. M3887 prokMSA_id:110927 AY613589.1 Haemophilus influenzae str. M6548 prokMSA_id:110928 AY613654.1 Haemophilus influenzae str. M10795 prokMSA_id:110935 AY613635.1 Haemophilus influenzae str. M9987 prokMSA_id:110947 AY613536.1 Haemophilus influenzae str. M7281 prokMSA_id:110955 AY613700.1 Haemophilus influenzae str. ATCC9795; M11368 prokMSA_id:110961 AY613726.1 Haemophilus influenzae str. M10810 prokMSA_id:110965 AY613464.1 Haemophilus influenzae str. M7983 prokMSA_id:110969 AY613655.1 Haemophilus influenzae str. M10670 prokMSA_id:110975 AY613603.1 Haemophilus influenzae str. M3890 prokMSA_id:110980 AY613724.1 Haemophilus influenzae str. M10981 prokMSA_id:111006 AY613460.1 Haemophilus influenzae str. M10259 prokMSA_id:111033 AY613702.1 Haemophilus influenzae str. M6587 prokMSA_id:111035 AY613601.1 Haemophilus influenzae str. M3894 prokMSA_id:111055 AY613720.1 Haemophilus influenzae str. M10286 prokMSA_id:111072 AY613677.1 Haemophilus influenzae str. M3863 prokMSA_id:111074 AY613651.1 Haemophilus influenzae str. M8906 prokMSA_id:111079 AY613456.1 Haemophilus influenzae str. M6859 prokMSA_id:111087 AY613739.1 Haemophilus influenzae str. M9919 prokMSA_id:111091 AY613535.1 Haemophilus influenzae str. M7516 prokMSA_id:111101 AY613707.1 Haemophilus influenzae str. M6603 prokMSA_id:111113 AY613630.1 Haemophilus influenzae str. M6598 prokMSA_id:111117 AY613611.1 Haemophilus influenzae str. M3857 prokMSA_id:111139 AY613620.1 Haemophilus influenzae str. M6624 prokMSA_id:111145 AY613694.1 Haemophilus influenzae str. M3680 prokMSA_id:111160 AY613640.1 Haemophilus influenzae str. M7455 prokMSA_id:111174 AY613608.1 Haemophilus influenzae str. M3878 prokMSA_id:111177 AY613672.1 Haemophilus influenzae str. M3869 prokMSA_id:111189 AY613618.1 Haemophilus influenzae str. M3670 prokMSA_id:111199 AY613627.1 Haemophilus influenzae str. M6613 prokMSA_id:111231 AY613648.1 Haemophilus influenzae str. M8554 prokMSA_id:111255 AY613729.1 Haemophilus influenzae str. M8881 prokMSA_id:111265 AY613594.1 Haemophilus influenzae str. M3918 prokMSA_id:111286 AY613606.1 Haemophilus influenzae str. M3883 prokMSA_id:111300 AY613623.1 Haemophilus influenzae str. M6617 prokMSA_id:111312 AY613697.1 Haemophilus influenzae str. M6759 prokMSA_id:111315 AY613671.1 Haemophilus influenzae str. M3870 prokMSA_id:111323 AY613531.1 Haemophilus influenzae str. M10117 prokMSA_id:111330 AY613477.1 Haemophilus influenzae str. M10228 prokMSA_id:111334 AY613473.1 Haemophilus influenzae str. M9187 prokMSA_id:111338 AY613612.1 Haemophilus influenzae str. M3856 prokMSA_id:111340 AY613639.1 Haemophilus influenzae str. M7073 prokMSA_id:111345 AY613481.1 Haemophilus influenzae str. M9336 prokMSA_id:111347 AY613485.1 Haemophilus influenzae str. M8443 prokMSA_id:111349 AY613595.1 Haemophilus influenzae str. M3917 prokMSA_id:111353 AY613609.1 Haemophilus influenzae str. M6868 prokMSA_id:111354 AY613690.1 Haemophilus influenzae str. M3676 prokMSA_id:111359 AY613709.1 Haemophilus influenzae str. M3881 prokMSA_id:111365 AY613717.1 Haemophilus influenzae str. M6588 2.43.5.14.1.1.8205 OTU 2 seqs prokMSA_id:9477 M75083.1 Pasteurella pneumotropica prokMSA_id:107812 AY362924.1 Pasteurella pneumotropica str. NCTC 8141 2.43.5.14.1.1.8228 OTU 6 seqs prokMSA_id:22523 AF268965.1 Actinobacillus indolicus str. H1422 prokMSA_id:42737 AF268961.1 Actinobacillus indolicus str. H1261 prokMSA_id:49124 AF268964.1 Actinobacillus indolicus str. H1419 prokMSA_id:70885 AF268960.1 Actinobacillus indolicus str. H1235 prokMSA_id:71115 AF268966.1 Actinobacillus indolicus str. H1106 prokMSA_id:72436 AF268963.1 Actinobacillus indolicus str. H1271 2.43.5.14.1.1.8278 OTU 1 seq prokMSA_id:33152 AJ243202.1 Pasteurella skyensis 95A1 2.43.5.14.1.1.8308 OTU 1 seq prokMSA_id:9620 M75039.1 Haemophilus actinomycetemcomitans 2.43.5.14.1.1.8312 OTU 2 seqs prokMSA_id:9623 AF024525.1 Actinobacillus succinogenes str. 130Z prokMSA_id:102230 AY362898.1 Actinobacillus succinogenes str. CCUG 43843 2.43.5.14.1.1.8409 OTU 1 seq prokMSA_id:86047 AF499896.1 human colonic mucosal biopsy clone ABLCf1 2.43.5.14.1.1.8416 OTU 18 seqs prokMSA_id:9468 M75054.1 Pasteurella anatis prokMSA_id:30522 AF228001.1 Gallibacterium anatis str. F 149 prokMSA_id:34804 AF228005.1 Gallibacterium anatis str. Gerl.3348/80 prokMSA_id:48840 AF228006.1 Gallibacterium anatis str. Gerl. 220/s1/89 prokMSA_id:50261 AF228012.1 Gallibacterium anatis str. BK3387.2 prokMSA_id:64294 AY038593.1 Gallibacterium anatis str. B 96/24 prokMSA_id:70037 AF228003.1 Gallibacterium anatis str. CCM 5995 prokMSA_id:70476 AF228009.1 Gallibacterium anatis str. 12158 prokMSA_id:71725 AF228010.1 Gallibacterium anatis str. 20558/3kl prokMSA_id:72708 AF228008.1 Gallibacterium anatis str. 10672/6 Salp prokMSA_id:73007 AY038594.1 Gallibacterium anatis str. Hom.3 prokMSA_id:73377 AF228013.1 Gallibacterium anatis str. BJ3453 prokMSA_id:73524 AF228011.1 Gallibacterium anatis str. 36961/sv7 prokMSA_id:73614 AF228014.1 Gallibacterium anatis str. Gerl.4224 prokMSA_id:73745 AF228007.1 Gallibacterium anatis str. IPDH 697/78 prokMSA_id:74034 AF224310.1 Actinobacillus cf. salpingitidis CCUG 28018 salpingitidis prokMSA_id:74083 AF228002.1 Gallibacterium anatis str. F 279 prokMSA_id:74275 AF228004.1 Gallibacterium anatis str. 10672/9 2.43.5.14.1.1.8432 OTU 1 seq prokMSA_id:79654 AY187378.2 drinking-water biofilm clone csbio160231 2.43.5.14.1.1.8465 OTU 1 seq prokMSA_id:9470 L06078.1 Pasteurella species 2.43.5.14.1.1.8480 OTU 1 seq prokMSA_id:9555 M75064.1 Haemophilus haemoglobinophilus 2.43.5.14.1.1.8555 OTU 15 seqs prokMSA_id:9479 X87976.1 Haemophilus influenzae str. CCUG 7585 prokMSA_id:9514 U65583.1 Actinobacillus porcinus str. NM319 prokMSA_id:44852 AF224306.1 Haemophilus influenzae ATCC 9833 str. ATCC9833 ATCC prokMSA_id:73432 AF224295.1 Actinobacillus capsulatus str. P796 prokMSA_id:82586 AF487728.1 Pasteurella gallinarum str. NCTC 11051 prokMSA_id:82728 AF487729.1 Pasteurella gallinarum str. R44sv prokMSA_id:109502 AY613476.1 Haemophilus influenzae str. M8901 prokMSA_id:109711 AY613454.1 Haemophilus influenzae str. M6954 prokMSA_id:109908 AY613451.1 Haemophilus influenzae str. M9741 prokMSA_id:110117 AY613474.1 Haemophilus influenzae str. M10236 prokMSA_id:110606 AY613457.1 Haemophilus influenzae str. M8943 prokMSA_id:110630 AY613479.1 Haemophilus influenzae str. M8924 prokMSA_id:110669 AY613446.1 Haemophilus influenzae str. M10357 prokMSA_id:110762 AY613475.1 Haemophilus influenzae str. M7027 prokMSA_id:111171 AY613455.1 Haemophilus influenzae str. M8003 2.43.5.14.1.1.8614 OTU 1 seq prokMSA_id:21084 AF359941.1 Acidithiobacillus thiooxidans str. KCTC 8928P 2.43.5.14.1.1.8800 OTU 8 seqs prokMSA_id:9533 AB004028.1 Haemophilus parasuis 354 prokMSA_id:9534 AB004029.1 Haemophilus parasuis 362 prokMSA_id:9535 AB004030.1 Haemophilus parasuis 366 prokMSA_id:9536 AB004036.1 Haemophilus parasuis 697 prokMSA_id:9537 AB004038.1 Haemophilus parasuis str. Nagasaki MAFF 911038 prokMSA_id:23554 AB078974.1 Haemophilus parasuis str. 322 prokMSA_id:24900 AB078973.1 Haemophilus parasuis 319 prokMSA_id:30824 AB078972.1 Haemophilus parasuis 312 2.43.5.14.1.1.8803 OTU 5 seqs prokMSA_id:27031 AF228017.1 Gallibacterium genomosp. 2 str. CCM 5976 prokMSA_id:42277 AF228018.1 Gallibacterium genomosp. 1 str. Gerl. 2740/89 1 prokMSA_id:52792 AF228015.1 Gallibacterium genomosp. 1 str. CCM 5974 prokMSA_id:64296 AY038591.1 Gallibacterium genomosp. 1 str. Gerl.3191 prokMSA_id:70689 AF228016.1 Gallibacterium genomosp. 1 str. CCM 5975 2.43.5.14.1.1.8830 OTU 3 seqs prokMSA_id:9565 L06084.1 Pasteurella species prokMSA_id:72164 AF247714.1 Actinobacillus sp. F92 str. F 92 prokMSA_id:73547 AF247712.1 Actinobacillus sp. str. CCUG 24862 2.43.5.14.1.1.8848 OTU 1 seq prokMSA_id:49556 AF227858.1 clinical isolate 86355 2.43.5.14.1.1.8861 OTU 6 seqs prokMSA_id:9519 AB004024.1 Haemophilus parasuis str. No.131 prokMSA_id:9521 AB004026.1 Haemophilus parasuis 271 prokMSA_id:9523 AB004031.1 Haemophilus parasuis 427 prokMSA_id:9528 AB004037.1 Haemophilus parasuis 82 prokMSA_id:31672 AF268962.1 Actinobacillus indolicus str. H1269 prokMSA_id:71539 AF268959.1 Actinobacillus indolicus str. H873 2.43.5.14.1.1.8876 OTU 1 seq prokMSA_id:9591 AF053894.1 Mannheimia sp. R19.2 str. R19.2; CCUG 38463 R19.2 2.43.5.14.1.1.8935 OTU 4 seqs prokMSA_id:9593 U57071.1 Mannheimia haemolytica str. PH360 prokMSA_id:9601 U57070.1 Mannheimia haemolytica str. PH40 prokMSA_id:9611 AF053893.1 Mannheimia varigena str. 177; CCUG 38462 prokMSA_id:106492 AY425282.1 Mannheimia varigena str. V1835 2.43.5.14.1.1.8938 OTU 8 seqs prokMSA_id:9515 AF025839.1 Actinobacillus rossii str. JF1390 prokMSA_id:29369 AF224290.1 Pasteurella aerogenes str. MCCM 01551 prokMSA_id:73163 AF224289.1 Actinobacillus rossii str. MCCM 02461 prokMSA_id:73923 AF224288.1 Pasteurella aerogenes str. MCCM 01550 prokMSA_id:101766 AY362895.1 Actinobacillus rossii str. ATCC 27072 prokMSA_id:108729 AY431030.1 Actinobacillus rossii str. 6887/76 prokMSA_id:108731 AY431031.1 Actinobacillus rossii str. 16688/74 prokMSA_id:109417 AY465364.1 Actinobacillus rossii str. JF2120 2.43.5.14.1.1.8947 OTU 1 seq prokMSA_id:32352 AJ251339.1 Bisgaardia hudsonenesis str. 98-D-690B 2.43.5.14.1.1.8952 OTU 5 seqs prokMSA_id:9579 M75068.1 Actinobacillus lignieresii prokMSA_id:9581 AF146371.1 Actinobacillus pleuropneumoniae str. 77002 prokMSA_id:9583 AF033059.1 Actinobacillus pleuropneumoniae str. 658 prokMSA_id:9587 M75074.1 Actinobacillus pleuropneumoniae prokMSA_id:42766 AY017472.1 Actinobacillus pleuropneumoniae 2.43.5.14.1.1.9030 OTU 1 seq prokMSA_id:85860 AY216870.1 Volucribacter amazonae str. B96/5 2.43.5.14.1.1.9096 OTU 1 seq prokMSA_id:9608 AF053902.1 Mannheimia granulomatis str. ATCC 49244 2.43.5.14.1.1.9109 OTU 3 seqs prokMSA_id:9602 U57076.1 Pasteurella sp. str. CCUG 16500 prokMSA_id:9612 AF053899.1 Mannheimia varigena str. CCM 5786; F155 prokMSA_id:38515 AF224287.1 Pasteurella haemolytica str. CCUG 28148 2.43.5.14.1.1.9154 OTU 1 seq prokMSA_id:45954 AF224284.1 Actinobacillus sp. str. CCUG 28015 2.43.5.14.1.1.9162 OTU 1 seq prokMSA_id:9619 AF024528.1 Bisgaard Taxon 10 complete isolate str. CCUG 15572 10 2.43.5.14.1.1.9213 OTU 3 seqs prokMSA_id:9484 X87979.1 Haemophilus influenzae str. 2406 prokMSA_id:9509 X87978.1 Haemophilus influenzae str. 16N prokMSA_id:46278 AF224307.1 Haemophilus quentini str. MCCM 02026 2.43.5.14.1.1.9234 OTU 1 seq prokMSA_id:9513 U65584.1 Actinobacillus indolicus str. 46KC2 2.43.5.14.1.1.9237 OTU 50 seqs prokMSA_id:9577 L06076.1 Actinobacillus hominis prokMSA_id:9582 AF033058.1 Actinobacillus pleuropneumoniae str. 634 prokMSA_id:9590 U57072.1 Mannheimia haemolytica str. PH704 prokMSA_id:9592 AF053898.1 Mannheimia sp. HPA121 str. HPA121; CCUG 38468 HPA121 prokMSA_id:9595 M75080.1 Pasteurella haemolytica prokMSA_id:9596 U57066.1 Mannheimia haemolytica str. PH2 PH8 prokMSA_id:9597 AF053888.1 Mannheimia glucosida str. P731; CCUG 38456 prokMSA_id:9598 AF053890.1 Mannheimia glucosida str. UT18; CCUG 38458 prokMSA_id:9599 AF053895.1 Mannheimia sp. HPA102 str. HPA102; CCUG 38464 HPA102 prokMSA_id:9600 AF060699.1 Mannheimia haemolytica prokMSA_id:9603 AF053900.1 Mannheimia ruminalis str. HPA92; CCUG 38470 prokMSA_id:9604 AF053887.1 Mannheimia sp. UT26 str. UT26; CCUG 38455 prokMSA_id:9605 AF053896.1 Mannheimia ruminalis str. HPA98; CCUG38466 prokMSA_id:9606 U57069.1 Mannheimia haemolytica str. PH192 prokMSA_id:9607 AF053892.1 Mannheimia glucosida str. P733; CCUG 38460 prokMSA_id:9610 AF053897.1 Mannheimia glucosida str. P730; CCUG 38467 prokMSA_id:9613 U57068.1 Mannheimia haemolytica str. PH152 prokMSA_id:9614 AF053891.1 Mannheimia glucosida str. P737; CCUG 38459 prokMSA_id:9615 U57067.1 Mannheimia haemolytica str. PH344 prokMSA_id:9616 AF053889.1 Mannheimia glucosida str. P925; CCUG 38457 prokMSA_id:18347 AF371854.1 phylotype OTU-3 swine intestine clone p-1338-a2 prokMSA_id:26862 AF268951.1 Actinobacillus minor str. H1475 prokMSA_id:31668 AF268947.1 Actinobacillus minor str. H1468 prokMSA_id:50727 AF371853.1 phylotype OTU-3 swine intestine clone p-2130-s959-2 prokMSA_id:56644 AF247721.1 Actinobacillus equuli str. T 355/87 prokMSA_id:62471 AF525028.1 Haemophilus ducreyi Amsterdam prokMSA_id:69899 AY029174.1 Actinobacillus arthritidis str. 13/225/95 prokMSA_id:70395 AF247723.1 Actinobacillus lignieresii str. F 264 prokMSA_id:70644 AF486274.1 Actinobacillus porcitonsillarum str. 99-536-55H-F prokMSA_id:72024 AF247719.1 Actinobacillus genomosp. 2 str. H 4272/4 prokMSA_id:73306 AF486275.1 Actinobacillus porcitonsillarum str. RF0347 prokMSA_id:73342 AF247722.1 Actinobacillus lignieresii str. F 127 prokMSA_id:88305 AE017152.1 Haemophilus ducreyi str. 35000HP prokMSA_id:89152 AE017153.1 Haemophilus ducreyi str. 35000HP prokMSA_id:89543 AE017151.1 Haemophilus ducreyi str. 35000HP prokMSA_id:89921 NC_002940.2 Haemophilus ducreyi 35000HP prokMSA_id:90008 AE017156.1 Haemophilus ducreyi str. 35000HP prokMSA_id:91524 AY172728.1 Bisgaard taxon 26 biovar 2 str. F97 prokMSA_id:91684 AY172727.1 Bisgaard taxon 26 biovar 1 str. F66 prokMSA_id:100931 AY362890.1 Actinobacillus hominis str. NCTC 11529 prokMSA_id:102351 AY425290.1 Mannheimia ruminalis str. HPA114 prokMSA_id:102353 AY513483.1 Haemophilus ducreyi str. ATCC 33921 prokMSA_id:102373 AY362899.1 Actinobacillus suis str. ATCC 33415 prokMSA_id:102535 AY362912.1 Mannheimia glucosida str. CCUG 38457 prokMSA_id:102844 AY362914.1 Mannheimia sp. str. NCTC 11313 prokMSA_id:102989 AY362915.1 Mannheimia sp. P373 str. P737 prokMSA_id:103118 AY425295.1 Mannheimia sp. str. BJ3956.1 prokMSA_id:107259 AY425287.1 Mannheimia ruminalis str. HPA93 prokMSA_id:107276 AY362908.1 Haemophilus parainfluenzae str. CCUG 12836 prokMSA_id:107401 AY425288.1 Mannheimia ruminalis str. HPA88 2.43.5.14.1.1.9263 OTU 6 seqs prokMSA_id:9572 M75072.1 Actinobacillus equuli prokMSA_id:9585 M75067.1 Actinobacillus capsulatus prokMSA_id:9586 AF145255.1 Actinobacillus capsulatus str. 63595 prokMSA_id:58551 AF247716.1 Actinobacillus sp. F154 str. F 154 prokMSA_id:58552 AF247715.1 Actinobacillus sp. F119 str. F 119 prokMSA_id:70103 AF381187.1 Actinobacillus cf. equuli str. CCUG 19799 2.43.5.14.1.1.9349 OTU 1 seq prokMSA_id:18332 AF227861.1 Pasteurella sp. str. 91985 2.43.5.14.1.1.9357 OTU 6 seqs prokMSA_id:82532 AF487726.1 Pasteurella gallinarum str. A88 prokMSA_id:83013 AF487724.1 Volucribacter psittacicida str. 103 prokMSA_id:84636 AF487725.1 Pasteurella gallinarum str. CCUG 18400 prokMSA_id:85469 AF487727.1 Pasteurella gallinarum str. PG173 prokMSA_id:86210 AF487722.1 Volucribacter psittacicida str. 94 prokMSA_id:86687 AF487723.1 Volucribacter psittacicida str. 101 2.43.5.14.1.1.9360 OTU 37 seqs prokMSA_id:16802 AY078997.1 Pasteurella multocida str. PM966 prokMSA_id:17819 AF294412.1 Pasteurella multocida subsp. gallicida str. CCUG 17978 subsp. prokMSA_id:18195 AF294411.1 Pasteurella multocida subsp. septica str. CCUG 17977 subsp. prokMSA_id:18868 AY078996.2 Pasteurella multocida str. PM2 prokMSA_id:19379 AF326323.1 Pasteurella multocida subsp. gallicida str. HIM830-7T subsp. prokMSA_id:29263 AF225205.1 Pasteurella multocida subsp. septica str. MCCM 00008 subsp. prokMSA_id:34012 AF224298.1 Pasteurella sp. str. MCCM 00657 prokMSA_id:37549 AY079000.1 Pasteurella multocida subsp. septica str. PM24; NCTC 11995 subsp. prokMSA_id:37670 AY078999.1 Pasteurella multocida subsp. multocida prokMSA_id:42806 AF224297.1 Pasteurella multocida subsp. gallicida str. MCCM 00021 subsp. prokMSA_id:45341 AY078998.1 Pasteurella multocida subsp. gallicida str. NCTC 10204 subsp. prokMSA_id:49634 AF326325.1 Pasteurella multocida subsp. septica str. HIM746-6T subsp. prokMSA_id:62944 AY057994.1 Pasteurella multocida subsp. tigris prokMSA_id:72192 AF326324.1 Pasteurella multocida subsp. gallicida str. 77179 subsp. prokMSA_id:102725 AY299310.1 Pasteurella multocida str. PM62 prokMSA_id:102876 AY299311.1 Pasteurella multocida str. PM104 prokMSA_id:103017 AY299312.1 Pasteurella multocida str. PM30 prokMSA_id:103063 AY316314.1 Pasteurella multocida str. 5 prokMSA_id:103168 AY299313.1 Pasteurella multocida str. PM74 prokMSA_id:103213 AY316315.1 Pasteurella multocida str. 214 prokMSA_id:103310 AY299314.1 Pasteurella multocida str. PM152 prokMSA_id:103358 AY316316.1 Pasteurella multocida str. RA12/2 prokMSA_id:103457 AY299315.1 Pasteurella multocida str. PM64 prokMSA_id:103504 AY316317.1 Pasteurella subsp. multocida str. W208 prokMSA_id:103590 AY299316.1 Pasteurella multocida str. PM106 prokMSA_id:103736 AY299317.1 Pasteurella multocida str. PM60 prokMSA_id:103885 AY299318.1 Pasteurella multocida str. PM80 prokMSA_id:104032 AY299319.1 Pasteurella multocida str. PM82 prokMSA_id:104353 AY507110.1 Pasteurella multocida str. X225 prokMSA_id:107167 AY299304.1 Pasteurella multocida str. PM386 prokMSA_id:107310 AY299305.1 Pasteurella multocida str. PM734 prokMSA_id:107456 AY299306.1 Pasteurella multocida str. PM564 prokMSA_id:107599 AY299307.1 Pasteurella multocida str. PM714 prokMSA_id:107734 AY324032.1 Pasteurella multocida str. PM36 prokMSA_id:107752 AY299308.1 Pasteurella multocida str. PM338 prokMSA_id:111193 AY683490.1 chipmunk isolate str. HIM 1004-6 prokMSA_id:111275 AY683487.1 human bitten tiger isolate str. CDC F4484 2.43.5.14.1.1.9443 OTU 5 seqs prokMSA_id:9551 M75063.1 Pasteurella haemolytica prokMSA_id:9552 U57073.1 NCTC11550 prokMSA_id:9553 U57074.1 NCTC 10641 prokMSA_id:58590 AB080217.1 bovine rumen clone RE8 prokMSA_id:99314 AY362927.1 Pasteurella trehalosi str. NCTC 10370 2.43.5.14.1.1.9470 OTU 2 seqs prokMSA_id:9478 AF012090.1 Pasteurella pneumotropica str. CNP 160 prokMSA_id:74548 AF224301.1 Pasteurellaceae gen. sp. str. Forsyth A3 2.43.5.14.1.1.9476 OTU 1 seq prokMSA_id:69985 AF224296.1 Pasteurella pneumotropica str. NCTC 10827 2.43.5.14.1.1.9477 OTU 46 seqs prokMSA_id:19891 AF224305.1 Haemophilus influenzae ATCC 8142 prokMSA_id:109489 AY613541.1 Haemophilus influenzae str. M9112 prokMSA_id:109490 AY613545.1 Haemophilus influenzae str. M8824 prokMSA_id:109516 AY613551.1 Haemophilus influenzae str. M7278 prokMSA_id:109520 AY613577.1 Haemophilus influenzae str. M10487 prokMSA_id:109643 AY613581.1 Haemophilus influenzae str. M10312 prokMSA_id:109646 AY613569.1 Haemophilus influenzae str. M8825 prokMSA_id:109665 AY613566.1 Haemophilus influenzae str. M9117 prokMSA_id:109688 AY613559.1 Haemophilus influenzae str. M9949 prokMSA_id:109699 AY613576.1 Haemophilus influenzae str. M10715 prokMSA_id:109744 AY613562.1 Haemophilus influenzae str. M9738 prokMSA_id:109912 AY613547.1 Haemophilus influenzae str. M10223 prokMSA_id:109955 AY613544.1 Haemophilus influenzae str. M8723 prokMSA_id:110003 AY613543.1 Haemophilus influenzae str. M10910 prokMSA_id:110116 AY613560.1 Haemophilus influenzae str. M5153 prokMSA_id:110148 AY613546.1 Haemophilus influenzae str. M10127 prokMSA_id:110169 AY613549.1 Haemophilus influenzae str. M11105 prokMSA_id:110179 AY613572.1 Haemophilus influenzae str. M7804 prokMSA_id:110182 AY613565.1 Haemophilus influenzae str. M9201 prokMSA_id:110231 AY613583.1 Haemophilus influenzae str. M10043 prokMSA_id:110254 AY613558.1 Haemophilus influenzae str. M9418 prokMSA_id:110258 AY613578.1 Haemophilus influenzae str. M10486 prokMSA_id:110310 AY613553.1 Haemophilus influenzae str. M7470 prokMSA_id:110320 AY613556.1 Haemophilus influenzae str. M8776 prokMSA_id:110329 AY613567.1 Haemophilus influenzae str. M9114 prokMSA_id:110452 AY613582.1 Haemophilus influenzae str. M10151 prokMSA_id:110469 AY613575.1 Haemophilus influenzae str. M10989 prokMSA_id:110483 AY613579.1 Haemophilus influenzae str. M10468 prokMSA_id:110485 AY613571.1 Haemophilus influenzae str. M7879 prokMSA_id:110533 AY613574.1 Haemophilus influenzae str. M11160 prokMSA_id:110540 AY613555.1 Haemophilus influenzae str. M7809 prokMSA_id:110592 AY613542.1 Haemophilus influenzae str. M10427 prokMSA_id:110615 AY613552.1 Haemophilus influenzae str. M7447 prokMSA_id:110641 AY613557.1 Haemophilus influenzae str. M8942 prokMSA_id:110684 AY613585.1 Haemophilus influenzae str. M10030 prokMSA_id:110828 AY613550.1 Haemophilus influenzae str. M7249 prokMSA_id:110873 AY613548.1 Haemophilus influenzae str. M10232 prokMSA_id:110982 AY613561.1 Haemophilus influenzae str. ATCC8142; M11370 prokMSA_id:111018 AY613563.1 Haemophilus influenzae str. M9694 prokMSA_id:111023 AY613554.1 Haemophilus influenzae str. M7758 prokMSA_id:111027 AY613568.1 Haemophilus influenzae str. M9073 prokMSA_id:111064 AY613564.1 Haemophilus influenzae str. M9374 prokMSA_id:111132 AY613570.1 Haemophilus influenzae str. M8213 prokMSA_id:111133 AY613580.1 Haemophilus influenzae str. M10343 prokMSA_id:111200 AY613573.1 Haemophilus influenzae str. M7760 prokMSA_id:111216 AY613584.1 Haemophilus influenzae str. M10031 2.43.5.14.1.1.9533 OTU 3 seqs prokMSA_id:17538 AF224299.1 Haemophilus segnis str. MCCM 00337 prokMSA_id:54767 AF300472.1 Haemophilus segnis VA24579_00 prokMSA_id:76576 AJ534673.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN19 proteobacterium 2.43.5.14.1.1.9546 OTU 2 seqs prokMSA_id:9510 X89377.1 NCTC 12871 prokMSA_id:106186 AY362889.1 Actinobacillus delphinicola str. NCTC 12870 2.43.5.14.1.1.9552 OTU 1 seq prokMSA_id:9511 X89379.1 NCTC 12872 2.43.5.14.1.1.9587 OTU 4 seqs prokMSA_id:70062 AF268958.1 Actinobacillus porcinus str. H1498 prokMSA_id:71733 AF268955.1 Actinobacillus porcinus str. H1281 prokMSA_id:73816 AF268952.1 Actinobacillus porcinus str. H1215 prokMSA_id:101922 AY362896.1 Actinobacillus porcinus str. CCUG 38924 2.43.5.14.1.1.9604 OTU 1 seq prokMSA_id:72830 AF224286.1 Mannheimia sp. MCCM 00145 2.43.5.14.1.1.9626 OTU 1 seq prokMSA_id:36769 AF224311.1 Haemophilus sp. str. MCCM 01557 2.43.5.14.1.1.9628 OTU 16 seqs prokMSA_id:81053 AF549402.1 Histophilus somni str. 301-90; CCUG 47047 prokMSA_id:81079 AF549387.1 Histophilus somni str. 8025; CCUG 36157; ATCC 43625 prokMSA_id:81142 AF549393.1 Histophilus somni str. CCUG 46774 prokMSA_id:81158 AF549403.1 Histophilus somni str. 189-83; CCUG 47048 prokMSA_id:81203 AF549399.1 Histophilus somni str. CCUG 46773 prokMSA_id:81519 AF549389.1 Histophilus somni str. CCUG 18779 prokMSA_id:81661 AF549397.1 Histophilus somni str. CCUG 46771 prokMSA_id:81866 AF549391.1 Histophilus somni str. CCUG 46775 prokMSA_id:81921 AF549396.1 Histophilus somni str. CCUG 18778 prokMSA_id:82130 AF549392.1 Histophilus somni str. CCUG 18780 prokMSA_id:82188 AF549405.1 Histophilus somni str. 1062-89; CCUG 47050 prokMSA_id:82244 AF549390.1 Histophilus somni str. CCUG 12839 prokMSA_id:82382 AF549400.1 Histophilus somni str. CCUG 36158 prokMSA_id:99929 AF549394.1 Histophilus somni str. CCUG 46770 prokMSA_id:104471 AF549388.1 Histophilus somni str. 2336; CCUG 46769 prokMSA_id:105058 AF549404.1 Histophilus somni str. 939-90; CCUG 47049 2.43.5.14.1.1.9659 OTU 1 seq prokMSA_id:9469 L06079.1 Bisgaard Taxon 3 2.43.5.15 Pseudomonadales 984 seqs 2.43.5.15.1 Moraxellaceae 302 seqs 2.43.5.15.1.1 sf_3 302 seqs 2.43.5.15.1.1.8178 OTU 2 seqs prokMSA_id:52903 AF200213.1 Psychrophilic marine complete and -23S intergenic spacer region isolate str. PS03 bacterium prokMSA_id:79201 AF505736.1 Boston Harbor surface water isolate str. UMB8G 2.43.5.15.1.1.8208 OTU 3 seqs prokMSA_id:8280 X79220.1 Moraxella caviae str. NCTC 10293 prokMSA_id:8281 AF005187.1 Moraxella caviae str. CCUG 355T prokMSA_id:8282 AJ247220.2 Moraxella caviae str. ATCC 14659 2.43.5.15.1.1.8281 OTU 3 seqs prokMSA_id:8296 X74898.1 Psychrobacter phenylpyruvicus str. NCTC 10526 T prokMSA_id:8297 U46144.1 Psychrobacter phenylpyruvicum prokMSA_id:8298 AF005192.1 Psychrobacter phenylpyruvicus str. 752/52 2.43.5.15.1.1.8366 OTU 35 seqs prokMSA_id:8257 AF170743.1 Psychrobacter sp. str. QSSC5-4 prokMSA_id:8305 AF170747.1 Psychrobacter sp. str. QSSC8-7 prokMSA_id:18681 AB016056.1 Psychrobacter pacificensis str. NIBH P2J13 prokMSA_id:24089 AB016054.1 Psychrobacter pacificensis str. NIBH P2J2 prokMSA_id:32985 AJ312213.1 Psychrobacter glacincola str. DSM 12194T prokMSA_id:33577 AB016059.1 Psychrobacter pacificensis str. NIBH P2K18 prokMSA_id:36033 AB016058.1 Psychrobacter pacificensis str. NIBH P2K17 prokMSA_id:39704 AJ308373.1 Norway:Hordaland isolate str. MstK25 prokMSA_id:43031 AB016055.1 Psychrobacter pacificensis str. NIBH P2J3 prokMSA_id:43380 AJ297439.1 Psychrobacter aff. glacinola str. A1/C-aer/OII glacinola prokMSA_id:51114 AJ309942.1 Psychrobacter immobilis str. DSM 7229T prokMSA_id:51808 AB016057.1 Psychrobacter pacificensis str. NIBH P2K6(T)(=IFO 16279(T)) prokMSA_id:62417 AF529097.1 trichloroethene-contaminated site clone FTL207 proteobacterium prokMSA_id:63467 AJ495805.1 Psychrobacter sp. p3C prokMSA_id:69091 AJ310992.1 Psychrobacter sp. str. TAD1 prokMSA_id:75020 AJ430828.1 Psychrobacter luti str. NF11 prokMSA_id:75092 AJ430830.1 Psychrobacter glacincola str. NF7 prokMSA_id:75780 AJ430829.1 Psychrobacter glacincola str. NF1 prokMSA_id:77174 AJ430827.1 Psychrobacter fozii str. NF23 prokMSA_id:79001 AB094456.1 Psychrobacter sp. str. MJYP.15.12 prokMSA_id:79292 AF505724.1 Boston Harbor surface water isolate str. UMB3G UMB3G prokMSA_id:79312 AJ539102.1 Psychrobacter glacialis str. DD43 prokMSA_id:79546 AF505746.1 Boston Harbor surface water isolate str. UMB21A UMB21A prokMSA_id:79867 AF468405.1 Arctic sea ice ARK9987 prokMSA_id:80063 AF468271.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH4-25 prokMSA_id:82102 AY167310.1 Psychrobacter glacincola str. ANT9276b prokMSA_id:86349 AJ440989.1 lake microbial mat isolate str. R-8160 prokMSA_id:88187 AB094794.1 Psychrobacter okhotskensis str. MD17 prokMSA_id:100627 AJ609556.1 Psychrobacter frigidicola str. DSM 12411 prokMSA_id:105736 AY573040.1 Psychrobacter sp. str. ARCTIC-P10 prokMSA_id:106855 AY497354.1 Psychrobacter sp. str. 20 prokMSA_id:108691 AY771717.1 Psychrobacter fozii str. S2-83 prokMSA_id:109826 AY864647.1 Psychrobacter sp. str. DVS8a prokMSA_id:109921 AY864642.1 Psychrobacter sp. str. DVS6b prokMSA_id:110460 AY864646.1 Psychrobacter sp. str. DVS12b 2.43.5.15.1.1.8369 OTU 1 seq prokMSA_id:8249 AF005189.1 Moraxella cuniculi str. CCUG 27179 2.43.5.15.1.1.8565 OTU 1 seq prokMSA_id:8315 Z93454.1 Acinetobacter sp. str. 942 Group BJ17 2.43.5.15.1.1.8574 OTU 1 seq prokMSA_id:34561 AJ269507.1 Moraxella canis str. LMG 11186 (P37) 2.43.5.15.1.1.8582 OTU 2 seqs prokMSA_id:8253 U39399.1 Psychrobacter immobilis prokMSA_id:8255 U46139.1 Psychrobacter immobilis 2.43.5.15.1.1.8604 OTU 1 seq prokMSA_id:56708 AB087260.2 Moraxella oblonga str. IAM 14971 2.43.5.15.1.1.8619 OTU 1 seq prokMSA_id:8322 X89709.1 Acinetobacter sp. 2.43.5.15.1.1.8626 OTU 11 seqs prokMSA_id:8262 AF005190.1 Moraxella osloensis str. 5873 prokMSA_id:8266 AB021321.1 strain isolate str. rJ3 prokMSA_id:8267 X95304.1 Moraxella osloensis str. Ben 58 prokMSA_id:8283 X86616.1 Acinetobacter sp. prokMSA_id:30731 AB074738.1 Japan:Lake Biwa isolate str. S-St(0)-7B prokMSA_id:63603 AY043376.1 Moraxella osloensis str. AU1220 prokMSA_id:72890 AJ505859.1 Moraxella osloensis str. PIV-10-1 prokMSA_id:86658 AJ550856.1 Enhydrobacter aerosaccus str. LMG 21877 = ATCC 27094 prokMSA_id:105643 AY545637.1 Moraxella osloensis str. AHID8007 prokMSA_id:106550 AY730714.1 Moraxella osloensis str. 170804JB8 prokMSA_id:106586 AJ619051.1 Brewery bottling plant clone MTAD19 2.43.5.15.1.1.8656 OTU 1 seq prokMSA_id:48597 AF005186.1 Moraxella ovis str. ATCC 33078T 2.43.5.15.1.1.8688 OTU 94 seqs prokMSA_id:8317 U10874.1 "Acinetobacter anitratus" prokMSA_id:8323 Z93446.1 Acinetobacter sp. str. ATCC 17903 Group TU13 prokMSA_id:8331 X80285.1 Acinetobacter calcoaceticus prokMSA_id:8354 Z93451.1 Acinetobacter sp. str. 78 Group BJ16 prokMSA_id:8359 X81665.1 Acinetobacter lwoffi prokMSA_id:8364 Z93439.1 Acinetobacter sp. str. ATCC 17979 Group six prokMSA_id:8368 X81657.1 Acinetobacter calcoaceticus prokMSA_id:8371 AF159045.1 Acinetobacter calcoaceticus str. A2 prokMSA_id:8375 X81668.1 Acinetobacter calcoaceticus prokMSA_id:8376 Z93448.1 Acinetobacter sp. str. M 151A Group TU15 prokMSA_id:8378 X81661.1 Acinetobacter calcoaceticus prokMSA_id:8379 Z93436.1 Acinetobacter sp. str. ATCC 17922 group three prokMSA_id:8380 Z93449.1 Acinetobacter sp. str. 10090 prokMSA_id:8381 Z93450.1 Acinetobacter sp. str. 10095 prokMSA_id:8383 X81663.1 Acinetobacter johnsonii prokMSA_id:8384 AF015300.1 Acinetobacter sp. str. Hop10 prokMSA_id:8385 X95303.1 Acinetobacter johnsonii str. Ben 56 prokMSA_id:8388 Z93992.1 activated sludge clone T17 prokMSA_id:8390 X86591.1 Acinetobacter sp. prokMSA_id:8391 AF188300.1 Acinetobacter johnsonii str. P152 prokMSA_id:8392 AJ007008.1 Acinetobacter sp. LY1 prokMSA_id:8393 AB002655.1 deepest sea mud Mariana Trench clone prokMSA_id:8394 AB002656.1 deepest sea mud Mariana Trench clone prokMSA_id:8395 AB002657.1 deepest sea mud Mariana Trench clone prokMSA_id:8396 AB002658.1 deepest sea mud Mariana Trench clone prokMSA_id:8397 AB002659.1 deepest sea mud Mariana Trench clone prokMSA_id:8400 U10875.1 Acinetobacter lwoffii prokMSA_id:16782 AJ303012.1 Acinetobacter sp. str. RUH53T (Aci 694) prokMSA_id:16831 AJ301569.1 cf. Acinetobacter sp. clone GR-B1-2-37 prokMSA_id:17087 AJ303010.1 Acinetobacter sp. str. LUH3790 (Aci 584) prokMSA_id:17643 AF189693.1 Acinetobacter sp. str. BC111 prokMSA_id:19785 AF285180.1 Acinetobacter sp. str. KL-9 prokMSA_id:26791 AJ293690.2 Acinetobacter parvus str. LUH3313 (Aci 583) prokMSA_id:28098 AJ296554.1 uranium mining depository deponie B1 clone GR-B1-2-4 GR-B1-2-4 prokMSA_id:28144 Z93440.1 Acinetobacter johnsonii str. ATCC 17909T Group seven prokMSA_id:29243 AJ296555.1 uranium mining depository deponie B1 clone GR-B1-2-39 GR-B1-2-39 prokMSA_id:31733 Z93441.1 Acinetobacter lwoffii str. ATCC 17925 Group eight prokMSA_id:31900 Z93435.1 Acinetobacter baumannii str. ATCC 19606T group two prokMSA_id:34359 AF356748.1 Acinetobacter sp. str. DF4 prokMSA_id:35076 AJ278311.2 Acinetobacter schindleri str. LUH5832T prokMSA_id:35395 AF324538.1 extracted transducing cf. Acinetobacter johnsonii clone BioIuz K38 proteobacterium prokMSA_id:35636 AF336350.1 Acinetobacter sp. str. Wuba25 prokMSA_id:37372 Z93438.1 Acinetobacter junii str. ATCC 17908T Group five prokMSA_id:37719 AF336353.1 Acinetobacter sp. str. Wuba39 prokMSA_id:39106 AY047216.1 Acinetobacter haemolyticus prokMSA_id:40632 AF336348.1 Acinetobacter sp. str. Wuba16 prokMSA_id:43048 AY055373.1 Acinetobacter sp. str. 'anoxic' prokMSA_id:45836 AJ301676.1 Acinetobacter sp. str. LUH1470 prokMSA_id:46650 AF417872.1 Acinetobacter calcoaceticus prokMSA_id:47691 AJ303013.1 Acinetobacter sp. str. DVL00/879 (Aci 698) DVL00/879 prokMSA_id:47756 AF324537.1 extracted transducing cf. Acinetobacter johnsonii clone BioIuz K32 proteobacterium prokMSA_id:48029 AF357182.1 Alvinella pompejana symbiont APG130A prokMSA_id:51684 AF390089.1 Acinetobacter sp. str. W-17 prokMSA_id:52159 AJ296557.1 uranium mining depository deponie B1 clone GR-B1-2-33 GR-B1-2-33 prokMSA_id:56131 AF479380.1 glacial ice isolate str. M3C1.8K-TD8 prokMSA_id:58303 AF543466.1 Alkanindiges hongkongensis str. HKU9 prokMSA_id:58795 AF542962.1 Acinetobacter haemolyticus str. LH168 prokMSA_id:60258 AF509832.1 Acinetobacter genomosp. 11 str. A23 prokMSA_id:60260 AF509829.1 Acinetobacter gerneri str. 9A01 prokMSA_id:60261 AF509828.1 Acinetobacter grimontii str. 17A04 prokMSA_id:60262 AF509831.1 Acinetobacter johnsonii str. 5B02 prokMSA_id:60264 AF509826.1 Acinetobacter tjernbergiae str. 7B02 prokMSA_id:60267 AF509825.1 Acinetobacter tjernbergiae str. 7N16 prokMSA_id:60270 AF509823.1 Acinetobacter towneri str. AB1110 prokMSA_id:60271 AF509820.1 Acinetobacter baylyi str. B2 prokMSA_id:60274 AF509821.1 Acinetobacter baylyi str. C5 prokMSA_id:60277 AF509822.1 Acinetobacter baylyi str. A7 prokMSA_id:62904 E10982.1 Corynebacterium sp. J1 strain prokMSA_id:63612 AY043368.1 Acinetobacter sp. str. AU783 prokMSA_id:64653 AF467305.1 Acinetobacter sp. clone 91_31 prokMSA_id:64657 AF467299.1 Acinetobacter sp. clone 88_6 prokMSA_id:66815 AF430124.1 Acinetobacter sp. str. dcm5A prokMSA_id:68749 AF479352.1 glacial ice isolate str. G50-TB2 prokMSA_id:70386 AJ244764.1 Acinetobacter sp. str. V4.MO.29 = MM_2349 prokMSA_id:71054 AJ275041.2 Acinetobacter schindleri str. LUH 4760 prokMSA_id:71951 AJ293691.1 Acinetobacter parvus str. LUH4616 (Aci602) prokMSA_id:73095 AJ244765.1 Acinetobacter sp. str. V4.ME.25 = MM_2339 prokMSA_id:74353 AF513979.1 Alkanindiges illinoisensis str. MVAB Hex1 prokMSA_id:75661 AJ519657.1 uranium mill tailings soil sample clone GuBH2-AG-14 proteobacterium prokMSA_id:75963 AJ534674.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN113 proteobacterium prokMSA_id:76209 AJ534671.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN1 proteobacterium prokMSA_id:76943 AJ519661.1 uranium mill tailings soil sample clone GuBH2-AG-72 proteobacterium prokMSA_id:77033 AJ519659.1 uranium mill tailings soil sample clone GuBH2-AD-51 proteobacterium prokMSA_id:77294 AY167841.1 Acinetobacter johnsonii str. SAFR-006 prokMSA_id:77683 AB098569.1 Acinetobacter sp. str. TUT1001 prokMSA_id:78104 AB099655.1 Acinetobacter johnsonii str. S35 prokMSA_id:78415 AY177359.2 Acinetobacter sp. str. 11 prokMSA_id:78649 AY176770.1 Acinetobacter lwoffii str. HJ7 prokMSA_id:80373 AF468386.1 Arctic sea ice ARK10033 prokMSA_id:81305 AY237406.1 Acinetobacter sp. str. HJ2 prokMSA_id:81470 AY167273.1 Acinetobacter sp. str. ANT9054 prokMSA_id:83317 AB109775.1 Acinetobacter baumannii str. KF714 prokMSA_id:84033 AY251391.1 Alkanindiges hongkongensis str. HKU9 prokMSA_id:85454 AY244764.1 Acinetobacter sp. str. 2002-2301217 2.43.5.15.1.1.8710 OTU 2 seqs prokMSA_id:8259 AF005182.1 Moraxella bovis str. ATCC 10900T prokMSA_id:8260 AF005183.1 Moraxella bovis str. 5 2.43.5.15.1.1.8727 OTU 1 seq prokMSA_id:84904 AY251390.1 Alkanindiges hongkongensis str. HKU9 2.43.5.15.1.1.8790 OTU 1 seq prokMSA_id:30973 AB022202.1 Marine obligately oligotrophic isolate str. POO-6 2.43.5.15.1.1.8796 OTU 2 seqs prokMSA_id:8320 Z93982.1 activated sludge clone T58 prokMSA_id:8321 Z93988.1 activated sludge clone T23 2.43.5.15.1.1.8838 OTU 12 seqs prokMSA_id:79510 AJ539104.1 Psychrobacter salsus str. DD48 prokMSA_id:79652 AF468384.1 Arctic sea ice ARK10012 prokMSA_id:96330 AJ584831.1 Psychrobacter psychrophilus CMS 30 prokMSA_id:97236 AY383045.1 Psychrobacter sp. str. DY9-2 prokMSA_id:98657 AY382586.1 Psychrobacter sp. str. 9-2 prokMSA_id:99529 AJ748266.1 Psychrobacter psychrophilus CMS 27 prokMSA_id:99685 AJ748267.1 Psychrobacter psychrophilus CMS 28 prokMSA_id:99849 AJ748268.1 Psychrobacter psychrophilus CMS 29 prokMSA_id:99999 AJ748269.1 Psychrobacter psychrophilus CMS 31 prokMSA_id:101359 AJ609272.1 KMM 3646 prokMSA_id:103707 AJ748270.1 Psychrobacter psychrophilus CMS 32 prokMSA_id:109102 AY794153.1 soil clone F3C15 2.43.5.15.1.1.8873 OTU 1 seq prokMSA_id:8254 U85880.1 Psychrobacter immobilis str. IC040 2.43.5.15.1.1.8878 OTU 10 seqs prokMSA_id:8265 U10876.1 Moraxella (Branhamella) catarrhalis prokMSA_id:8278 AF005185.1 Moraxella catarrhalis str. ATCC 25238T prokMSA_id:8279 AJ247218.2 Moraxella catarrhalis str. ATCC 25238 prokMSA_id:8289 L13736.1 Moraxella catarrhalis prokMSA_id:8295 X74903.1 Moraxella catarrhalis str. NCTC 11020 T prokMSA_id:28350 A27627.1 Moraxella catarrhalis prokMSA_id:37189 AF192341.1 Moraxella catarrhalis type 3 prokMSA_id:37220 AF192339.1 Moraxella catarrhalis type 1 prokMSA_id:41825 AF192340.1 Moraxella catarrhalis type 2 prokMSA_id:51485 AJ247219.2 Moraxella catarrhalis str. LMG 1133 2.43.5.15.1.1.8897 OTU 1 seq prokMSA_id:19444 AJ417490.1 Moraxella lincolnii str. CCUG 9405T 2.43.5.15.1.1.8931 OTU 1 seq prokMSA_id:8261 AF005188.1 Moraxella cuniculi str. CCUG 2154T 2.43.5.15.1.1.8993 OTU 2 seqs prokMSA_id:8250 AF005191.1 Moraxella atlantae str. 1922T prokMSA_id:20040 AJ312378.1 Moraxella atlantae str. 104/948 2.43.5.15.1.1.9087 OTU 3 seqs prokMSA_id:40637 AF419203.1 antarctic soil clone bh5.53 prokMSA_id:54940 AF417898.1 antarctic soil clone bh3.5 prokMSA_id:68934 AF417867.1 antarctic soil clone bh1.11 2.43.5.15.1.1.9110 OTU 16 seqs prokMSA_id:21208 AF261040.1 Psychrobacter sp. str. SKA18 prokMSA_id:24648 AJ309941.1 Psychrobacter marincola str. KMM 277 prokMSA_id:27945 AJ309940.1 Psychrobacter submarinus str. KMM 225 prokMSA_id:68772 AF479327.1 glacial ice isolate str. Trans12 prokMSA_id:78979 AB094460.1 Psychrobacter sp. str. 2216.25.11 prokMSA_id:79638 AF468382.1 Arctic sea ice ARK10000 prokMSA_id:80205 AB094937.1 subseafloor sediments Sea Okhotsk clone OHKB11.18 prokMSA_id:93270 AJ551116.1 Psychrobacter sp. mp2 prokMSA_id:93441 AJ551112.1 Psychrobacter sp. wp37 prokMSA_id:93479 AJ551125.1 Psychrobacter sp. es3 prokMSA_id:93494 AJ551110.1 Pseudomonas sp. wp33 prokMSA_id:93781 AJ551095.1 Hyphomicrobium sp. wp14 prokMSA_id:93964 AJ551127.1 Psychrobacter sp. es5 prokMSA_id:94032 AJ551122.1 Psychrobacter sp. mp9 prokMSA_id:94097 AJ551096.1 Psychrobacter sp. wp16 prokMSA_id:102044 AY292940.1 Psychrobacter marincola EH201 2.43.5.15.1.1.9359 OTU 76 seqs prokMSA_id:8310 M34139.1 Acinetobacter calcoaceticus prokMSA_id:8311 Z93434.1 Acinetobacter calcoaceticus str. ATCC 23055T group one prokMSA_id:8312 X95305.1 Acinetobacter sp. str. Ben 59 prokMSA_id:8313 Z93447.1 Acinetobacter sp. str. ATCC 17905 Group TU14 prokMSA_id:8314 Z93453.1 Acinetobacter sp. str. 382 Group BJ14 prokMSA_id:8318 X81667.1 Acinetobacter baumannii prokMSA_id:8326 X81660.1 Acinetobacter baumannii prokMSA_id:8327 X81664.1 Acinetobacter junii prokMSA_id:8330 Z93987.1 activated sludge clone T27 prokMSA_id:8333 U87125.1 Acinetobacter sp. 'SMCC B0445' str. SMCC B0445 prokMSA_id:8334 AB010848.1 strain HTC042 clone HTC042 prokMSA_id:8335 AB010849.1 strain HTC038 clone HTC038 prokMSA_id:8336 X81658.1 Acinetobacter junii prokMSA_id:8342 X81659.1 Acinetobacter species prokMSA_id:8343 AB020207.1 Acinetobacter sp. OM-E81 str. OM-H10 prokMSA_id:8344 Z93443.1 Acinetobacter sp. str. ATCC 17924 Group ten prokMSA_id:8347 X81666.1 Acinetobacter radioresistens prokMSA_id:8349 Z93445.1 Acinetobacter radioresistens str. M 17694T Group twelve prokMSA_id:8386 X89775.1 Acinetobacter johnsonii prokMSA_id:17792 AF417863.1 Acinetobacter junii prokMSA_id:18584 AF220313.1 temperature petroleum reservoir clone O11F12 prokMSA_id:29502 AB062283.1 Acinetobacter sp. str. ST-550 prokMSA_id:30135 AJ291843.1 Acinetobacter sp. IrT-R5M2-7 prokMSA_id:31677 AF392991.1 Acinetobacter sp. str. Sea-12 prokMSA_id:31911 AF143838.1 hydrocarbon-degrading consortium clone AF1.3 prokMSA_id:33723 AF220328.1 temperature petroleum reservoir clone O18A5 prokMSA_id:36199 AJ295007.1 Acinetobacter venetianus str. ATCC 31012 prokMSA_id:43948 Z93444.1 Acinetobacter sp. str. ATCC 11171 Group eleven prokMSA_id:48977 AF189695.1 Acinetobacter sp. str. BC187 prokMSA_id:49347 AF390087.1 Acinetobacter sp. str. Sea-9 prokMSA_id:52109 AJ293694.1 Acinetobacter sp. phenon 3 str. LUH1742T (Aci651) phenon prokMSA_id:56588 AF534215.1 soil clone Phe66 prokMSA_id:58796 AF542963.1 Acinetobacter sp. str. ATCC 31012 prokMSA_id:60333 AF534208.1 soil clone Phe12 prokMSA_id:60335 AF534206.1 soil clone Phe100 prokMSA_id:60337 AF534204.1 soil clone Nap34 prokMSA_id:60341 AF534200.1 soil clone Glu57 prokMSA_id:61831 AF529331.1 PCE-contaminated site clone CLi289 prokMSA_id:62949 AF526908.2 Acinetobacter radioresistens str. 50v1 prokMSA_id:70076 AJ275040.2 Acinetobacter schindleri str. LUH 4591 prokMSA_id:70104 AF220315.1 temperature petroleum reservoir clone O11G12 prokMSA_id:78070 AB074593.1 pea aphid symbiont clone APe9_1 prokMSA_id:78191 AB074592.1 pea aphid symbiont clone Ape4_17 prokMSA_id:79198 AB101444.1 Acinetobacter junii str. S33 prokMSA_id:87534 AY278636.1 Acinetobacter genomosp. C1 prokMSA_id:94043 AJ551155.1 Acinetobacter sp. An17 prokMSA_id:96760 AY380830.1 Acinetobacter sp. str. BCH290703A prokMSA_id:98962 AJ633638.1 Acinetobacter sp. LMG TH120 prokMSA_id:99113 AJ633639.1 Acinetobacter sp. LMG M71 prokMSA_id:99708 AJ785004.1 Acinetobacter junii str. BB1A prokMSA_id:100624 AJ786647.1 Acinetobacter junii str. BB1A prokMSA_id:101304 AY633608.1 Acinetobacter seohaensis str. SW-100 prokMSA_id:102912 AY613433.1 Acinetobacter sp. str. EDP3 prokMSA_id:103011 AB178289.1 deep-sea hydrothermal vent clone MOT-Hvw()-2 prokMSA_id:103428 AY673994.1 Acinetobacter sp. str. PD12 prokMSA_id:104237 AB118222.1 Acinetobacter sp. PAMU-1.11 prokMSA_id:104625 AY604050.1 Chuniespoort group dolomite at 896 meters depth clone DR9IPCB16SCT1 prokMSA_id:105710 AY663435.1 Acinetobacter sp. str. H1 prokMSA_id:106100 AY374112.1 rainbow trout intestinal A75 prokMSA_id:106415 AJ626712.1 Acinetobacter sp. phenon 7 str. LUH 4759 prokMSA_id:107331 AJ633634.1 Acinetobacter sp. phenon 8 prokMSA_id:107477 AJ633635.1 Acinetobacter sp. phenon 9 prokMSA_id:107590 AJ619070.1 Brewery bottling plant clone MTAG9 prokMSA_id:107902 AB167183.1 Acinetobacter sp. str. c1 prokMSA_id:107904 AB167186.1 Acinetobacter sp. str. c4 prokMSA_id:107915 AB167203.1 Acinetobacter sp. str. c26 prokMSA_id:107921 AB167208.1 Acinetobacter sp. str. c40 prokMSA_id:107924 AB167212.1 Acinetobacter sp. str. c47 prokMSA_id:107925 AB167213.1 Acinetobacter sp. str. c48 prokMSA_id:107928 AB167217.1 Acinetobacter sp. str. c56 prokMSA_id:107932 AB167221.1 Acinetobacter sp. str. c60 prokMSA_id:107934 AB167224.1 Acinetobacter sp. str. c65 prokMSA_id:108753 AY796034.1 gold mine bore hole clone 47mm12 prokMSA_id:108769 AY787213.1 Acinetobacter junii str. HQ010320B-1 prokMSA_id:108973 AY800383.1 Acinetobacter calcoaceticus prokMSA_id:111205 AJ853605.1 landfill leachate clone GZKB112 2.43.5.15.1.1.9404 OTU 1 seq prokMSA_id:19349 AJ410289.1 Acinetobacter sp. str. EVA13 2.43.5.15.1.1.9428 OTU 1 seq prokMSA_id:69970 AF143841.1 hydrocarbon-degrading consortium clone AF2-1D 2.43.5.15.1.1.9447 OTU 1 seq prokMSA_id:63614 AY043369.1 Acinetobacter sp. str. AU1523 2.43.5.15.1.1.9466 OTU 1 seq prokMSA_id:56661 AF509830.1 Acinetobacter tandoii str. 4N13 2.43.5.15.1.1.9483 OTU 1 seq prokMSA_id:8387 Z93986.1 clone T39 2.43.5.15.1.1.9573 OTU 5 seqs prokMSA_id:28643 AJ431338.1 Psychrobacter sp. ikaite c11 prokMSA_id:74450 AJ421528.1 Psychrobacter faecalis str. Iso-46 prokMSA_id:85442 AJ437696.1 Psychrobacter pulmonis str. CECT 5989T prokMSA_id:102187 AY394861.1 Psychrobacter sp. str. 763 D prokMSA_id:110245 AJ871083.1 Psychrobacter sp. CK1 2.43.5.15.1.1.9641 OTU 8 seqs prokMSA_id:8351 X81662.1 Acinetobacter haemolyticus prokMSA_id:31749 Z93437.1 Acinetobacter haemolyticus str. ATCC 17906T group four prokMSA_id:64652 AF467306.1 Acinetobacter sp. clone 91_11 prokMSA_id:64656 AF467302.1 Acinetobacter sp. clone 88_17 prokMSA_id:64658 AF467300.1 Acinetobacter sp. clone 91_28 prokMSA_id:64662 AF467295.1 Acinetobacter sp. clone 91_18 prokMSA_id:64666 AF467294.1 Acinetobacter sp. clone 349_19 prokMSA_id:72138 AF467298.1 Acinetobacter sp. clone 349_15 2.43.5.15.2 Pseudomonadaceae 682 seqs 2.43.5.15.2.1 sf_1 682 seqs 2.43.5.15.2.1.8175 OTU 1 seq prokMSA_id:21505 AF452103.1 Cellvibrio japonicus str. NCIMB 10462; NCDO 2697 2.43.5.15.2.1.8209 OTU 2 seqs prokMSA_id:65567 AY095394.1 yard-trimming-compost clone S-23 prokMSA_id:76301 AJ518787.1 uranium mining waste pile clone JG37-AG-122 proteobacterium 2.43.5.15.2.1.8263 OTU 1 seq prokMSA_id:40180 AF321026.1 Pseudomonas migulae 2.43.5.15.2.1.8288 OTU 1 seq prokMSA_id:49890 AB049748.1 Halomonas sp. Loihi-Chm()-8 2.43.5.15.2.1.8330 OTU 1 seq prokMSA_id:8211 U70702.1 Cape Hatteras picoplankton clone OM241 2.43.5.15.2.1.8338 OTU 33 seqs prokMSA_id:8666 D86001.1 Pseudomonas fluorescens str. IAM12022 prokMSA_id:8668 AB015557.1 deep-sea sediment clone BD4-3 prokMSA_id:8669 AB013253.1 deep-sea sediment clone NKB1 prokMSA_id:8710 AF137359.1 Pseudomonas fluorescens prokMSA_id:8716 AB015575.1 deep-sea sediment clone BD6-5 prokMSA_id:19748 AF320986.1 Pseudomonas tolaasii str. NCPPB 1116 prokMSA_id:21571 AF094750.1 Pseudomonas tolaasii str. ATCC 33618 prokMSA_id:26547 AF094725.1 Pseudomonas fluorescens str. ATCC 13525 prokMSA_id:27387 AF451270.1 Pseudomonas sp. str. E102 prokMSA_id:29039 AF094729.1 Pseudomonas fluorescens str. ATCC 17556 prokMSA_id:33184 AJ308303.1 Pseudomonas fluorescens str. Biotype ICMP 13622; ATCC 17555 prokMSA_id:37361 AF320990.1 Pseudomonas tolaasii str. NCPPB 2325 prokMSA_id:37579 AJ308307.1 Pseudomonas fluorescens str. Biotype G ICMP 13621; ATCC 17518 prokMSA_id:38915 AY014829.1 Pseudomonas sp. str. NZ124 prokMSA_id:42961 AF255336.1 Pseudomonas tolaasii str. LMG 2342 T prokMSA_id:46670 AF326356.1 Pseudomonas sp. str. G2 prokMSA_id:48111 AF267911.1 Pseudomonas synxantha str. DSM 13080 G prokMSA_id:50836 AF320992.1 Pseudomonas tolaasii str. NCPPB 741 prokMSA_id:52401 AY014823.1 Pseudomonas sp. str. NZ106 prokMSA_id:59919 AY133072.1 TCE-contaminated site clone ccs242 prokMSA_id:60448 AY131215.1 Pseudomonas sp. str. Fa3 prokMSA_id:63913 AJ492831.1 Pseudomonas trivialis str. DSM 14937 = LMG 21464 P 513/19 prokMSA_id:63914 AJ492829.1 Pseudomonas poae str. DSM 14936 = LMG 21465 P 527/13 prokMSA_id:67535 AF374472.1 Pseudomonas costantinii str. CFBP 5705; HAMBI 2444 prokMSA_id:71567 AJ308308.1 Pseudomonas fluorescens ICMP 3512; ATCC 13525; NCIB 9046 prokMSA_id:72253 AY014800.1 Pseudomonas sp. str. NZ006 prokMSA_id:73710 AF205138.1 Pseudomonas sp. 'FSL R1-195' str. FSL R1-195 'FSL prokMSA_id:74047 AF320988.1 Pseudomonas tolaasii str. NCPPB 2192 prokMSA_id:74265 AY014807.1 Pseudomonas sp. str. NZ031 prokMSA_id:77892 AB098591.1 Pseudomonas sp. str. TUT1023 prokMSA_id:79739 AF468404.1 Arctic sea ice ARK9971 prokMSA_id:84439 AY277894.1 Pseudomonas reactans str. strain DS-4 prokMSA_id:86068 AY263477.1 Pseudomonas sp. SE22#1a 2.43.5.15.2.1.8344 OTU 1 seq prokMSA_id:55384 AF425998.1 Anabaena circinalis AWQC118C isolate str. UNSW3 2.43.5.15.2.1.8433 OTU 87 seqs prokMSA_id:8611 D84010.1 "Pseudomonas caricapapayae" prokMSA_id:8613 AF105388.1 Pseudomonas sp. PsJ prokMSA_id:8614 AF105385.1 Pseudomonas sp. PsG prokMSA_id:8615 AF105383.1 Pseudomonas sp. PsE prokMSA_id:8616 AF105382.1 Pseudomonas sp. PsD prokMSA_id:8617 AF105380.1 Pseudomonas sp. PsB prokMSA_id:8618 AF105379.1 Pseudomonas sp. PsA prokMSA_id:8620 D84012.1 Pseudomonas corrugata prokMSA_id:8622 AF100321.1 Pseudomonas brassicacearum str. DBK11; CFBP 11706 prokMSA_id:8639 Z76669.1 Pseudomonas syringae str. LMG 1247t1T (; pathovar reference strain) prokMSA_id:8641 AF195877.1 Pseudomonas sp. str. J1 prokMSA_id:8648 AB021402.1 Pseudomonas savastanoi str. ATCC 13522T prokMSA_id:8653 AF058286.1 Pseudomonas mandelii str. CIP 105273 prokMSA_id:8658 AB021382.1 Pseudomonas meliae str. MAFF 301463T prokMSA_id:8674 AF105387.1 Pseudomonas sp. PsI prokMSA_id:8675 AF105386.1 Pseudomonas sp. PsH prokMSA_id:8680 AF100322.1 Pseudomonas brassicacearum str. NFM421; CFBP 11874 prokMSA_id:8681 AF100323.1 Pseudomonas thivervalensis str. SBK26; CFBP 11261T prokMSA_id:8690 AF177916.1 Pseudomonas sp. str. DhA-91 prokMSA_id:8697 AB003628.1 Pseudomonas sp. str. 35L prokMSA_id:8702 Z76656.1 Pseudomonas chlororaphis str. DSM 6698T () prokMSA_id:8741 D86004.1 Pseudomonas chlororaphis str. IFO 3904 prokMSA_id:16541 AB001448.1 Pseudomonas syringae pv. phaseolicola prokMSA_id:17462 AY047218.1 Pseudomonas migulae prokMSA_id:19236 AY035996.1 Pseudomonas lini str. CFBP 5737 prokMSA_id:19470 AY014805.1 Pseudomonas sp. str. NZ017 prokMSA_id:20085 AF326378.1 Pseudomonas sp. str. MG1 prokMSA_id:20629 AB001441.1 Pseudomonas syringae pv. broussonetiae str. KOZ 8101 pv. prokMSA_id:20653 AJ417068.1 Pseudomonas sp. str. CM1'A2 prokMSA_id:21916 AJ278814.1 Pseudomonas fluorescens str. F113 prokMSA_id:22611 AJ417070.1 Pseudomonas sp. str. PITR2 prokMSA_id:24541 AY029759.1 Pseudomonas sp. str. SMCC B0333 prokMSA_id:26680 AJ278813.1 Pseudomonas fluorescens str. Q2-87 prokMSA_id:30745 AB051699.1 Pseudomonas sp. str. LAB-23 prokMSA_id:35287 AJ292426.1 Pseudomonas kilonensis str. 520-20 prokMSA_id:35650 AF094749.1 Pseudomonas syringae str. ATCC 19310 prokMSA_id:37569 AF351240.1 Pseudomonas sp. str. cb3 prokMSA_id:37605 AJ308306.1 Pseudomonas fluorescens str. Biotype F ICMP 13616; ATCC 12983 prokMSA_id:38949 AJ417074.1 Pseudomonas sp. str. Q65c-80 prokMSA_id:38968 Z76673.1 Pseudomonas chlororaphis str. DSM 50083T () prokMSA_id:42258 AB001446.1 Pseudomonas syringae pv. mori str. MAFF 302279 pv. prokMSA_id:43042 AB001443.1 Pseudomonas syringae pv. glycinea str. MAFF 302260 pv. prokMSA_id:43071 AJ237965.1 Pseudomonas sp. EK1 prokMSA_id:43799 AB001442.1 Pseudomonas syringae pv. eriobotryae str. MAFF 302259 pv. prokMSA_id:45704 AB001447.1 Pseudomonas syringae pv. myricae str. MAFF 301464 pv. prokMSA_id:50915 AJ292381.1 Pseudomonas brassicacearum str. 520-1 prokMSA_id:51252 AJ306832.1 Portugal clone prokMSA_id:52123 AB001449.1 Pseudomonas syringae pv. tagetis str. MAFF 302271 pv. prokMSA_id:52266 AJ417069.1 Pseudomonas sp. str. Q37-87 prokMSA_id:53538 AF094723.1 Pseudomonas chlororaphis str. ATCC 9446 prokMSA_id:58730 AF521652.1 Pseudomonas sp. str. 9-1 prokMSA_id:60339 AF534202.1 soil clone Nap14 prokMSA_id:61845 AF529319.1 PCE-contaminated site clone CLi21 prokMSA_id:63915 AJ492828.1 Pseudomonas congelans str. DSM 14939 = LMG 21466 P 538/23 prokMSA_id:63918 AJ492826.1 Pseudomonas tremae str. CFBP 6111 prokMSA_id:63919 AJ492827.1 Pseudomonas cannabina str. CFBP 2341 prokMSA_id:69974 AF094722.1 Pseudomonas chlororaphis str. ATCC 13985 prokMSA_id:70054 AF326374.1 Pseudomonas sp. str. GB13 prokMSA_id:70756 AJ308300.1 Pseudomonas chlororaphis ICMP 13610; NRRL B-1576 prokMSA_id:77306 AF456215.1 Pseudomonas sp. str. New10530 FPTPN genomospecies 2 New10530 prokMSA_id:77313 AF456213.1 Pseudomonas sp. str. gs14 stunt cotton soil gs14 prokMSA_id:77337 AF456219.1 Pseudomonas sp. str. S55-6 stunt cotton roots S55-6 prokMSA_id:77356 AF456226.1 Pseudomonas sp. str. 34K4 stunt cotton soil 34K4 prokMSA_id:77373 AF456217.1 Pseudomonas sp. str. GS61 stunt cotton roots GS61 prokMSA_id:77380 AF456231.1 Pseudomonas sp. str. S23-11 stunt cotton roots S23-11 prokMSA_id:77396 AF456224.1 Pseudomonas sp. str. 28R14a stunt cotton soil 28R14a prokMSA_id:77402 AF456216.1 Pseudomonas sp. str. GS49 stunt cotton roots GS49 prokMSA_id:77405 AF456220.1 Pseudomonas sp. str. S57-2 stunt cotton roots S57-2 prokMSA_id:77460 AF456225.1 Pseudomonas sp. str. S67-2 stunt cotton roots S67-2 prokMSA_id:77463 AF456227.1 Pseudomonas sp. str. 34t20 stunt cotton soil 34t20 prokMSA_id:77468 AF456214.1 Pseudomonas sp. str. New10529 FPTPN genomospecies 1 New10529 prokMSA_id:77477 AF456212.1 Pseudomonas sp. str. gs7 stunt cotton soil gs7 prokMSA_id:77482 AF456223.1 Pseudomonas sp. str. S67-3 stunt cotton roots S67-3 prokMSA_id:79193 AF468451.1 Pseudomonas koreensis str. Ps 1-2 prokMSA_id:81754 AY179326.1 Pseudomonas mandelii prokMSA_id:82755 AB109218.1 Pseudomonas syringae pv. pisi str. PP105 prokMSA_id:83026 AY267367.1 Pseudomonas sp. str. BTs10022 prokMSA_id:83047 AY263471.1 Pseudomonas sp. BE1dil prokMSA_id:83510 AJ550465.1 Pseudomonas chlororaphis prokMSA_id:83659 AY263478.1 Pseudomonas sp. SE22#2 prokMSA_id:83726 AY263476.1 Pseudomonas sp. SE7#1 prokMSA_id:84130 AY263472.1 Pseudomonas sp. BE3dil prokMSA_id:84597 AY263468.1 Pseudomonas sp. BG2dil prokMSA_id:84747 AY263474.1 Pseudomonas sp. WE7#1b prokMSA_id:85041 AY263482.1 Pseudomonas sp. '11/20CMC control' 11/20CMC control '11/20CMC prokMSA_id:85772 AY263470.1 Pseudomonas sp. WG22#2 prokMSA_id:86377 AY263479.1 Pseudomonas sp. R1enr 2.43.5.15.2.1.8474 OTU 1 seq prokMSA_id:75843 AJ534672.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN7 proteobacterium 2.43.5.15.2.1.8486 OTU 1 seq prokMSA_id:45928 AF422620.1 clone t051 2.43.5.15.2.1.8487 OTU 1 seq prokMSA_id:8443 AF023658.1 Pseudomonas aeruginosa str. CW-96-1 2.43.5.15.2.1.8508 OTU 6 seqs prokMSA_id:8426 Z76659.1 Pseudomonas citronellolis str. DSM 50332T () prokMSA_id:8427 AB021396.1 Pseudomonas citronellolis str. ATCC 13674T prokMSA_id:8428 Y13246.1 Pseudomonas sp. str. A3 prokMSA_id:32513 AF208025.1 Pseudomonas sp. str. AT2 prokMSA_id:58403 AB007999.1 Pseudomonas sp. str. WAS2 prokMSA_id:70116 AF530073.1 Pseudomonas citronellolis str. TERIDB26 2.43.5.15.2.1.8513 OTU 8 seqs prokMSA_id:8588 AF064458.1 Pseudomonas monteilii str. CIP 104883 prokMSA_id:8594 D85991.1 Pseudomonas putida str. A10L prokMSA_id:8595 D85996.1 Pseudomonas putida str. BH prokMSA_id:8599 AB009457.1 Pseudomonas plecoglossicida str. FPC951 prokMSA_id:28946 AB029257.1 Pseudomonas putida str. IH-2000 prokMSA_id:37877 AF094737.1 Pseudomonas putida str. ATCC 17390 prokMSA_id:46291 AF291048.1 Pseudomonas putida prokMSA_id:66895 AY032725.1 Pseudomonas sp. str. HR 13 2.43.5.15.2.1.8540 OTU 5 seqs prokMSA_id:8598 AB030085.1 Pseudomonas sp. str. MBIC2027 O6S2-1 prokMSA_id:28224 AF299120.1 S17sBac13 complete clone prokMSA_id:75047 AJ294342.1 Pseudomonas sp. HY-95/2-1 prokMSA_id:100555 AB125366.1 Pseudomonas pachastrellae str. KMM 330 prokMSA_id:100711 AB125367.1 Pseudomonas pachastrellae str. KMM 331 2.43.5.15.2.1.8553 OTU 11 seqs prokMSA_id:8517 Z76664.1 Pseudomonas mendocina str. LMG 1223T () prokMSA_id:39176 AB045280.1 Pseudomonas sp. str. HMD H5 prokMSA_id:62345 AB060135.1 Pseudomonas straminea str. IAM 1587 prokMSA_id:66624 AF500276.1 Pseudomonas sp. str. SMCC B0138 prokMSA_id:70462 AJ308310.1 Pseudomonas mendocina ICMP 13540; ATCC 25411 prokMSA_id:71894 Z76674.1 Pseudomonas mendocina str. DSM 50017T () prokMSA_id:91103 AY345382.1 Loihi submarine volcano isolate str. JB17 prokMSA_id:91717 AY345470.1 Lake Kauhako water isolate str. K49 prokMSA_id:102296 AY622234.1 subsurface soil clone C-CU62 prokMSA_id:107075 AB046997.1 Pseudomonas fulva str. IAM 1587 prokMSA_id:112002 AY880303.1 Pseudomonas pseudoalcaligenes str. M5-4 2.43.5.15.2.1.8561 OTU 1 seq prokMSA_id:45357 AF332541.1 Pseudomonas sp. B65 2.43.5.15.2.1.8601 OTU 10 seqs prokMSA_id:8732 Z76663.1 Pseudomonas marginalis str. LMG 2210T (; pathovar reference strain) prokMSA_id:8733 AB021401.1 Pseudomonas marginalis str. ATCC 10844T prokMSA_id:8734 AB024413.1 Pseudomonas sp. str. KB700A prokMSA_id:28467 AF448041.1 Pseudomonas sp. str. SCD-7 prokMSA_id:33387 AF251337.1 Pseudomonas sp. str. SV23 prokMSA_id:35880 AF313466.1 Pseudomonas veronii prokMSA_id:49007 AY071916.1 Pseudomonas marginalis str. BJW1 prokMSA_id:78991 AY177777.1 soil clone prokMSA_id:110747 AY770719.1 sea squirt Microcosmus sp. clone MspS75 prokMSA_id:114028 AY902200.1 Pseudomonas sp. str. R2A1 2.43.5.15.2.1.8615 OTU 3 seqs prokMSA_id:27446 AJ296560.1 uranium mining mill tailing clone GR-Sh1-163 prokMSA_id:66956 AF482685.1 Pseudomonas sp. str. NMX prokMSA_id:108069 AJ786794.1 Pseudomonas sp. R-20955 2.43.5.15.2.1.8635 OTU 1 seq prokMSA_id:22832 AF321023.1 Pseudomonas putida str. GOBB3-305 2.43.5.15.2.1.8685 OTU 1 seq prokMSA_id:25527 AF448514.1 Cellvibrio fulvus str. NCIMB 8634 2.43.5.15.2.1.8687 OTU 47 seqs prokMSA_id:8685 D86000.1 Pseudomonas putida str. NCIMB 9816 prokMSA_id:8788 D85995.1 Pseudomonas putida str. ATCC 17522 prokMSA_id:24808 AF094738.1 Pseudomonas putida str. ATCC 17472 prokMSA_id:32635 AY050495.1 Pseudomonas corrugata str. SB4 prokMSA_id:33516 AJ308312.1 Pseudomonas putida str. Biotype B ICMP 13630; ATCC 17472; NCIB 11772 prokMSA_id:40738 AB051702.1 Pseudomonas sp. str. LAB-36 prokMSA_id:43226 AB051694.1 Pseudomonas sp. str. LAB-08 prokMSA_id:51775 AY014808.1 Pseudomonas sp. str. NZ039 prokMSA_id:52364 AB051700.1 Pseudomonas sp. str. LAB-26 prokMSA_id:75222 AJ532710.1 uranium mining waste pile clone JG34-KF-115 proteobacterium prokMSA_id:76308 AJ519660.1 uranium mill tailings soil sample clone GuBH2-AG-52 proteobacterium prokMSA_id:78081 AB074630.1 pea aphid symbiont clone APe4_13 prokMSA_id:85385 AJ441004.1 lake microbial mat isolate str. R-9113 prokMSA_id:93297 AY364086.1 Pseudomonas sp. 'ARDRA PS2' str. ARDRA PS2 prokMSA_id:99938 AY331341.1 Pseudomonas sp. str. MFY30 prokMSA_id:100102 AY331342.1 Pseudomonas sp. str. MFY31 prokMSA_id:100421 AY331344.1 Pseudomonas sp. str. MFY33 prokMSA_id:100574 AY331345.1 Pseudomonas sp. str. MFY52 prokMSA_id:100991 AY331360.1 Pseudomonas sp. str. MFY81 prokMSA_id:101154 AY331361.1 Pseudomonas sp. str. MFY82 prokMSA_id:101307 AY331362.1 Pseudomonas sp. str. MFY106 prokMSA_id:101384 AJ830707.1 Pseudomonas rhodesiae KCM-R5 prokMSA_id:101483 AY331363.1 Pseudomonas sp. str. MFY107 prokMSA_id:101652 AY331364.1 Pseudomonas sp. str. MFY116 prokMSA_id:101814 AY331365.1 Pseudomonas sp. str. MFY122 prokMSA_id:101970 AY331366.1 Pseudomonas sp. str. MFY138 prokMSA_id:102127 AY331367.1 Pseudomonas sp. str. MFY140 prokMSA_id:102177 AY512603.1 Pseudomonas sp. str. A3YdBTEX2-4 prokMSA_id:102228 AY331380.1 Pseudomonas sp. str. MFY338 prokMSA_id:102320 AY512604.1 Pseudomonas sp. str. A3YdBTEX1-5 prokMSA_id:102481 AY512605.1 Pseudomonas sp. str. IA2YCDO prokMSA_id:102635 AY512606.1 Pseudomonas sp. str. A3-104 prokMSA_id:102790 AY512607.1 Pseudomonas sp. str. A3YXyl2-4 prokMSA_id:104799 AY531218.1 Hs1 prokMSA_id:105787 AY331356.1 Pseudomonas sp. str. MFY76 prokMSA_id:105917 AJ846270.1 Pseudomonas sp. HHS5 prokMSA_id:106034 AY331370.1 Pseudomonas sp. str. MFY152 prokMSA_id:106181 AY331371.1 Pseudomonas sp. str. MFY160 prokMSA_id:106250 AY331359.1 Pseudomonas sp. str. MFY80 prokMSA_id:106673 AY331374.1 Pseudomonas sp. str. MFY220 prokMSA_id:106823 AY331375.1 Pseudomonas sp. str. MFY222 prokMSA_id:106964 AY331376.1 Pseudomonas sp. str. MFY234 prokMSA_id:107126 AY331377.1 Pseudomonas sp. str. MFY245 prokMSA_id:107273 AY331378.1 Pseudomonas sp. str. MFY314 prokMSA_id:107417 AY331379.1 Pseudomonas sp. str. MFY315 prokMSA_id:107953 AB167245.1 Pseudomonas syringae str. c121 prokMSA_id:107956 AB167247.1 Pseudomonas borealis str. c134 2.43.5.15.2.1.8691 OTU 40 seqs prokMSA_id:8435 Z76651.1 Pseudomonas aeruginosa str. LMG 1242T () prokMSA_id:8437 U38445.1 Pseudomonas aeruginosa prokMSA_id:8438 D87346.1 Pseudomonas sp prokMSA_id:8441 AJ009462.1 anaerobic TCB-transforming consortium clone SJA-38 prokMSA_id:8442 AJ009472.1 anaerobic TCB-transforming consortium clone SJA-64 prokMSA_id:8444 AJ249451.1 Pseudomonas aeruginosa str. AL98 prokMSA_id:8446 AF157689.1 Pseudomonas aeruginosa str. 86351 prokMSA_id:8448 AB015516.1 deep-sea sediment clone BD1-3 prokMSA_id:8449 AB015554.1 deep-sea sediment clone BD3-13 prokMSA_id:8450 AB015563.1 deep-sea sediment clone BD4-16 prokMSA_id:8452 AB015573.1 deep-sea sediment clone BD6-3 prokMSA_id:8454 AB015249.1 deepest cold-seep area Japan Trench clone JTB12 proteobacterium prokMSA_id:8455 AF031152.1 Pseudomonas sp. str. Bu34 prokMSA_id:16918 AB037552.1 Pseudomonas aeruginosa str. #790 prokMSA_id:18018 AF237678.1 Pseudomonas aeruginosa str. M2E prokMSA_id:30696 AB073312.1 Pseudomonas aeruginosa prokMSA_id:31055 AB037547.1 Pseudomonas aeruginosa str. #129 prokMSA_id:33622 AB037554.1 Pseudomonas aeruginosa str. #797 prokMSA_id:35045 AF094713.1 Pseudomonas aeruginosa str. ATCC 10145 prokMSA_id:38254 AB037560.1 Pseudomonas aeruginosa str. H636 prokMSA_id:43659 AB037557.1 Pseudomonas aeruginosa str. #985-02 prokMSA_id:44181 AF227866.1 str. 61716 prokMSA_id:45396 AJ387904.1 Pseudomonas sp. str. OLB-1 prokMSA_id:50970 AF417876.1 Pseudomonas aeruginosa prokMSA_id:51883 AB037553.1 Pseudomonas aeruginosa str. #796 prokMSA_id:52590 AB037548.1 Pseudomonas aeruginosa str. #649 prokMSA_id:52867 AB037562.1 Pseudomonas aeruginosa str. H707 prokMSA_id:59263 AE004501.1 Pseudomonas aeruginosa str. PAO1 prokMSA_id:61832 AF529330.1 PCE-contaminated site clone CLi288 prokMSA_id:62409 AF529105.1 trichloroethene-contaminated site clone FTL229 proteobacterium prokMSA_id:70154 Z76672.1 Pseudomonas aeruginosa str. DSM 50071T () prokMSA_id:70447 AF094720.1 Pseudomonas aeruginosa str. ATCC 33350 prokMSA_id:71400 AF094716.1 Pseudomonas aeruginosa str. ATCC 27316 prokMSA_id:73809 AF094719.1 Pseudomonas aeruginosa str. ATCC 27853 prokMSA_id:74648 AB037561.1 Pseudomonas aeruginosa str. H706 prokMSA_id:76656 AY162139.1 Pseudomonas aeruginosa str. BHP7-6 prokMSA_id:78808 AB088116.1 Pseudomonas thermaerum str. T1 prokMSA_id:81887 AJ550306.1 Pseudomonas aeruginosa OK1 prokMSA_id:104050 AY486364.1 Pseudomonas aeruginosa str. AU3494 prokMSA_id:111937 AF448033.1 Pseudomonas aeruginosa str. S1-1 2.43.5.15.2.1.8708 OTU 19 seqs prokMSA_id:8665 D84013.1 Pseudomonas fluorescens prokMSA_id:8714 AB021410.1 Pseudomonas rhodesiae str. CIP 104664T prokMSA_id:8723 Z29622.1 Pseudomonas species prokMSA_id:8726 AF112477.1 Azospirillum sp prokMSA_id:8767 D84009.1 Pseudomonas azotoformans prokMSA_id:16371 AF451275.2 Pseudomonas sp. str. AH2 prokMSA_id:43326 AY014811.1 Pseudomonas sp. str. NZ052 prokMSA_id:61816 AF529346.1 PCE-contaminated site clone CLs104 prokMSA_id:67413 AY091528.1 Pseudomonas salomonii str. CFBP 2022 prokMSA_id:72676 AF479375.1 glacial ice isolate str. M3C4.1K-B34 prokMSA_id:73522 AY014827.1 Pseudomonas sp. str. NZ113 prokMSA_id:73574 AY014813.1 Pseudomonas sp. str. NZ060 prokMSA_id:73740 AY014825.1 Pseudomonas sp. str. NZ111 prokMSA_id:76605 AJ534625.1 soil sample uranium mining waste pile near town Johanngeorgenstadt clone JG36-TzT-72 proteobacterium prokMSA_id:83167 AY166836.1 Pseudomonas sp. clone type IV prokMSA_id:85062 AJ556801.1 Pseudomonas sp. MWH1 prokMSA_id:90111 AY308049.1 Pseudomonas sp. str. AZ22R11 prokMSA_id:105687 AY730552.1 Pseudomonas fluorescens str. VH060479 prokMSA_id:106853 AJ846276.1 Pseudomonas sp. HHS9 2.43.5.15.2.1.8725 OTU 2 seqs prokMSA_id:47897 AJ419674.1 Pseudomonas sp. str. 2N1-1 prokMSA_id:75837 AJ532691.1 uranium mill tailings clone Gitt-KF-67 2.43.5.15.2.1.8754 OTU 5 seqs prokMSA_id:8417 AB021329.1 strain isolate str. rJ11 prokMSA_id:8418 AB021335.1 strain isolate str. rJ17 prokMSA_id:8419 X96787.1 Pseudomonas sp. str. IpA-1 prokMSA_id:20529 AB076857.1 Pseudomonas sp. str. P400Y-1 prokMSA_id:35995 AJ306834.1 Portugal clone 2.43.5.15.2.1.8755 OTU 1 seq prokMSA_id:73856 AJ288146.1 Pseudomonas sp. SK-1-3-1 2.43.5.15.2.1.8777 OTU 2 seqs prokMSA_id:8500 AF170358.1 Pseudomonas sp. str. PK prokMSA_id:71836 AB095005.1 Pseudomonas sp. str. KNA6-5 2.43.5.15.2.1.8786 OTU 1 seq prokMSA_id:73539 AJ289163.1 Cellvibrio sp. str. R-4075 2.43.5.15.2.1.8802 OTU 2 seqs prokMSA_id:46393 AJ289162.1 Cellvibrio gandavensis str. R-4069 prokMSA_id:103851 AY212727.1 water 5 m downstream manure clone 33ds5 2.43.5.15.2.1.8813 OTU 1 seq prokMSA_id:77437 AY150184.1 Lyrodus pedicellatus symbiont 2.43.5.15.2.1.8827 OTU 1 seq prokMSA_id:8525 AF140011.1 Pseudomonas pseudoalcaligenes str. ML-A04 2.43.5.15.2.1.8831 OTU 2 seqs prokMSA_id:27037 AF229864.1 Pseudomonas sp. str. 2FB9 prokMSA_id:87080 AJ312229.1 Pseudomonas stutzeri str. 24a75 2.43.5.15.2.1.8850 OTU 1 seq prokMSA_id:8531 D88521.1 Agrobacterium agile str. IAM12615 2.43.5.15.2.1.8852 OTU 12 seqs prokMSA_id:8498 AF067960.1 Pseudomonas stutzeri str. KC prokMSA_id:8499 AF038653.1 Pseudomonas stutzeri str. WM88 prokMSA_id:8502 AF063219.1 Pseudomonas stutzeri str. KC prokMSA_id:18824 AJ270452.1 Pseudomonas stutzeri str. 11C2 marine sediment Schillig prokMSA_id:22736 AJ270453.1 Pseudomonas stutzeri str. 3C59 marine sediment Dangast I prokMSA_id:25407 AY017341.1 Pseudomonas chloritidismutans str. AW-1 prokMSA_id:60916 AJ312176.1 Pseudomonas stutzeri str. 24a51 prokMSA_id:60917 AJ312175.1 Pseudomonas stutzeri str. 24a43 prokMSA_id:60920 AJ312172.1 Pseudomonas stutzeri str. 24a97 prokMSA_id:60925 AJ312156.1 Pseudomonas stutzeri str. 20G prokMSA_id:72822 AJ312174.1 Pseudomonas stutzeri str. 24a112 prokMSA_id:87959 AJ312160.1 Pseudomonas stutzeri str. 4C74 2.43.5.15.2.1.8853 OTU 3 seqs prokMSA_id:8637 Z76658.1 Pseudomonas cichorii str. LMG 2162T () prokMSA_id:8638 AB021398.1 Pseudomonas cichorii str. ATCC 10857T prokMSA_id:30292 AJ308302.1 Pseudomonas cichorii ICMP 5707; ATCC 10857 2.43.5.15.2.1.8859 OTU 4 seqs prokMSA_id:44232 AF393509.1 Russia: Siberia isolate str. N9-1 prokMSA_id:82664 AY239533.1 whey-based wastewater clone CARB_ESS_2 prokMSA_id:83437 AY239541.1 whey-based wastewater clone CARB_ESS_10 prokMSA_id:105353 AY443041.1 Pseudomonas sp. str. HS5322 2.43.5.15.2.1.8868 OTU 1 seq prokMSA_id:8532 AF035211.1 Azotobacter chroococcum str. ATCC 9043 2.43.5.15.2.1.8896 OTU 1 seq prokMSA_id:86422 AY222301.1 silica sinter depositing geothermal power station discharge drain clone ST01-SN4A proteobacterium 2.43.5.15.2.1.8918 OTU 1 seq prokMSA_id:71972 X92133.1 Lake Elmenteita isolate 45E3 2.43.5.15.2.1.8995 OTU 1 seq prokMSA_id:53457 AF139996.1 Pseudomonas sp. str. ML-120 2.43.5.15.2.1.9002 OTU 5 seqs prokMSA_id:29570 AJ316017.1 Paederus melanurus endosymbiont prokMSA_id:30919 AJ316019.1 Paederidus ruficollis endosymbiont prokMSA_id:34658 AJ316018.1 Paederus riparius endosymbiont prokMSA_id:37950 AJ295331.1 Paederus sabaeus endosymbiont prokMSA_id:46183 AJ316016.1 Paederus fuscipes endosymbiont 2.43.5.15.2.1.9005 OTU 1 seq prokMSA_id:66199 AJ278108.1 Pseudomonas sp. str. KY 2.43.5.15.2.1.9028 OTU 7 seqs prokMSA_id:8642 AJ002813.1 Pseudomonas sp. S2 prokMSA_id:36542 AF205136.1 Pseudomonas sp. 'FSL D1-045' str. FSL D1-045 'FSL prokMSA_id:52524 AF205135.1 Pseudomonas sp. 'FSL D1-024' str. FSL D1-024 'FSL prokMSA_id:60331 AF534209.1 soil clone Phe13 prokMSA_id:60343 AF534197.1 soil clone Glu3 prokMSA_id:76514 AY162141.1 Pseudomonas sp. str. BHP7-11 prokMSA_id:79231 AF468452.1 Pseudomonas koreensis str. Ps 9-14 2.43.5.15.2.1.9037 OTU 2 seqs prokMSA_id:25543 AF332355.1 biostimulation process clone T12-4 prokMSA_id:66758 AF118398.2 Pseudomonas sp. str. AST1 2.43.5.15.2.1.9041 OTU 1 seq prokMSA_id:77535 AY150578.1 gill Lyrodus pedicellatus clone LP3 2.43.5.15.2.1.9049 OTU 1 seq prokMSA_id:32552 AJ296559.1 uranium mining mill tailing clone GR-Sh2-34 GR-Sh2-34 2.43.5.15.2.1.9050 OTU 1 seq prokMSA_id:53970 AF139998.1 Pseudomonas sp. str. ML-124 2.43.5.15.2.1.9056 OTU 25 seqs prokMSA_id:8431 U37338.1 Pseudomonas sp. prokMSA_id:8440 AF137358.1 Pseudomonas aeruginosa prokMSA_id:8451 AB015564.1 deep-sea sediment clone BD5-7 prokMSA_id:21740 AB037549.1 Pseudomonas aeruginosa str. #777 prokMSA_id:24949 AB037545.1 Pseudomonas aeruginosa str. ATCC 27853 prokMSA_id:36294 AF323607.1 Pseudomonas aeruginosa str. DL1 prokMSA_id:41268 AB037556.1 Pseudomonas aeruginosa str. #985 prokMSA_id:47079 AB037546.1 Pseudomonas aeruginosa str. #47 prokMSA_id:49042 AJ414029.1 anaerobic mixed chemostat dehalogenating 246-trichlorophenol clone prokMSA_id:52395 AB037550.1 Pseudomonas aeruginosa str. #780 prokMSA_id:59706 AB091760.1 Pseudomonas aeruginosa AT2 prokMSA_id:64390 AY120881.1 Pseudomonas sp. str. Gu5828 prokMSA_id:72949 AF094714.1 Pseudomonas aeruginosa str. ATCC 4207 prokMSA_id:85661 AB108690.1 Pseudomonas aeruginosa str. AN1 prokMSA_id:85816 AY264292.1 Pseudomonas aeruginosa prokMSA_id:88574 AY268175.1 Pseudomonas aeruginosa str. ATCC 27853 prokMSA_id:98898 AY665977.1 Pseudomonas aeruginosa str. CF240604K prokMSA_id:99733 AY486359.1 Pseudomonas aeruginosa str. AU2696 prokMSA_id:103305 AY631058.1 Pseudomonas aeruginosa str. ATCC BAA-1006 prokMSA_id:104206 AY486365.1 Pseudomonas aeruginosa str. AU3712 prokMSA_id:104366 AY486366.1 Pseudomonas aeruginosa str. AU4567 prokMSA_id:104676 AY486368.1 Pseudomonas aeruginosa str. AU4699 prokMSA_id:107118 AY738263.1 Pseudomonas aeruginosa str. JB2 prokMSA_id:111640 AY905552.1 Pseudomonas aeruginosa str. USS25W prokMSA_id:113325 AY914070.1 Pseudomonas sp. R-2 2.43.5.15.2.1.9068 OTU 1 seq prokMSA_id:8477 AF143245.1 Pseudomonas stutzeri str. A1501 2.43.5.15.2.1.9074 OTU 1 seq prokMSA_id:43286 X92134.1 Lake Nakuru isolate 52N3 2.43.5.15.2.1.9172 OTU 7 seqs prokMSA_id:41050 AB041885.1 Pseudomonas psychrophila str. E-3 prokMSA_id:73611 AF205134.1 Pseudomonas sp. 'FSL D1-022' str. FSL D1-022 'FSL prokMSA_id:81514 AY195842.1 Pseudomonas fragi str. SAPA2 prokMSA_id:82986 AY263480.1 Pseudomonas sp. WR7#2 prokMSA_id:89274 AJ576247.1 Pseudomonas syringae Lz4W prokMSA_id:100308 AY486375.1 Pseudomonas sp. str. AU2390 prokMSA_id:108449 AY450557.1 Pseudomonas putida str. Q 2.43.5.15.2.1.9175 OTU 10 seqs prokMSA_id:8720 D84028.1 Pseudomonas tolaasii prokMSA_id:8721 AB013254.1 deep-sea sediment clone NKB2 prokMSA_id:8769 U85868.1 Pseudomonas sp. str. ACAM213 prokMSA_id:8770 U85869.1 Pseudomonas sp. str. IC038 prokMSA_id:33806 AF320994.1 Pseudomonas tolaasii str. NZ027 prokMSA_id:35009 AF320995.1 Pseudomonas tolaasii str. NZ032 prokMSA_id:52734 AF405328.1 Pseudomonas extremorientalis str. KMM3447 prokMSA_id:79709 AF468391.1 Arctic sea ice ARK10061 prokMSA_id:99574 AY259520.1 Pseudomonas sp. FB165 prokMSA_id:106672 AY625609.1 Pseudomonas sp. str. N3 2.43.5.15.2.1.9219 OTU 132 seqs prokMSA_id:8570 AB021381.1 Pseudomonas fuscovaginae str. MAFF 301177T prokMSA_id:8580 Z76667.1 Pseudomonas putida str. DSM 291T () prokMSA_id:8591 AF135269.1 Pseudomonas sp. str. SF1 prokMSA_id:8592 AJ002805.1 Pseudomonas sp. R1 prokMSA_id:8596 U70977.1 Pseudomonas putida str. MnB1 prokMSA_id:8603 AF072688.1 Pseudomonas mosselii str. CIP 105259 prokMSA_id:8609 Z76661.1 Pseudomonas ficuserectae str. LMG 5694T () prokMSA_id:8633 Z76671.1 Pseudomonas viridiflava str. LMG 2352T () prokMSA_id:8647 AB021378.1 Pseudomonas ficuserectae str. JCM 2400T prokMSA_id:8657 Z76657.1 Pseudomonas chlororaphis str. LMG 5004T () prokMSA_id:8659 Z76660.1 Pseudomonas coronafaciens str. LMG 13190T () prokMSA_id:8708 U85870.1 Pseudomonas sp. str. A177 prokMSA_id:8736 Z76662.1 Pseudomonas fluorescens str. DSM 50090T () prokMSA_id:8754 X99676.2 Pseudomonas sp. Y1000 prokMSA_id:8771 AF170731.1 Pseudomonas sp. str. QSSC1-9 prokMSA_id:8784 Z76652.1 Pseudomonas agarici str. LMG 2112T () prokMSA_id:8786 D84005.1 Pseudomonas agarici prokMSA_id:8787 Y11150.1 Pseudomonas graminis str. DSM 11363 () prokMSA_id:19059 AF251336.1 Pseudomonas sp. str. SV16 prokMSA_id:21401 AJ308311.1 Pseudomonas putida str. Biotype ICMP 13629; ATCC 17392 prokMSA_id:21746 AF326383.1 Pseudomonas sp. str. ADP prokMSA_id:21815 AF320991.1 Pseudomonas gingeri str. NCPPB 3147 prokMSA_id:21829 AY030316.1 Pseudomonas graminis str. JPL-8 prokMSA_id:25113 AF094739.1 Pseudomonas putida str. ATCC 17485 prokMSA_id:26064 AY014812.1 Pseudomonas sp. str. NZ059 prokMSA_id:27902 AY040872.1 Pseudomonas sp. str. WBC-3 prokMSA_id:29172 AF094746.1 Pseudomonas putida str. ATCC 17453 prokMSA_id:29593 AF181576.1 Pseudomonas cf. monteilii 9 prokMSA_id:29844 AF094741.1 Pseudomonas putida str. ATCC 17514 prokMSA_id:30129 AJ308313.1 Pseudomonas putida str. Biotype ICMP 2758; ATCC 12633; NCIB 9494 prokMSA_id:30528 AY014810.1 Pseudomonas sp. str. NZ047 prokMSA_id:33137 AF094740.1 Pseudomonas putida str. ATCC 17494 prokMSA_id:33976 AF447394.1 Pseudomonas putida str. DLL-E4 prokMSA_id:34665 AF290491.1 cf. Pseudomonas sp. clone Welshpool 59 prokMSA_id:37815 AF332511.1 Pseudomonas gingeri str. NCPPB 3146 prokMSA_id:38466 AF378011.1 Pseudomonas sp. str. ML2 prokMSA_id:41791 AF226713.1 Pseudomonas putida str. NCIMB 11286T prokMSA_id:42527 AF394175.1 simulated blackwater bioreactor isolate str. BW32 bacterium prokMSA_id:43780 AF251334.1 Pseudomonas sp. str. SV4 prokMSA_id:46435 AB051701.1 Pseudomonas sp. str. LAB-27 prokMSA_id:48399 AJ295644.1 uranium mill tailing clone KF/GS-Gitt2-41 prokMSA_id:51733 AJ308298.1 Pseudomonas agarici ICMP 2656 prokMSA_id:53552 AF094745.1 Pseudomonas putida str. ATCC 11172 prokMSA_id:56604 AF364097.1 Pseudomonas viridiflava str. NZCX09 prokMSA_id:59723 AF538932.1 Pseudomonas sp. str. WDL5 prokMSA_id:60438 AY131223.1 Pseudomonas sp. str. Fa4 prokMSA_id:60439 AY131224.1 Pseudomonas sp. str. Fa20 prokMSA_id:64655 AF467303.1 Pseudomonas sp. clone burs_26 prokMSA_id:65390 AF511514.1 Pseudomonas graminis HhSaOsb prokMSA_id:65395 AF511509.1 Pseudomonas sp. SaU6sm prokMSA_id:65396 AF511510.1 Pseudomonas sp. SaU7 prokMSA_id:65399 AF511508.1 Pseudomonas sp. SaO3 prokMSA_id:65400 AF511433.1 Pseudomonas fluorescens CCCO8 prokMSA_id:66755 AF501877.1 Pseudomonas sp. str. SMCC B0608 prokMSA_id:66814 AF430123.1 Pseudomonas sp. str. dcm5B prokMSA_id:67339 AY089990.1 Pseudomonas sp. str. HhSoUsc prokMSA_id:67416 AY091527.1 Pseudomonas palleroniana str. CFBP 4389 prokMSA_id:70197 AJ308301.1 Pseudomonas chlororaphis ICMP 13613; ATCC 9446 prokMSA_id:71222 AY014816.1 Pseudomonas sp. str. NZ092 prokMSA_id:72079 AJ308316.1 Pseudomonas syringae ICMP 3023; ATCC 19310 prokMSA_id:72969 AJ271219.1 Pseudomonas putida str. P1 prokMSA_id:73091 AF094736.1 Pseudomonas putida str. ATCC 12633 prokMSA_id:73648 AY014809.1 Pseudomonas sp. str. NZ043 prokMSA_id:74050 AF511436.1 Pseudomonas alcaligenes CCCO12 prokMSA_id:74089 AJ249825.2 Pseudomonas putida str. GPo1 (TF4-1L) prokMSA_id:74199 AF094744.1 Pseudomonas putida str. ATCC 17642 prokMSA_id:75144 AE016776.1 Pseudomonas putida str. KT2440 prokMSA_id:75350 AE016778.1 Pseudomonas putida str. KT2440 prokMSA_id:75962 AY162140.1 Pseudomonas sp. str. STB17 prokMSA_id:76313 AE016775.1 Pseudomonas putida str. KT2440 prokMSA_id:76537 AY118112.1 Pseudomonas sp. str. BW11M1 prokMSA_id:76538 AE016791.1 Pseudomonas putida str. KT2440 prokMSA_id:77022 AE016774.1 Pseudomonas putida str. KT2440 prokMSA_id:78525 AY180968.1 Pseudomonas viridiflava str. LPPA 144 prokMSA_id:78571 AY152673.1 Pseudomonas rhizosphaerae str. IH5 prokMSA_id:78774 AY180967.1 Pseudomonas viridiflava str. LPPA 139 prokMSA_id:78852 AY180972.1 Pseudomonas viridiflava str. CECT 458 prokMSA_id:78951 AY180971.1 Pseudomonas viridiflava str. LPPA 84 prokMSA_id:84327 AB109777.1 Pseudomonas putida str. KF703 prokMSA_id:84758 AY263483.1 Pseudomonas sp. 4/11SKenr22# prokMSA_id:85824 AB109013.1 str. Pseudomonas putida NA3 prokMSA_id:86435 AB109776.1 Pseudomonas putida str. KF715 prokMSA_id:89243 AY324319.1 Pseudomonas sp. str. KL28 prokMSA_id:89310 AY327816.1 Pseudomonas sp. str. KR9 prokMSA_id:91631 AF532866.1 Pseudomonas sp. str. K2 prokMSA_id:91834 AY259924.1 Pseudomonas filiscindens str. ATCC BAA-697 prokMSA_id:92897 AY344806.1 Pseudomonas sp. str. WSCIII prokMSA_id:93278 AJ551146.1 Pseudomonas sp. An7 prokMSA_id:93773 AY364537.1 Pseudomonas lutea str. OK2 prokMSA_id:98066 AY395005.1 Pseudomonas putida NAB1 prokMSA_id:99253 AY180969.1 Pseudomonas viridiflava str. LPPA 264 prokMSA_id:99308 AY491973.1 Pseudomonas putida str. 1290 prokMSA_id:100004 AY647158.1 Pseudomonas putida str. ZWL73; CCTCC (China Center Type Collection) M203021 prokMSA_id:100076 AY689034.1 Pseudomonas sp. str. 3C_7 prokMSA_id:100571 AY456712.1 Pseudomonas sp. str. SBW25 prokMSA_id:101385 AF456228.1 Pseudomonas sp. str. 30c stunt cotton roots prokMSA_id:102214 AY604840.1 Pseudomonas viridiflava str. DUB1.3a prokMSA_id:102254 AJ846281.1 Pseudomonas sp. HHS16 prokMSA_id:102312 AY242068.1 Pseudomonas pv. syringae str. FG11 prokMSA_id:102355 AY604841.1 Pseudomonas viridiflava str. ME249.1a prokMSA_id:102491 AY574907.1 Pseudomonas viridiflava str. KNOX3.4a prokMSA_id:102518 AY604842.1 Pseudomonas viridiflava str. RM225.1b prokMSA_id:102554 AY622320.1 Pseudomonas putida str. AS90 prokMSA_id:102646 AY574908.1 Pseudomonas viridiflava str. LP23.1a prokMSA_id:102673 AY604843.1 Pseudomonas viridiflava str. RMX205.1a prokMSA_id:102802 AY574909.1 Pseudomonas viridiflava str. ME3.1b prokMSA_id:102828 AY604844.1 Pseudomonas viridiflava str. RT220.1a prokMSA_id:102972 AY604845.1 Pseudomonas viridiflava str. RM207.1a prokMSA_id:103023 AY180970.1 Pseudomonas viridiflava str. LPPA 265 prokMSA_id:103122 AY604846.1 Pseudomonas viridiflava str. RT228.1b prokMSA_id:103255 AY689079.1 Pseudomonas sp. str. 12B_3 prokMSA_id:103270 AY604847.1 Pseudomonas viridiflava str. KNOX209.1b prokMSA_id:103419 AY604848.1 Pseudomonas viridiflava str. KNOX249.1b prokMSA_id:103845 AB180241.1 Pseudomonas sp. str. BS prokMSA_id:104652 AY536741.1 Pseudomonas sp. str. pseudomonas sp TS1138 prokMSA_id:104718 AY259518.1 Pseudomonas sp. FB8 prokMSA_id:104753 AB110608.1 Pseudomonas putida str. KF751 prokMSA_id:105067 AY456706.1 Pseudomonas putida str. P3 prokMSA_id:106407 AY574910.1 Pseudomonas viridiflava str. PNA3.3a prokMSA_id:106556 AB187022.1 Suiyo seamount hydrothermal vent water 0.2micro-m filterable fraction clone SSM-EB24 prokMSA_id:106568 AY574911.1 Pseudomonas viridiflava str. RMX3.1b prokMSA_id:106725 AY574912.1 Pseudomonas viridiflava str. RMX23.1a prokMSA_id:106729 AY444988.1 biofilm on oxygen-transfer membrane clone L7 prokMSA_id:106759 AJ785569.1 Pseudomonas sp. Wt/3 prokMSA_id:106867 AY699594.1 soil contaminated with polyaromatic hydrocarbons clone NAP2d7 prokMSA_id:107047 AY689081.1 Pseudomonas sp. str. 12C_4 prokMSA_id:108403 AY785244.1 Pseudomonas putida str. CR7 prokMSA_id:108407 AY785253.1 microbial fuel cell anode clone 15 prokMSA_id:108615 AY745835.1 Pseudomonas sp. str. NPO-JL-67 prokMSA_id:108914 AB193952.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-captured fraction clone SSM264-EB03 prokMSA_id:111961 AY866406.1 Pseudomonas putida str. OS-19 prokMSA_id:112786 AY919300.1 Pseudomonas viridiflava str. UASWS0038 2.43.5.15.2.1.9221 OTU 71 seqs prokMSA_id:8672 AF064460.1 Pseudomonas veronii str. CIP 104663 prokMSA_id:8678 AF195875.1 Pseudomonas sp. str. A2 prokMSA_id:8679 AF195876.1 Pseudomonas sp. str. KA2 prokMSA_id:8686 D86002.1 Pseudomonas fluorescens str. DSM 50108 prokMSA_id:8687 D86003.1 Pseudomonas fluorescens str. NCIMB 9815 prokMSA_id:8688 AF064457.1 Pseudomonas orientalis str. CFML 96-170 prokMSA_id:8689 AF064461.1 Pseudomonas cedrina str. CFML 96-198 prokMSA_id:8695 AF195777.1 Pseudomonas sp. str. H1 prokMSA_id:8698 AF042858.1 Pseudomonas sp. 'Shk 1' str. Shk 1 prokMSA_id:8699 AF184918.1 Pseudomonas sp. DSM 12877 str. PS+ DSM12877 DSM prokMSA_id:8703 AB015581.1 deep-sea sediment clone BD7-5 prokMSA_id:8704 AB013843.1 Pseudomonas sp. 10-12.H prokMSA_id:8705 AB013844.1 Pseudomonas sp. 4-5.l prokMSA_id:8706 AB013845.1 Pseudomonas sp. 6-13.J prokMSA_id:8707 AF064459.1 Pseudomonas rhodesiae str. CIP 104664 prokMSA_id:8709 AJ002801.1 Pseudomonas sp. 150 prokMSA_id:8711 AF177918.1 Pseudomonas sp. str. IpA-92 prokMSA_id:8727 AB015570.1 deep-sea sediment clone BD5-14 prokMSA_id:8729 AB013828.1 Pseudomonas sp. 9.j prokMSA_id:8730 AB015251.1 deepest cold-seep area Japan Trench clone JTB247 proteobacterium prokMSA_id:8765 AF074384.1 Pseudomonas gessardii str. CIP 105469 prokMSA_id:8773 AB015555.1 deep-sea sediment clone BD3-15 prokMSA_id:8775 D84025.1 Pseudomonas synxantha prokMSA_id:8778 AF057645.1 Pseudomonas libanensis str. CIP 105460 prokMSA_id:16465 AJ308305.1 Pseudomonas fluorescens str. Biotype C ICMP 13624; ATCC 17559 prokMSA_id:16810 AF336349.1 Pseudomonas fluorescens str. Wuba22 prokMSA_id:17216 AF289503.1 cf. Pseudomonas sp. clone Llangefni 3 prokMSA_id:18648 AF290479.1 cf. Pseudomonas sp. clone Llangefni 15 prokMSA_id:19517 AF290488.1 cf. Pseudomonas sp. clone Welshpool 1 prokMSA_id:19794 AJ295374.1 rape rhizosphere cse074 prokMSA_id:22349 AF268029.1 Pseudomonas grimontii str. CFML 97-514T prokMSA_id:23585 AJ419675.1 Pseudomonas sp. str. 5N1-1 prokMSA_id:24702 AJ308304.1 Pseudomonas fluorescens str. Biotype B ICMP 13619; ATCC 17428 prokMSA_id:25298 AF290493.1 cf. Pseudomonas sp. clone Welshpool 49 prokMSA_id:26170 AY014806.1 Pseudomonas sp. str. NZ024 prokMSA_id:26453 AF157486.1 iron-reducing activated sludge isolate str. JLN-2 JLN-2 prokMSA_id:27133 AF228366.1 Pseudomonas fluorescens bv. G str. PC18 prokMSA_id:29971 AJ417370.1 Pseudomonas sp. str. Circle prokMSA_id:32498 AF205133.1 Pseudomonas sp. 'FSL D1-015' str. FSL D1-015 'FSL prokMSA_id:32516 AF321239.1 Pseudomonas sp. PM-2001 prokMSA_id:32794 AY014801.1 Pseudomonas sp. str. NZ007 prokMSA_id:32814 AJ295653.1 uranium mining waste pile clone KF/GS-JG36-13 KF/GS-JG36-13 prokMSA_id:34487 AF290489.1 cf. Pseudomonas sp. clone Welshpool 13 prokMSA_id:37559 AF290490.1 cf. Pseudomonas sp. clone Welshpool 46 prokMSA_id:41990 AF228367.1 Pseudomonas fluorescens bv. C str. PC24 prokMSA_id:43407 AF380370.1 Pseudomonas sp. CM10-2 prokMSA_id:44427 AF268968.1 Pseudomonas brenneri str. CFML 97-391T prokMSA_id:44550 AF289505.1 cf. Pseudomonas sp. clone Llangefni 6 prokMSA_id:47203 AF094732.1 Pseudomonas fluorescens str. ATCC 49642 prokMSA_id:48560 AB056120.1 Pseudomonas veronii str. INA06 prokMSA_id:50036 AJ252664.1 Agricultural soil SC-I-88 () clone SC-I-88 bacterium prokMSA_id:50165 AF336352.1 Pseudomonas fluorescens str. Wuba30 prokMSA_id:50895 AY014804.1 Pseudomonas sp. str. NZ014 prokMSA_id:51863 AF380369.1 Pseudomonas sp. CM10-1 prokMSA_id:59301 AF539745.1 Pseudomonas veronii str. UFZ-B549 prokMSA_id:60445 AY131218.1 Pseudomonas sp. str. Fa8 prokMSA_id:62875 AJ496564.1 Pseudomonas rhodesiae PF1 prokMSA_id:63912 AJ492830.1 Pseudomonas fulgida str. DSM 14938 = LMG 21467 P 515/12 prokMSA_id:66023 AY043360.1 Pseudomonas rhodesiae str. KK1 prokMSA_id:68456 AF459797.1 Tetraponera binghami symbiont prokMSA_id:68653 AY081990.1 atrazine-catabolizing microbial absence methanol clone KRA30-19 prokMSA_id:69848 AF094731.1 Pseudomonas fluorescens str. ATCC 17574 prokMSA_id:72334 AY093461.1 deep marine sediment clone MB-A2-106 prokMSA_id:74186 AF094727.1 Pseudomonas fluorescens str. ATCC 17397 prokMSA_id:75129 AY167969.1 manure prokMSA_id:77564 AF456222.1 Pseudomonas sp. str. 10569 FPTPN genomospecies 3 10569 prokMSA_id:79157 AJ537601.1 Pseudomonas antarctica str. CMS 35 prokMSA_id:79186 AJ537603.1 Pseudomonas proteolytica str. CMS 64 prokMSA_id:79601 AJ537602.1 Pseudomonas meridiana str. CMS 38 prokMSA_id:81815 AY179328.1 Pseudomonas veronii str. S3 prokMSA_id:84113 AJ440983.1 lake microbial mat isolate str. R-7616 2.43.5.15.2.1.9228 OTU 1 seq prokMSA_id:76785 AJ297767.1 Pseudomonas stutzeri HY-105 2.43.5.15.2.1.9238 OTU 32 seqs prokMSA_id:8516 AJ006109.1 Pseudomonas mendocina str. ATCC 25413 prokMSA_id:8520 Z76666.1 Pseudomonas pseudoalcaligenes str. LMG 1225T () prokMSA_id:8526 AF140009.1 Pseudomonas pseudoalcaligenes str. ML-A02 prokMSA_id:8528 AF139995.1 Pseudomonas pseudoalcaligenes str. ML-052 prokMSA_id:8530 AB010850.1 strain HTB147 clone HTB147 prokMSA_id:8534 AB010851.1 strain HTB110 clone HTB110 prokMSA_id:8535 AB010852.1 strain HTB139 clone HTB139 prokMSA_id:8536 AB010853.1 strain HTB095 clone HTB095 prokMSA_id:8543 AJ007004.1 Pseudomonas sp. LE1 prokMSA_id:22044 AF286035.1 mercury and PCB contaminated saltmarsh sediment clone LCP-79 LCP-79 prokMSA_id:26691 AF232713.1 Pseudomonas mendocina str. PC1 prokMSA_id:32340 AF150711.1 Elbe River snow isolate Iso6 Iso6_1432 prokMSA_id:33037 AB030583.1 Pseudomonas alcaliphila str. AL15-21 prokMSA_id:34621 AF326375.1 Pseudomonas sp. str. GP11 prokMSA_id:44974 AF336311.1 Pseudomonas sp. str. SMCC D0715 prokMSA_id:56329 AF500620.1 Pseudomonas sp. str. SMCC B0310 prokMSA_id:57400 AB096260.1 Pseudomonas sp. str. K50 prokMSA_id:66615 AF500280.1 Pseudomonas sp. str. SMCC B0252 prokMSA_id:66616 AF500282.1 Pseudomonas sp. str. SMCC B0280 prokMSA_id:66618 AF500281.1 Pseudomonas sp. str. SMCC B0259 prokMSA_id:66619 AF500279.1 Pseudomonas sp. str. SMCC B0251 prokMSA_id:66623 AF500277.1 Pseudomonas sp. str. SMCC B0205 prokMSA_id:66759 AF500619.1 Pseudomonas sp. str. SMCC B0307 prokMSA_id:67521 AF494091.1 Pseudomonas nitroreducens str. 0802 prokMSA_id:67862 AY082368.1 hot spring clone DGG18 prokMSA_id:70216 AF238494.1 Pseudomonas pseudoalcaligenes prokMSA_id:73478 AF181570.1 Pseudomonas cf. pseudoalcaligenes 3 prokMSA_id:73717 Z76675.1 Pseudomonas pseudoalcaligenes str. DSM 50018T () prokMSA_id:73739 AF094735.1 Pseudomonas oleovorans str. ATCC 8062 prokMSA_id:79844 AY188940.1 Pseudomonas sp. str. P_wp0231 prokMSA_id:83866 AJ550466.1 Pseudomonas alcaliphila prokMSA_id:88854 AY221605.1 metal and hydrocarbon contaminated soil clone HN4-26 2.43.5.15.2.1.9240 OTU 13 seqs prokMSA_id:23945 AJ417071.1 Pseudomonas sp. str. PGNR1 prokMSA_id:29949 AJ278812.1 Pseudomonas fluorescens str. CHA0 prokMSA_id:31990 AY014820.1 Pseudomonas sp. str. NZ102 prokMSA_id:40472 AY014819.1 Pseudomonas sp. str. NZ101 prokMSA_id:44937 AY014818.1 Pseudomonas sp. str. NZ097 prokMSA_id:51887 AJ417073.1 Pseudomonas sp. str. PF prokMSA_id:58732 AF521651.1 Pseudomonas sp. str. 7-1 prokMSA_id:66228 AF509334.1 Pseudomonas sp. str. HS21 prokMSA_id:71021 AF094726.1 Pseudomonas fluorescens str. ATCC 17386 prokMSA_id:81594 AY196702.1 Pseudomonas fluorescens str. MM-B16 prokMSA_id:99655 AY447046.1 Pseudomonas fluorescens str. CPF-10 prokMSA_id:102200 AY689072.1 Pseudomonas sp. str. 9C_19 prokMSA_id:102339 AY689073.1 Pseudomonas sp. str. 9C_20 2.43.5.15.2.1.9243 OTU 1 seq prokMSA_id:8717 Z76670.1 Pseudomonas tolaasii str. LMG 2342T () 2.43.5.15.2.1.9267 OTU 5 seqs prokMSA_id:31850 AB001450.1 Pseudomonas syringae pv. theae str. PT1 prokMSA_id:41675 AF326379.1 Pseudomonas syringae prokMSA_id:47854 AB001439.1 Pseudomonas syringae pv. actinidiae str. Kw-11 pv. prokMSA_id:50673 AB001444.1 Pseudomonas syringae pv. maculicola str. MAFF 302264 pv. prokMSA_id:50962 AB001445.1 Pseudomonas syringae pv. morsprunorum str. MAFF 302280 pv. 2.43.5.15.2.1.9272 OTU 1 seq prokMSA_id:38752 AB052965.1 Pseudomonas sp. ND137 2.43.5.15.2.1.9280 OTU 1 seq prokMSA_id:8488 L37366.1 Pseudomonas mendocina 2.43.5.15.2.1.9295 OTU 11 seqs prokMSA_id:8471 D84014.1 Pseudomonas fragi prokMSA_id:8476 U26262.1 Pseudomonas stutzeri prokMSA_id:8489 U26414.1 Pseudomonas stutzeri prokMSA_id:8496 U25432.1 Pseudomonas stutzeri prokMSA_id:19945 AF214645.1 Nitrogen-fixing isolate str. MIS prokMSA_id:41253 AF284764.1 Pseudomonas stutzeri str. phen8 prokMSA_id:48469 AF094748.1 Pseudomonas stutzeri str. ATCC 17588 prokMSA_id:64654 AF467304.1 Pseudomonas sp. clone 349_11 prokMSA_id:91116 AY345461.1 Lake Kauhako water isolate str. K65 prokMSA_id:91395 AY345431.1 Lake Kauhako water isolate str. K2-20 prokMSA_id:104761 AY654828.1 Oculina mucus isolate 10 2.43.5.15.2.1.9297 OTU 1 seq prokMSA_id:48401 AJ308319.1 Azotobacter beijerinckii ICMP 8673; ATCC 19360 2.43.5.15.2.1.9300 OTU 1 seq prokMSA_id:77433 AY150183.1 Lyrodus pedicellatus symbiont 2.43.5.15.2.1.9310 OTU 1 seq prokMSA_id:75209 AJ519791.1 Pseudomonas sp. str. AC-167 2.43.5.15.2.1.9343 OTU 4 seqs prokMSA_id:26354 AF448515.1 Cellvibrio subsp. mixtus str. ACM 2601 prokMSA_id:48811 AJ289160.1 Cellvibrio subsp. mixtus str. ACM 2603 prokMSA_id:108067 AJ786790.1 Cellvibrio sp. R-20949 prokMSA_id:108071 AJ786793.1 Cellvibrio sp. R-20952 2.43.5.15.2.1.9366 OTU 6 seqs prokMSA_id:8673 AB021318.1 Pseudomonas sp. str. MBIC3963 Ms-1 prokMSA_id:29705 AJ293826.1 Arctic seawater isolate str. R7366 prokMSA_id:68916 AJ293825.1 Antarctic seawater isolate str. R7375 prokMSA_id:73068 AJ293824.1 Arctic seawater isolate str. R7078 prokMSA_id:79706 AF468397.1 Arctic sea ice ARK10142 prokMSA_id:100997 AY573032.1 Pseudomonas sp. str. ARCTIC-P23 2.43.5.15.2.1.9389 OTU 1 seq prokMSA_id:8413 D84018.1 Pseudomonas oleovorans 2.43.5.15.2.1.9422 OTU 1 seq prokMSA_id:30985 AJ289164.1 Cellvibrio fibrivorans str. R-4079 2.43.5.15.2.1.9424 OTU 2 seqs prokMSA_id:71406 AF326380.1 Pseudomonas sp. str. PCP2 prokMSA_id:103258 AY693817.1 anaerobic sludge clone EUB19-2 2.43.5.15.2.1.9469 OTU 1 seq prokMSA_id:37108 AF290486.1 cf. Pseudomonas sp. clone Llangefni 52 2.43.5.15.2.1.9493 OTU 1 seq prokMSA_id:66813 AF430125.1 Pseudomonas sp. str. dcm7B 2.43.5.15.2.1.9500 OTU 1 seq prokMSA_id:30992 AF448513.1 Cellvibrio vulgaris str. NCIMB 8633 2.43.5.15.2.1.9520 OTU 2 seqs prokMSA_id:8566 D84002.1 Chryseomonas luteola prokMSA_id:25281 AF386741.1 Pseudomonas sp. str. 13BT 2.43.5.15.2.1.9548 OTU 1 seq prokMSA_id:45454 AJ232854.1 rhizosphere soil Lolium perenne clone LRS6 2.43.5.15.2.1.9553 OTU 1 seq prokMSA_id:52677 AJ289161.1 Cellvibrio sp. str. R-4001 2.43.5.15.2.1.9561 OTU 1 seq prokMSA_id:30870 AJ308318.1 Azorhizophilus paspali ICMP 7469; ATCC 23833 2.43.5.15.2.1.9588 OTU 1 seq prokMSA_id:61102 AF530072.1 Pseudomonas citronellolis str. TERIDB18 2.43.5.15.2.1.9599 OTU 1 seq prokMSA_id:8561 AB021419.1 Pseudomonas denitrificans str. IAM 12023 2.43.5.15.2.1.9613 OTU 2 seqs prokMSA_id:8562 U01916.1 Pseudomonas flavescens prokMSA_id:52398 AJ308320.1 Pseudomonas flavescens ICMP 13539; ATCC 51555 2.43.5.16 SAR86 30 seqs 2.43.5.16.1 Unclassified 30 seqs 2.43.5.16.1.1 sf_1 30 seqs 2.43.5.16.1.1.8962 OTU 1 seq prokMSA_id:60646 AF406526.1 bacterioplankton clone AEGEAN_234 2.43.5.16.1.1.9020 OTU 1 seq prokMSA_id:50734 AJ400356.1 f cytometric sorted marine sample subpopulation 3 clone ZD0433 bacterium 2.43.5.16.1.1.9296 OTU 1 seq prokMSA_id:72648 AJ240911.1 5' clone CHAB-I-7 2.43.5.16.1.1.9620 OTU 10 seqs prokMSA_id:8643 AF001651.1 marine clone OCS5 prokMSA_id:19508 AJ400344.1 marine clone ZD0107 prokMSA_id:33605 AF241654.1 North Sea clone prokMSA_id:40069 AF354613.1 marine clone Arctic97A-18 prokMSA_id:45850 AF173975.1 OCS5 clone KTc1107 prokMSA_id:53597 AY033328.1 marine bacterioplankton clone MB12G02 prokMSA_id:54017 AF268217.2 marine bacterioplankton clone EBAC27GO5 prokMSA_id:69857 AJ240912.1 marine clone CHAB-III-1 prokMSA_id:102716 AACY01004374.1 Sargasso Sea prokMSA_id:104239 AF241653.1 North Sea clone 2.43.5.16.1.1.9648 OTU 17 seqs prokMSA_id:8177 AF001650.1 related to SAR86 clone OCS44 prokMSA_id:8790 U70693.1 marine clone OM10 prokMSA_id:18452 Z88589.2 HRV33 prokMSA_id:18789 AF245642.1 algal bloom clone NAC11-19 prokMSA_id:21417 AY033304.1 marine bacterioplankton clone MB11E02 prokMSA_id:22651 AF245636.1 clone NAC11-11 prokMSA_id:54612 AY033314.1 marine bacterioplankton clone MB12D03 prokMSA_id:54824 AY033326.1 marine bacterioplankton clone MB11B08 prokMSA_id:54972 AY033311.1 marine bacterioplankton clone MB11G09 prokMSA_id:55020 AY033317.1 marine bacterioplankton clone MB12G11 prokMSA_id:60645 AF406528.1 bacterioplankton clone AEGEAN_146 prokMSA_id:72166 AF406534.1 bacterioplankton clone AEGEAN_209 prokMSA_id:92279 AY354844.1 coastal seawater during phytoplankton bloom clone PLY-P1-108 prokMSA_id:101111 AF279106.2 marine clone BAC EBAC31A08 prokMSA_id:101353 AACY01004582.1 Sargasso Sea prokMSA_id:101924 AACY01084895.1 Sargasso Sea prokMSA_id:104734 AF173974.1 OCS44 clone KTc0917 2.43.5.17 Shewanella 7 seqs 2.43.5.17.1 Unclassified 7 seqs 2.43.5.17.1.1 sf_1 7 seqs 2.43.5.17.1.1.9344 OTU 7 seqs prokMSA_id:9063 U91544.1 Shewanella algae str. 14.80- flaminco prokMSA_id:9065 U91547.1 Shewanella algae str. T# 8 prokMSA_id:9066 U91548.1 Shewanella algae str. 68872 prokMSA_id:46882 AF319767.1 Shewanella sp. A6.mk prokMSA_id:71500 AF513471.1 Alteromonadaceae isolate str. PH39 prokMSA_id:112788 AB205581.1 Shewanella algae str. Y01 prokMSA_id:113686 AB205579.1 Shewanella algae str. X012 2.43.5.18 SUP05 27 seqs 2.43.5.18.1 Unclassified 27 seqs 2.43.5.18.1.1 sf_1 27 seqs 2.43.5.18.1.1.8605 OTU 22 seqs prokMSA_id:7662 AF035722.1 Calyptogena sp. Florida gill symbiont prokMSA_id:7664 AF035724.1 Calyptogena phaseoliformis gill symbiont prokMSA_id:7669 AF035720.1 Calyptogena kilmeri gill symbiont prokMSA_id:7670 AF035726.1 Vesicomya gigas gill symbiont prokMSA_id:7671 L25708.1 Calyptogena species prokMSA_id:7672 AF035725.1 Ectenagena extenta gill symbiont prokMSA_id:7674 AF035721.1 Calyptogena magnifica gill symbiont prokMSA_id:7676 AF035719.1 Calyptogena elongata gill symbiont prokMSA_id:39558 AJ400348.1 f cytometric sorted marine sample subpopulation 3 clone ZD0405 bacterium prokMSA_id:67478 AB073122.1 Endosymbiont Bathymodiolus sp. clone BATH35 Bathymodiolus prokMSA_id:67479 AB073121.1 Endosymbiont Calyptogena laubieri clone CAL1213 Calyptogena prokMSA_id:79242 AF382104.1 bacterioplankton clone ZA2525c prokMSA_id:79277 AF382101.1 bacterioplankton clone ZA2329c prokMSA_id:79347 AF382103.1 bacterioplankton clone ZA2514c prokMSA_id:90283 AY310508.1 symbiont prokMSA_id:101386 AY235676.1 Bathymodiolus azoricus thioautotrophic gill symbiont prokMSA_id:101558 AY235677.1 Bathymodiolus puteoserpentis thioautotrophic gill symbiont prokMSA_id:104276 AJ441190.1 symbiont prokMSA_id:107054 AB186990.1 Suiyo seamount hydrothermal vent water 0.2micro-m filterable fraction clone SSM-NB02 prokMSA_id:107316 AB178222.1 Japan: Suiyo Seamount clone Suiyo-Bathy()-1 prokMSA_id:108891 AB193931.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-filterable fraction clone SSM264-NB06 prokMSA_id:110637 AJ745718.1 thiotrophic endosymbiont Bathymodiolus sp 2.43.5.18.1.1.8654 OTU 1 seq prokMSA_id:79550 AB099939.1 inactive deep-sea hydrothermal vent chimneys clone IheB2-31 2.43.5.18.1.1.8953 OTU 1 seq prokMSA_id:45202 AF354606.1 marine clone Arctic96BD-19 2.43.5.18.1.1.8965 OTU 1 seq prokMSA_id:7677 M99445.1 Bathymodiolus thermophilus gill symbiont 2.43.5.18.1.1.8966 OTU 1 seq prokMSA_id:21943 AB042413.1 Maorithyas hadalis gill thioautotrophic symbiont I gill 2.43.5.18.1.1.9474 OTU 1 seq prokMSA_id:41094 AB036709.1 Bathymodiolus septemdierum thioautotrophic gill symbiont thioautotrophic 2.43.5.19 Symbionts 31 seqs 2.43.5.19.1 Unclassified 31 seqs 2.43.5.19.1.1 sf_1 31 seqs 2.43.5.19.1.1.8183 OTU 1 seq prokMSA_id:7620 U77482.1 Escarpia spicata endosymbiont 2.43.5.19.1.1.8227 OTU 7 seqs prokMSA_id:7621 U77479.1 Lamellibrachia sp. endosymbiont prokMSA_id:7622 U77481.1 Lamellibrachia columna endosymbiont prokMSA_id:81388 AY129107.2 Escarpia laminata symbiont prokMSA_id:81446 AY129091.1 Lamellibrachia barhami symbiont prokMSA_id:81571 AY129113.2 Lamellibrachia barhami symbiont prokMSA_id:81637 AY129106.2 Escarpia laminata symbiont prokMSA_id:82463 AY129090.1 Lamellibrachia barhami symbiont 2.43.5.19.1.1.8275 OTU 1 seq prokMSA_id:7641 AF165907.1 undescribed vestimentiferan tubeworm symbiont 'Shinkai 2.43.5.19.1.1.8403 OTU 1 seq prokMSA_id:65374 AF432146.1 Selenate-reducing isolate str. KE4OH1 2.43.5.19.1.1.8833 OTU 1 seq prokMSA_id:7577 AF165909.1 Escarpia spicata endosymbiont 'Alvin #2837' Alvin #2837 endosymbiont 2.43.5.19.1.1.9022 OTU 1 seq prokMSA_id:7619 AF165908.1 Escarpia spicata endosymbiont 'Alvin #2839' Alvin #2839 endosymbiont 2.43.5.19.1.1.9090 OTU 1 seq prokMSA_id:7585 L25711.1 Anodontia phillipiana gill symbiont 2.43.5.19.1.1.9107 OTU 2 seqs prokMSA_id:7583 L25707.1 Lucina floridana gill symbiont prokMSA_id:7640 L25712.1 Codakia costata gill symbiont 2.43.5.19.1.1.9128 OTU 1 seq prokMSA_id:7617 X95229.1 Lucina nassula gill symbiont 2.43.5.19.1.1.9130 OTU 1 seq prokMSA_id:7598 X84979.1 Codakia orbicularis gill symbiont 2.43.5.19.1.1.9220 OTU 7 seqs prokMSA_id:81173 AY129108.1 Escarpia laminata symbiont prokMSA_id:81211 AY129112.1 unclassified Lamellibrachia sp. 1 symbiont Lamellibrachia prokMSA_id:81526 AY129093.1 Lamellibrachia barhami symbiont prokMSA_id:81727 AY129103.1 Lamellibrachia barhami symbiont prokMSA_id:81952 AY129102.1 Escarpia laminata symbiont prokMSA_id:82094 AY129109.1 Escarpia laminata symbiont prokMSA_id:82451 AY129094.1 Lamellibrachia barhami symbiont 2.43.5.19.1.1.9452 OTU 1 seq prokMSA_id:7586 AF170359.1 Dechloromarinus chlorophilus str. NSS 2.43.5.19.1.1.9556 OTU 6 seqs prokMSA_id:81502 AY129101.1 Seepiophila jonesi symbiont prokMSA_id:81773 AY129110.1 unclassified Lamellibrachia sp. 2 symbiont Lamellibrachia prokMSA_id:81896 AY129087.1 Seepiophila jonesi symbiont prokMSA_id:82009 AY129092.1 Seepiophila jonesi symbiont prokMSA_id:82064 AY129104.1 Seepiophila jonesi symbiont prokMSA_id:82292 AY129111.1 unclassified Lamellibrachia sp. 2 symbiont Lamellibrachia 2.43.5.2 acidophile isolate group 1 seq 2.43.5.2.1 Unclassified 1 seq 2.43.5.2.1.1 sf_1 1 seq 2.43.5.2.1.1.7909 OTU 1 seq prokMSA_id:44355 AF387301.1 iron-oxidizing acidophile isolate m-1 2.43.5.20 Thiotrichales 130 seqs 2.43.5.20.1 Francisellaceae 3 seqs 2.43.5.20.1.1 sf_1 3 seqs 2.43.5.20.1.1.8949 OTU 1 seq prokMSA_id:64552 AY102612.1 Caedibacter taeniospiralis 2.43.5.20.1.1.9180 OTU 1 seq prokMSA_id:7757 Z21931.1 Francisella tularensis 2.43.5.20.1.1.9554 OTU 1 seq prokMSA_id:26984 AF206675.1 Tilapia parasite TPT-541 2.43.5.20.2 Piscirickettsiaceae 62 seqs 2.43.5.20.2.1 sf_3 62 seqs 2.43.5.20.2.1.8452 OTU 1 seq prokMSA_id:7680 D86374.1 Hydrogenovibrio marinus str. JCM7688 MH-110 2.43.5.20.2.1.8498 OTU 1 seq prokMSA_id:7692 AF013971.1 Thiomicrospira sp. str. SL-1 2.43.5.20.2.1.8500 OTU 1 seq prokMSA_id:7695 AF013978.1 Thiomicrospira kuenenii str. JB-A1 2.43.5.20.2.1.8501 OTU 1 seq prokMSA_id:7696 AF013975.1 Thiomicrospira chilensis str. Ch-1 2.43.5.20.2.1.8595 OTU 1 seq prokMSA_id:81639 AB086228.1 sea water isolate str. DBF-MAK 2.43.5.20.2.1.8623 OTU 3 seqs prokMSA_id:7691 L40811.1 Thiomicrospira species prokMSA_id:7693 AF029040.1 Benzene mineralizing consortium complete clone SB-3 consortium prokMSA_id:99742 AB166731.1 Thiomicrospira thermophila str. I78 2.43.5.20.2.1.8638 OTU 1 seq prokMSA_id:24022 AB042414.1 Maorithyas hadalis gill thioautotrophic symbiont II gill 2.43.5.20.2.1.8644 OTU 2 seqs prokMSA_id:7719 X87339.1 Methylophaga thalassica prokMSA_id:7720 X95461.1 "Methylophaga sulfidovorans" 2.43.5.20.2.1.8664 OTU 2 seqs prokMSA_id:7698 AJ237758.1 Thiomicrospira sp. str. Milos-T2 prokMSA_id:7700 AF082328.1 Thiomicrospira sp. str. Milos T-2 2.43.5.20.2.1.8692 OTU 5 seqs prokMSA_id:7733 U36941.1 Piscirickettsia salmonis prokMSA_id:7734 U36915.1 Piscirickettsia salmonis prokMSA_id:7735 U36940.1 Piscirickettsia salmonis prokMSA_id:7736 U36942.1 Piscirickettsia salmonis prokMSA_id:71348 U55015.1 Piscirickettsia salmonis 2.43.5.20.2.1.8799 OTU 1 seq prokMSA_id:7706 L01478.1 Thiomicrospira thyasirae str. TG-2 2.43.5.20.2.1.8806 OTU 1 seq prokMSA_id:72885 AF013977.1 freshwater pond Duckstein near Gottingen Germany isolate str. DS-1 2.43.5.20.2.1.8845 OTU 2 seqs prokMSA_id:62494 AF513948.1 Piscirickettsia group clone LA1-B44N prokMSA_id:62496 AF513949.1 Piscirickettsia group clone LA7-B48N 2.43.5.20.2.1.8849 OTU 1 seq prokMSA_id:62732 AF507825.1 Mono Lake at depth 17.5 m station 6 July 2000 clone ML617.5J-13 proteobacterium 2.43.5.20.2.1.8872 OTU 1 seq prokMSA_id:62739 AF507820.1 Mono Lake at depth 23 m station 6 July 2000 clone ML623J-18 proteobacterium 2.43.5.20.2.1.9006 OTU 2 seqs prokMSA_id:7681 AJ237757.1 Thiomicrospira sp. str. Milos-T1 prokMSA_id:7682 AF082327.1 Thiomicrospira sp. str. Milos T-1 2.43.5.20.2.1.9027 OTU 6 seqs prokMSA_id:7683 L01576.1 Thiomicrospira species prokMSA_id:7687 AF064544.1 Thiomicrospira sp. str. L-12 prokMSA_id:7688 AF064545.1 Thiomicrospira crunogena str. XCL-2 prokMSA_id:7689 AF069959.1 Thiomicrospira crunogena str. MA-3; ATCC700270 prokMSA_id:7690 AF013972.1 Thiomicrospira sp. str. JB-B2 prokMSA_id:75896 AJ294334.1 Thiomicrospira crunogena HY-62 2.43.5.20.2.1.9271 OTU 10 seqs prokMSA_id:7709 AF093002.1 Cycloclasticus sp. str. G prokMSA_id:7710 AF093003.1 Cycloclasticus sp. str. E prokMSA_id:7711 AF093004.1 Cycloclasticus sp. str. W prokMSA_id:7712 AF148215.1 Cycloclasticus oligotrophus prokMSA_id:7713 U57920.1 Cycloclasticus sp. str. N3-PA321 prokMSA_id:19033 AY026915.1 Cycloclasticus spirillensus str. M4-6 prokMSA_id:56290 AB080113.1 Cycloclasticus sp. str. E3 prokMSA_id:61169 AB080114.1 Cycloclasticus sp. str. H4 prokMSA_id:61170 AB080112.1 Cycloclasticus sp. str. E2 prokMSA_id:61177 AB080111.1 Cycloclasticus sp. str. A5 2.43.5.20.2.1.9291 OTU 2 seqs prokMSA_id:66020 AF384373.1 Methylophaga alcalica str. M39 prokMSA_id:86185 AY128533.1 Methylophaga natronica str. Bur2 2.43.5.20.2.1.9299 OTU 4 seqs prokMSA_id:23549 AJ011068.1 Thiomicrospira sp prokMSA_id:70822 AJ011070.1 Thiomicrospira sp prokMSA_id:71356 AJ011072.1 Thiomicrospira sp prokMSA_id:72319 AJ011071.1 Thiomicrospira sp 2.43.5.20.2.1.9352 OTU 1 seq prokMSA_id:7704 AF126549.1 Thialkalimicrobium sibericum str. AL7 2.43.5.20.2.1.9362 OTU 3 seqs prokMSA_id:7702 AF016046.1 Thiomicrospira thyasirae str. DSM 5322 prokMSA_id:7705 AF013976.1 Thiomicrospira sp. str. JB-A1F prokMSA_id:75723 AJ532694.1 uranium mill tailings clone Gitt-KF-166 2.43.5.20.2.1.9392 OTU 3 seqs prokMSA_id:61960 AJ244762.1 Methylophaga sp. str. V4.MO.19 = MM_2320 prokMSA_id:71369 AJ244761.1 Methylophaga sp. str. V4.ME.29 = MM_2343 prokMSA_id:71631 AJ244760.1 Methylophaga sp. str. V4.MS.17 = MM_2735 2.43.5.20.2.1.9405 OTU 1 seq prokMSA_id:44251 AF354608.1 marine clone Arctic96AD-9 2.43.5.20.2.1.9519 OTU 1 seq prokMSA_id:71608 AF126547.1 Thialkalivibrio nitratis str. ALJ12(T) 2.43.5.20.2.1.9557 OTU 1 seq prokMSA_id:61883 AF449225.1 Riftia pachyptila's tube clone R76-B23 2.43.5.20.2.1.9652 OTU 3 seqs prokMSA_id:7697 AF013974.1 Thiomicrospira frisia str. JB-A2 prokMSA_id:7699 AF013973.1 Thiomicrospira sp. str. Art-3 prokMSA_id:82186 AY216451.1 temperate estuarine mud clone KM53 2.43.5.20.2.1.9657 OTU 1 seq prokMSA_id:69845 AF126546.1 Thialkalivibrio versutus str. AL2(T) 2.43.5.20.3 Thiotrichaceae 64 seqs 2.43.5.20.3.1 sf_3 64 seqs 2.43.5.20.3.1.8176 OTU 5 seqs prokMSA_id:18561 AB042542.1 Thiothrix eikelboomii str. COM- prokMSA_id:19111 AB042541.1 Thiothrix eikelboomii str. T2-1 prokMSA_id:39802 AB042539.1 Thiothrix eikelboomii str. KR- prokMSA_id:43111 AB042819.1 Thiothrix eikelboomii str. AP3; ATCC 49788 prokMSA_id:46905 AB042540.1 Thiothrix eikelboomii str. T1-4 2.43.5.20.3.1.8221 OTU 7 seqs prokMSA_id:18257 AB042537.1 Thiothrix disciformis str. B2-8 prokMSA_id:29316 AB042538.1 Thiothrix disciformis str. OS-F prokMSA_id:30988 AB042534.1 Thiothrix disciformis str. B2-7 prokMSA_id:31294 AB042536.1 Thiothrix disciformis str. B5-1 prokMSA_id:34556 AB042532.1 Thiothrix disciformis str. B3-1 prokMSA_id:47122 AB042535.1 Thiothrix disciformis str. SCM- prokMSA_id:71364 AB042533.1 Thiothrix disciformis str. B4-1 2.43.5.20.3.1.8232 OTU 1 seq prokMSA_id:19000 AF424165.1 clone MERTZ_21CM_119 2.43.5.20.3.1.8321 OTU 2 seqs prokMSA_id:60451 AF532775.1 marine sediment clone Limfjorden L9 prokMSA_id:73639 AF532769.1 Wadden Sea sediment clone Dangast A9 2.43.5.20.3.1.8332 OTU 1 seq prokMSA_id:7652 X87277.1 Leucothrix mucor 2.43.5.20.3.1.8353 OTU 1 seq prokMSA_id:7655 L40993.1 Thiothrix nivea 2.43.5.20.3.1.8355 OTU 1 seq prokMSA_id:7656 U32940.1 "Thiothrix ramosa" 2.43.5.20.3.1.8477 OTU 3 seqs prokMSA_id:60452 AF532774.1 marine sediment clone Limfjorden L8 prokMSA_id:60454 AF532772.1 marine sediment clone Limfjorden L22 prokMSA_id:60456 AF532770.1 marine sediment clone Limfjorden D4 2.43.5.20.3.1.8559 OTU 3 seqs prokMSA_id:7509 L40998.1 Thioploca ingrica prokMSA_id:62226 AY115530.1 Thioploca sp. str. 'Lake Constance' prokMSA_id:67230 AF452892.1 Thioploca sp. 'Lake Biwa' str. Lake Biwa 2.43.5.20.3.1.8677 OTU 1 seq prokMSA_id:7510 AF064543.1 Beggiatoa sp. 'Monterey Canyon' 2.43.5.20.3.1.8678 OTU 1 seq prokMSA_id:7511 AF035956.1 Beggiatoa sp. 'Bay Concepcion' str. Bay Concepcion 'Bay 2.43.5.20.3.1.8703 OTU 1 seq prokMSA_id:81842 AF110275.1 Beggiatoa sp. str. AA5A 2.43.5.20.3.1.8731 OTU 2 seqs prokMSA_id:7609 AF129549.1 Achromatium sp. JD2 prokMSA_id:7610 AF129551.1 Achromatium sp. JD13 2.43.5.20.3.1.8741 OTU 1 seq prokMSA_id:60455 AF532771.1 marine sediment clone Limfjorden L10 2.43.5.20.3.1.8752 OTU 1 seq prokMSA_id:81307 AF110276.1 Beggiatoa sp. str. MS-81-1c 2.43.5.20.3.1.8804 OTU 11 seqs prokMSA_id:29860 AJ307933.1 microbial 'pearl'- community clone sipK4 prokMSA_id:82296 AJ548931.1 Thiothrix sp. clone BIOEST-42 prokMSA_id:86244 AY208809.1 cave microbial mats clone LKC2.127-27 prokMSA_id:109595 AY510226.1 microbial mat cave sulfidic spring clone LKC3_159.7 prokMSA_id:109874 AY510233.1 microbial mat cave sulfidic spring clone LKC3_22.33 prokMSA_id:110033 AY510231.1 microbial mat cave sulfidic spring clone LKC3_19.29 prokMSA_id:110160 AY510224.1 microbial mat cave sulfidic spring clone LKC3_22.97 prokMSA_id:110189 AY510230.1 microbial mat cave sulfidic spring clone LKC3_127.33 prokMSA_id:110661 AY510229.1 microbial mat cave sulfidic spring clone LKC3_127.26 prokMSA_id:111010 AY510232.1 microbial mat cave sulfidic spring clone LKC3_19B.29 prokMSA_id:111290 AY510223.1 microbial mat cave sulfidic spring clone LKC3_22.89 2.43.5.20.3.1.8942 OTU 2 seqs prokMSA_id:7607 AJ010595.1 Achromatium minus prokMSA_id:7608 AJ010596.1 Achromatium minus 2.43.5.20.3.1.8982 OTU 3 seqs prokMSA_id:7591 AJ010593.1 Achromatium oxaliferum prokMSA_id:7592 AJ010594.1 Achromatium oxaliferum prokMSA_id:7595 AF129556.1 Achromatium sp. HK9 2.43.5.20.3.1.9007 OTU 3 seqs prokMSA_id:37302 AB042544.1 Thiothrix flexilis str. EJ1M-B prokMSA_id:38006 AB042545.1 Thiothrix flexilis str. EJ2M-B prokMSA_id:43018 AB042543.1 Thiothrix flexilis str. SNR-3 2.43.5.20.3.1.9015 OTU 1 seq prokMSA_id:81779 AF110274.1 Beggiatoa alba str. B18LD; ATCC 33555 2.43.5.20.3.1.9114 OTU 1 seq prokMSA_id:7593 AF129548.1 Achromatium sp. JD1 2.43.5.20.3.1.9119 OTU 1 seq prokMSA_id:7594 AF129550.1 Achromatium sp. JD8 2.43.5.20.3.1.9125 OTU 1 seq prokMSA_id:7596 AF129557.1 Achromatium sp. HK13 2.43.5.20.3.1.9178 OTU 6 seqs prokMSA_id:7602 AF129554.1 Achromatium sp. HK3 prokMSA_id:7603 AF129555.1 Achromatium sp. HK6 prokMSA_id:7604 AF129559.1 Achromatium sp. HK24 prokMSA_id:7611 AF129552.1 Achromatium sp. HK1 prokMSA_id:7612 AF129553.1 Achromatium sp. HK2 prokMSA_id:7613 AF129558.1 Achromatium sp. HK15 2.43.5.20.3.1.9189 OTU 2 seqs prokMSA_id:18746 AF148516.1 Thiothrix sp. str. CT3 prokMSA_id:109260 AB181494.1 wastewater biofilm clone Biofilm-30 2.43.5.20.3.1.9321 OTU 1 seq prokMSA_id:84651 AB108786.1 marine sediment clone Tokyo Bay D 2.43.5.20.3.1.9510 OTU 1 seq prokMSA_id:70923 AF129012.1 Thiomargarita namibiensis 2.43.5.20.4 Unclassified 1 seq 2.43.5.20.4.1 sf_1 1 seq 2.43.5.20.4.1.8323 OTU 1 seq prokMSA_id:70607 AF420363.1 hydrothermal sediment clone AF420363 2.43.5.21 Unclassified 219 seqs 2.43.5.21.1 Unclassified 219 seqs 2.43.5.21.1.1 sf_3 215 seqs 2.43.5.21.1.1.8200 OTU 1 seq prokMSA_id:21399 AF195457.1 July collection clone kpj394f 2.43.5.21.1.1.8212 OTU 1 seq prokMSA_id:8712 AF142786.1 clone ACE-4 2.43.5.21.1.1.8213 OTU 1 seq prokMSA_id:50129 AF424072.1 clone MERTZ_2CM_66 2.43.5.21.1.1.8215 OTU 1 seq prokMSA_id:44798 AB049749.1 Pseudomonas sp. Loihi-Chm()-9 2.43.5.21.1.1.8234 OTU 1 seq prokMSA_id:31566 AF235115.1 North Sea clone KTc1113 2.43.5.21.1.1.8240 OTU 1 seq prokMSA_id:59167 AY136133.1 Gulf Eilat Red Sea isolate str. RED77 2.43.5.21.1.1.8245 OTU 1 seq prokMSA_id:64956 AY095641.1 2.43.5.21.1.1.8285 OTU 1 seq prokMSA_id:7646 AJ240974.1 Norway:(Svalbard)Hornsund clone Sva0115 2.43.5.21.1.1.8287 OTU 1 seq prokMSA_id:7649 M90415.1 symbiont of Solemya velum 2.43.5.21.1.1.8291 OTU 1 seq prokMSA_id:49895 AF424146.1 clone MERTZ_0CM_220 2.43.5.21.1.1.8295 OTU 1 seq prokMSA_id:47749 AB041300.1 clone ECS30 2.43.5.21.1.1.8301 OTU 1 seq prokMSA_id:8029 AJ241018.1 Norway:(Svalbard)Hornsund clone Sva0714 2.43.5.21.1.1.8311 OTU 1 seq prokMSA_id:7643 AB015253.1 deepest cold-seep area Japan Trench clone JTB254 proteobacterium 2.43.5.21.1.1.8314 OTU 1 seq prokMSA_id:40388 AF469316.1 clone CTD27B 2.43.5.21.1.1.8324 OTU 1 seq prokMSA_id:20997 AF424175.1 clone MERTZ_21CM_269 2.43.5.21.1.1.8328 OTU 1 seq prokMSA_id:7650 U41049.1 Solemya occidentalis gill symbiont 2.43.5.21.1.1.8333 OTU 1 seq prokMSA_id:43550 AF419288.1 antarctic soil clone bh8.50 2.43.5.21.1.1.8339 OTU 8 seqs prokMSA_id:29007 AJ295469.1 rape rhizosphere clone wr0008 prokMSA_id:46403 AJ292675.1 PCB-polluted soil clone WD284 prokMSA_id:65452 AY102333.1 heavy metal-contaminated soil clone a13140 prokMSA_id:65456 AY102329.1 heavy metal-contaminated soil clone a13133 prokMSA_id:65459 AY102326.1 heavy metal-contaminated soil clone a13128 prokMSA_id:65468 AY102316.1 heavy metal-contaminated soil clone a13109 prokMSA_id:77626 AB074620.1 pea aphid symbiont clone APe4_56 prokMSA_id:104155 AY212729.1 water 5 m downstream manure clone 35ds5 2.43.5.21.1.1.8349 OTU 2 seqs prokMSA_id:7636 AJ240988.1 Norway:(Svalbard)Hornsund clone Sva0864 prokMSA_id:7651 AJ240986.1 Norway:(Svalbard)Hornsund clone Sva0071 2.43.5.21.1.1.8354 OTU 1 seq prokMSA_id:36334 AF424153.1 clone MERTZ_0CM_372 2.43.5.21.1.1.8357 OTU 1 seq prokMSA_id:7659 U29163.1 mussel thioautotrophic gill symbiont str. MAR1 2.43.5.21.1.1.8381 OTU 1 seq prokMSA_id:20074 Z88573.1 HNSS31 2.43.5.21.1.1.8383 OTU 1 seq prokMSA_id:7660 L25713.1 Vesicomya chordata gill symbiont 2.43.5.21.1.1.8390 OTU 1 seq prokMSA_id:45822 AF424077.1 clone MERTZ_2CM_89 2.43.5.21.1.1.8391 OTU 1 seq prokMSA_id:52144 AJ401385.1 marine sediment clone DSS54 2.43.5.21.1.1.8397 OTU 1 seq prokMSA_id:77715 AJ535226.1 marine sediment above hydrate ridge clone Hyd24-13 proteobacterium 2.43.5.21.1.1.8405 OTU 1 seq prokMSA_id:22965 AF469259.1 clone 33-FL111B98 2.43.5.21.1.1.8419 OTU 2 seqs prokMSA_id:30797 AF285617.1 clone Car177 prokMSA_id:74502 AF285612.1 clone Car166 2.43.5.21.1.1.8424 OTU 1 seq prokMSA_id:7675 L25718.1 Calyptogena elongata gill symbiont 2.43.5.21.1.1.8441 OTU 1 seq prokMSA_id:20992 AF424063.1 clone MERTZ_2CM_38 2.43.5.21.1.1.8459 OTU 1 seq prokMSA_id:30360 AF188169.1 directly Pfiesteria piscicida dinoflagellate clone KEppiB7 2.43.5.21.1.1.8485 OTU 27 seqs prokMSA_id:8809 AF199440.1 Marinobacter sp. str. DS40M8 prokMSA_id:16390 AF212207.2 Marinobacter sp. str. Aplume1.1727a prokMSA_id:20197 AF359552.1 Marine ATAM407_2035 prokMSA_id:21222 AF173969.1 Marinobacter aquaeolei str. KT02ds19 prokMSA_id:22385 AF295032.1 Marinobacter sp. str. NCE312 prokMSA_id:26877 AJ294359.1 Marinobacter sp. str. 407-13 prokMSA_id:31320 AF212209.2 Marinobacter sp. str. Asw2.1747a prokMSA_id:31627 AF212213.2 Marinobacter sp. str. Splume3.1825c prokMSA_id:47395 AF212210.2 Marinobacter sp. str. Splume1.1802c prokMSA_id:48119 AF212211.2 Marinobacter sp. str. Splume2.1814c prokMSA_id:48682 AF212208.2 Marinobacter sp. str. Asw1.1741a prokMSA_id:80393 AF468307.1 Arctic sea ice; northern Fram Strait clone ARKICE-88 prokMSA_id:81723 AY196982.1 Marinobacter sp. 3030dQ prokMSA_id:82024 AY165592.1 pack ice northern Fram Strait Arctic Ocean clone ARKXV/1-140 sea prokMSA_id:82079 AY165595.1 pack ice northern Fram Strait Arctic Ocean clone ARKXV/1-157 sea prokMSA_id:83574 AJ557841.1 seawater prokMSA_id:83771 AJ557844.1 seawater prokMSA_id:84236 AJ557854.1 seawater prokMSA_id:84377 AJ557851.1 seawater prokMSA_id:84428 AJ557846.1 seawater prokMSA_id:85559 AJ557843.1 seawater prokMSA_id:85565 AJ542653.1 Marinobacter sp. 4301-10/2 prokMSA_id:86527 AJ557861.1 seawater prokMSA_id:95295 AY394884.1 Marinobacter sp. str. EPR 35 prokMSA_id:95336 AY394878.1 Marinobacter sp. str. EPR 21 prokMSA_id:101581 AY515439.1 Marinobacter sp. str. GWS-BW-H30M prokMSA_id:106938 AB166996.1 Marinobacter sp. str. NT N63 2.43.5.21.1.1.8488 OTU 1 seq prokMSA_id:84942 AY274150.1 gold mine tailings clone D145 2.43.5.21.1.1.8502 OTU 1 seq prokMSA_id:8824 X99117.1 SELECT-1 2.43.5.21.1.1.8515 OTU 1 seq prokMSA_id:39848 AF328219.1 clone KS86 2.43.5.21.1.1.8522 OTU 1 seq prokMSA_id:51403 AF195461.1 July collection clone kpj02f 2.43.5.21.1.1.8548 OTU 1 seq prokMSA_id:18791 AJ297454.1 Svalbard: Hornsund clone Sva1005 2.43.5.21.1.1.8549 OTU 1 seq prokMSA_id:43178 AB049750.1 Pseudomonas sp. Loihi-Chm()-10 2.43.5.21.1.1.8551 OTU 1 seq prokMSA_id:25219 AF424065.1 clone MERTZ_2CM_40 2.43.5.21.1.1.8560 OTU 1 seq prokMSA_id:17817 AF424115.1 clone MERTZ_2CM_275 2.43.5.21.1.1.8566 OTU 1 seq prokMSA_id:47907 AF424117.1 clone MERTZ_2CM_277 2.43.5.21.1.1.8585 OTU 3 seqs prokMSA_id:7774 AB021322.1 phenol-digesting sludge clone rJ4 prokMSA_id:7775 AB021323.1 phenol-digesting sludge isolate rJ5 prokMSA_id:7776 AJ001271.1 compost biofilter isolate LX1 2.43.5.21.1.1.8606 OTU 2 seqs prokMSA_id:79903 AY193163.1 marine tidal mat clone BTM28 prokMSA_id:80244 AY193157.1 marine tidal mat clone BTM43 2.43.5.21.1.1.8625 OTU 1 seq prokMSA_id:29378 AF211280.1 brackish water black mud clone CE102 2.43.5.21.1.1.8628 OTU 1 seq prokMSA_id:43151 AF328185.1 clone KS38 2.43.5.21.1.1.8646 OTU 1 seq prokMSA_id:78034 AY171333.1 marine sediment clone s30 2.43.5.21.1.1.8647 OTU 1 seq prokMSA_id:25089 AF194404.1 molecular isolate; collection July clone kpj53f 2.43.5.21.1.1.8657 OTU 1 seq prokMSA_id:51432 AF424176.1 clone MERTZ_21CM_277 2.43.5.21.1.1.8668 OTU 1 seq prokMSA_id:48746 AF424087.1 clone MERTZ_2CM_122 2.43.5.21.1.1.8671 OTU 6 seqs prokMSA_id:20571 AB054183.1 marine sponge clone HOC49 prokMSA_id:21103 AB054181.1 marine sponge clone HOC47 prokMSA_id:33232 AB054174.1 marine sponge clone HOC40 prokMSA_id:49286 AB054139.1 marine sponge clone HOC5 prokMSA_id:49861 AB054170.1 marine sponge clone HOC36 prokMSA_id:52080 AB054172.1 marine sponge clone HOC38 2.43.5.21.1.1.8674 OTU 1 seq prokMSA_id:7881 AF047619.1 Sulphur River Parker Cave Kentucky clone SRang1.33 2.43.5.21.1.1.8675 OTU 1 seq prokMSA_id:45719 AF424136.1 clone MERTZ_0CM_77 2.43.5.21.1.1.8676 OTU 1 seq prokMSA_id:37316 AJ401386.1 marine sediment clone DSS65 2.43.5.21.1.1.8696 OTU 1 seq prokMSA_id:16507 AF354615.1 obtained depth 55m Arctic Ocean (SCICEX 95 cruise) clone Arctic95D-6 2.43.5.21.1.1.8714 OTU 7 seqs prokMSA_id:8807 AJ000726.1 Marinobacter aquaeolei str. VT8 prokMSA_id:8816 AB021372.1 Marinobacter hydrocarbonoclasticus str. ATCC 27132T prokMSA_id:8818 U61848.1 Marinobacter sp. str. CAB prokMSA_id:8821 AB010868.1 strain HTB148 clone HTB148 prokMSA_id:60388 AF513451.1 Alteromonadaceae isolate str. LA34A prokMSA_id:75064 AJ519788.1 Marinobacter sp. str. R2 prokMSA_id:80080 AB089804.1 Marinobacter sp. str. HB7 2.43.5.21.1.1.8743 OTU 1 seq prokMSA_id:23606 AB059265.1 obligate barophile deep-sea water Mariana Trench 2.43.5.21.1.1.8759 OTU 1 seq prokMSA_id:20176 AJ252663.1 Agricultural soil SC-I-87 () clone SC-I-87 2.43.5.21.1.1.8760 OTU 1 seq prokMSA_id:8513 AF159680.1 related to 2.43.5.21.1.1.8774 OTU 1 seq prokMSA_id:73147 AF424089.1 clone MERTZ_2CM_135 2.43.5.21.1.1.8788 OTU 1 seq prokMSA_id:20195 AF424116.1 clone MERTZ_2CM_276 2.43.5.21.1.1.8805 OTU 1 seq prokMSA_id:62458 AY102022.1 collected June 17 1999 isolate str. HTCC153 2.43.5.21.1.1.8809 OTU 1 seq prokMSA_id:17947 AF320337.1 USA: Hillside Springs Yellowstone clone hs2_55 2.43.5.21.1.1.8815 OTU 1 seq prokMSA_id:7560 AF047624.1 Sulphur River Parker Cave Kentucky clone SRang2.5 2.43.5.21.1.1.8816 OTU 1 seq prokMSA_id:7561 AB015252.1 deepest cold-seep area Japan Trench clone JTB148 proteobacterium 2.43.5.21.1.1.8826 OTU 1 seq prokMSA_id:24674 AF424101.1 clone MERTZ_2CM_211 2.43.5.21.1.1.8832 OTU 1 seq prokMSA_id:37621 AF424068.1 clone MERTZ_2CM_53 2.43.5.21.1.1.8858 OTU 2 seqs prokMSA_id:7469 AF142874.1 clone BURTON-56 prokMSA_id:21294 AF424140.1 clone MERTZ_0CM_117 2.43.5.21.1.1.8867 OTU 1 seq prokMSA_id:39796 AF145821.1 Metal-contaminated soil clone K20-18 2.43.5.21.1.1.8874 OTU 2 seqs prokMSA_id:55790 AF420353.1 hydrothermal sediment clone AF420353 prokMSA_id:67774 AF420367.1 hydrothermal sediment clone AF420367 2.43.5.21.1.1.8875 OTU 1 seq prokMSA_id:37395 AJ297471.1 Svalbard: Hornsund clone Sva0535 2.43.5.21.1.1.8879 OTU 1 seq prokMSA_id:39499 AF447179.1 antarctic soil clone bh3.31 2.43.5.21.1.1.8883 OTU 1 seq prokMSA_id:37630 AF424108.1 clone MERTZ_2CM_253 2.43.5.21.1.1.8911 OTU 1 seq prokMSA_id:7600 AF142830.1 clone BURTON-10 2.43.5.21.1.1.8920 OTU 1 seq prokMSA_id:7601 AF142798.1 clone ACE-21 2.43.5.21.1.1.8922 OTU 1 seq prokMSA_id:43655 AF328179.1 clone KS30 2.43.5.21.1.1.8926 OTU 1 seq prokMSA_id:79212 AB099937.1 inactive deep-sea hydrothermal vent chimneys clone IheB2-13 2.43.5.21.1.1.8933 OTU 1 seq prokMSA_id:41406 AF424161.1 clone MERTZ_21CM_15 2.43.5.21.1.1.8959 OTU 1 seq prokMSA_id:60644 AF406527.1 bacterioplankton clone AEGEAN_133 2.43.5.21.1.1.8967 OTU 1 seq prokMSA_id:42824 AF424099.1 clone MERTZ_2CM_204 2.43.5.21.1.1.8971 OTU 2 seqs prokMSA_id:17654 AJ252637.1 Agricultural soil SC-I-47 () clone SC-I-47 prokMSA_id:34477 AJ252661.1 Agricultural soil SC-I-85 () clone SC-I-85 2.43.5.21.1.1.8985 OTU 1 seq prokMSA_id:26590 AF424107.1 clone MERTZ_2CM_252 2.43.5.21.1.1.9013 OTU 1 seq prokMSA_id:7506 X97113.1 TM20 2.43.5.21.1.1.9016 OTU 1 seq prokMSA_id:45957 AF235120.1 North Sea clone KTc1119 2.43.5.21.1.1.9021 OTU 1 seq prokMSA_id:7618 AB022713.1 Obligately oligotrophic isolate str. KI89C bacteria 2.43.5.21.1.1.9040 OTU 1 seq prokMSA_id:40248 AF422601.1 clone t027 2.43.5.21.1.1.9044 OTU 1 seq prokMSA_id:67771 AF420370.1 hydrothermal sediment clone AF420370 2.43.5.21.1.1.9053 OTU 1 seq prokMSA_id:19213 Z93991.1 clone T32 2.43.5.21.1.1.9061 OTU 1 seq prokMSA_id:50315 AB031651.1 clone TIHP368-52 2.43.5.21.1.1.9095 OTU 1 seq prokMSA_id:44307 AF424171.1 clone MERTZ_21CM_217 2.43.5.21.1.1.9103 OTU 1 seq prokMSA_id:8179 AF159674.1 related to 2.43.5.21.1.1.9105 OTU 1 seq prokMSA_id:37275 AF434983.1 sponge symbiont JAWS6 clone 2.43.5.21.1.1.9121 OTU 1 seq prokMSA_id:21269 AJ344197.1 winter Bugach pond clone 2.43.5.21.1.1.9124 OTU 1 seq prokMSA_id:69316 AY145601.1 10e-6 dilution marine samples Weser estuary clone DC8-80-1 proteobacterium 2.43.5.21.1.1.9129 OTU 1 seq prokMSA_id:40146 AF223296.1 clone B2M23 2.43.5.21.1.1.9137 OTU 1 seq prokMSA_id:27856 AF424102.1 clone MERTZ_2CM_218 2.43.5.21.1.1.9173 OTU 1 seq prokMSA_id:7529 AB015514.1 deep-sea sediment clone BD1-1 2.43.5.21.1.1.9193 OTU 1 seq prokMSA_id:25966 AF424127.1 clone MERTZ_2CM_319 2.43.5.21.1.1.9195 OTU 1 seq prokMSA_id:24728 AF424097.1 clone MERTZ_2CM_182 2.43.5.21.1.1.9206 OTU 1 seq prokMSA_id:54886 AF424162.1 clone MERTZ_21CM_39 2.43.5.21.1.1.9269 OTU 1 seq prokMSA_id:20100 AB022612.1 SA51 clone 2.43.5.21.1.1.9279 OTU 1 seq prokMSA_id:44340 AF333529.1 clone R202 2.43.5.21.1.1.9314 OTU 1 seq prokMSA_id:8095 U62831.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB07 2.43.5.21.1.1.9315 OTU 1 seq prokMSA_id:37738 AB041312.1 clone ECS42 2.43.5.21.1.1.9317 OTU 1 seq prokMSA_id:38399 AF424093.1 clone MERTZ_2CM_167 2.43.5.21.1.1.9329 OTU 1 seq prokMSA_id:36080 AF424109.1 clone MERTZ_2CM_255 2.43.5.21.1.1.9331 OTU 1 seq prokMSA_id:48531 AY017062.1 Pseudomonas sp. str. CL-2 2.43.5.21.1.1.9336 OTU 1 seq prokMSA_id:39706 AF102866.1 Bankia setacea symbiont 2.43.5.21.1.1.9340 OTU 1 seq prokMSA_id:50920 AF424105.1 clone MERTZ_2CM_227 2.43.5.21.1.1.9347 OTU 2 seqs prokMSA_id:60868 AY135909.1 clone SG2-70 prokMSA_id:80841 AJ538046.1 agricultural soil clone CF34 2.43.5.21.1.1.9394 OTU 1 seq prokMSA_id:59790 AY133400.1 coastal Antarctic sediment clone BB2_230 2.43.5.21.1.1.9396 OTU 1 seq prokMSA_id:72638 AF170423.1 shal water hydrothermal vent isolate str. OAII2 OAII2 2.43.5.21.1.1.9403 OTU 1 seq prokMSA_id:36572 AF422577.1 clone t002 2.43.5.21.1.1.9413 OTU 1 seq prokMSA_id:83295 AY221054.1 Mammoth cave clone CCM19a 2.43.5.21.1.1.9419 OTU 1 seq prokMSA_id:34897 AF424057.1 clone MERTZ_2CM_5 2.43.5.21.1.1.9434 OTU 1 seq prokMSA_id:31156 AF424151.1 clone MERTZ_0CM_330 2.43.5.21.1.1.9454 OTU 1 seq prokMSA_id:37312 AF424141.1 clone MERTZ_0CM_134 2.43.5.21.1.1.9456 OTU 1 seq prokMSA_id:7587 AB015248.1 deepest cold-seep area Japan Trench clone JTB23 proteobacterium 2.43.5.21.1.1.9459 OTU 2 seqs prokMSA_id:49006 AF422611.1 clone t041 prokMSA_id:49267 AF422596.1 clone t022 2.43.5.21.1.1.9460 OTU 1 seq prokMSA_id:22488 AF451252.1 Aeromonas sp. str. A33 2.43.5.21.1.1.9461 OTU 1 seq prokMSA_id:45103 AF142925.1 clone PENDANT-13 2.43.5.21.1.1.9462 OTU 1 seq prokMSA_id:47143 AF440706.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-18 2.43.5.21.1.1.9473 OTU 1 seq prokMSA_id:80175 AF468261.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-58 2.43.5.21.1.1.9482 OTU 1 seq prokMSA_id:43943 AF424157.1 clone MERTZ_0CM_369 2.43.5.21.1.1.9485 OTU 1 seq prokMSA_id:7599 AF159683.1 related to sulfur-oxidizing symbionts 2.43.5.21.1.1.9487 OTU 1 seq prokMSA_id:42421 U86459.1 Sampling site Northwest Pacific Ocean California Current 32deg.32.27'N 121deg21.53'W; 3000 m depth; E. coli alignment positions 537 to 1391 clone pN1-38 2.43.5.21.1.1.9490 OTU 1 seq prokMSA_id:36950 AF333531.1 clone R13 2.43.5.21.1.1.9492 OTU 1 seq prokMSA_id:24359 AF424164.1 clone MERTZ_21CM_112 2.43.5.21.1.1.9498 OTU 2 seqs prokMSA_id:79344 AY187336.1 drinking-water biofilm clone csbio160361 prokMSA_id:79587 AY187337.1 drinking-water biofilm clone csbio160382 2.43.5.21.1.1.9509 OTU 1 seq prokMSA_id:27805 AF224800.1 clone Car16fa 2.43.5.21.1.1.9514 OTU 1 seq prokMSA_id:26630 AY007676.1 marine isolate NOR5 2.43.5.21.1.1.9521 OTU 1 seq prokMSA_id:49500 AF424137.1 clone MERTZ_0CM_85 2.43.5.21.1.1.9522 OTU 1 seq prokMSA_id:9195 AF159675.1 related to Marinomonas group 2.43.5.21.1.1.9524 OTU 1 seq prokMSA_id:48069 AF424145.1 clone MERTZ_0CM_211 2.43.5.21.1.1.9531 OTU 1 seq prokMSA_id:17992 AJ400353.1 f cytometric sorted marine sample subpopulation 3 clone ZD0417 bacterium 2.43.5.21.1.1.9544 OTU 1 seq prokMSA_id:53877 AF424163.1 clone MERTZ_21CM_103 2.43.5.21.1.1.9549 OTU 1 seq prokMSA_id:31454 AF223299.1 marine sediment clone B2M60 2.43.5.21.1.1.9560 OTU 1 seq prokMSA_id:8202 AF159681.1 related to 2.43.5.21.1.1.9568 OTU 1 seq prokMSA_id:63326 AF523888.1 forested wetland clone RCP2-96 2.43.5.21.1.1.9572 OTU 1 seq prokMSA_id:21930 AF351230.1 coal tar-contaminated groundwater clone 4-25 2.43.5.21.1.1.9580 OTU 1 seq prokMSA_id:25472 AF424096.1 clone MERTZ_2CM_175 2.43.5.21.1.1.9581 OTU 1 seq prokMSA_id:35529 AF424152.1 clone MERTZ_0CM_353 2.43.5.21.1.1.9582 OTU 1 seq prokMSA_id:27082 AF343953.1 marine NBF32 2.43.5.21.1.1.9584 OTU 2 seqs prokMSA_id:20468 AF264683.1 Marinobacter sp. str. MR-1 prokMSA_id:29755 AF264687.1 Marinobacter sp. str. MR-6 2.43.5.21.1.1.9585 OTU 7 seqs prokMSA_id:30803 AB054162.1 marine sponge clone HOC28 prokMSA_id:40999 AB054171.1 marine sponge clone HOC37 prokMSA_id:46213 AB054180.1 marine sponge clone HOC46 prokMSA_id:47851 AB054184.1 marine sponge clone HOC50 prokMSA_id:50717 AB054165.1 marine sponge clone HOC31 prokMSA_id:51009 AB054146.1 marine sponge clone HOC12 prokMSA_id:54932 AB054167.1 marine sponge clone HOC33 2.43.5.21.1.1.9590 OTU 2 seqs prokMSA_id:29157 AY012532.1 USA: Lake Michigan Fox Point clone prokMSA_id:32297 AY012533.1 USA: Lake Michigan Fox Point clone 2.43.5.21.1.1.9596 OTU 1 seq prokMSA_id:34312 AB022622.1 SB09 clone 2.43.5.21.1.1.9597 OTU 1 seq prokMSA_id:36761 AF424086.1 clone MERTZ_2CM_121 2.43.5.21.1.1.9605 OTU 1 seq prokMSA_id:42463 AF232924.1 United Kingdom: Montserrat geothermal springs clone MS11 2.43.5.21.1.1.9606 OTU 1 seq prokMSA_id:8791 AF142863.1 clone BURTON-45 2.43.5.21.1.1.9609 OTU 1 seq prokMSA_id:48635 AF369720.1 South Korea: mud flat Sunchon Bay Chunnam province clone 123 2.43.5.21.1.1.9636 OTU 1 seq prokMSA_id:8805 AF142911.1 clone ORGANIC-9 2.43.5.21.1.1.9637 OTU 1 seq prokMSA_id:42477 AF424135.1 clone MERTZ_0CM_61 2.43.5.21.1.2 sf_4 2 seqs 2.43.5.21.1.2.8855 OTU 2 seqs prokMSA_id:27044 AF286117.1 symbiont prokMSA_id:53049 AF211147.1 Candidatus Carsonella ruddii 2.43.5.21.1.3 sf_5 1 seq 2.43.5.21.1.3.9342 OTU 1 seq prokMSA_id:45405 AF316800.1 Crater Lake clone CL120-7 2.43.5.21.1.4 sf_6 1 seq 2.43.5.21.1.4.8744 OTU 1 seq prokMSA_id:36844 AB049743.1 Methylophaga sp. Loihi-Chm()-3 2.43.5.22 uranium waste clones 2 seqs 2.43.5.22.1 Unclassified 2 seqs 2.43.5.22.1.1 sf_1 2 seqs 2.43.5.22.1.1.8231 OTU 1 seq prokMSA_id:78828 AJ536870.1 uranium waste soil clone JG30a-KF-21 2.43.5.22.1.1.8747 OTU 1 seq prokMSA_id:78921 AJ536882.1 uranium waste soil clone JG30-KF-CM35 2.43.5.23 Vibrionales 347 seqs 2.43.5.23.1 Vibrionaceae 347 seqs 2.43.5.23.1.1 sf_1 347 seqs 2.43.5.23.1.1.8223 OTU 10 seqs prokMSA_id:29041 AF384142.1 diseased sponge isolate str. NW4079 prokMSA_id:38009 AJ296157.1 Spain:Galicia isolate str. PP-145.98 prokMSA_id:60378 AF513461.1 Vibrio sp. str. PH1 prokMSA_id:66767 AJ440005.1 Vibrio coralliilyticus prokMSA_id:70057 AJ440004.1 Vibrio coralliilyticus str. LMG 21349 prokMSA_id:71152 AJ316170.1 Vibrio sp. str. LMG 20548 prokMSA_id:72904 AJ316171.1 Vibrio neptunius str. LMG 20536 prokMSA_id:73319 AJ316167.1 Vibrio coralliilyticus str. LMG 10953 prokMSA_id:109432 AY700602.1 Australia: Great Barrier Reef clone PDA-OTU4 prokMSA_id:112501 AY911392.1 Vibrio shilonii str. MP-3 2.43.5.23.1.1.8224 OTU 2 seqs prokMSA_id:9321 X74711.1 Vibrio metschnikovii prokMSA_id:72041 AJ316180.1 Vibrio sp. str. LMG 4426 2.43.5.23.1.1.8267 OTU 22 seqs prokMSA_id:9279 Y08430.1 Vibrio tapetis str. CECT 4600 prokMSA_id:40343 AB055796.1 Vibrio sp. str. Hdeep-1 prokMSA_id:42870 AF293974.1 isolate str. 4c prokMSA_id:47083 AY046955.1 Vibrio splendidus str. B17 prokMSA_id:56555 AJ515218.1 Vibrio splendidus str. TNEMF6 prokMSA_id:69396 AJ515220.1 Vibrio splendidus str. LMG 10952 prokMSA_id:70080 AJ490157.1 Vibrio chagasii str. LMG 13237 prokMSA_id:71509 AJ316199.1 Vibrio chagasii str. R-3712 prokMSA_id:71896 AJ316193.1 Vibrio kanaloae str. LMG 20539 prokMSA_id:71902 AJ391203.1 Vibrio sp. str. AS-42 prokMSA_id:72056 AF456339.1 Vibrio sp. str. PMV18 prokMSA_id:73227 AJ491290.1 Vibrio pomeroyi str. LMG 20537 prokMSA_id:73863 AB055792.1 Vibrio sp. str. Cdeep-1 prokMSA_id:74459 AJ515219.1 Vibrio splendidus str. TNNIII7 prokMSA_id:78597 AY129278.1 Vibrio tapetis str. LP2 prokMSA_id:82987 AY245182.1 Vibrio sp. 3 prokMSA_id:83553 AY245183.1 Vibrio sp. 6 prokMSA_id:84666 AY227706.1 Vibrio splendidus str. DCM1 prokMSA_id:85453 AY245184.1 Vibrio sp. L5 prokMSA_id:86378 AF539780.1 Pseudoalteromonas sp. str. R9 prokMSA_id:86584 AY245181.1 Vibrio sp. 13a prokMSA_id:110356 AJ874361.1 Vibrio splendidus str. 01/108 2.43.5.23.1.1.8394 OTU 1 seq prokMSA_id:9282 AB013297.1 Vibrio rumoiensis str. S-1 2.43.5.23.1.1.8443 OTU 15 seqs prokMSA_id:9159 D21226.1 Vibrio species prokMSA_id:9160 AB003191.1 Photobacterium profundum prokMSA_id:9161 AB016982.1 Hyphomicrobium indicum str. MBIC3157 prokMSA_id:71373 AB055793.1 Hyphomicrobium sp. str. Ddeep-1 prokMSA_id:94122 AJ551094.1 Hyphomicrobium sp. wp13 prokMSA_id:99594 AB159513.1 Photobacterium indicum str. NBRC 14233 prokMSA_id:101321 CR378672.1 Photobacterium profundum str. SS9 prokMSA_id:101494 CR378673.1 Photobacterium profundum str. ss9 prokMSA_id:101666 CR378674.1 Photobacterium profundum str. SS9 prokMSA_id:102714 AY538749.1 Photobacterium sp. str. SL13 prokMSA_id:102897 AY582933.1 Photobacterium sp. str. D1 prokMSA_id:103044 AY582934.1 Photobacterium sp. str. D2 prokMSA_id:105342 CR378663.1 Photobacterium profundum str. SS9 prokMSA_id:106316 AY538750.1 Photobacterium sp. str. SL62 prokMSA_id:108382 NC_006370.1 Photobacterium profundum str. SS9 2.43.5.23.1.1.8460 OTU 1 seq prokMSA_id:42976 AF224852.1 clone Car123rc 2.43.5.23.1.1.8471 OTU 26 seqs prokMSA_id:9151 X74686.1 Photobacterium leiognathi prokMSA_id:9152 Z21730.1 Photobacterium leiognathi prokMSA_id:9154 D25309.1 Photobacterium leiognathi prokMSA_id:38240 AF465393.1 Photobacterium sp. str. UST991130-005 prokMSA_id:83564 AB095447.1 Photobacterium sp. str. YS27-3 prokMSA_id:98933 AY204491.1 Photobacterium leiognathi str. lelon1.1 prokMSA_id:99084 AY204492.1 Photobacterium leiognathi str. lequu1.1 prokMSA_id:99244 AY204493.1 Photobacterium leiognathi str. lfasc1.1 prokMSA_id:99394 AY204494.1 Photobacterium leiognathi str. ljone1.1 prokMSA_id:99551 AY204495.1 Photobacterium leiognathi str. lleuc1.1 prokMSA_id:99707 AY204496.1 Photobacterium leiognathi str. lnuch1.1 prokMSA_id:99869 AY204497.1 Photobacterium leiognathi str. lphil1.1 prokMSA_id:100021 AY204498.1 Photobacterium leiognathi str. lrivu1.1 prokMSA_id:100182 AY204499.1 Photobacterium leiognathi str. lster1.1 prokMSA_id:102427 AY455870.1 Photobacterium leiognathi str. ATCC 25587 prokMSA_id:102585 AY455871.1 Photobacterium mandapamensis str. seafl.1.1 prokMSA_id:102752 AY455872.1 Photobacterium mandapamensis str. seafl.1.3 prokMSA_id:102898 AY455873.1 Photobacterium mandapamensis str. seafl.1.4 prokMSA_id:103923 AY204488.1 Photobacterium leiognathi str. gachl1.1 prokMSA_id:104076 AY204489.1 Photobacterium leiognathi str. gminu1.1 prokMSA_id:104077 AY204501.1 Photobacterium leiognathi str. smega1.1 prokMSA_id:105760 AY292917.1 Photobacterium leiognathi prokMSA_id:106236 AY341440.1 Photobacterium mandapamensis str. PL-721 prokMSA_id:106395 AY341441.1 Photobacterium mandapamensis str. ATCC 27561 prokMSA_id:106555 AY341442.1 Photobacterium mandapamensis str. ATCC 33981 prokMSA_id:107740 AY204490.1 Photobacterium leiognathi str. lbind1.1 2.43.5.23.1.1.8531 OTU 8 seqs prokMSA_id:9184 AJ132227.1 Vibrio wodanis str. NVI 88/441T prokMSA_id:20390 AF323992.1 Vibrio logei str. AHL Vs15 prokMSA_id:33640 AJ437616.1 Vibrio logei str. NCIMB 2252 prokMSA_id:65248 AJ278426.1 Vibrio sp. str. Torgnes 1 prokMSA_id:103404 AY292949.1 Vibrio fischeri str. SI1E prokMSA_id:106153 AY292932.1 Vibrio logei str. 15382 prokMSA_id:106318 AY292933.1 Vibrio logei str. 35077 prokMSA_id:106476 AY292934.1 Vibrio logei str. SR181 2.43.5.23.1.1.8543 OTU 1 seq prokMSA_id:50075 AF343931.1 Vibrio sp. NBF10 2.43.5.23.1.1.8589 OTU 6 seqs prokMSA_id:17434 AB038029.1 Vibrio sp. str. OM02 prokMSA_id:23581 AJ310687.1 smoked salmon clone 249 prokMSA_id:25142 AJ310690.1 smoked salmon clone 272 prokMSA_id:28001 AJ310688.1 smoked salmon clone 253 prokMSA_id:38260 AJ310689.1 smoked salmon clone 247 prokMSA_id:39199 AJ310686.1 smoked salmon clone 334 2.43.5.23.1.1.8608 OTU 2 seqs prokMSA_id:26819 AF465395.1 Vibrio sp. str. UST991130-007 prokMSA_id:82011 AY217772.1 Vibrio sp. str. BLI-41 2.43.5.23.1.1.8665 OTU 82 seqs prokMSA_id:9180 X74725.1 Vibrio tubiashi prokMSA_id:9196 X74723.1 Vibrio proteolyticus prokMSA_id:9205 X74692.1 Vibrio campbellii prokMSA_id:9207 AF094701.1 Vibrio sp. str. Lu1 prokMSA_id:9208 AB000390.1 Vibrio halioticoli str. IAM14596T prokMSA_id:9209 AB000391.1 Vibrio halioticoli str. IAM14597 prokMSA_id:9210 AB000392.1 Vibrio halioticoli str. IAM14598 prokMSA_id:9214 X74693.1 Vibrio carchariae prokMSA_id:9215 AF134581.1 Vibrio harveyi prokMSA_id:9216 AF094702.1 Vibrio sp. str. Lu8 prokMSA_id:9219 X56575.1 Vibrio campbellii prokMSA_id:9223 X74691.1 Vibrio alginolyticus prokMSA_id:9226 X56576.1 Vibrio alginolyticus prokMSA_id:9227 X74721.1 Vibrio parahaemolyticus prokMSA_id:9229 AF064637.1 Vibrio sp. str. NAP-4 prokMSA_id:9230 X74714.1 Vibrio natriegens prokMSA_id:9233 X99761.1 Vibrio mytili prokMSA_id:9234 X74690.1 Vibrio alginolyticus prokMSA_id:9238 X56581.1 Vibrio natriegens prokMSA_id:9240 X74720.1 Vibrio parahaemolyticus prokMSA_id:9243 X74706.1 Vibrio harveyi prokMSA_id:19456 AF218244.1 Vibrio sp prokMSA_id:21967 AF284227.1 Vibrio sp. str. 73 prokMSA_id:24526 AF319769.1 Vibrio sp. Ex25 BV25Ex prokMSA_id:26876 AJ391193.1 Vibrio sp. str. AS-32 prokMSA_id:29344 AF319768.1 Vibrio sp. BB4 prokMSA_id:31661 AY035896.1 Vibrio campbellii str. L61 prokMSA_id:34170 AF410778.1 Vibrio sp. str. NLEP97-1598 prokMSA_id:36201 AF388388.1 Vibrio parahaemolyticus str. ATCC 17802 prokMSA_id:45699 AF369642.1 Vibrio sp. str. AB003 prokMSA_id:47824 AF388386.1 Vibrio parahaemolyticus str. ATCC 17802 prokMSA_id:48633 AF388389.1 Vibrio parahaemolyticus str. ATCC 17802 prokMSA_id:50883 AY046956.1 Vibrio harveyi str. M4 prokMSA_id:55336 AF513447.1 Vibrio alginolyticus str. LA6 prokMSA_id:59705 AB081772.1 Vibrio sp. str. No. 442 prokMSA_id:60045 AJ316187.1 Vibrio sp. str. R-14939 prokMSA_id:60376 AF513463.1 Vibrio proteolyticus str. PH8 prokMSA_id:66026 AY034144.1 Vibrio sp. str. C33 prokMSA_id:70114 AJ316181.1 Vibrio xuii str. R-15052 prokMSA_id:71300 AJ316168.1 Vibrio sp. str. R-14968 prokMSA_id:71462 AF284229.1 Vibrio sp. str. 01 prokMSA_id:72620 AJ316172.1 Vibrio brasiliensis str. LMG 20546 prokMSA_id:72695 AF246980.1 Vibrio sp. str. 98CJ11027 prokMSA_id:72857 AJ316202.1 Vibrio sp. str. LMG 20547 prokMSA_id:72939 AJ312382.1 Vibrio harveyi str. LMG 19643 prokMSA_id:73398 AF410779.1 Vibrio sp. str. NLEP97-1599 prokMSA_id:73534 AJ316169.1 Vibrio sp. str. LMG 19270 prokMSA_id:74377 AJ316206.1 Vibrio sp. str. LMG 19970 prokMSA_id:74411 AJ316205.1 Vibrio sp. str. LMG 19972 prokMSA_id:81625 NC_004603.1 Vibrio parahaemolyticus RIMD 2210633 prokMSA_id:82255 NC_004605.1 Vibrio parahaemolyticus RIMD 2210633 prokMSA_id:83444 AY245185.1 Vibrio parahaemolyticus 15 prokMSA_id:84052 AY257971.1 Vibrio gallicus str. CIP 107864; HT 1-3 prokMSA_id:84057 AY245188.1 Vibrio parahaemolyticus L21 prokMSA_id:84064 AY245195.1 Vibrio vulnificus 7 prokMSA_id:84254 AF500207.1 Vibrio sp. str. CJ11052 prokMSA_id:84441 AY245178.1 Vibrio parahaemolyticus 13 prokMSA_id:84838 AY245186.1 Vibrio parahaemolyticus 17 prokMSA_id:84937 AY257975.1 Vibrio gallicus str. CIP 107867; HT 3-3 prokMSA_id:84964 AY257974.1 Vibrio gallicus str. CIP 107866; HT 2-6 prokMSA_id:85262 AY245187.1 Vibrio parahaemolyticus 18 prokMSA_id:85428 AY257973.1 Vibrio gallicus str. CIP 107865; HT 1-12 prokMSA_id:86266 AY245190.1 Vibrio parahaemolyticus 21 prokMSA_id:86444 AY257972.1 Vibrio gallicus str. CIP 107863; HT 2-1 prokMSA_id:86641 AY245189.1 Vibrio vulnificus 9 prokMSA_id:86674 AY245180.1 Vibrio vulnificus 4 prokMSA_id:91201 AY332564.1 Vibrio harveyi str. EcGY020401 prokMSA_id:91969 AY332565.1 Vibrio harveyi str. EcGS020802 prokMSA_id:93965 AJ580582.1 Vibrio pommerensis prokMSA_id:99376 AY750575.1 Vibrio harveyi str. NCIMB1280T prokMSA_id:99532 AY750576.1 Vibrio harveyi str. LMG4404T prokMSA_id:99688 AY750577.1 Vibrio harveyi str. S20 prokMSA_id:99852 AY750578.1 Vibrio harveyi str. S35 prokMSA_id:101266 AY426980.1 Vibrio ezurae str. HDS1-1 prokMSA_id:101436 AY426981.1 Vibrio ezurae str. HDS1-2 prokMSA_id:101603 AY426982.1 Vibrio ezurae str. HDV1-1 prokMSA_id:105604 AY264924.1 Vibrio harveyi str. UQM 2849 prokMSA_id:106361 AY426978.1 Vibrio halioticoli subsp. discus str. HDD1-2 prokMSA_id:106527 AY426979.1 Vibrio halioticoli subsp. discus str. HDD3-1 prokMSA_id:109445 AY700616.1 Australia: Great Barrier Reef clone PDC-OTU1 prokMSA_id:109448 AY700621.1 Australia: Great Barrier Reef clone PDC-OTU2 prokMSA_id:112495 AY911397.1 Vibrio harveyi str. SW-4 2.43.5.23.1.1.8669 OTU 1 seq prokMSA_id:9280 AF159670.1 related to Vibrio group 2.43.5.23.1.1.8694 OTU 1 seq prokMSA_id:34147 AF465377.1 Vibrio sp. str. UST991130-023 2.43.5.23.1.1.8699 OTU 1 seq prokMSA_id:21048 AB041292.1 clone ECS22 2.43.5.23.1.1.8707 OTU 1 seq prokMSA_id:60374 AF513465.1 Vibrio sp. str. PH19 2.43.5.23.1.1.8723 OTU 1 seq prokMSA_id:9130 AF118021.1 Vibrio calviensis str. RE35F/12 2.43.5.23.1.1.8749 OTU 1 seq prokMSA_id:9142 AF057016.1 Salinivibrio costicola subsp. vallismortis str. DSM 8285 subsp. 2.43.5.23.1.1.8764 OTU 1 seq prokMSA_id:9170 X74719.1 Vibrio orientalis 2.43.5.23.1.1.8785 OTU 1 seq prokMSA_id:9175 X76335.1 Vibrio fluvialis 2.43.5.23.1.1.8798 OTU 45 seqs prokMSA_id:9254 X74724.1 Vibrio splendidus prokMSA_id:9270 AJ132987.1 Vibrio sp. A053 prokMSA_id:9272 AJ002567.1 Marine (isolate DPT1.2) clone prokMSA_id:16828 AJ278881.1 Vibrio lentus prokMSA_id:24584 AF172840.1 Vibrio aestuarianus str. KT0901 prokMSA_id:26431 AY035895.1 Vibrio sp. str. ED4 prokMSA_id:26484 AB038024.1 Vibrio sp. str. EN280 prokMSA_id:26716 AF242271.1 Vibrio sp. str. Da2 prokMSA_id:31562 AF242273.1 Vibrio sp. str. Sr3 prokMSA_id:43627 AB038026.1 Vibrio sp. str. OC25 prokMSA_id:45173 AB038025.1 Vibrio sp. str. TK327 prokMSA_id:46227 AF242272.1 Vibrio sp. str. Da4 prokMSA_id:46685 AF388391.1 Vibrio sp. str. 3d prokMSA_id:49860 AF242274.1 Vibrio sp. str. Sk1 prokMSA_id:51176 AJ278880.1 Vibrio lentus str. 3OM21 CECT 5293 DSM 13759 prokMSA_id:52051 AF388393.1 Vibrio sp. str. 3d prokMSA_id:54302 AF388394.1 Vibrio sp. str. 3d prokMSA_id:55282 AJ515225.1 Vibrio splendidus str. A053 prokMSA_id:56212 AJ515224.1 Vibrio splendidus str. PMV18 prokMSA_id:67338 AF388392.1 Vibrio sp. str. 3d prokMSA_id:69386 AJ515228.1 Vibrio splendidus str. VS6turb prokMSA_id:69668 AJ515229.1 Vibrio splendidus str. LMG 4042 prokMSA_id:69712 AJ515230.1 Vibrio splendidus str. LMG 4042 prokMSA_id:72001 AJ515223.1 Vibrio splendidus str. A515 prokMSA_id:72609 AF456335.1 Vibrio sp. str. LT73 prokMSA_id:73369 AF456338.1 Vibrio sp. str. LT21 prokMSA_id:73749 AJ244774.1 MM_2419 prokMSA_id:73914 AJ515227.1 Vibrio splendidus str. VC1 prokMSA_id:74026 AJ515222.1 Vibrio splendidus str. A515 prokMSA_id:74168 AJ316200.1 Vibrio sp. str. R-3884 prokMSA_id:74614 AJ515221.1 Vibrio splendidus str. LT06 prokMSA_id:78737 AY129277.1 Vibrio splendidus str. LP1 prokMSA_id:78974 AY174869.1 Vibrio sp. str. QY101 prokMSA_id:82520 AF539782.1 Vibrio sp. str. RE1-3 prokMSA_id:83795 AF539779.1 Pseudoalteromonas sp. str. R12 prokMSA_id:85836 AF539781.1 Pseudoalteromonas sp. str. RE1-12a prokMSA_id:85910 AY262020.1 Vibrio sp. str. WYB prokMSA_id:86573 AY262019.1 Vibrio sp. str. YWA prokMSA_id:99997 AY654748.1 Oculina mucus isolate 16 prokMSA_id:100240 AY654834.1 Oculina mucus isolate 97 prokMSA_id:106797 AY627367.1 marine clone AY627367 prokMSA_id:110911 AJ874367.1 Vibrio splendidus str. 03/012 prokMSA_id:110950 AJ874364.1 Vibrio splendidus str. 01/246 prokMSA_id:111020 AJ874363.1 Vibrio splendidus str. 01/189 prokMSA_id:111259 AJ874360.1 Vibrio splendidus str. 01/104 2.43.5.23.1.1.8887 OTU 9 seqs prokMSA_id:9133 M98446.1 "Vibrio aspartigenicus" prokMSA_id:9134 X74699.1 Salinivibrio costicola prokMSA_id:9136 X95527.1 Salinivibrio costicola str. NCIMB 701-T prokMSA_id:9137 X95528.1 Salinivibrio costicola subsp. pathovar str. AV3 prokMSA_id:9138 X95531.1 Salinivibrio costicola subsp. pathovar str. cepa 6 prokMSA_id:9139 X95529.1 Salinivibrio costicola subsp. pathovar str. E-367 prokMSA_id:9140 X95532.1 Salinivibrio costicola subsp. pathovar str. H-178 prokMSA_id:9141 X95530.1 Salinivibrio costicola subsp. pathovar str. V-15 prokMSA_id:100674 AJ640132.1 Salinivibrio sp. 18AG 2.43.5.23.1.1.8888 OTU 21 seqs prokMSA_id:9247 X74710.1 Vibrio mediterranei prokMSA_id:9248 AF007115.1 Vibrio shilonii str. AK-1 prokMSA_id:9268 Z31657.1 Vibrio splendidus prokMSA_id:9283 Y13830.1 Vibrio pectenicida str. Ifremer A365 prokMSA_id:9286 U46579.1 Vibrio scophthalmi prokMSA_id:9288 X74689.1 Vibrio aestuarianus prokMSA_id:40425 AY035897.1 Listonella anguillarum str. M3 prokMSA_id:48368 AJ421445.1 Vibrio ichthyoenteri str. DSM 14397T prokMSA_id:62643 AB089204.1 Vibrio sp. str. No.6 prokMSA_id:70635 AY069970.1 Listonella anguillarum serovar O1 prokMSA_id:74258 AY069971.1 Listonella anguillarum serovar O2a prokMSA_id:83112 AY177719.1 Vibrionaceae T16 prokMSA_id:85619 AF539783.1 Vibrio sp. str. RE2-8 prokMSA_id:101479 AJ845012.1 Vibrio aestuarianus str. 01/067 prokMSA_id:101808 AJ845014.1 Vibrio aestuarianus str. 01/151 prokMSA_id:101965 AJ845015.1 Vibrio aestuarianus str. 01/308 prokMSA_id:102121 AJ845016.1 Vibrio aestuarianus str. 01/312 prokMSA_id:102421 AY654800.1 Oculina mucus isolate 62 prokMSA_id:107846 BA000032.2 Vibrio parahaemolyticus str. O3:K6 prokMSA_id:109227 AB180395.1 Vibrio sp. str. No. 74 prokMSA_id:112524 AY911395.1 Vibrio shilonii str. SW-2 2.43.5.23.1.1.8912 OTU 1 seq prokMSA_id:9318 AF159667.1 related to Vibrio group 2.43.5.23.1.1.8914 OTU 1 seq prokMSA_id:9319 AF124055.3 Vibrio aerogenes str. FG1; CCRC 17041; ATCC 700797 2.43.5.23.1.1.8964 OTU 1 seq prokMSA_id:47306 AF462458.1 Vibrio ruber str. VR1; JCM 11486; CCRC 17186 2.43.5.23.1.1.8999 OTU 37 seqs prokMSA_id:9157 D25307.1 Photobacterium angustum prokMSA_id:9163 AB000278.1 Photobacterium iliopiscarium str. ATCC51760 prokMSA_id:9165 Z19107.1 Photobacterium phosphoreum prokMSA_id:9167 X74687.1 Photobacterium phosphoreum prokMSA_id:9168 D25310.1 Photobacterium phosphoreum prokMSA_id:20048 AB038032.1 Photobacterium sp. str. HAR72 prokMSA_id:22086 AB016271.1 Vibrio sp. str. NIBH P2K5 prokMSA_id:38706 AB038031.1 Photobacterium sp. str. HAR23 prokMSA_id:67191 AF497998.1 Photobacterium sp. str. D151 prokMSA_id:83679 AB095446.1 Photobacterium phosphoreum str. YS4-7 prokMSA_id:92082 AY345889.1 Photobacterium phosphoreum AK1 prokMSA_id:92256 AY345891.1 Photobacterium phosphoreum AK6 prokMSA_id:92792 AY345893.1 Photobacterium phosphoreum AK8 prokMSA_id:102317 AY341437.1 Photobacterium phosphoreum str. ATCC 11040 prokMSA_id:102475 AY341438.1 Photobacterium phosphoreum str. NCMB 844 prokMSA_id:102631 AY341439.1 Photobacterium phosphoreum str. pjapo.1.1 prokMSA_id:102658 AY292944.1 Photobacterium leiognathi str. LN101 prokMSA_id:102791 AB166847.1 Photobacterium phosphoreum str. 120-1 prokMSA_id:103106 AY292947.1 Photobacterium leiognathi str. RM1 prokMSA_id:103798 AJ746357.1 Photobacterium phosphoreum str. NCIMB 13478 (P15) prokMSA_id:103942 AJ746358.1 Photobacterium phosphoreum str. NCIMB 13479 (P30) prokMSA_id:104092 AJ746359.1 Photobacterium phosphoreum str. P50 prokMSA_id:104419 AY435156.1 Photobacterium phosphoreum str. RHE-01 prokMSA_id:106416 AB179540.1 Photobacterium phosphoreum str. IFO 13896 prokMSA_id:107197 AY292951.1 Photobacterium leiognathi str. SN2B prokMSA_id:111585 AY642163.1 Photobacterium phosphoreum str. calba.2.1 prokMSA_id:111666 AY642160.1 Photobacterium phosphoreum str. NZ-11D prokMSA_id:111692 AY642161.1 Photobacterium phosphoreum str. calba.1.1 prokMSA_id:111705 AY642162.1 Photobacterium phosphoreum str. calba.1.2 prokMSA_id:111804 AY642167.1 Photobacterium phosphoreum str. calba.4.1 prokMSA_id:111825 AY642165.1 Photobacterium phosphoreum str. calba.3.1 prokMSA_id:111940 AY642169.1 Photobacterium phosphoreum str. calba.5.1 prokMSA_id:112118 AY642170.1 Photobacterium phosphoreum str. calba.5.9 prokMSA_id:112196 AY642166.1 Photobacterium phosphoreum str. calba.3.2 prokMSA_id:112220 AY643710.1 Photobacterium iliopiscarium str. ATCC 51760T prokMSA_id:112325 AY642168.1 Photobacterium phosphoreum str. calba.4.2 prokMSA_id:112331 AY642164.1 Photobacterium phosphoreum str. calba.2.2 2.43.5.23.1.1.9066 OTU 1 seq prokMSA_id:9201 X74717.1 Vibrio nigripulchritudo 2.43.5.23.1.1.9083 OTU 17 seqs prokMSA_id:9143 X78105.1 Photobacterium damsela prokMSA_id:9144 X78106.1 Photobacterium damsela prokMSA_id:9145 Y18496.1 Photobacterium damselae subsp. Piscicida str. Kre4 prokMSA_id:9147 X74700.1 Listonella damsela prokMSA_id:9148 AB026844.1 Photobacterium damselae subsp. piscicida str. KP9038 subsp. prokMSA_id:9149 D25308.1 Photobacterium histaminum prokMSA_id:20588 AB032015.1 Photobacterium subsp. damselae str. ATCC33539 subsp. prokMSA_id:41265 AB032014.1 Photobacterium subsp. damselae str. JCM8968 subsp. prokMSA_id:95505 AY147858.1 Photobacterium damselae subsp. piscicida str. K12 prokMSA_id:96255 AY147857.1 Photobacterium damselae subsp. piscicida str. CVD3 prokMSA_id:97403 AY147861.1 Photobacterium subsp. damselae str. CCRC15428 prokMSA_id:97821 AY147859.1 Photobacterium damselae subsp. piscicida str. I736 prokMSA_id:98163 AY147856.1 Photobacterium damselae subsp. piscicida str. CVD1 prokMSA_id:98324 AY147860.1 Photobacterium damselae subsp. piscicida str. PN510 prokMSA_id:99609 AJ784125.2 Photobacterium subsp. damselae ME3-09 prokMSA_id:103081 AB166849.1 Photobacterium damselae str. 25-1 prokMSA_id:111054 AY827492.1 Vibrio olivaceus str. HC010916A-1 2.43.5.23.1.1.9166 OTU 1 seq prokMSA_id:50709 AF366021.1 marine str. SWAT2 2.43.5.23.1.1.9174 OTU 1 seq prokMSA_id:30332 AF465363.1 Vibrio sp. str. UST991130-046 2.43.5.23.1.1.9192 OTU 1 seq prokMSA_id:42368 AB031616.1 clone TIHP302-30 2.43.5.23.1.1.9207 OTU 1 seq prokMSA_id:9246 Z19081.1 Anomalops katoptron symbiont 2.43.5.23.1.1.9223 OTU 1 seq prokMSA_id:83211 AY245191.1 Vibrio parahaemolyticus 22 2.43.5.23.1.1.9225 OTU 9 seqs prokMSA_id:9295 X76337.1 Vibrio cholerae prokMSA_id:9299 Z21856.1 Vibrio cholerae prokMSA_id:9301 X74694.1 Vibrio cholerae prokMSA_id:9306 X74713.1 Vibrio mimicus prokMSA_id:9308 X74695.1 Vibrio cholerae prokMSA_id:53406 NC_002505.1 Vibrio cholerae O1 biovar eltor str. N16961 prokMSA_id:103123 AY513500.1 Vibrio cholerae str. VC12-Ogawa prokMSA_id:103271 AY513501.1 Vibrio cholerae str. VC13-Janaba prokMSA_id:107344 AY292952.1 Vibrio cholerae 2.43.5.23.1.1.9333 OTU 1 seq prokMSA_id:9213 X56580.1 Vibrio parahaemolyticus 2.43.5.23.1.1.9425 OTU 1 seq prokMSA_id:9171 Z21731.1 Vibrio orientalis 2.43.5.23.1.1.9430 OTU 1 seq prokMSA_id:9244 Z19079.1 Photoblepharon palpebratus symbiont 2.43.5.23.1.1.9432 OTU 1 seq prokMSA_id:9245 Z19085.1 Photoblepharon palpebratus symbiont 2.43.5.23.1.1.9457 OTU 1 seq prokMSA_id:9249 Z19003.1 Kryptophanaron alfredi symbiont 2.43.5.23.1.1.9465 OTU 1 seq prokMSA_id:26621 AB031614.1 clone TIHP302-28 2.43.5.23.1.1.9478 OTU 1 seq prokMSA_id:9250 Z19080.1 Photoblepharon steinetzi symbiont 2.43.5.23.1.1.9512 OTU 1 seq prokMSA_id:9313 X74698.1 Vibrio cincinnatiensis 2.43.5.23.1.1.9516 OTU 1 seq prokMSA_id:9126 X74707.1 Vibrio hollisae 2.43.5.23.1.1.9517 OTU 1 seq prokMSA_id:9129 Z19105.1 Melanocetus johnsoni symbiont 2.43.5.23.1.1.9523 OTU 1 seq prokMSA_id:9131 Z19106.1 Cryptosaras couesi symbiont 2.43.5.23.1.1.9525 OTU 1 seq prokMSA_id:33548 AF465382.1 Vibrio sp. str. UST991130-028 2.43.5.23.1.1.9532 OTU 1 seq prokMSA_id:9322 X74712.1 Vibrio metschnikovii 2.43.5.23.1.1.9593 OTU 1 seq prokMSA_id:70729 AF284226.1 Vibrio sp. str. 05 2.43.5.23.1.1.9624 OTU 1 seq prokMSA_id:51068 AF343925.1 Vibrio sp. NBF4 2.43.5.23.1.1.9642 OTU 1 seq prokMSA_id:36478 AB059261.1 Photobacterium sp. str. PS11-6 2.43.5.24 Xanthomonadales 381 seqs 2.43.5.24.1 Xanthomonadaceae 381 seqs 2.43.5.24.1.1 sf_3 381 seqs 2.43.5.24.1.1.8210 OTU 1 seq prokMSA_id:16767 AF312222.1 South Africa: KwaZulu-Natal Province Pietermaritzburg clone Y17-8 bacterium 2.43.5.24.1.1.8271 OTU 1 seq prokMSA_id:50142 AJ307936.1 derived microbial 'pearl'- community clone sipK9 2.43.5.24.1.1.8297 OTU 1 seq prokMSA_id:18867 X92132.1 Lake Natron isolate 97NT4 2.43.5.24.1.1.8392 OTU 1 seq prokMSA_id:81039 AY218573.1 penguin droppings sediments clone KD2-14 2.43.5.24.1.1.8411 OTU 1 seq prokMSA_id:24744 AJ301567.1 Germany:Schlema/Alberoda clone GR-296.I.104 proteobacterium 2.43.5.24.1.1.8414 OTU 1 seq prokMSA_id:81488 AY218735.1 penguin droppings sediments clone KD5-24 2.43.5.24.1.1.8440 OTU 4 seqs prokMSA_id:7873 U51103.1 freshwater mud isolate BrG3 prokMSA_id:75052 AJ519985.1 Thermomonas fusca str. LMG 21736 prokMSA_id:77152 AJ519986.1 Thermomonas fusca str. LMG 21737 prokMSA_id:104477 AY532552.1 uranium-contaminated aquifer clone 1013-1-CG35 2.43.5.24.1.1.8453 OTU 1 seq prokMSA_id:7877 AJ012231.1 Pseudoxanthomonas broegbernensis str. B1616/1 2.43.5.24.1.1.8482 OTU 1 seq prokMSA_id:17177 AY049941.1 acidic forest soil isolate str. A40-1 2.43.5.24.1.1.8518 OTU 1 seq prokMSA_id:20263 AF308875.1 Arsenic resistant soil isolate str. 7-03 2.43.5.24.1.1.8538 OTU 1 seq prokMSA_id:7870 L24791.1 Xanthomonas campestris subsp. translucens 2.43.5.24.1.1.8563 OTU 4 seqs prokMSA_id:7875 AB008507.1 Pseudoxanthomonas japonensis str. 12-3 prokMSA_id:41720 AF273082.1 Pseudoxanthomonas mexicana str. AMX 26B prokMSA_id:62235 AY124375.1 Pseudoxanthomonas mexicana UR374_02 prokMSA_id:66929 AJ306770.1 DCP-dechlorinating consortium clone SHA-39 2.43.5.24.1.1.8573 OTU 1 seq prokMSA_id:27216 AJ318169.1 Waste-gas biofilter clone BIrii42 2.43.5.24.1.1.8577 OTU 186 seqs prokMSA_id:7795 U62646.1 Stenotrophomonas maltophilia str. MGB prokMSA_id:7800 AF017749.1 Stenotrophomonas maltophilia str. N4-15 prokMSA_id:7801 AB021392.1 Pseudomonas pictorum str. ATCC 23328T prokMSA_id:7803 AB021405.1 Pseudomonas hibiscicola str. ATCC 19867T prokMSA_id:7806 Y13836.1 Stenotrophomonas sp prokMSA_id:7807 AJ131114.1 Stenotrophomonas maltophilia str. LMG 957 prokMSA_id:7808 AJ131115.1 Stenotrophomonas maltophilia str. LMG 10991 prokMSA_id:7809 AJ131116.1 Stenotrophomonas maltophilia str. LMG 981 prokMSA_id:7810 AF068008.1 Stenotrophomonas maltophilia str. VUN 10010 prokMSA_id:7811 AF068009.1 Stenotrophomonas maltophilia str. VUN 10012 prokMSA_id:7812 AJ012229.1 Stenotrophomonas nitritireducens str. L2 prokMSA_id:7813 AJ012230.1 Stenotrophomonas nitritireducens str. B1910/29.1 prokMSA_id:7815 X95925.1 Stenotrophomonas maltophilia str. LMG 11114 prokMSA_id:7816 AF098637.1 Stenotrophomonas maltophilia str. BL prokMSA_id:7819 AJ131903.1 Stenotrophomonas maltophilia str. LMG 10879 prokMSA_id:7820 AJ131905.1 Stenotrophomonas maltophilia str. LMG 10882 prokMSA_id:7821 AJ131906.1 Stenotrophomonas maltophilia str. LMG 10883 prokMSA_id:7822 AJ131907.1 Stenotrophomonas maltophilia str. LMG 10989 prokMSA_id:7826 AB008509.1 Stenotrophomonas maltophilia str. ATCC 13637T prokMSA_id:7828 AF137357.1 Stenotrophomonas maltophilia str. VUN10075 prokMSA_id:7829 AJ131780.1 Stenotrophomonas maltophilia str. LMG 10851 prokMSA_id:7834 AJ131914.1 Stenotrophomonas maltophilia str. LMG 10853 prokMSA_id:7856 Y10764.1 Xanthomonas bromi str. LMG 947 T prokMSA_id:7857 Y10761.1 Xanthomonas vesicatoria str. LMG 911 T prokMSA_id:7858 X95921.1 Xanthomonas oryzae str. LMG 5047-T prokMSA_id:7861 X95922.1 Xanthomonas populi str. LMG 5743-T prokMSA_id:7862 Y10766.1 Xanthomonas sacchari str. LMG 471 T prokMSA_id:7866 Y10758.1 Xanthomonas pisi str. LMG 847 T prokMSA_id:7869 X95920.1 Xanthomonas fragariae str. LMG 708-T prokMSA_id:7871 X95919.1 Xanthomonas axonopodis str. LMG 538-T prokMSA_id:7872 X95917.1 Xanthomonas campestris str. LMG 568-T prokMSA_id:7874 AF188831.2 Xanthomonas pv. campestris str. B100 prokMSA_id:7876 AF000946.1 Xanthomonas pv. campestris str. Xc17 prokMSA_id:7878 Y10756.1 Xanthomonas melonis str. LMG 8670 T prokMSA_id:7879 X99299.1 Xanthomonas campestris str. LMG 876 prokMSA_id:7880 X99298.1 Xanthomonas campestris str. LMG 726 prokMSA_id:7883 Y10765.1 Xanthomonas codiaei str. LMG 8678 T prokMSA_id:7887 Y10757.1 Xanthomonas arboricola subsp. juglandis str. LMG 747 T prokMSA_id:7888 Y10760.1 Xanthomonas cucurbitae str. LMG T prokMSA_id:7889 Y10754.1 Xanthomonas hyacinthi str. LMG 739 T prokMSA_id:7890 Y10762.1 Xanthomonas cassavae str. LMG 673 T prokMSA_id:7891 Y10763.1 Xanthomonas theicola str. LMG 8684 T prokMSA_id:7892 Y10759.1 Xanthomonas hortorum str. LMG 733T prokMSA_id:7894 X95918.1 Xanthomonas albilineans str. LMG 494-T prokMSA_id:7896 Y10755.1 Xanthomonas vasicola subsp. holcicola str. LMG 736 T prokMSA_id:7897 AF159581.1 Xanthomonas pv. campestris str. L2 prokMSA_id:7898 AB021399.1 Pseudomonas cissicola str. ATCC 33616T prokMSA_id:7901 X99297.1 Xanthomonas campestris str. LMG 682 prokMSA_id:16822 AF208315.1 Xanthomonas cynarae str. CFBP4188 prokMSA_id:16875 AY038629.1 lacustrine subsurface sediment clone GL178.1 prokMSA_id:17727 AB039329.1 Pseudoxanthomonas sp. str. M1-2 prokMSA_id:17961 AF368754.1 Stenotrophomonas sp. str. 3A3C prokMSA_id:18200 AJ295673.1 Stenotrophomonas maltophilia prokMSA_id:18402 AF100734.1 Stenotrophomonas maltophilia VUN10075 prokMSA_id:18889 AY038626.1 lacustrine subsurface sediment clone GL182.12 prokMSA_id:20575 AY038627.1 lacustrine subsurface sediment clone GL182.13 prokMSA_id:22089 AF408331.1 Stenotrophomonas sp. clone KL-59-7-5 prokMSA_id:22707 AJ318138.1 Waste-gas biofilter clone BIgi7 prokMSA_id:22966 AF408332.1 spacecraft assembly facility clone KL-15-2-16 prokMSA_id:23220 AJ293474.1 Stenotrophomonas maltophilia str. e-a22 prokMSA_id:27006 AF385546.1 purified crevicular epithelial cells clone AY088 prokMSA_id:29468 AF335549.1 Xanthomonas sp. str. 36A prokMSA_id:31789 AF479790.1 Pseudoxanthomonas taiwanensis str. CB-225 prokMSA_id:34396 AF100735.1 Stenotrophomonas maltophilia VUN10035 prokMSA_id:36460 AY038628.1 lacustrine subsurface sediment clone GL178.11 prokMSA_id:38163 AF273079.1 Stenotrophomonas acidaminiphila str. ATCC 700917 prokMSA_id:38863 AY038625.1 lacustrine subsurface sediment clone GL178.2 prokMSA_id:38887 AF417866.1 Stenotrophomonas maltophilia prokMSA_id:39016 AB074736.1 Japan:Lake Biwa isolate str. S-N(nd)-23A prokMSA_id:39908 AY038624.1 lacustrine subsurface sediment clone GL184.10 prokMSA_id:40651 AJ300772.1 Stenotrophomonas sp. str. LMG 19833 prokMSA_id:41363 AF408333.1 spacecraft assembly facility clone KL-59-7-1 prokMSA_id:43081 AB074713.1 Japan:Lake Biwa isolate str. S-(2)-11 prokMSA_id:43218 AJ293467.1 Stenotrophomonas maltophilia str. c5 prokMSA_id:43406 AF273080.1 Stenotrophomonas acidaminiphila str. AMX19 prokMSA_id:43441 AF394168.1 simulated blackwater bioreactor isolate str. BW3 bacterium prokMSA_id:43546 AJ293468.1 Stenotrophomonas maltophilia str. c6 prokMSA_id:45132 AY038620.1 lacustrine subsurface sediment clone GL182.22 prokMSA_id:45466 AY038621.1 lacustrine subsurface sediment clone GL184.24 prokMSA_id:45548 AJ293465.1 Stenotrophomonas maltophilia str. e-p19 prokMSA_id:46966 AJ293472.1 Stenotrophomonas maltophilia str. e-a23 prokMSA_id:47527 AJ295672.1 Stenotrophomonas maltophilia prokMSA_id:48518 AB039336.1 Pseudoxanthomonas sp. str. M1-7 prokMSA_id:48694 AB039330.1 Pseudoxanthomonas sp. str. M1-3 prokMSA_id:49109 AY038622.1 lacustrine subsurface sediment clone GL184.21 prokMSA_id:49849 AJ295421.1 rape rhizosphere tsb011 prokMSA_id:50487 AJ293469.1 Stenotrophomonas maltophilia str. c20 prokMSA_id:50679 AY053488.1 gas hydrate clone AT425_EubD3 prokMSA_id:51923 AY050496.1 Stenotrophomonas maltophilia str. SB5 prokMSA_id:52247 AJ293471.1 Stenotrophomonas maltophilia str. e-a1 prokMSA_id:52510 AF408330.1 Stenotrophomonas sp. clone KL-15-2-22 prokMSA_id:53196 AY038623.1 lacustrine subsurface sediment clone GL184.31 prokMSA_id:55295 AF529326.1 PCE-contaminated site clone CLi132 prokMSA_id:55391 AE012505.1 Xanthomonas pv. campestris str. ATCC 33913 pv. prokMSA_id:57805 AF548381.1 SG-3 complete isolate str. SG-3; NRRL B-30043 prokMSA_id:59334 AF502234.1 EBPR sludge lab scale clone HP1B89 prokMSA_id:59558 AY135649.1 Xanthomonas axonopodis pv. allii str. CFBP6369 pv. prokMSA_id:59922 AY133070.1 TCE-contaminated site clone ccs2170 prokMSA_id:60353 AF534190.1 soil clone Caf5 prokMSA_id:60387 AF513452.1 Xanthomonas group isolate str. LA37 prokMSA_id:61805 AF529355.1 PCE-contaminated site clone CLs90 prokMSA_id:61818 AF529349.1 PCE-contaminated site clone CLs71 prokMSA_id:61900 AJ244722.1 France:Nice isolate str. V4.BO.41 = MM_2937 V4.BO.41 prokMSA_id:62418 AF529092.1 trichloroethene-contaminated site clone FTL14 proteobacterium prokMSA_id:62420 AF529094.1 trichloroethene-contaminated site clone FTL204 proteobacterium prokMSA_id:64373 NC_003919.1 Xanthomonas axonopodis pv. citri str. 306 prokMSA_id:64761 AJ319565.1 salt-crystal clone Poland-16-QC prokMSA_id:65384 AF511522.1 Stenotrophomonas maltophilia SaO5lg prokMSA_id:65388 AF511515.1 Stenotrophomonas maltophilia SaO5sm prokMSA_id:65525 NC_003902.1 Xanthomonas campestris pv. campestris str. ATCC 33913 prokMSA_id:66133 AE012082.1 Xanthomonas axonopodis pv. citri prokMSA_id:66134 AE012039.1 Xanthomonas axonopodis pv. citri str. 306 prokMSA_id:66211 AE012540.1 Xanthomonas pv. campestris str. ATCC 33913 pv. prokMSA_id:68652 AY081992.1 atrazine-catabolizing microbial absence methanol clone KRA30-21 prokMSA_id:68800 AF442743.1 Xanthomonas axonopodis pv. citri str. MA prokMSA_id:68801 AF442744.1 Xanthomonas axonopodis pv. citri str. Lw prokMSA_id:68803 AF442740.1 Xanthomonas axonopodis pv. aurantifolii prokMSA_id:68804 AF442739.1 Xanthomonas axonopodis pv. aurantifolii str. X84 pv. prokMSA_id:70550 AF280866.1 bioreactor clone mle1-45 prokMSA_id:70857 AF100733.1 Stenotrophomonas maltophilia VUN10003 prokMSA_id:71314 AJ306833.1 Stenotrophomonas maltophilia ON2 prokMSA_id:71585 AF100732.1 Stenotrophomonas maltophilia VUN10002 prokMSA_id:72795 AF427039.1 Pseudoxanthomonas taiwanensis str. CB-226 prokMSA_id:73182 AF290420.1 Xanthomonas campestris 19316a prokMSA_id:73868 AF309810.1 synthetic wastewater tmbr11-3 complete clone wastewater prokMSA_id:74268 AF214643.1 Nitrogen-fixing isolate str. MAGDE3 prokMSA_id:74521 AJ293473.1 Stenotrophomonas maltophilia str. e-p13 prokMSA_id:74547 AJ243605.1 Stenotrophomonas sp prokMSA_id:76525 AJ519989.1 Thermomonas brevis str. LMG 21746 prokMSA_id:77719 AB074615.1 pea aphid symbiont clone APe9_10 prokMSA_id:78291 AB074643.1 pea aphid symbiont clone APe4_53 prokMSA_id:78802 AJ534843.1 Stenotrophomonas sp. DW100 prokMSA_id:79389 AB101445.1 Xanthomonas axonopodis str. S11 prokMSA_id:81159 AY169434.1 Stenotrophomonas maltophilia prokMSA_id:82333 AY169417.1 Stenotrophomonas maltophilia prokMSA_id:83056 AY247064.1 Xanthomonas translucens pv. graminis prokMSA_id:85823 AY253329.1 Xanthomonas translucens pv. poae prokMSA_id:86511 AY230768.1 Paenibacillus sanguinis str. Smarlab BioMol-2301083 prokMSA_id:86987 AY288081.1 Xanthomonas axonopodis pv. vesicatoria str. CNPH411 prokMSA_id:87040 AY288080.1 Xanthomonas vesicatoria str. CNPH345 prokMSA_id:87180 AY288082.1 Xanthomonas gardneri str. CNPH467 prokMSA_id:87353 AY288083.1 Xanthomonas gardneri str. CNPH496 prokMSA_id:91305 AY345544.1 Lake Wai'ele'ele water clone LWSR-59 prokMSA_id:98899 AY571839.1 hydrocarbon-contaminated soil clone 436B prokMSA_id:99262 AY572961.1 Xanthomonas translucens pv. poae str. ATCC 33804 prokMSA_id:99607 AY689031.1 Xanthomonas sp. str. 3C_3 prokMSA_id:99791 AY686710.1 Pseudoxanthomonas johnstonii str. JA40 prokMSA_id:100609 AY576640.1 Xanthomonas axonopodis pv. dieffenbachiae str. LMG7400 prokMSA_id:100760 AY576641.1 Xanthomonas axonopodis pv. dieffenbachiae str. LMG695 prokMSA_id:100921 AY576642.1 Xanthomonas axonopodis pv. dieffenbachiae str. ATCC 23379; LMG 7399 prokMSA_id:101030 AB183423.1 Stenotrophomonas sp. str. MFC-C prokMSA_id:101082 AY576643.1 Xanthomonas axonopodis pv. dieffenbachiae str. X1705 prokMSA_id:101244 AY576644.1 Xanthomonas axonopodis pv. dieffenbachiae str. X1708 prokMSA_id:101405 AY576645.1 Xanthomonas axonopodis pv. dieffenbachiae str. X1688 prokMSA_id:101579 AY576646.1 Xanthomonas axonopodis pv. dieffenbachiae str. X481 prokMSA_id:101756 AY576647.1 Xanthomonas axonopodis pv. dieffenbachiae str. X642 prokMSA_id:101916 AY576648.1 Xanthomonas axonopodis pv. dieffenbachiae str. X195 prokMSA_id:102054 AB180662.1 Stenotrophomonas sp. str. Toyama-1 prokMSA_id:102067 AY576649.1 Xanthomonas axonopodis pv. syngonii str. X1674 prokMSA_id:102209 AJ619045.1 Brewery bottling plant clone MTAC25 prokMSA_id:102767 AJ619061.1 Brewery bottling plant clone MTAE42 prokMSA_id:102834 AY571841.1 Xanthomonas sp. 35/23 prokMSA_id:103042 AY040676.1 thermophilic methanol-utilizing producing yel pigment isolate str. S072 prokMSA_id:103189 AY040677.1 thermophilic methanol-utilizing producing brown pigment isolate str. S619 prokMSA_id:103339 AY605124.1 Xanthomonas campestris pv. zantedeschiae str. A5 prokMSA_id:103980 AY604178.1 Xanthomonas campestris pv. coriandri str. TC3 prokMSA_id:105273 AY550264.1 Pseudoxanthomonas daejeonensis str. TR6 prokMSA_id:105665 AY576650.1 Xanthomonas axonopodis pv. syngonii str. X430 prokMSA_id:105726 AY576638.1 Xanthomonas axonopodis pv. dieffenbachiae str. LMG7484 prokMSA_id:105854 AY663436.1 Stenotrophomonas sp. str. H2 prokMSA_id:105873 AY576639.1 Xanthomonas axonopodis pv. dieffenbachiae str. LMG8664 prokMSA_id:105970 AY576652.1 Xanthomonas axonopodis pv. syngonii str. LMG9055 prokMSA_id:106800 AB186976.1 Mariana trough hydrothermal vent water 0.2micro-m filterable fraction clone MT-NB16 prokMSA_id:106899 AJ619053.1 Brewery bottling plant clone MTAD30 prokMSA_id:106950 AY484506.1 Stenotrophomonas maltophilia prokMSA_id:106995 AY725257.1 Ureaplasma urealyticum prokMSA_id:107150 AY725258.1 decayed velvetleaf seed clone S1-3-CL12 prokMSA_id:107206 AF409004.1 Stenotrophomonas sp. str. Ellin162 prokMSA_id:107297 AY725259.1 decayed velvetleaf seed clone S1-3-CL17 prokMSA_id:107794 AB114624.1 rice plant clone ER-27 prokMSA_id:108258 AJ811695.1 Xanthomonas campestris pv. poinsettiicola str. R-22578 prokMSA_id:108330 AY770958.1 water injection well Dagang oilfield clone W18 prokMSA_id:108803 AB193886.1 obtained Mariana Trough hydrothermal vent water 0.2 micro-m-filterable fraction clone MT793-NB11 prokMSA_id:111718 NC_006834.1 Xanthomonas pv. oryzae str. KACC10331 prokMSA_id:112369 AE013598.1 Xanthomonas pv. oryzae str. KACC10331 prokMSA_id:114108 AJ884485.1 Stenotrophomonas sp. str. dune M2-2 2.43.5.24.1.1.8612 OTU 1 seq prokMSA_id:44682 AJ252682.1 Rhizosphere soil RSC-II-42 () clone RSC-II-42 2.43.5.24.1.1.8616 OTU 1 seq prokMSA_id:71744 AY038719.1 epilithon clone TAF-A205 (E49) 2.43.5.24.1.1.8620 OTU 1 seq prokMSA_id:43741 AJ296563.1 uranium mining mill tailing clone GR-Sh1-148 GR-Sh1-148 2.43.5.24.1.1.8622 OTU 1 seq prokMSA_id:64660 AF467297.1 Xanthomonas sp. clone burs_22 2.43.5.24.1.1.8680 OTU 1 seq prokMSA_id:7884 AB008508.1 ultramicrobacterium str. DY01 2.43.5.24.1.1.8682 OTU 1 seq prokMSA_id:7885 AB021391.1 Pseudomonas boreopolis str. ATCC 33662T 2.43.5.24.1.1.8689 OTU 45 seqs prokMSA_id:26239 AB074730.1 Japan:Lake Biwa isolate str. S-N(1)-6B prokMSA_id:31970 AF250415.2 Rhodanobacter sp. str. D46 prokMSA_id:39014 AB074734.1 Japan:Lake Biwa isolate str. S-N(2)-25A prokMSA_id:63037 AY122309.1 denitrifying J(A2) prokMSA_id:63045 AY122297.1 denitrifying J(A1) prokMSA_id:63047 AY122296.1 denitrifying I(A1) prokMSA_id:68655 AY081991.1 atrazine-catabolizing microbial absence methanol clone KRA30-20 prokMSA_id:71415 AJ311653.1 Fulvimonas soli str. LMG 19981T prokMSA_id:74583 AY122310.1 denitrifying L(A2) prokMSA_id:77470 AY139001.1 water fern associated clone pIF16S1-2 prokMSA_id:77578 AB074599.1 pea aphid symbiont clone APe2_19 prokMSA_id:78230 AB074598.1 pea aphid symbiont clone APe2_13 prokMSA_id:81095 AY218671.1 clone KD9-60 prokMSA_id:81116 AY218663.1 clone KD9-21 prokMSA_id:81191 AY218693.1 penguin droppings sediments clone KD8-79 prokMSA_id:81358 AY218713.1 penguin droppings sediments clone KD7-52 prokMSA_id:81396 AY218698.1 penguin droppings sediments clone KD8-97 prokMSA_id:81522 AY218670.1 penguin droppings sediments clone KD9-56 prokMSA_id:81676 AY218723.1 penguin droppings sediments clone KD5-100 prokMSA_id:81711 AY218742.1 clone KD5-9 prokMSA_id:81880 AY218745.1 penguin droppings sediments clone KD6-1 prokMSA_id:82101 AY218606.1 penguin droppings sediments clone KD3-139 prokMSA_id:82208 AY218750.1 clone KD6-121 prokMSA_id:82232 AY218701.1 penguin droppings sediments clone KD7-103 prokMSA_id:82238 AY218740.1 penguin droppings sediments clone KD5-73 prokMSA_id:82264 AY218655.1 clone KD9-127 prokMSA_id:82308 AY218675.1 clone KD9-70 prokMSA_id:82392 AY218654.1 penguin droppings sediments clone KD9-126 prokMSA_id:82446 AY218712.1 clone KD7-5 prokMSA_id:83501 AF499898.1 human colonic mucosal biopsy clone ABLCf21 prokMSA_id:99030 AJ580498.1 Luteibactor rhizovicina str. LJ96 prokMSA_id:99191 AJ580499.1 Luteibactor rhizovicina str. LJ99 prokMSA_id:99205 AB117707.1 autotrophic nitrifying biofilm clone NB-03 prokMSA_id:101644 AY495959.1 Frateuria sp. str. WJ69 prokMSA_id:101731 AY544768.1 Aquamonas vora str. BPTSA20 prokMSA_id:102417 AB110496.1 Dyemonas todaii str. XD10 prokMSA_id:102574 AB110497.1 Dyemonas todaii str. XD22 prokMSA_id:102739 AB110498.1 Dyemonas todaii str. XD53 prokMSA_id:107836 AJ580497.1 Luteibactor rhizovicina str. LJ79 prokMSA_id:108235 AY785744.1 Luteibactor rhizovicina OUCZ70 prokMSA_id:112345 AY884571.1 Dyella soli str. BB4 prokMSA_id:113206 AY921729.1 farm soil adjacent to silage storage bunker clone AKYH1043 prokMSA_id:113315 AY921730.1 farm soil adjacent to silage storage bunker clone AKYH1295 prokMSA_id:114191 AY922074.1 farm soil adjacent to silage storage bunker clone AKYG891 prokMSA_id:114384 AY913255.1 forest soil clone DUNssu037 2.43.5.24.1.1.8717 OTU 1 seq prokMSA_id:50262 AF376025.1 Frateuria sp. str. NO-16 2.43.5.24.1.1.8793 OTU 1 seq prokMSA_id:7780 AJ010481.1 Frateuria aurantia str. IFO 3245 DSM 6220 2.43.5.24.1.1.8807 OTU 2 seqs prokMSA_id:7777 AF039167.1 Rhodanobacter lindaniclasticus str. RP5557 prokMSA_id:100598 L76222.1 Rhodanobacter lindaniclasticus 2.43.5.24.1.1.8824 OTU 1 seq prokMSA_id:7778 AF047645.1 acid mine drainage clone TRA5-3 2.43.5.24.1.1.8847 OTU 4 seqs prokMSA_id:7771 AJ001010.1 Nevskia ramosa prokMSA_id:7772 AJ001343.1 Nevskia ramosa prokMSA_id:7773 AJ001011.1 Nevskia ramosa prokMSA_id:100739 AY625136.1 perchloroethylene-contaminated ground water clone I-2 2.43.5.24.1.1.8983 OTU 22 seqs prokMSA_id:7783 U15112.1 hydrothermal vent clone PVB_OTU_1a prokMSA_id:7784 U15111.1 hydrothermal vent clone PVB_OTU_1 prokMSA_id:7785 U89956.1 newly identified soil gram negative non-motile rod-shaped (0.3 x 1.5 micrometers) pale yel often producing brown pigment growth at 30 degrees celsius biological control capacity against soil-borne fun prokMSA_id:7786 AF012541.1 Iron oxidising strain ES-1 prokMSA_id:7788 AB016762.1 Xanthomonas sp. str. AK prokMSA_id:7789 U15113.1 hydrothermal vent clone PVB_OTU11 prokMSA_id:20839 AY039429.1 Soil isolate str. S65D1 prokMSA_id:27494 AY074793.1 Lysobacter sp. str. C3 prokMSA_id:52059 AJ298291.1 Lysobacter enzymogenes str. DSM 2043T prokMSA_id:59175 AY136098.1 Lake Kinneret isolate str. KIN190 prokMSA_id:60837 AY135931.1 clone SG2-145 prokMSA_id:61184 AB083480.1 Lysobacter sp. str. IB-9374 prokMSA_id:73870 AB054969.1 Xanthomonas sp. str. 1018 prokMSA_id:93932 AJ582198.1 soil collected near uranium mill tailings Gittersee/Coschuetz clone Gitt-GS-126 prokMSA_id:99305 AB161361.1 Lysobacter gummosus str. KCTC 12132 prokMSA_id:100144 AB166878.1 Lysobacter sp. str. Dae16 prokMSA_id:101320 AY599706.1 Xanthomonas sp. str. TB8-9-II prokMSA_id:101492 AY599707.1 fungal ascocarp clone Cl-9-TB8-II prokMSA_id:101662 AY599708.1 fungal ascocarp clone Cl-91-TB4-II prokMSA_id:104359 AY439187.1 soil clone MeCl 21 prokMSA_id:112050 AY864080.1 nodule isolate str. CCBAU 25211 prokMSA_id:113630 AY947529.1 Lysobacter enzymogenes str. OH11 2.43.5.24.1.1.9001 OTU 1 seq prokMSA_id:28808 AF312216.1 South Africa: KwaZulu-Natal Province Pietermaritzburg clone Y14-2 bacterium 2.43.5.24.1.1.9031 OTU 1 seq prokMSA_id:59535 AF538773.1 municipal wastewater treatment bioreactor clone LB-P bacterium 2.43.5.24.1.1.9045 OTU 1 seq prokMSA_id:67341 AF494542.1 Rhodanobacter sp. str. BPC1 2.43.5.24.1.1.9055 OTU 2 seqs prokMSA_id:7792 AF139997.1 Xanthomonas sp. str. ML-122 prokMSA_id:50378 AF140004.1 Xanthomonas sp. str. ML-168b 2.43.5.24.1.1.9093 OTU 1 seq prokMSA_id:62951 AF527601.1 EBPR sludge lab scale clone LPU81 2.43.5.24.1.1.9150 OTU 1 seq prokMSA_id:7805 AF170732.1 Stenotrophomonas sp. str. QSSC1-10 2.43.5.24.1.1.9167 OTU 1 seq prokMSA_id:78320 AB074619.1 pea aphid symbiont clone APe4_38 2.43.5.24.1.1.9211 OTU 1 seq prokMSA_id:81089 AY218694.1 penguin droppings sediments clone KD8-80 2.43.5.24.1.1.9241 OTU 3 seqs prokMSA_id:66232 AF508110.1 Thermomonas haemolytica TG15 prokMSA_id:76111 AJ519988.1 Thermomonas fusca str. LMG 21739 prokMSA_id:76350 AJ519987.1 Thermomonas fusca str. LMG 21738 2.43.5.24.1.1.9259 OTU 3 seqs prokMSA_id:17521 AF472556.1 Lysobacter sp. str. XL1 prokMSA_id:83249 AY267505.1 Lysobacter sp. str. 2CBAB prokMSA_id:113314 AB190258.1 Lysobacter sp. str. SB-K88 2.43.5.24.1.1.9270 OTU 9 seqs prokMSA_id:7899 AJ131117.1 Stenotrophomonas maltophilia str. LMG 10857 prokMSA_id:7900 AJ011332.1 Stenotrophomonas maltophilia HK40 prokMSA_id:34542 AJ293463.1 Stenotrophomonas rhizophila str. e-p10 prokMSA_id:38820 AJ293461.1 Stenotrophomonas rhizophila str. e-p14 prokMSA_id:52297 AJ293462.1 Stenotrophomonas rhizophila str. e-p17 prokMSA_id:57539 AJ516049.1 Stenotrophomonas maltophilia str. LE/61 prokMSA_id:61947 AJ244720.1 France:Nice isolate str. V4.BP.15 = MM_2681 V4.BP.15 prokMSA_id:64287 AY040357.1 Stenotrophomonas maltophilia str. LMG 20578 prokMSA_id:68651 AY081993.1 atrazine-catabolizing microbial absence methanol clone KRA30-39 2.43.5.24.1.1.9277 OTU 1 seq prokMSA_id:79105 AY188327.1 penguin droppings sediment clone KD8-68 2.43.5.24.1.1.9281 OTU 1 seq prokMSA_id:26701 AJ318114.1 Waste-gas biofilter clone BIci4 2.43.5.24.1.1.9284 OTU 1 seq prokMSA_id:34580 AJ318146.1 Waste-gas biofilter clone BIhiii13 2.43.5.24.1.1.9286 OTU 1 seq prokMSA_id:7859 AJ131912.1 Stenotrophomonas maltophilia str. LMG 11104 2.43.5.24.1.1.9319 OTU 8 seqs prokMSA_id:79255 AY188318.1 penguin droppings sediment clone KD5-58 prokMSA_id:79780 AY188308.1 marine? clone KD3-82 prokMSA_id:79852 AY188295.1 marine? clone KD1-149 prokMSA_id:81132 AY218756.1 penguin droppings sediments clone KD6-20 prokMSA_id:81196 AY218771.1 penguin droppings sediments clone KD6-83 prokMSA_id:81363 AY218719.1 penguin droppings sediments clone KD7-89 prokMSA_id:81461 AY218667.1 penguin droppings sediments clone KD9-36 prokMSA_id:82402 AY218686.1 penguin droppings sediments clone KD8-16 2.43.5.24.1.1.9320 OTU 5 seqs prokMSA_id:60986 AF531538.1 soil contaminated with heavy metal clone a13161 prokMSA_id:65454 AY102331.1 clone a13138 prokMSA_id:65466 AY102319.1 clone a13112 prokMSA_id:74443 AJ318204.1 Waste-gas biofilter clone BIyi3 prokMSA_id:113034 AY921780.1 farm soil adjacent to silage storage bunker clone AKYG1578 2.43.5.24.1.1.9330 OTU 1 seq prokMSA_id:79383 AB100608.1 Swingsiella fulva str. Jip2 2.43.5.24.1.1.9332 OTU 1 seq prokMSA_id:66606 AY096032.1 wetland ecosystem constructed to remediate mine drainage isolate str. WJ2 WJ2 2.43.5.24.1.1.9426 OTU 1 seq prokMSA_id:7791 AB021333.1 strain isolate str. rJ15 2.43.5.24.1.1.9433 OTU 1 seq prokMSA_id:43798 AF260712.1 Stenotrophomonas sp. str. S8 2.43.5.24.1.1.9449 OTU 1 seq prokMSA_id:7793 AJ012228.1 Luteimonas mephitis str. B1953/27.1 2.43.5.24.1.1.9569 OTU 39 seqs prokMSA_id:7843 M26601.1 Xylella fastidiosa prokMSA_id:7844 AF159572.1 Xylella fastidiosa str. PCE-FG; ATCC35881 prokMSA_id:7845 AF159573.1 Xylella fastidiosa str. r116v11 prokMSA_id:7846 AF159574.1 Xylella fastidiosa str. PD28-5 prokMSA_id:7847 AF159575.1 Xylella fastidiosa str. CVC93-2 prokMSA_id:7848 AF159576.1 Xylella fastidiosa str. Mul-2 prokMSA_id:7849 AF159577.1 Xylella fastidiosa str. OSL92-3 prokMSA_id:7850 AF159578.1 Xylella fastidiosa str. PWT-22; ATCC35878 prokMSA_id:7851 AF159579.1 Xylella fastidiosa str. PLS2-9 prokMSA_id:7852 AF159580.1 Xylella fastidiosa str. PP4-5 prokMSA_id:7853 AF192343.1 Xylella fastidiosa str. PCE-FF; ATCC35879 prokMSA_id:19013 AF224734.1 Xylella fastidiosa prokMSA_id:19739 AF224736.1 Xylella fastidiosa plant#5 CVC prokMSA_id:20550 AF203390.1 Xylella fastidiosa str. CO.01 prokMSA_id:21170 AF203388.1 Xylella fastidiosa str. PL.788; ATCC35871 prokMSA_id:21608 AF203391.1 Xylella fastidiosa str. GR.8935; ATCC35879 prokMSA_id:25098 AF203392.1 Xylella fastidiosa str. PE.PLS prokMSA_id:27520 AF224735.1 Xylella fastidiosa str. ATCC 35874 prokMSA_id:30732 AE003861.1 Xylella fastidiosa 9a5c prokMSA_id:40772 AF224740.1 Xylella fastidiosa MUL1 prokMSA_id:50284 NC_002488.2 Xylella fastidiosa 9a5c prokMSA_id:50520 AF203389.1 Xylella fastidiosa str. CI.52 prokMSA_id:50654 AF224737.1 Xylella fastidiosa Found 4 prokMSA_id:51235 AE003870.1 Xylella fastidiosa prokMSA_id:51545 AF224738.1 Xylella fastidiosa str. ATCC 35873 prokMSA_id:56224 AF536761.1 Xylella fastidiosa str. ATCC 35871 PLM G83 prokMSA_id:56414 AF536769.1 Xylella fastidiosa P3 prokMSA_id:59937 AF536770.1 Xylella fastidiosa str. ATCC 35870 ALS-BC prokMSA_id:59938 AF536768.1 Xylella fastidiosa CRS2 prokMSA_id:59939 AF536767.1 Xylella fastidiosa CM1 prokMSA_id:59940 AF536766.1 Xylella fastidiosa SL1 prokMSA_id:59941 AF536765.1 Xylella fastidiosa B14 prokMSA_id:59942 AF536764.1 Xylella fastidiosa str. ATCC 35873 ELM-1 prokMSA_id:59943 AF536763.1 Xylella fastidiosa MUL-3 prokMSA_id:59944 AF536762.1 Xylella fastidiosa RGW-R prokMSA_id:59945 AF536760.1 Xylella fastidiosa Temecula prokMSA_id:74745 AF224739.1 Xylella fastidiosa Cafe 20 prokMSA_id:79259 AE012553.1 Xylella fastidiosa prokMSA_id:79335 NC_004556.1 Xylella fastidiosa Temecula1 2.43.5.24.1.1.9579 OTU 1 seq prokMSA_id:44870 AJ318183.1 Waste-gas biofilter clone BIsiii14 2.43.5.24.1.1.9623 OTU 2 seqs prokMSA_id:39084 AF445683.1 travertine hot spring clone SM1E05 prokMSA_id:39919 AF445682.1 travertine hot spring clone SM1E04 2.43.5.24.1.1.9639 OTU 5 seqs prokMSA_id:66233 AF508111.1 Thermomonas haemolytica TJ7 prokMSA_id:66235 AF508108.1 Thermomonas haemolytica S5 prokMSA_id:66236 AF508107.1 Thermomonas haemolytica S2 prokMSA_id:66237 AF508105.1 Thermomonas haemolytica N22 prokMSA_id:66239 AF508106.1 Thermomonas haemolytica N4 2.43.5.24.1.1.9644 OTU 1 seq prokMSA_id:82320 AY218596.1 penguin droppings sediments clone KD2-87 2.43.5.3 Aeromonadales 143 seqs 2.43.5.3.1 Aeromonadaceae 131 seqs 2.43.5.3.1.1 sf_1 131 seqs 2.43.5.3.1.1.8340 OTU 6 seqs prokMSA_id:9386 X71120.1 Aeromonas ichthiosmia prokMSA_id:9425 X74684.1 Aeromonas veronii prokMSA_id:9437 X60414.1 Aeromonas veronii prokMSA_id:9438 U88659.1 Aeromonas sp. 'CDC 964-83' str. CDC 964-83 'CDC prokMSA_id:49072 AF410949.1 Aeromonas veronii str. ATCC 9071 prokMSA_id:58410 AF418213.1 Aeromonas veronii str. LMG13695 2.43.5.3.1.1.8364 OTU 4 seqs prokMSA_id:9361 S39232.1 Aeromonas allosaccharophila prokMSA_id:9362 U88658.1 Aeromonas sp. 'CDC 715-84' str. CDC 715-84 'CDC prokMSA_id:9426 U88654.1 Aeromonas sp. 'CDC 437-84' str. CDC 437-84 'CDC prokMSA_id:58413 AF418212.1 Aeromonas veronii str. LMG13695 2.43.5.3.1.1.8406 OTU 4 seqs prokMSA_id:9402 AB021371.1 Oceanimonas doudoroffii str. ATCC 27123T prokMSA_id:35016 AF168367.1 Oceanimonas baumannii str. GB6 prokMSA_id:73145 AF094724.1 Oceanimonas doudoroffii str. ATCC 27123 prokMSA_id:113893 AY562194.1 Oceanimonas sp. str. Be07 2.43.5.3.1.1.8621 OTU 1 seq prokMSA_id:25552 AF427150.1 Aeromonas sp. PAR2A 2.43.5.3.1.1.8734 OTU 1 seq prokMSA_id:9403 AF118387.1 Aeromonas jandaei str. ST19 2.43.5.3.1.1.8746 OTU 1 seq prokMSA_id:9405 AF118388.1 Aeromonas hydrophila str. LB5 2.43.5.3.1.1.8812 OTU 1 seq prokMSA_id:84842 AJ550470.1 Oceanisphaera litoralis str. DSM 15406 2.43.5.3.1.1.8835 OTU 1 seq prokMSA_id:80169 AF468257.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-76 2.43.5.3.1.1.9000 OTU 42 seqs prokMSA_id:9359 AJ009859.1 Aeromonas salmonicida subsp. smithia str. CCM 4103 subsp. prokMSA_id:9363 X74676.1 Aeromonas hydrophila prokMSA_id:9369 X60410.1 Aeromonas media prokMSA_id:9372 X60404.1 Aeromonas hydrophila prokMSA_id:9381 X74677.1 Aeromonas hydrophila prokMSA_id:9382 U88655.1 Aeromonas sp. 'CDC 862-83' str. CDC 862-83 'CDC prokMSA_id:9384 X74678.1 Aeromonas jandaei prokMSA_id:9385 AF170914.4 Aeromonas culicicola str. MTCC 3249 prokMSA_id:9400 X60413.1 Aeromonas jandaei prokMSA_id:9410 U88662.1 Aeromonas sp. 'CDC 787-80' str. CDC 787-80 'CDC prokMSA_id:9411 AF063003.1 Aeromonas sp. RC278 str. RC278(MM85) prokMSA_id:9417 X60408.1 Aeromonas caviae prokMSA_id:9419 U88660.1 Aeromonas sp. 'CDC 2452-91' str. CDC 2452-91 'CDC prokMSA_id:9421 X60409.1 Aeromonas caviae prokMSA_id:9422 U88656.1 Aeromonas sp. 'CDC 9013-89' str. CDC 9013-89 'CDC prokMSA_id:9424 AF099027.1 Aeromonas sp. str. T8 prokMSA_id:9427 AF037271.1 Aeromonas sp. RC50 str. RC50; FC643 prokMSA_id:9433 X60415.1 Aeromonas trota prokMSA_id:9439 AB028881.1 Aeromonas guangheii str. 95-173 prokMSA_id:9445 AB027005.1 Aeromonas salmonicida str. NI-441 T83-k-sw-2 IS-205 prokMSA_id:9446 AB027006.1 Aeromonas salmonicida str. GU-187 IB-277 prokMSA_id:9452 X74674.1 Aeromonas caviae prokMSA_id:9453 X74679.1 Aeromonas media prokMSA_id:9454 AF157690.1 Aeromonas media str. 86352 prokMSA_id:20270 AB076858.1 Aeromonas sp. str. PG3-3 prokMSA_id:26539 AF324534.1 extracted transducing cf. Aeromonas hydrophila clone BioIuz K40 proteobacterium prokMSA_id:28522 AF468055.1 Aeromonas hydrophila str. 45/90 prokMSA_id:30233 AF324535.1 extracted transducing cf. Aeromonas hydrophila clone BioIuz K41 proteobacterium prokMSA_id:39643 AB076859.1 Aeromonas sp. str. PG4-1 prokMSA_id:42667 AF468056.1 Aeromonas hydrophila str. 4AK4 prokMSA_id:46643 AF324532.1 extracted transducing cf. Aeromonas hydrophila clone BioIuz K1 proteobacterium prokMSA_id:51245 AF410780.1 Aeromonas sp. str. NLEP -1607 prokMSA_id:52200 AF324533.1 extracted transducing cf. Aeromonas hydrophila clone BioIuz K39 proteobacterium prokMSA_id:55879 AF418211.1 Aeromonas veronii str. LMG13695 prokMSA_id:58415 AF418209.1 Aeromonas veronii str. LMG13695 prokMSA_id:59115 AF418217.1 Aeromonas media 4 prokMSA_id:59116 AF418219.1 Aeromonas media 6 prokMSA_id:59117 AF418218.1 Aeromonas media 5 prokMSA_id:59119 AF418216.1 Aeromonas media 3 prokMSA_id:59291 AJ508765.1 Aeromonas hydrophila subsp. dhakensis str. LMG 19562 subsp. prokMSA_id:61814 AF529348.1 PCE-contaminated site clone CLs70 prokMSA_id:69929 AJ508766.1 Aeromonas hydrophila subsp. ranaei str. LMG 19707 subsp. 2.43.5.3.1.1.9026 OTU 10 seqs prokMSA_id:9395 X74681.1 Aeromonas salmonicida prokMSA_id:9398 AF134065.1 Aeromonas salmonicida subsp. pectinolytica str. 34mel subsp. prokMSA_id:9420 X74680.1 Aeromonas salmonicida prokMSA_id:9444 X60407.1 Aeromonas salmonicida prokMSA_id:9447 AJ009860.1 Haemophilus piscium str. NCIMB 1952 prokMSA_id:22088 AF200329.1 Aeromonas salmonicida prokMSA_id:34796 AB027545.1 Aeromonas salmonicida subsp. atypical str. FPC504 FPC565 FPC566 and TO-38 prokMSA_id:44568 AF108136.1 Aeromonas salmonicida prokMSA_id:56271 AF513938.1 Aeromonadaceae clone PH-B39N prokMSA_id:74870 AB034761.1 Aeromonas hydrophila str. 28SA 2.43.5.3.1.1.9062 OTU 6 seqs prokMSA_id:9366 L31915.1 Aeromonas species prokMSA_id:9375 X60405.1 Aeromonas salmonicida prokMSA_id:9376 X60406.1 Aeromonas salmonicida prokMSA_id:9416 AF005256.1 Aeromonas sp. str. MR-64 prokMSA_id:42473 AF140018.1 Aeromonas sp. str. ML-S4 prokMSA_id:46545 AF150688.1 Elbe River snow isolate Iso10neu Iso10neu_1409 snow 2.43.5.3.1.1.9245 OTU 1 seq prokMSA_id:82407 AB105442.1 Batch reactor filled with cyanobacterial bloom and lake water clone -8 2.43.5.3.1.1.9294 OTU 2 seqs prokMSA_id:82957 AJ557845.1 seawater prokMSA_id:84025 AJ557849.1 seawater 2.43.5.3.1.1.9440 OTU 13 seqs prokMSA_id:9360 X74675.1 Aeromonas eucrenophila prokMSA_id:9389 AJ223180.1 Aeromonas popoffii str. LMG 17542 prokMSA_id:9396 AJ224309.1 Aeromonas encheleia str. 1881 prokMSA_id:9406 X60411.1 Aeromonas eucrenophila prokMSA_id:9407 U88661.1 Aeromonas sp. 'CDC 859-83' str. CDC 859-83 'CDC prokMSA_id:9415 X60412.1 Aeromonas sobria prokMSA_id:9431 X60417.1 Aeromonas species prokMSA_id:9434 X74683.1 Aeromonas sobria prokMSA_id:43157 AB034763.1 Aeromonas sp. str. FPC685 prokMSA_id:67000 AJ458413.1 Aeromonas sp. str. LMG 13062 prokMSA_id:67001 AJ458412.1 Aeromonas sp. str. LMG 17065 prokMSA_id:67002 AJ458410.1 Aeromonas sp. str. LMG 16405 prokMSA_id:67005 AJ458405.1 Aeromonas sp. str. LMG 13061 2.43.5.3.1.1.9494 OTU 37 seqs prokMSA_id:9365 AB032088.1 Aeromonas hydrophila str. Ef1L1 prokMSA_id:9367 X74682.1 Aeromonas schubertii prokMSA_id:9418 U88657.1 Aeromonas sp. 'CDC 9017-79' str. CDC 9017-79 prokMSA_id:9449 X60416.1 Aeromonas schubertii prokMSA_id:9450 U88663.1 Aeromonas sp. 'CDC 2478-85' str. CDC 2478-85 'CDC prokMSA_id:18994 AJ308468.1 Aeromonas sp. 54 prokMSA_id:21594 AF324536.1 extracted transducing cf. Aeromonas hydrophila clone BioIuz K43 proteobacterium prokMSA_id:34508 AJ295654.1 uranium mining waste pile clone KF/GS-JG36-20 KF/GS-JG36-20 prokMSA_id:36658 AF189694.1 Aeromonas sp. str. BC16 prokMSA_id:40526 AF324530.1 extracted transducing cf. Aeromonas veronii clone BioIuz K30 proteobacterium prokMSA_id:46908 AF324531.1 extracted transducing cf. Aeromonas allosaccharophila clone BioIuz K33 proteobacterium prokMSA_id:47441 AF150699.1 Elbe River snow isolate Iso19neu Iso19neu_1356 snow prokMSA_id:56067 AF418214.1 Aeromonas media 1 prokMSA_id:58414 AF418210.1 Aeromonas veronii str. LMG13695 prokMSA_id:61823 AF529341.1 PCE-contaminated site clone CLi66 prokMSA_id:66205 AJ278105.1 Aeromonas sp. str. RR8 prokMSA_id:78159 AB074594.1 pea aphid symbiont clone APe2_12 prokMSA_id:78527 AJ536820.1 Aeromonas simiae str. IBS S6652 prokMSA_id:79043 AJ536821.1 Aeromonas simiae str. IBS S6874 prokMSA_id:82433 AB105443.1 Batch reactor filled with cyanobacterial bloom and lake water clone -9 prokMSA_id:99610 AY532688.1 Aeromonas molluscorum str. 93M prokMSA_id:99762 AY532689.1 Aeromonas molluscorum str. 431E prokMSA_id:103503 AY532690.1 Aeromonas molluscorum str. 848T prokMSA_id:103637 AY532691.1 Aeromonas molluscorum str. 849T prokMSA_id:103785 AY532692.1 Aeromonas molluscorum str. 869N prokMSA_id:107001 AY534350.1 Aeromonas popoffii str. 3302883 prokMSA_id:107095 AY689069.1 Aeromonas sp. str. 9C_12 prokMSA_id:110092 AY347679.1 Aeromonas culicicola str. 03037TRG prokMSA_id:110821 AY347677.1 Aeromonas culicicola str. 02238ADA prokMSA_id:110878 AY347678.1 Aeromonas culicicola str. 02424ADA prokMSA_id:112911 AY928264.1 isolate str. S19F22 prokMSA_id:113222 AY928235.1 isolate str. Mn104244 prokMSA_id:113294 AY928236.1 isolate str. Mn104231 prokMSA_id:113637 AY928263.1 isolate str. S19N31 prokMSA_id:113768 AY928256.1 isolate str. S13F23 prokMSA_id:114039 AY928234.1 isolate str. Mn104243 prokMSA_id:114287 AY928237.1 isolate str. Mn104233 2.43.5.3.1.1.9537 OTU 1 seq prokMSA_id:47170 AJ232859.1 rhizosphere soil Lolium perenne clone LRS19 2.43.5.3.2 Succinivibrionaceae 9 seqs 2.43.5.3.2.1 sf_1 6 seqs 2.43.5.3.2.1.8822 OTU 1 seq prokMSA_id:60771 AF497809.1 Anaerobiospirillum sp. str. 3J102 2.43.5.3.2.1.8976 OTU 2 seqs prokMSA_id:9349 Y15992.1 Ruminobacter amylophilus str. 1361 ATCC 29744 DSM 43089 prokMSA_id:9350 AB004908.1 Ruminobacter amylophilus str. NIAH-3 Bovine rumen 2.43.5.3.2.1.8977 OTU 1 seq prokMSA_id:9351 Y17599.1 Succinimonas amylolytica str. DSM 2873 2.43.5.3.2.1.8996 OTU 1 seq prokMSA_id:9356 U96412.1 Anaerobiospirillum succiniciproducens str. ATCC 29305 2.43.5.3.2.1.8997 OTU 1 seq prokMSA_id:9357 Y17600.1 Succinivibrio dextrinosolvens str. DSM 3072 2.43.5.3.2.2 sf_2 1 seq 2.43.5.3.2.2.9539 OTU 1 seq prokMSA_id:9448 AF018462.1 Aeromonas subgroup subdivision clone 12-18 bacterium 2.43.5.3.2.3 sf_5 2 seqs 2.43.5.3.2.3.9400 OTU 2 seqs prokMSA_id:29865 AJ420985.1 Anaerobiospirillum thomasii str. DSM 11806T prokMSA_id:60774 AF497808.1 Anaerobiospirillum sp. str. B0101 2.43.5.3.3 Unclassified 3 seqs 2.43.5.3.3.1 sf_1 3 seqs 2.43.5.3.3.1.8860 OTU 3 seqs prokMSA_id:9352 AF018448.1 rumen clone JW27 prokMSA_id:9353 AF018451.1 rumen clone JW34 prokMSA_id:103596 AB185751.1 rumen clone U29-B02 2.43.5.4 Alteromonadales 678 seqs 2.43.5.4.1 Alteromonadaceae 544 seqs 2.43.5.4.1.1 sf_1 544 seqs 2.43.5.4.1.1.8167 OTU 1 seq prokMSA_id:31197 AF359542.1 Alexandrium tamarense PCC 173a 2.43.5.4.1.1.8172 OTU 2 seqs prokMSA_id:73410 AB055791.1 Pseudoalteromonas sp. str. Bdeep-1 prokMSA_id:73474 AB055797.1 Pseudoalteromonas sp. str. Ideep-1 2.43.5.4.1.1.8174 OTU 1 seq prokMSA_id:8878 AF114499.1 attached marine recovered surface clone 17 proteobacterium 2.43.5.4.1.1.8188 OTU 1 seq prokMSA_id:71399 AF173965.1 Alteromonas macleodii str. KT1113 2.43.5.4.1.1.8189 OTU 1 seq prokMSA_id:50125 AF132870.1 Shewanella frigidimarina str. ACAM 562 2.43.5.4.1.1.8196 OTU 1 seq prokMSA_id:77803 AY172267.1 2.43.5.4.1.1.8204 OTU 1 seq prokMSA_id:27115 AF228694.1 isolate str. EHK-1 2.43.5.4.1.1.8211 OTU 1 seq prokMSA_id:8829 AB002630.1 Colwellia maris str. ABE-1 2.43.5.4.1.1.8222 OTU 1 seq prokMSA_id:78196 AY172262.1 2.43.5.4.1.1.8260 OTU 1 seq prokMSA_id:45605 AF195473.1 September collection clone kps67f 2.43.5.4.1.1.8266 OTU 1 seq prokMSA_id:8850 U14581.1 Colwellia-like bacterium 2.43.5.4.1.1.8318 OTU 1 seq prokMSA_id:84007 AY207502.1 Aestuariibacter salexigens str. JC2042 2.43.5.4.1.1.8336 OTU 5 seqs prokMSA_id:37299 AY028202.1 exposed to diatom detritus isolate str. Tw-7 Tw-7 prokMSA_id:39843 AF354601.1 marine clone Arctic96AD-16 prokMSA_id:40549 AF237977.1 Alteromonas sp. str. MS23 prokMSA_id:43301 AJ391189.1 Pseudoalteromonas sp. str. AS-28 prokMSA_id:51268 AJ391188.1 Pseudoalteromonas sp. str. AS-27 2.43.5.4.1.1.8348 OTU 1 seq prokMSA_id:80239 AF468388.1 Arctic sea ice ARK10038 2.43.5.4.1.1.8351 OTU 8 seqs prokMSA_id:35476 AF055821.1 Marine 'Sippewissett 2-32' isolate str. Sippewissett 2-32 prokMSA_id:51065 AF479688.1 Microbulbifer salipaludis str. SM-1 prokMSA_id:55775 AF500006.1 Microbulbifer elongatus str. DSM 6810 prokMSA_id:85971 AF500209.1 Pseudomonas sp. str. CJ11075 prokMSA_id:92740 AY357901.1 Microbulbifer sp. str. NRL-TS4 prokMSA_id:93132 AY357895.1 Microbulbifer sp. str. NRL-CB10 prokMSA_id:95512 AB107975.1 Microbulbifer sp. str. JAMB-A7 prokMSA_id:106364 AJ608704.1 Microbulbifer hydrolyticus str. DSM 11525 2.43.5.4.1.1.8363 OTU 4 seqs prokMSA_id:80765 AF468309.1 Arctic sea ice; northern Fram Strait clone ARKICE-110 prokMSA_id:81094 AY165577.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-132 sea prokMSA_id:81840 AY165591.1 pack ice northern Fram Strait Arctic Ocean clone ARKXV/1-106 sea prokMSA_id:82034 AY165594.1 pack ice northern Fram Strait Arctic Ocean clone ARKXV/1-127 sea 2.43.5.4.1.1.8368 OTU 4 seqs prokMSA_id:8921 AF118018.1 Pseudoalteromonas sp. str. RE10F/2 prokMSA_id:42828 AF475096.1 Pseudoalteromonas porphyrae str. Q-1-6 prokMSA_id:59526 AJ507251.1 Pseudoalteromonas mariniglutinosa str. KMM 3635 prokMSA_id:79398 AY187028.1 Pseudoalteromonas sp. str. MMM18 2.43.5.4.1.1.8371 OTU 1 seq prokMSA_id:46569 AF277532.1 polar sea ice clone SIC.10369 2.43.5.4.1.1.8374 OTU 3 seqs prokMSA_id:56430 AB076562.1 Agarivorans albus str. MKT 112 prokMSA_id:60314 AB076561.1 Agarivorans albus str. MKT 106 prokMSA_id:60316 AB076560.1 Agarivorans albus str. MKT 89 2.43.5.4.1.1.8410 OTU 1 seq prokMSA_id:73940 AJ240915.1 5' clone CHAB-XII-8 2.43.5.4.1.1.8426 OTU 1 seq prokMSA_id:8800 U85863.1 Marinobacter sp. str. IC022 2.43.5.4.1.1.8428 OTU 1 seq prokMSA_id:8806 AB026946.1 Marinobacter sp. str. NK-1 2.43.5.4.1.1.8454 OTU 1 seq prokMSA_id:46424 AF354611.1 marine clone Arctic96A-14 2.43.5.4.1.1.8484 OTU 1 seq prokMSA_id:60385 AF513454.1 Alteromonadaceae isolate str. LA50 2.43.5.4.1.1.8503 OTU 5 seqs prokMSA_id:80459 AF468401.1 Arctic sea ice ARK10244 prokMSA_id:80672 AF468230.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-12 prokMSA_id:80774 AF468319.1 Arctic sea ice; northern Fram Strait clone ARKICE-18 prokMSA_id:81478 AY165590.1 pack ice northern Fram Strait Arctic Ocean clone ARKXV/1-103 sea prokMSA_id:81583 AY167267.1 Marinobacter sp. str. ANT8277 2.43.5.4.1.1.8517 OTU 1 seq prokMSA_id:36509 AJ400346.1 f cytometric sorted marine sample subpopulation 2 clone ZD0117 bacterium 2.43.5.4.1.1.8519 OTU 1 seq prokMSA_id:60391 AF513448.1 Alteromonadaceae isolate str. LA13 2.43.5.4.1.1.8520 OTU 1 seq prokMSA_id:20204 AB059262.1 Moritella sp. str. PS10-13 2.43.5.4.1.1.8533 OTU 1 seq prokMSA_id:42798 AF114503.1 attached marine recovered depth 400m clone 24 2.43.5.4.1.1.8572 OTU 1 seq prokMSA_id:46627 AF227237.1 Pseudoalteromonas sp. str. A25 2.43.5.4.1.1.8578 OTU 31 seqs prokMSA_id:8801 U85864.1 Marinobacter sp. str. IC032 prokMSA_id:8819 AJ000647.1 Marinobacter sp. str. PCOB-2 prokMSA_id:8820 AF148811.1 Marinobacter arcticus prokMSA_id:21327 AF237685.1 Marinobacter sp prokMSA_id:38286 AJ296567.1 uranium mining mill tailing clone GR-Sh1-128 GR-Sh1-128 prokMSA_id:45418 AJ429499.1 Marinobacter sp. str. 2sq31 prokMSA_id:59259 AJ439500.1 Marinobacter squalenivorans str. 2Asq64 prokMSA_id:71127 AJ302707.1 Marinobacter sp. ME108 prokMSA_id:80143 AB089803.1 Marinobacter sp. str. HS7 prokMSA_id:80533 AF468259.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-57 prokMSA_id:82214 AY147906.1 Marinobacter lipolyticus str. SM-19 prokMSA_id:91462 AY345358.1 Loihi submarine volcano isolate str. R10CA prokMSA_id:99109 AB189331.1 Marinobacter sp. str. BP-Mb1 prokMSA_id:99260 AB189332.1 Marinobacter sp. str. BP-Mb2 prokMSA_id:100112 AY517632.1 Marinobacter flavimaris str. SW-145 prokMSA_id:100268 AY517633.1 Marinobacter daepoensis str. SW-156 prokMSA_id:100961 AB166980.1 Marinobacter sp. str. NT N31 prokMSA_id:101123 AB166981.1 Marinobacter sp. str. NT N36 prokMSA_id:101521 AB167031.1 Marinobacter sp. str. NT N115 prokMSA_id:104749 AB166957.1 Marinobacter sp. str. SYM P6 prokMSA_id:104848 AB166970.1 Marinobacter sp. str. NT N14 prokMSA_id:105135 AB166972.1 Marinobacter sp. str. NT N17 prokMSA_id:105299 AB166973.1 Marinobacter sp. str. NT N18 prokMSA_id:105761 AB166976.1 Marinobacter sp. str. NT N21 prokMSA_id:106387 AB167040.1 Marinobacter sp. str. NT N125 prokMSA_id:106705 AB167042.1 Marinobacter sp. str. NT N128 prokMSA_id:107010 AJ704395.1 Marinobacter sp. CK47 prokMSA_id:107280 AB125941.1 Marinobacter alkaliphilus str. ODP1200D-0.1 prokMSA_id:107426 AB125942.1 Marinobacter alkaliphilus str. ODP1200D-1.5 prokMSA_id:107600 AB167048.1 Marinobacter sp. str. NT N150 prokMSA_id:109228 AB180396.1 Marinobacter sp. str. No. 75 2.43.5.4.1.1.8579 OTU 21 seqs prokMSA_id:9115 U14582.1 gas vacuolate str.90-P1 prokMSA_id:9117 U85849.1 Psychromonas sp. str. IC004 prokMSA_id:9120 U73722.1 gas vacuolate str. 174 prokMSA_id:9121 Y14697.1 Psychromonas antarctica str. star-1 (DSM 10704) prokMSA_id:21481 AB052160.1 Psychromonas kaikoae str. JT7304 prokMSA_id:25724 AJ416756.1 Psychromonas profunda str. 2825 prokMSA_id:32735 AJ400705.1 str. Mst85 marine sediment prokMSA_id:38990 AF374385.1 Psychromonas arctica str. Pull 5.3 prokMSA_id:39185 AF419349.1 Psychromonas sp. str. Ant5-5 prokMSA_id:47163 AB038034.1 Marine psychrotrophic isolate str. MK242 prokMSA_id:61119 AF530142.1 Psychromonas sp. str. MGP-29/AN1 prokMSA_id:71948 AF235108.1 Alteromonas sp. str. KT1114 prokMSA_id:72165 AF235123.1 Alteromonas sp. str. KT1102 prokMSA_id:73094 AJ308372.1 psychrotrophic str. Mst37 marine sediment prokMSA_id:73561 AF235109.1 Alteromonas sp. str. KT1116 prokMSA_id:79713 AF468290.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-79 prokMSA_id:80094 AF468249.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-45 prokMSA_id:81267 AY167306.1 Psychromonas sp. str. ANT9248 prokMSA_id:81340 AY167326.1 Psychromonas sp. str. ANT9265 prokMSA_id:81844 AY167312.1 Psychromonas sp. str. ANT9282a prokMSA_id:98089 AB094413.1 Psychromonas hadaliensis str. K41G 2.43.5.4.1.1.8580 OTU 28 seqs prokMSA_id:8905 X82146.1 Pseudoalteromonas nigrifaciens prokMSA_id:8907 AF038846.1 Pseudoalteromonas gracilis str. B9 prokMSA_id:8914 AF022407.1 Pseudoalteromonas sp. ANG.ro2 str. ANG.strain ro2 ANG.ro2 prokMSA_id:8926 U85856.1 Pseudoalteromonas sp. str. IC006 prokMSA_id:8927 U85857.1 Pseudoalteromonas sp. str. MB6-03 prokMSA_id:8928 U85858.1 Pseudoalteromonas sp. str. MB8-02 prokMSA_id:8931 U85861.1 Pseudoalteromonas sp. str. SW08 prokMSA_id:8944 X98336.1 Pseudoalteromonas antarctica str. CECT 4664 NF3 prokMSA_id:8945 AF082563.1 Pseudoalteromonas citrea str. KMM216 prokMSA_id:21879 AY040230.1 Pseudoalteromonas translucida str. KMM520 prokMSA_id:33697 AF443784.1 Pseudoalteromonas sp. str. 22b prokMSA_id:45332 X86462.1 Pseudoalteromonas sp. str. JLN-A013 prokMSA_id:54098 AF200216.1 Psychrophilic marine complete and -23S intergenic spacer region isolate str. PS39 bacterium prokMSA_id:54633 AF200214.1 Psychrophilic marine complete and -23S intergenic spacer region isolate str. PS10 bacterium prokMSA_id:54983 AF200215.1 Psychrophilic sea water complete and -23S intergenic spacer region isolate str. PS16 water prokMSA_id:60988 AF529062.1 Pseudoalteromonas citrea str. CIP 105339 prokMSA_id:61120 AF530143.1 Pseudoalteromonas sp. str. MGP-34 prokMSA_id:67502 AY092074.1 Pseudoalteromonas sp. str. 39 prokMSA_id:72158 AJ295713.1 Arctic seawater isolate str. R7076 prokMSA_id:73595 AJ244732.1 Pseudoalteromonas sp. str. V4.BE.18 = MM_2390 V4.BE.18 prokMSA_id:77391 AY170899.1 Psychrophilic marine isolate str. DY3 prokMSA_id:83467 AF539770.1 Pseudoalteromonas sp. str. R46 prokMSA_id:84561 AF539774.1 Pseudoalteromonas sp. str. R30 prokMSA_id:84933 AF539768.1 Pseudoalteromonas sp. str. E48 prokMSA_id:85564 AF539766.1 Pseudoalteromonas sp. str. E29 prokMSA_id:85635 AY230003.1 Pseudoalteromonas antarctica str. PS18 prokMSA_id:85898 AF539771.1 Pseudoalteromonas sp. str. E30 prokMSA_id:86092 AF539767.1 Pseudoalteromonas sp. str. E47 2.43.5.4.1.1.8584 OTU 2 seqs prokMSA_id:25426 AJ292528.1 Marinobacter sp. Trimyema-2 2 prokMSA_id:73167 AF288157.2 Marinobacter lutaoensis str. T5054; CCRC 17087; JCM 11179T 2.43.5.4.1.1.8591 OTU 1 seq prokMSA_id:17452 AF465359.1 Pseudoalteromonas sp. str. UST991130-041 2.43.5.4.1.1.8594 OTU 1 seq prokMSA_id:66955 AF482686.1 Marinobacter sp. str. SBS 2.43.5.4.1.1.8600 OTU 54 seqs prokMSA_id:8836 AF001375.1 Colwellia psychrerythraea str. ATCC27364; ACAM 550T prokMSA_id:8840 U85841.1 Colwellia psychrerythraea str. ACAM 604 prokMSA_id:8841 U85842.1 Colwellia psychrerythraea str. IC064 prokMSA_id:8843 AB011364.1 Colwellia psychrerythraea str. ATCC27364 prokMSA_id:36120 AF173964.1 Colwellia psychrerythraea str. KT0919 prokMSA_id:50180 AF396670.1 Colwellia psychrerythraea 34H prokMSA_id:61116 AF530145.1 Colwellia psychrerythraea str. MGP-41 prokMSA_id:66627 AY094497.1 extracted chamber connected to Ocean Drilling Program site 892b clone 1-46 proteobacterium prokMSA_id:79094 AF505737.1 Boston Harbor surface water isolate str. UMB8H prokMSA_id:79163 AF505738.1 Boston Harbor surface water isolate str. UMB10B UMB10B prokMSA_id:79209 AF505733.1 Boston Harbor surface water isolate str. UMB7D UMB7D prokMSA_id:79265 AF505723.1 Boston Harbor surface water isolate str. UMB3E UMB3E prokMSA_id:79426 AF505728.1 Boston Harbor surface water isolate str. UMB6B UMB6B prokMSA_id:79516 AF505732.1 Boston Harbor surface water isolate str. UMB7C UMB7C prokMSA_id:79584 AF505731.1 Boston Harbor surface water isolate str. UMB7A UMB7A prokMSA_id:80356 AF468392.1 Arctic sea ice ARK10102 prokMSA_id:80364 AF468310.1 Arctic sea ice; northern Fram Strait clone ARKICE-28 prokMSA_id:80708 AF468288.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-71 prokMSA_id:80830 AF468284.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-94 prokMSA_id:80889 AF468254.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-61 prokMSA_id:81146 AY167340.1 Psychrobacter sp. str. ARK10133 prokMSA_id:81177 AY167265.1 Colwellia rossensis str. ANT8228 prokMSA_id:81289 AY167297.1 Colwellia sp. str. ANT9196 prokMSA_id:81569 AY167295.1 Colwellia sp. str. ANT9187 prokMSA_id:81575 AY167304.1 Colwellia rossensis str. ANT9246 prokMSA_id:81600 AY165573.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-31 sea prokMSA_id:81615 AY165568.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-79 sea prokMSA_id:81632 AY167329.1 Colwellia sp. str. ANT9381 prokMSA_id:81641 AY167307.1 Colwellia rossensis str. ANT9250 prokMSA_id:81643 AY167330.1 Colwellia sp. str. ANT9407 prokMSA_id:81695 AY167302.1 Colwellia rossensis str. ANT9228 prokMSA_id:81749 AY167298.1 Colwellia rossensis str. ANT9203 prokMSA_id:81807 AY167311.1 Colwellia rossensis str. ANT9279 prokMSA_id:81818 AY167264.1 Colwellia sp. str. ANT8203 prokMSA_id:82145 AY167251.2 Roseobacter sp. str. ANT8230 prokMSA_id:82218 AY167291.1 Colwellia sp. str. ANT9176 prokMSA_id:82290 AY167305.1 Colwellia rossensis str. ANT9247 prokMSA_id:82300 AY167269.1 Colwellia rossensis str. ANT8283 prokMSA_id:82309 AY167332.1 Colwellia rossensis str. ANT9271 prokMSA_id:82359 AY167299.1 Colwellia sp. str. ANT9207 prokMSA_id:82428 AY167272.1 Colwellia sp. str. ANT9037 prokMSA_id:82439 AY167266.1 Colwellia sp. str. ANT8258 prokMSA_id:82465 AY167268.1 Colwellia sp. str. ANT8279 prokMSA_id:94879 AY373421.1 deep sea sediment clone A84 prokMSA_id:95362 AY375079.1 deep sea sediment clone B98 prokMSA_id:96457 AY375136.1 deep sea sediment clone D12 prokMSA_id:97399 AY375086.1 deep sea sediment clone B136 prokMSA_id:97603 AB094412.1 Colwellia piezophila str. Y223G prokMSA_id:97654 AY375071.1 deep sea sediment clone B344 prokMSA_id:101125 AY577895.1 roots new deep sea polychaete (Osedax frankpressi gen n. sp. novum) clone enrich255-4 prokMSA_id:101791 AY577899.1 roots new deep sea polychaete (Osedax frankpressi gen n. sp. novum) clone enrich255-9 prokMSA_id:104724 AY167294.1 Colwellia sp. str. ANT9183a prokMSA_id:107312 AY548982.1 marine bone clone enrich255-1 prokMSA_id:107885 AY781156.1 Colwellia sp. str. NJ341 2.43.5.4.1.1.8602 OTU 1 seq prokMSA_id:47224 AF195472.1 September collection clone kps58rc 2.43.5.4.1.1.8633 OTU 1 seq prokMSA_id:23426 AB059266.1 Psychromonas sp. str. NTW-2 2.43.5.4.1.1.8643 OTU 29 seqs prokMSA_id:8948 U15114.1 hydrothermal vent clone PVB_18 prokMSA_id:8949 AF118019.1 Pseudoalteromonas sp. str. RE10F/5 prokMSA_id:8950 AB029824.1 Pseudoalteromonas sp. S511-1 prokMSA_id:22024 AF366050.1 marine str. SWAT5 prokMSA_id:29044 AF227238.1 Pseudoalteromonas sp. str. A28 prokMSA_id:30320 AF224867.1 clone Car70fc prokMSA_id:34196 AB055785.1 Pseudoalteromonas sp. str. Bsur-1 prokMSA_id:36441 AY028199.1 exposed to diatom detritus isolate str. Tw-4 Tw-4 prokMSA_id:37218 AF195465.1 Pseudoalteromonas espejiana str. kpa58 prokMSA_id:55382 AY133423.1 coastal Antarctic sediment clone BB2_15 prokMSA_id:60461 AY007201.1 Alteromonas sp. O-TC11A str. O-TC11() prokMSA_id:64941 AY095801.1 prokMSA_id:64943 AY095799.1 prokMSA_id:64951 AY095794.1 prokMSA_id:69339 AF513404.1 Pseudoalteromonas sp. str. 33-3 prokMSA_id:74244 AY028203.1 exposed to diatom detritus isolate str. Tw-8 prokMSA_id:76654 AY164641.1 Pseudoalteromonas sp. str. KJ 2-4 prokMSA_id:80967 AY220709.1 water column Porcupine Abyssal Plain Northeast Atlantic Ocean clone WCPAP5 prokMSA_id:89387 AJ575803.1 Bacillus sp. str. LEBHAM-01 prokMSA_id:93544 AJ551132.1 Pseudoalteromonas sp. es32 prokMSA_id:97834 AY394862.1 Pseudoalteromonas sp. str. EPR 1 prokMSA_id:100139 AY626829.1 Pseudoalteromonas sp. str. NJ5-1-2B prokMSA_id:101562 AJ555627.1 Pseudoalteromonas sp. str. D41 prokMSA_id:105200 AY626839.1 Pseudoalteromonas sp. str. SS 2-8 prokMSA_id:105204 AY515440.1 bulk water German Wadden Sea May 1999 isolate str. GWS-BW-H31M prokMSA_id:107013 AY548980.1 marine bone clone enrich255-14 prokMSA_id:108688 AY771715.1 Pseudoalteromonas porphyrae str. S2-65 prokMSA_id:109217 AB180385.1 Pseudoalteromonas sp. str. No. 53 prokMSA_id:109682 AJ874348.1 Pseudoalteromonas sp. str. 01/197 2.43.5.4.1.1.8659 OTU 1 seq prokMSA_id:19556 AB022708.1 Facultatively oligotrophic isolate str. PFO-2 2.43.5.4.1.1.8679 OTU 1 seq prokMSA_id:79355 AF382137.1 bacterioplankton clone ZA3412c 2.43.5.4.1.1.8695 OTU 1 seq prokMSA_id:80428 AF468296.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-34 2.43.5.4.1.1.8713 OTU 3 seqs prokMSA_id:26362 AF235125.1 Alteromonas sp. str. KT0232 prokMSA_id:37967 AY028197.1 exposed to diatom detritus isolate str. Tw-2 Tw-2 prokMSA_id:73001 AF173962.1 Pseudoalteromonas str. KT0914 2.43.5.4.1.1.8726 OTU 1 seq prokMSA_id:33570 AF424111.1 clone MERTZ_2CM_259 2.43.5.4.1.1.8753 OTU 11 seqs prokMSA_id:35914 AB042502.2 Halophilic isolate str. TAG C7 prokMSA_id:59885 AJ440214.1 Idiomarina baltica str. OS145 prokMSA_id:60389 AF513450.1 Idiomarina sp. str. LA26 prokMSA_id:73468 AF254111.1 unclassified north atlantic continental slope sediments at 1500 m depth isolate str. DIII1c DIII1c prokMSA_id:100611 AB167013.1 Idiomarina sp. str. NT N90 prokMSA_id:102015 AB167034.1 Idiomarina sp. str. NT N118 prokMSA_id:102307 AB167036.1 Idiomarina sp. str. NT N121 prokMSA_id:102327 AY526861.1 Idiomarina fontislapidosi str. F23 prokMSA_id:103432 AY553079.1 Idiomarina loihiensis str. GSP37 prokMSA_id:105205 AB167020.1 Idiomarina sp. str. NT N98 prokMSA_id:113453 AY918869.1 Idiomarina sp. str. SBT333 2.43.5.4.1.1.8762 OTU 1 seq prokMSA_id:74015 AJ240916.1 5' clone CHAB-V-29 2.43.5.4.1.1.8767 OTU 1 seq prokMSA_id:61967 AJ244728.1 France:Nice isolate str. V4.MS.24 = MM_2742 V4.MS.24 2.43.5.4.1.1.8768 OTU 1 seq prokMSA_id:51156 AF195471.1 September collection clone kps64f 2.43.5.4.1.1.8808 OTU 1 seq prokMSA_id:8834 AB013826.1 NB1-e clone NB1-e 2.43.5.4.1.1.8819 OTU 9 seqs prokMSA_id:8832 D87345.1 Unculturable Mariana no. 1 clone prokMSA_id:9054 AB015521.1 deep-sea sediment clone BD1-9 prokMSA_id:9055 AB015561.1 deep-sea sediment clone BD4-11 prokMSA_id:9056 AB015572.1 deep-sea sediment clone BD6-1 prokMSA_id:67499 AY092077.1 Idiomarina loihiensis str. 53 prokMSA_id:70055 AF235112.1 North Sea; NOR1 isolate str. KT11ds7 prokMSA_id:76315 AJ294341.1 HY-68 HY-54 prokMSA_id:84841 AJ557863.1 seawater prokMSA_id:106653 AJ557852.1 seawater 2.43.5.4.1.1.8825 OTU 1 seq prokMSA_id:8838 AF001376.1 Colwellia-like sp. isolate str. IC169 2.43.5.4.1.1.8863 OTU 25 seqs prokMSA_id:8891 Y18228.1 Alteromonas macleodii str. DSM 6062 prokMSA_id:8894 Y18231.1 Alteromonas macleodii prokMSA_id:8899 AB010844.1 strain 34 clone HTC 34 prokMSA_id:8900 AB015135.1 Alteromonas sp. str. KE10 prokMSA_id:8901 AB010855.1 strain HTC036 clone HTC036 prokMSA_id:8903 AB010857.1 strain HTC032 clone HTC032 prokMSA_id:23327 AJ391192.1 Alteromonas sp. str. AS-31 prokMSA_id:26409 AF354598.1 marine clone Arctic95A-15 prokMSA_id:33294 AJ310691.1 smoked salmon clone 318 prokMSA_id:35156 AJ391191.1 Alteromonas sp. str. AS-30 prokMSA_id:44702 AF386742.1 Alteromonas sp. str. 4BT prokMSA_id:45350 AJ240919.1 5' clone CHAB-VI-3 prokMSA_id:46469 AJ294360.1 Alteromonas sp. str. 407-2 prokMSA_id:55521 AJ414399.1 Alteromonas macleodii subsp. fijiensis str. medioatlantica MS907 subsp. prokMSA_id:55687 AF513940.1 Alteromonadaceae clone LAS-B5N prokMSA_id:60377 AF513462.1 Alteromonadaceae isolate str. PH5 prokMSA_id:60990 AF529061.1 Alteromonas marina str. SW-49 prokMSA_id:60991 AF529060.1 Alteromonas marina str. SW-47 prokMSA_id:62501 AF513939.1 Alteromonadaceae clone LAS-B15N prokMSA_id:63591 AB078014.1 Alteromonas sp. str. SHY1-1 prokMSA_id:71090 AF427478.1 Alteromonas sp. str. ANSW2-2 prokMSA_id:71568 AJ319537.1 Alteromonas macleodii subsp. abyssi str. HYD657 subsp. prokMSA_id:71626 AF288360.1 Alteromonas alvinellae str. HY757 prokMSA_id:73913 AF359529.1 Alexandrium tamarense NEPCC 407 prokMSA_id:83231 AY207503.1 Aestuariibacter halophilus str. JC2043 2.43.5.4.1.1.8900 OTU 1 seq prokMSA_id:8864 U15115.1 hydrothermal vent clone PVB_OTU_12 2.43.5.4.1.1.8904 OTU 1 seq prokMSA_id:32285 AB059263.1 psychrophile deep-sea sediment south-western Pacific isolate str. PS12-4 PS12-4 2.43.5.4.1.1.8908 OTU 1 seq prokMSA_id:8868 AF159672.1 related to Alteromonas group 2.43.5.4.1.1.8916 OTU 2 seqs prokMSA_id:9042 U91546.1 Shewanella algae str. IAM 14159 prokMSA_id:9064 U91545.1 Shewanella algae str. 43940 2.43.5.4.1.1.8921 OTU 1 seq prokMSA_id:9017 AB013839.1 Shewanella sp. 3-8.C 2.43.5.4.1.1.8923 OTU 2 seqs prokMSA_id:26868 AJ294747.1 Thalassomonas viridans str. XOM5 CECT 5082 DSM 13753 prokMSA_id:36824 AJ294748.1 Thalassomonas viridans str. XOM25T CECT 5083T DSM 13754T 2.43.5.4.1.1.8928 OTU 1 seq prokMSA_id:44150 X92129.1 Crater Lake isolate 11C1 2.43.5.4.1.1.8932 OTU 1 seq prokMSA_id:8946 AF045560.1 Pseudoalteromonas antarctica str. N-1 2.43.5.4.1.1.8958 OTU 1 seq prokMSA_id:9016 D21221.1 Vibrio species 2.43.5.4.1.1.8970 OTU 15 seqs prokMSA_id:47176 AJ295716.1 Arctic seawater isolate str. R9879 prokMSA_id:79900 AF468292.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-115 prokMSA_id:80204 AF468251.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-52 prokMSA_id:80755 AF468389.2 Arctic sea ice ARK10047 prokMSA_id:80881 AF468399.1 Arctic sea ice ARK10218 prokMSA_id:81035 AY167303.1 Glaciecola sp. str. ANT9230 prokMSA_id:81075 AY167293.1 Glaciecola sp. str. ANT9183b prokMSA_id:81097 AY167300.1 Glaciecola sp. str. ANT9218 prokMSA_id:81148 AY165569.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-97 sea prokMSA_id:81511 AY167280.1 Glaciecola sp. str. ANT9094 prokMSA_id:81573 AY167285.1 Glaciecola sp. str. ANT9148 prokMSA_id:81756 AY165572.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-32 sea prokMSA_id:81831 AY167271.1 Glaciecola sp. str. ANT9029 prokMSA_id:82072 AY167292.1 Glaciecola sp. str. ANT9177 prokMSA_id:82435 AY167270.1 Glaciecola sp. str. ANT8284 2.43.5.4.1.1.8975 OTU 8 seqs prokMSA_id:17084 AF277504.1 polar sea ice clone SIC.8123 prokMSA_id:37660 AF132858.1 Pseudoalteromonas sp. str. 2b (ACAM 515) prokMSA_id:37970 AB016268.1 Alteromonas sp. str. NIBH P1M3 prokMSA_id:40554 AF300975.1 South Atlantic Bight; approximately 200 miles offshore 180 m water on NO3 as sole nitrogen source isolate str. C16S prokMSA_id:43190 AF293975.1 decomposing cuttlefish isolate str. x3 prokMSA_id:83123 AF539769.1 Pseudoalteromonas sp. str. R44 prokMSA_id:97790 AY383040.1 Pseudoalteromonas sp. str. 2-3-6-2 prokMSA_id:111346 AY864628.1 Pseudoalteromonas sp. str. U50 2.43.5.4.1.1.8978 OTU 6 seqs prokMSA_id:79998 AF468394.1 Arctic sea ice ARK10128 prokMSA_id:80404 AF468395.1 Arctic sea ice ARK10130 prokMSA_id:80564 AF468393.1 Arctic sea ice ARK10108 prokMSA_id:81949 AY167296.1 Glaciecola punicea str. ANT9189 prokMSA_id:82266 AY167309.1 Glaciecola sp. str. ANT9258 prokMSA_id:82306 AY167323.1 Glaciecola sp. str. ANT9159 2.43.5.4.1.1.8992 OTU 1 seq prokMSA_id:8882 AF114504.1 attached marine recovered depth 400m clone 25 proteobacterium 2.43.5.4.1.1.9003 OTU 9 seqs prokMSA_id:81210 AY167284.2 Glaciecola sp. str. ANT9142 prokMSA_id:81369 AY167275.1 Glaciecola sp. str. ANT9061 prokMSA_id:81376 AY167288.1 Glaciecola sp. str. ANT9166 prokMSA_id:81720 AY167283.1 Glaciecola sp. str. ANT9133 prokMSA_id:81743 AY167290.1 Glaciecola sp. str. ANT9175 prokMSA_id:81777 AY167334.1 Glaciecola sp. str. ANT9081 prokMSA_id:81795 AY167287.1 Glaciecola sp. str. ANT9154 prokMSA_id:82048 AY167277.1 Glaciecola sp. str. ANT9085 prokMSA_id:82405 AY167274.1 Glaciecola sp. str. ANT9055 2.43.5.4.1.1.9009 OTU 1 seq prokMSA_id:9027 AF022402.1 Shewanella sp. ANG.209 str. ANG.strain 209 ANG.209 2.43.5.4.1.1.9011 OTU 1 seq prokMSA_id:9029 AF022413.1 Shewanella sp. ANG.231 str. ANG.strain 231 2.43.5.4.1.1.9019 OTU 1 seq prokMSA_id:33026 AB022207.1 Marine adapted facultatively oligotrophic isolate str. PAF-2 2.43.5.4.1.1.9023 OTU 1 seq prokMSA_id:8893 Y18230.1 Alteromonas macleodii 2.43.5.4.1.1.9024 OTU 1 seq prokMSA_id:8895 Y18233.1 Alteromonas macleodii str. CH-460 2.43.5.4.1.1.9035 OTU 2 seqs prokMSA_id:83738 AF500206.1 Microbulbifer sp. str. CJ11049 prokMSA_id:107614 AB124836.1 Microbulbifer sp. str. JAMB-A94 2.43.5.4.1.1.9058 OTU 3 seqs prokMSA_id:8908 X82136.1 Pseudoalteromonas carrageenovora prokMSA_id:8916 AF069666.1 North Sea isolate str. 12-13 prokMSA_id:85933 AF539775.1 Pseudoalteromonas sp. str. RE2-12b 2.43.5.4.1.1.9067 OTU 1 seq prokMSA_id:9067 AF006669.1 Shewanella algae str. ACM 4733 2.43.5.4.1.1.9069 OTU 1 seq prokMSA_id:8833 AF154057.1 Eubostrichus dianae epibacterium 1_20 2.43.5.4.1.1.9073 OTU 1 seq prokMSA_id:8799 U14584.1 Flectobacillus sp. 2.43.5.4.1.1.9102 OTU 1 seq prokMSA_id:45973 AF052741.1 Idiomarina zobellii str. KM231(EI5) 2.43.5.4.1.1.9111 OTU 1 seq prokMSA_id:84384 AF539773.1 Pseudoalteromonas sp. str. E36 2.43.5.4.1.1.9132 OTU 1 seq prokMSA_id:8854 L10950.1 marine snow clone agg53 2.43.5.4.1.1.9134 OTU 1 seq prokMSA_id:8404 U58338.1 Microbulbifer hydrolyticus str. IRE-31 2.43.5.4.1.1.9143 OTU 43 seqs prokMSA_id:8909 AB019946.1 Pseudoalteromonas sp. str. FU0605 prokMSA_id:8910 AF069667.1 North Sea isolate str. H120 prokMSA_id:8912 X82134.1 Pseudoalteromonas atlantica prokMSA_id:8918 X82139.1 Pseudoalteromonas haloplanktis prokMSA_id:8919 AB019947.1 Pseudoalteromonas sp. str. AR0307 prokMSA_id:8925 AF082562.1 Pseudoalteromonas elyakovii str. KMM162T prokMSA_id:8929 U85859.1 Pseudoalteromonas sp. str. IC013 prokMSA_id:8930 U85860.1 Pseudoalteromonas sp. str. MB6-05 prokMSA_id:8932 AF116188.1 Pseudoalteromonas elyakovii str. O22 prokMSA_id:8934 AF155038.1 Pseudoalteromonas sp. ER72M2 prokMSA_id:8947 AF082564.1 Pseudoalteromonas distincta str. KMM638T prokMSA_id:17585 AB000389.1 Pseudoalteromonas elyakovii str. H-4 prokMSA_id:18568 AF295035.1 Pseudoalteromonas sp. str. P-1P41 prokMSA_id:18661 AF173963.1 Pseudoalteromonas atlantica str. KT0910 prokMSA_id:20215 AJ391202.1 Pseudoalteromonas sp. str. AS-41 prokMSA_id:22902 AF043742.1 Pseudoalteromonas distincta str. KMM 638T; ATCC700518 prokMSA_id:23058 AF295034.1 Pseudoalteromonas sp. str. EH-2-1 prokMSA_id:30396 AY028200.1 exposed to diatom detritus isolate str. Tw-5 Tw-5 prokMSA_id:32584 AB038036.1 Pseudoalteromonas sp. str. SUR560 prokMSA_id:33435 AY028206.1 exposed to diatom detritus isolate str. BB2AT2 BB2AT2 prokMSA_id:35558 AJ314843.1 Pseudoalteromonas sp. str. TE1-1 prokMSA_id:37455 AF316142.1 Pseudoalteromonas issachenkonii str. KMM 3558; F2 prokMSA_id:39984 AF214729.1 Pseudoalteromonas subsp. tetraodonis str. KMM 458 prokMSA_id:46309 AY040229.1 Pseudoalteromonas paragorgicola str. KMM3548 prokMSA_id:46753 AJ417594.1 Pseudoalteromonas agarivorans str. KMM 255 prokMSA_id:50106 AB051165.1 Pseudoalteromonas sp. str. KM-Y92-001 prokMSA_id:51317 AB049728.1 Pseudoalteromonas atlantica str. AR06 prokMSA_id:52453 AJ314842.1 Pseudoalteromonas sp. str. TE2-2 prokMSA_id:61131 AF530129.1 Pseudoalteromonas sp. str. MGP-2 prokMSA_id:70360 AF254110.1 thiosulfate-oxidizing (Pseudoalteromonas) north atlantic abyssal sediments at 4500 m depth isolate str. AIII3* AIII3* prokMSA_id:71431 AJ244748.1 Pseudoalteromonas sp. str. V4.BE.07 = MM_2379 V4.BE.07 prokMSA_id:71998 AJ295712.1 Arctic seawater isolate str. R7852 prokMSA_id:77092 AJ519790.1 Pseudoalteromonas sp. AC-144 str. AC-444 prokMSA_id:80048 AB100883.1 Pseudoalteromonas atlantica str. H6-2-4 prokMSA_id:81950 AY167333.1 Pseudoalteromonas sp. str. ANT9388 prokMSA_id:82882 AF539772.1 Pseudoalteromonas sp. str. E33 prokMSA_id:83200 AY243365.1 Pseudoalteromonas sp. str. CAM25 prokMSA_id:83556 AJ557870.1 seawater prokMSA_id:83930 AJ557853.1 seawater prokMSA_id:84567 AB106189.1 Pseudoalteromonas sp. str. FRA000006 prokMSA_id:84881 AY177718.1 Alteromonadaceae T8 prokMSA_id:86352 AY243366.1 Pseudoalteromonas sp. str. CAM36 prokMSA_id:86404 AJ557855.1 seawater 2.43.5.4.1.1.9145 OTU 2 seqs prokMSA_id:8952 X82135.1 Pseudoalteromonas aurantia prokMSA_id:8957 X82137.1 Pseudoalteromonas citrea 2.43.5.4.1.1.9147 OTU 1 seq prokMSA_id:9041 U39398.1 "Shewanella ACAM122" 2.43.5.4.1.1.9148 OTU 7 seqs prokMSA_id:8954 AF172989.1 Pseudoalteromonas sp. str. UL14 prokMSA_id:8955 AF172990.1 Pseudoalteromonas sp. str. UL15 prokMSA_id:8956 AF172991.1 Pseudoalteromonas sp. str. UL1 prokMSA_id:8964 AF172987.1 Pseudoalteromonas ulvae str. UL12 prokMSA_id:8965 AF172988.1 Pseudoalteromonas ulvae str. UL13 prokMSA_id:44193 AF277522.1 polar sea ice clone SIC.999 prokMSA_id:85529 AF539776.1 Pseudoalteromonas sp. str. R6 2.43.5.4.1.1.9149 OTU 11 seqs prokMSA_id:8967 AF144036.1 Pseudoalteromonas maricaloris str. KMM636; LMG 19692; CIP 106859 prokMSA_id:8968 AF007286.1 Pseudoalteromonas peptidolytica str. F12-50-A1 prokMSA_id:8969 AF081498.1 Pseudoalteromonas piscicida str. Cura-d prokMSA_id:8970 AF030381.1 Pseudoalteromonas sp. str. Y prokMSA_id:8971 X82215.1 Pseudoalteromonas piscicida str. ATCC 15057 prokMSA_id:8972 X82147.1 Pseudoalteromonas rubra prokMSA_id:23900 AF297662.1 Pseudoalteromonas piscicida prokMSA_id:26328 AF297958.1 Pseudoalteromonas flavipulchra str. NCIMB2033; KMM 3630; LMG 20361 prokMSA_id:39091 AF297959.1 Pseudoalteromonas piscicida str. IAM12932T prokMSA_id:71138 AJ391204.1 Pseudoalteromonas sp. str. AS-43 prokMSA_id:84026 AF539777.1 Pseudoalteromonas sp. str. RE2-5b 2.43.5.4.1.1.9152 OTU 1 seq prokMSA_id:8405 Z31658.1 Terredinibacter species 2.43.5.4.1.1.9158 OTU 1 seq prokMSA_id:8406 AF055269.1 Saccharophagus degradans 2.43.5.4.1.1.9159 OTU 1 seq prokMSA_id:8407 AB015541.1 deep-sea sediment clone BD2-13 2.43.5.4.1.1.9163 OTU 1 seq prokMSA_id:8408 AB013256.1 deep-sea sediment clone NKB4 2.43.5.4.1.1.9177 OTU 8 seqs prokMSA_id:39858 AJ293820.1 Glaciecola polaris str. LMG 21857 prokMSA_id:65357 AJ488501.1 Glaciecola mesophila str. KMM 241 prokMSA_id:74198 AB049729.1 Glaciecola sp. str. HA02 prokMSA_id:79499 AF505735.1 Boston Harbor surface water isolate str. UMB8E UMB8E prokMSA_id:88454 AJ548478.1 Glaciecola polaris str. LMG 21854 prokMSA_id:89023 AJ548479.1 Glaciecola mesophila str. LMG 21855 prokMSA_id:100763 AY515434.1 bulk water German Wadden Sea May 1999 isolate str. GWS-BW-H8gM prokMSA_id:114081 AY902199.1 Glaciecola sp. str. B20 2.43.5.4.1.1.9203 OTU 1 seq prokMSA_id:81968 AY194066.1 Thalassomonas ganghwensis str. JC2041 2.43.5.4.1.1.9205 OTU 1 seq prokMSA_id:19398 AF354597.1 marine clone Arctic96B-17 2.43.5.4.1.1.9209 OTU 1 seq prokMSA_id:24004 AF425748.1 Colwellia sp. clone MERTZ_0CM_312 2.43.5.4.1.1.9218 OTU 14 seqs prokMSA_id:8915 AF069665.1 North Sea isolate str. H7 prokMSA_id:8935 X67024.1 Pseudoalteromonas haloplanktis prokMSA_id:16478 AF456337.1 Pseudoalteromonas sp. str. LT13 prokMSA_id:17633 AF419348.1 Pseudoalteromonas sp. str. PF30-23 prokMSA_id:20578 X86466.1 Pseudoalteromonas sp. str. JLN-U1 prokMSA_id:23413 AF280818.1 Pseudoalteromonas sp. DC1 prokMSA_id:25530 AF218246.1 Pseudoalteromonas sp prokMSA_id:27905 AF366042.1 marine str. BB2AT2 prokMSA_id:41181 AJ314845.2 Pseudoalteromonas sp. str. SE1-2red prokMSA_id:42494 AJ314844.1 Pseudoalteromonas sp. str. SE1-2ox prokMSA_id:71344 AF359543.1 Alexandrium tamarense PCC 173a prokMSA_id:75690 AJ519789.1 Pseudoalteromonas sp. str. AC-205 prokMSA_id:82342 AY167328.1 Pseudoalteromonas sp. str. ANT9377 prokMSA_id:86246 AF539765.1 Pseudoalteromonas sp. str. R14 2.43.5.4.1.1.9222 OTU 7 seqs prokMSA_id:9001 AB013822.1 Shewanella sp. 16.k prokMSA_id:9004 AF003549.1 Shewanella woodyi str. MS32 prokMSA_id:9005 AF003548.1 Shewanella woodyi str. MS1 prokMSA_id:9020 X54744.1 Barophile prokMSA_id:9035 X82132.1 Shewanella hanedai prokMSA_id:9036 U85908.1 Shewanella hanedai str. ACAM 585 IC050 prokMSA_id:9037 AF187080.1 Shewanella hanedai str. KMG427 2.43.5.4.1.1.9227 OTU 1 seq prokMSA_id:80118 AB094857.1 subseafloor sediments Sea Okhotsk clone OHKB4.78 2.43.5.4.1.1.9230 OTU 1 seq prokMSA_id:82404 AY165576.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-62 sea 2.43.5.4.1.1.9236 OTU 1 seq prokMSA_id:8880 AF114501.1 attached marine recovered surface clone 18 proteobacterium 2.43.5.4.1.1.9239 OTU 5 seqs prokMSA_id:79688 AF468400.1 Arctic sea ice ARK10228 prokMSA_id:79693 AF468286.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-100 prokMSA_id:79868 AF468402.1 Arctic sea ice ARK10251 prokMSA_id:79964 AF468403.1 Arctic sea ice ARK10296 prokMSA_id:82935 AJ441002.1 lake microbial mat isolate str. R-9035 2.43.5.4.1.1.9247 OTU 3 seqs prokMSA_id:9077 AF145921.1 Shewanella japonica str. KMM 3299 prokMSA_id:87528 AF500075.1 Shewanella pacifica str. KMM 3597 prokMSA_id:87894 AF500076.1 Shewanella pacifica str. KMM 3590 2.43.5.4.1.1.9248 OTU 1 seq prokMSA_id:38050 AF424080.1 Pseudoalteromonas sp. clone MERTZ_2CM_95 2.43.5.4.1.1.9254 OTU 1 seq prokMSA_id:37115 AJ292527.1 Marinobacter sp. Trimyema-1 1 2.43.5.4.1.1.9288 OTU 15 seqs prokMSA_id:8874 AF114495.1 attached marine recovered depth 400m clone proteobacterium prokMSA_id:8877 AF114498.1 attached marine recovered surface clone 14 proteobacterium prokMSA_id:8879 AF114500.1 attached marine recovered deep chlorophyll maximum depth clone 18 proteobacterium prokMSA_id:8883 AF114505.1 attached marine recovered deep chlorophyll maximum depth clone 2 proteobacterium prokMSA_id:8884 AF114506.1 attached marine recovered depth 400m clone 1 proteobacterium prokMSA_id:8885 AF114507.1 attached marine recovered depth 400m clone 5 proteobacterium prokMSA_id:8892 Y18229.1 Alteromonas macleodii prokMSA_id:8896 Y18234.1 Alteromonas macleodii str. CH-516 prokMSA_id:22311 AB049730.1 Alteromonas sp. str. TO01 prokMSA_id:26192 AJ294361.1 Alteromonas sp. str. 2c3 prokMSA_id:62005 AJ244758.1 Alteromonas sp. str. V4.BE.32 = MM_2275 prokMSA_id:67709 AB072388.1 Alteromonas sp. str. KC98716-13 prokMSA_id:72274 AJ244756.1 Alteromonas sp. str. V4.ME.16 = MM_2330 prokMSA_id:73259 AJ295715.1 Alteromonas stellipolaris str. LMG 21861 prokMSA_id:73896 AJ294362.1 Alteromonas sp. str. 253-19 2.43.5.4.1.1.9292 OTU 6 seqs prokMSA_id:8866 L10938.1 Alteromonas macleodii prokMSA_id:8875 AF114496.1 attached marine recovered deep chlorophyll maximum depth clone proteobacterium prokMSA_id:8876 AF114497.1 attached marine recovered surface clone 13 proteobacterium prokMSA_id:8881 AF114502.1 attached marine recovered depth 400m clone 20 proteobacterium prokMSA_id:72384 AF239705.1 Pseudoalteromonas sp. KT0812A prokMSA_id:109436 AY700607.1 Australia: Great Barrier Reef clone PDA-OTU9 2.43.5.4.1.1.9298 OTU 3 seqs prokMSA_id:69611 AF466889.1 seawater clone prokMSA_id:84028 AY241421.1 Pseudoalteromonas sp. str. UST020129-026 prokMSA_id:112308 AY028198.1 exposed to diatom detritus isolate str. Tw-3 2.43.5.4.1.1.9324 OTU 14 seqs prokMSA_id:8906 U85862.1 Pseudoalteromonas sp. str. SW29 prokMSA_id:8939 X74709.1 Vibrio marinus prokMSA_id:8963 U80834.1 Pseudoalteromonas sp. str. S9 prokMSA_id:8966 X82141.1 "Pseudomonas piscicida" prokMSA_id:31455 AF316890.1 Pseudoalteromonas ruthenica str. KMM290 prokMSA_id:36812 AB055794.1 Pseudoalteromonas sp. str. Edeep-1 prokMSA_id:40223 AF316891.1 Pseudoalteromonas ruthenica str. KMM300 prokMSA_id:43347 AB042419.1 symbiont prokMSA_id:43482 AJ391190.1 Pseudoalteromonas sp. str. AS-29 prokMSA_id:79319 AF505741.1 Boston Harbor surface water isolate str. UMB11F UMB11F prokMSA_id:103840 AY626830.1 Pseudoalteromonas sp. str. QD1-2 prokMSA_id:105990 AY648980.1 Pseudoalteromonas sp. BSs20141 prokMSA_id:107053 AY621063.1 Pseudoalteromonas sp. str. NJ6-3-1 prokMSA_id:111481 AF313497.1 Pseudoalteromonas sp. str. A3 2.43.5.4.1.1.9364 OTU 2 seqs prokMSA_id:8913 U85855.1 Pseudoalteromonas prydzensis str. MB8-11 prokMSA_id:79339 AF505745.1 Boston Harbor surface water isolate str. UMB20C UMB20C 2.43.5.4.1.1.9369 OTU 1 seq prokMSA_id:8961 X82144.1 Pseudoalteromonas luteoviolacea 2.43.5.4.1.1.9380 OTU 1 seq prokMSA_id:78569 AY180101.1 Marinobacter excellens str. KMM 3809 2.43.5.4.1.1.9384 OTU 12 seqs prokMSA_id:8976 X82142.1 Vibrio marinus prokMSA_id:8977 AJ132226.1 Moritella viscosa str. NVI 88/478T prokMSA_id:8978 AB011353.1 Moritella sp. ODA02 prokMSA_id:8979 AB011354.1 Moritella sp. HAS1123 prokMSA_id:8983 AB011358.1 Moritella sp. HAR13 prokMSA_id:8985 AB011360.1 Moritella sp. SC20 prokMSA_id:8986 AB011361.1 Moritella sp. SC22 prokMSA_id:8987 AB011362.1 Moritella sp. SC25 prokMSA_id:8988 AB011363.1 Moritella sp. SC27 prokMSA_id:8995 Y17574.1 Moritella viscosa str. 478/88 prokMSA_id:33284 AB038033.1 Moritella marina str. ATCC15381T prokMSA_id:72172 AJ252023.2 Moritella profunda str. 2674 2.43.5.4.1.1.9386 OTU 1 seq prokMSA_id:52182 AB016267.1 Alteromonas sp. str. NIBH P2M11 2.43.5.4.1.1.9393 OTU 1 seq prokMSA_id:22553 AJ288152.1 Shewanella sp. Bok-1-30-2 2.43.5.4.1.1.9402 OTU 2 seqs prokMSA_id:43155 AF235128.1 Alteromonas sp. str. KT1101 prokMSA_id:76778 AB097610.1 This strain is deposited as Alteromonas sp. National Institute Biosciences and Human-Technology (Tsukuba Japan) isolate str. SN-1009 SN-1009 2.43.5.4.1.1.9407 OTU 1 seq prokMSA_id:46300 AF425747.1 Colwellia sp. clone MERTZ_0CM_122 2.43.5.4.1.1.9414 OTU 1 seq prokMSA_id:8974 D89929.1 Pseudoalteromonas str. IAM14595T E8R 2.43.5.4.1.1.9416 OTU 1 seq prokMSA_id:84951 AF539786.1 marine isolate str. R8 2.43.5.4.1.1.9442 OTU 5 seqs prokMSA_id:49655 AF424147.1 clone MERTZ_0CM_226 prokMSA_id:59780 AY133412.1 coastal Antarctic sediment clone OB3_140 prokMSA_id:59783 AY133409.1 coastal Antarctic sediment clone BB2_126 prokMSA_id:91523 AY135666.1 Southern Ocean clone ANT18/2_88 prokMSA_id:91662 AY135664.1 Southern Ocean clone ANT18/2_35 2.43.5.4.1.1.9445 OTU 2 seqs prokMSA_id:46123 AF424133.1 Thalassomonas sp. clone MERTZ_0CM_55 prokMSA_id:79736 AY198115.1 Colwellia sp. HLC 2.43.5.4.1.1.9472 OTU 1 seq prokMSA_id:50517 AF424067.1 Colwellia sp. clone MERTZ_2CM_50 2.43.5.4.1.1.9484 OTU 1 seq prokMSA_id:20696 AF238495.1 Marinobacter sp 2.43.5.4.1.1.9486 OTU 1 seq prokMSA_id:65942 AF406617.1 Marine isolate str. GK-2001 2.43.5.4.1.1.9491 OTU 1 seq prokMSA_id:79530 AF505729.1 Boston Harbor surface water isolate str. UMB6D UMB6D 2.43.5.4.1.1.9501 OTU 1 seq prokMSA_id:81621 AB086226.1 sea water isolate str. BP-PH 2.43.5.4.1.1.9507 OTU 1 seq prokMSA_id:80254 AF468232.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-29 2.43.5.4.1.1.9508 OTU 1 seq prokMSA_id:9122 U91588.1 facultative barophile isolate str. CNPT3 2.43.5.4.1.1.9528 OTU 1 seq prokMSA_id:81127 AY165566.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/13-90 sea 2.43.5.4.1.1.9562 OTU 1 seq prokMSA_id:62499 AF513941.1 Alteromonadaceae clone PH-B55N 2.43.5.4.1.1.9575 OTU 1 seq prokMSA_id:42742 AF469279.1 clone 33-FL26B99 2.43.5.4.1.1.9576 OTU 1 seq prokMSA_id:19424 AF295593.1 Pseudoalteromonas sp. str. ACEM-4 2.43.5.4.1.1.9586 OTU 1 seq prokMSA_id:79941 AY190533.1 Shewanella gaetbuli str. TF-27 2.43.5.4.1.1.9591 OTU 1 seq prokMSA_id:8962 AF159671.1 related to Pseudoalteromonas group 2.43.5.4.1.1.9640 OTU 1 seq prokMSA_id:43095 AY028205.1 exposed to diatom detritus isolate str. Tw-10 Tw-10 2.43.5.4.1.1.9647 OTU 1 seq prokMSA_id:37948 X92127.1 Lake Bogoria isolate 10B1 2.43.5.4.1.1.9649 OTU 1 seq prokMSA_id:8898 U73724.1 gas vacuolate str. 214.6 2.43.5.4.2 Pseudoalteromonadaceae 3 seqs 2.43.5.4.2.1 sf_1 3 seqs 2.43.5.4.2.1.8254 OTU 1 seq prokMSA_id:50424 AB063324.1 Pseudoalteromonas sagamiensis str. B-10-31 2.43.5.4.2.1.9339 OTU 1 seq prokMSA_id:71107 AF284230.1 Pseudoalteromonas sp. str. 05 2.43.5.4.2.1.9627 OTU 1 seq prokMSA_id:23171 AF218245.1 Pseudoalteromonas sp 2.43.5.4.3 Shewanellaceae 121 seqs 2.43.5.4.3.1 sf_1 121 seqs 2.43.5.4.3.1.8201 OTU 1 seq prokMSA_id:83672 AB094597.1 Shewanella surugaensis str. c959 2.43.5.4.3.1.8581 OTU 39 seqs prokMSA_id:8996 D21222.1 Vibrio species prokMSA_id:8998 D63488.1 Vibrio sp. prokMSA_id:9007 D21223.1 Vibrio species prokMSA_id:9008 D21225.1 Vibrio species prokMSA_id:9012 AB008796.1 Shewanella benthica str. DB21MT-2 prokMSA_id:9013 AB013838.1 Shewanella sp. 7-10.B prokMSA_id:9021 D63824.1 Vibrio sp. prokMSA_id:9022 AB003189.1 Shewanella benthica str. PT99 prokMSA_id:9023 AF170794.1 Shewanella colwelliana str. ATCC33888 prokMSA_id:9025 U85907.1 Shewanella gelidimarina str. ACAM456 prokMSA_id:9026 AF022401.1 Shewanella sp. ANG.Sq2 str. ANG.strain Sq2 ANG.Sq2 prokMSA_id:9030 AF026460.1 Shewanella sp. SQ10 prokMSA_id:9031 AF026461.1 Shewanella sp. SQ26 prokMSA_id:18498 AF420312.1 Shewanella fidelis str. KMM 3582T prokMSA_id:40030 AF249336.1 Shewanella sp. GIT-33 str. 33 prokMSA_id:44629 AB038035.1 Shewanella sp. str. SG133 prokMSA_id:46491 AJ271657.1 Shewanella sp. D1Mn prokMSA_id:47896 AF420313.1 Shewanella fidelis str. KMM 3589 prokMSA_id:55880 AB081762.1 Shewanella sairae str. SM2-1 prokMSA_id:56028 AB081757.1 Shewanella marinintestina str. IK-1 prokMSA_id:60926 AB081761.1 Shewanella schlegeliana str. HRKC24 prokMSA_id:60928 AB081760.1 Shewanella schlegeliana str. HRKA1 prokMSA_id:60929 AB081759.1 Shewanella marinintestina str. 2T11 prokMSA_id:60933 AB081758.1 Shewanella marinintestina str. HZ17 prokMSA_id:61112 AF530149.1 Shewanella gelidimarina str. MGP-71 prokMSA_id:69583 AY170369.1 Shewanella fidelis str. KMM 3589 prokMSA_id:83294 AB094598.1 Shewanella kaireiae str. c931 prokMSA_id:88004 AF500079.1 Shewanella japonica KMM 3582 prokMSA_id:88382 AJ567580.1 deep-sea sediment clone MBAE19 prokMSA_id:89202 AJ567612.1 deep-sea sediment clone MBAE71 prokMSA_id:89280 AJ567602.1 deep-sea sediment clone MBAE53 prokMSA_id:89499 AJ567593.1 deep-sea sediment clone MBAE39 prokMSA_id:90286 AJ567601.1 deep-sea sediment clone MBAE52 prokMSA_id:100490 AB183492.1 Shewanella sp. str. 33F1 prokMSA_id:100644 AB183493.1 Shewanella sp. str. 33H2 prokMSA_id:101453 AB183498.1 Shewanella sp. str. T3607 prokMSA_id:105607 AB183502.1 Shewanella sp. str. T4609 prokMSA_id:105762 AB183503.1 Shewanella sp. str. T4611 prokMSA_id:112397 AB201475.1 Shewanella sedimentalis str. c941 2.43.5.4.3.1.8641 OTU 10 seqs prokMSA_id:8975 D21224.1 Vibrio species prokMSA_id:8989 AB008797.1 Moritella yayanosii str. DB21MT-5 prokMSA_id:8992 AB013840.1 Moritella sp. 9-3.G prokMSA_id:8994 AB013842.1 Shewanella sp. 7-1.E prokMSA_id:24239 AJ252022.1 Moritella abyssi str. 2693 prokMSA_id:70982 AF530133.1 Moritella sp. str. MGP-6 prokMSA_id:94578 AB120660.1 Moritella sp. str. 2D2 prokMSA_id:101456 AB183510.1 Moritella sp. str. T4715 prokMSA_id:101616 AB183499.1 Moritella sp. str. 38C1 prokMSA_id:102106 AB183514.1 Moritella sp. str. T5616 2.43.5.4.3.1.8662 OTU 70 seqs prokMSA_id:9047 U85906.1 Shewanella frigidimarina str. ACAM 600 IC010 prokMSA_id:9050 AF061557.1 Shewanella sp. str. Ac10 prokMSA_id:9057 X82133.1 Shewanella putrefaciens prokMSA_id:9060 AF039055.1 Shewanella oneidensis str. SP-22 prokMSA_id:9069 U91549.1 Shewanella putrefaciens str. A6 prokMSA_id:9070 U91552.1 Shewanella putrefaciens str. F137 prokMSA_id:9071 U91553.1 Shewanella putrefaciens str. NCTC 10695 prokMSA_id:9072 AF005252.1 Shewanella sp. str. MR-4 prokMSA_id:9073 AF005253.1 Shewanella sp. str. MR-7 prokMSA_id:9074 AF005254.1 Shewanella sp. str. MR-8 prokMSA_id:9098 U91550.1 Shewanella putrefaciens str. A31 prokMSA_id:9101 AF006672.1 Shewanella putrefaciens str. ACAM 577 prokMSA_id:9102 AF006670.1 Shewanella putrefaciens str. ACAM 574 prokMSA_id:9105 X95233.1 deep subsurface clone Aspo5 prokMSA_id:9106 U91551.1 Shewanella putrefaciens str. NCIMB 12577 prokMSA_id:9108 AF005255.1 Shewanella putrefaciens str. MR-30 prokMSA_id:9113 AF005251.1 Shewanella sp. str. MR-1 prokMSA_id:16931 AJ300833.1 Shewanella frigidimarina str. LMG19867 NF12 prokMSA_id:20504 AF132871.1 Shewanella frigidimarina str. ACAM 552 prokMSA_id:24664 AF039054.1 Shewanella oneidensis str. SP-7 prokMSA_id:29356 AB039739.1 Shewanella sp. str. SIS1 prokMSA_id:33931 AF387347.1 Shewanella oneidensis str. DML7 prokMSA_id:35898 AJ295714.1 Arctic seawater isolate str. R7216 prokMSA_id:37367 AF387349.1 Shewanella sp. str. 184 prokMSA_id:38945 AF132878.1 Shewanella frigidimarina str. ACAM 557 prokMSA_id:47655 AB039737.1 Shewanella sp. str. SIB1 prokMSA_id:55466 AE015723.1 Shewanella oneidensis str. MR-1 prokMSA_id:57774 AE015882.1 Shewanella oneidensis prokMSA_id:57775 AE015906.1 Shewanella oneidensis str. MR-1 prokMSA_id:57777 AE015881.1 Shewanella oneidensis str. MR-1 prokMSA_id:57778 AE015794.1 Shewanella oneidensis str. MR-1 prokMSA_id:57779 AE015853.1 Shewanella oneidensis str. MR-1 prokMSA_id:57780 AE015475.1 Shewanella oneidensis str. MR-1 prokMSA_id:57781 AE015470.1 Shewanella oneidensis str. MR-1 prokMSA_id:57784 AE015455.1 Shewanella oneidensis str. MR-1 prokMSA_id:74152 AJ300834.1 Shewanella livingstonensis str. LMG19866T NF22 prokMSA_id:75631 AF550588.1 Shewanella sp. Ko702 prokMSA_id:75869 AF550589.1 Shewanella sp. Ko704 prokMSA_id:79977 AF468269.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH4-100 prokMSA_id:80135 AF468258.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-30 prokMSA_id:80288 AF468231.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH2Br2-49 prokMSA_id:80425 AF468387.1 Arctic sea ice ARK10035 prokMSA_id:80569 AF468298.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-82 prokMSA_id:81492 AY167276.1 Shewanella sp. str. ANT9071 prokMSA_id:84722 AF539788.1 marine isolate str. RE1-1 prokMSA_id:85371 AF539785.1 marine isolate str. RE2-10 prokMSA_id:86253 AF539787.1 marine isolate str. E1 prokMSA_id:86623 AJ440976.1 lake microbial mat isolate str. R-12605 prokMSA_id:87848 AJ563805.1 Shewanella sp. str. GA-22 prokMSA_id:89905 AY321590.1 Shewanella putrefaciens str. CCUG36599 prokMSA_id:93758 AB111109.1 Shewanella sp. str. WW001 prokMSA_id:101047 AJ609571.1 Shewanella decolorationis str. CCTCC M 203093 S12 prokMSA_id:101440 AACY01101508.1 Sargasso Sea prokMSA_id:101546 AY690713.1 Shewanella sp. str. MK03 prokMSA_id:101975 AACY01037343.1 Sargasso Sea prokMSA_id:106113 AY660887.1 Shewanella sp. str. HAR-4 prokMSA_id:106911 AACY01068955.1 Sargasso Sea prokMSA_id:107626 AY582929.1 Shewanella sp. str. D7 prokMSA_id:108360 AY781192.1 Shewanella sp. str. A609 prokMSA_id:112311 AJ877256.1 Shewanella arctica str. 40-3 prokMSA_id:112864 AB205566.1 Shewanella putrefaciens str. P010 prokMSA_id:113045 AB205580.1 Shewanella baltica str. X1410 prokMSA_id:113468 AY902201.1 Shewanella sp. str. B21 prokMSA_id:113567 AB205572.1 Shewanella putrefaciens str. T214 prokMSA_id:113585 AB205575.1 Shewanella putrefaciens str. U1414 prokMSA_id:113604 AB205571.1 Shewanella putrefaciens str. T147 prokMSA_id:113693 AB205576.1 Shewanella putrefaciens str. U1417 prokMSA_id:113752 AB205574.1 Shewanella putrefaciens str. U718 prokMSA_id:114135 AB205573.1 Shewanella putrefaciens str. T212 prokMSA_id:114304 AB205578.1 Shewanella baltica str. W145 2.43.5.4.3.1.9081 OTU 1 seq prokMSA_id:43120 AB059264.1 Shewanella sp. str. MTW-1 2.43.5.4.4 Unclassified 10 seqs 2.43.5.4.4.1 sf_1 10 seqs 2.43.5.4.4.1.8483 OTU 3 seqs prokMSA_id:8823 AJ002006.1 Rheinheimera baltica str. OS140 Baltic # 166 prokMSA_id:73653 AJ441082.1 Rheinheimera baltica str. OSBAC5 prokMSA_id:83055 AY241547.1 aggregates water column German Wadden Sea part North Sea isolate str. HP1 HP1 2.43.5.4.4.1.9540 OTU 1 seq prokMSA_id:71026 AY028398.1 Teredinibacter turnerae str. T7902 2.43.5.4.4.1.9542 OTU 6 seqs prokMSA_id:8825 AB010842.1 isolate str. HTB082 prokMSA_id:21087 AF371859.1 phylotype OTU-2 swine intestine clone p-261-o5 prokMSA_id:24038 AF371858.1 phylotype OTU-2 swine intestine clone p-502-o2 prokMSA_id:27315 AF290480.1 cf. Alishewanella fetalis clone Llangefni 75 mite prokMSA_id:33192 AF144407.1 Alishewanella fetalis str. CCUG 30811 prokMSA_id:107589 AY549549.1 symbiont 2.43.5.5 aquatic clone group 4 seqs 2.43.5.5.1 Unclassified 4 seqs 2.43.5.5.1.1 sf_1 4 seqs 2.43.5.5.1.1.8229 OTU 1 seq prokMSA_id:7634 AB013829.1 Pseudomonas sp. 46.m 2.43.5.5.1.1.8839 OTU 1 seq prokMSA_id:32189 AJ400349.1 f cytometric sorted marine sample subpopulation 3 clone ZD0408 bacterium 2.43.5.5.1.1.8957 OTU 1 seq prokMSA_id:45930 AF354614.1 marine clone Arctic97C-5 2.43.5.5.1.1.9246 OTU 1 seq prokMSA_id:83068 AY221036.1 Mammoth Cave sediment clone CCD24 2.43.5.6 Cardiobacteriales 7 seqs 2.43.5.6.1 Cardiobacteriaceae 7 seqs 2.43.5.6.1.1 sf_1 7 seqs 2.43.5.6.1.1.8536 OTU 2 seqs prokMSA_id:7763 M35014.1 Cardiobacterium hominis prokMSA_id:7766 AF144697.1 Cardiobacterium sp. str. AB 2167 2.43.5.6.1.1.8721 OTU 1 seq prokMSA_id:7764 U87826.1 aortic heart valve patient with endocarditis clone v1 2.43.5.6.1.1.8765 OTU 1 seq prokMSA_id:7765 AF144696.1 Cardiobacterium sp. B str. AB 2168 2.43.5.6.1.1.8857 OTU 2 seqs prokMSA_id:7768 X54267.1 Dichelobacter nodosus prokMSA_id:7769 M35016.1 Dichelobacter nodosus 2.43.5.6.1.1.9453 OTU 1 seq prokMSA_id:65940 AF506987.1 Cardiobacterium valvarum str. MDA3079 2.43.5.7 Chromatiales 133 seqs 2.43.5.7.1 Chromatiaceae 74 seqs 2.43.5.7.1.1 sf_1 74 seqs 2.43.5.7.1.1.8273 OTU 1 seq prokMSA_id:71945 AJ010125.1 Thioflavicoccus mobilis str. 8320 2.43.5.7.1.1.8346 OTU 1 seq prokMSA_id:7539 X84316.1 Rhabdochromatium marinum 2.43.5.7.1.1.8376 OTU 2 seqs prokMSA_id:62475 AF513943.2 Chromatiaceae clone LA7-B30N prokMSA_id:62498 AF513942.1 Chromatiaceae clone LA4-B63N 2.43.5.7.1.1.8399 OTU 1 seq prokMSA_id:7542 AF154086.1 hydrocarbon seep clone BPC022 2.43.5.7.1.1.8400 OTU 3 seqs prokMSA_id:7544 AJ006059.1 Phototrophic clone 335 prokMSA_id:7545 AJ006061.1 Phototrophic clone 371 prokMSA_id:73594 AJ511274.1 Chromatiaceae Cad16 2.43.5.7.1.1.8407 OTU 1 seq prokMSA_id:77717 AJ298748.1 Nitrosococcus halophilus 2.43.5.7.1.1.8408 OTU 1 seq prokMSA_id:7573 Y12368.1 Thiorhodovibrio winogradskyi 2.43.5.7.1.1.8449 OTU 1 seq prokMSA_id:7550 U24110.1 Gamma-proteobacterial endosymbiont 2.43.5.7.1.1.8451 OTU 1 seq prokMSA_id:7553 AF104472.1 Olavius loisae endosymbiont 1 2.43.5.7.1.1.8455 OTU 1 seq prokMSA_id:7554 X93472.1 Phototrophic (BN 3201) isolate str. BN 3201 2.43.5.7.1.1.8456 OTU 1 seq prokMSA_id:7557 X98597.1 Halochromatium salexigens str. 6310 (DSM4395) 2.43.5.7.1.1.8461 OTU 1 seq prokMSA_id:7559 X78718.1 isolate Thd2 2.43.5.7.1.1.8494 OTU 1 seq prokMSA_id:17355 AF424091.1 clone MERTZ_2CM_164 2.43.5.7.1.1.8499 OTU 1 seq prokMSA_id:7568 X93473.1 Phototrophic (BN 5210) isolate str. BN 5210 (DSM 203) 2.43.5.7.1.1.8524 OTU 7 seqs prokMSA_id:18602 AF363287.1 Nitrosococcus oceani prokMSA_id:56278 AF508992.1 Nitrosococcus oceani prokMSA_id:71252 AF508987.1 Nitrosococcus oceani str. AFC24P prokMSA_id:71278 AF508991.1 Nitrosococcus oceani str. SWC19 prokMSA_id:72817 AF508989.1 Nitrosococcus oceani prokMSA_id:73060 AF508990.1 Nitrosococcus oceani prokMSA_id:77857 AJ298727.1 Nitrosococcus oceani Nc1 2.43.5.7.1.1.8525 OTU 1 seq prokMSA_id:7571 AF142806.1 clone ACE-31 2.43.5.7.1.1.8526 OTU 1 seq prokMSA_id:7572 AJ006212.1 Lamprocystis purpurea str. ML1 2.43.5.7.1.1.8527 OTU 1 seq prokMSA_id:26490 AF424166.1 clone MERTZ_21CM_129 2.43.5.7.1.1.8546 OTU 1 seq prokMSA_id:74025 AJ242772.1 Thiocapsa litoralis 2.43.5.7.1.1.8583 OTU 3 seqs prokMSA_id:7520 AJ223234.1 Chromatium okenii str. DSM 169 prokMSA_id:7521 Y12376.1 Chromatium okenii prokMSA_id:7522 AJ006221.1 Phototrophic clone 359 2.43.5.7.1.1.8697 OTU 1 seq prokMSA_id:77961 AJ401211.1 Thiococcus sp. AT2204 2.43.5.7.1.1.8718 OTU 1 seq prokMSA_id:51207 AF287298.1 Nitrosococcus halophilus 2.43.5.7.1.1.8733 OTU 1 seq prokMSA_id:30959 AF328211.1 clone KS75 2.43.5.7.1.1.8736 OTU 1 seq prokMSA_id:7531 AJ006213.1 Thiocapsa roseopersicina str. ML2 2.43.5.7.1.1.8784 OTU 2 seqs prokMSA_id:7516 Y11317.1 N. Pfennig 2611 prokMSA_id:7517 D50655.1 Thiocystis gelatinosa 2.43.5.7.1.1.8837 OTU 7 seqs prokMSA_id:7530 AJ006062.1 Thiocapsa rosea str. DSM 235 prokMSA_id:7532 AF112998.1 Thiocapsa roseopersicina str. 5811 prokMSA_id:7533 AF112999.1 Thiocapsa roseopersicina str. M11 prokMSA_id:7534 AF113000.1 Thiocapsa roseopersicina str. 1711 prokMSA_id:7540 AJ006214.1 DSM6702(T) prokMSA_id:7570 AB016986.1 Thiorhodovibrio winogradskyi str. MBIC2776T prokMSA_id:77763 AJ401213.1 Thiococcus sp. AT2206 2.43.5.7.1.1.8882 OTU 1 seq prokMSA_id:74812 AF235130.1 North Sea; NOR4 isolate str. KT0813 2.43.5.7.1.1.9033 OTU 5 seqs prokMSA_id:7541 AJ006063.1 Lamprocystis roseopersicina str. DSM 229 prokMSA_id:7543 AJ006057.1 Phototrophic clone 136 prokMSA_id:7564 AJ223235.1 Lamprocystis purpurea str. DSM 4197 prokMSA_id:7565 AJ006058.1 Phototrophic clone 261 prokMSA_id:7566 AJ006060.1 Phototrophic clone 345 2.43.5.7.1.1.9048 OTU 1 seq prokMSA_id:78198 AJ401209.1 Allochromatium sp. AT2202 2.43.5.7.1.1.9052 OTU 1 seq prokMSA_id:78110 AY171352.1 marine sediment clone s18 2.43.5.7.1.1.9054 OTU 1 seq prokMSA_id:78112 AJ401212.1 Thiococcus sp. AT2205 2.43.5.7.1.1.9077 OTU 1 seq prokMSA_id:7518 AJ224438.1 Thiocystis violascens str. DSM 168T 2.43.5.7.1.1.9078 OTU 1 seq prokMSA_id:7519 Y12372.1 Thiocystis minor str. DSM 178 2.43.5.7.1.1.9097 OTU 1 seq prokMSA_id:43810 AF328856.1 Olavius algarvensis sulfur-oxidizing endosymbiont sulfur-oxidizing 2.43.5.7.1.1.9138 OTU 1 seq prokMSA_id:7523 Y11315.1 N. Pfennig 2711 2.43.5.7.1.1.9164 OTU 1 seq prokMSA_id:7525 AF142930.1 clone PENDANT-18 2.43.5.7.1.1.9170 OTU 1 seq prokMSA_id:7526 Y11316.1 Thiorhodococcus minor str. CE2203 2.43.5.7.1.1.9217 OTU 1 seq prokMSA_id:70247 AJ010124.1 Thiorhodovibrio winogradskyi str. 4910/06511 2.43.5.7.1.1.9251 OTU 3 seqs prokMSA_id:7470 AJ010297.2 Thiorhodovibrio sibirica prokMSA_id:7548 AJ006530.2 Thiorhodospira sibirica A12 prokMSA_id:71426 AJ277022.1 Thiococcus sp. str. A31 2.43.5.7.1.1.9356 OTU 1 seq prokMSA_id:34480 AB022611.1 SA50 clone 2.43.5.7.1.1.9370 OTU 3 seqs prokMSA_id:8827 AB010859.1 isolate str. HTB021 prokMSA_id:8828 AB010860.1 isolate str. HTB019 prokMSA_id:55811 AY093457.1 deep marine sediment clone MB-A2-102 2.43.5.7.1.1.9545 OTU 2 seqs prokMSA_id:47560 AF424112.1 clone MERTZ_2CM_261 prokMSA_id:59789 AY133401.1 coastal Antarctic sediment clone BB2_140 2.43.5.7.1.1.9571 OTU 2 seqs prokMSA_id:7502 M96395.1 Nitrosococcus oceanus prokMSA_id:78358 AJ298726.1 Nitrosococcus oceani Nc10 2.43.5.7.1.1.9595 OTU 1 seq prokMSA_id:42746 AF211277.1 brackish water black mud clone MT58 2.43.5.7.1.1.9610 OTU 2 seqs prokMSA_id:20680 AF384210.1 Chromatium sp. str. RW prokMSA_id:22729 AF384208.1 Chromatium sp. str. NM2 2.43.5.7.2 Ectothiorhodospiraceae 41 seqs 2.43.5.7.2.1 sf_11 1 seq 2.43.5.7.2.1.8306 OTU 1 seq prokMSA_id:62495 AF513947.1 Ectothiorhodospiraceae clone LA7-B9 2.43.5.7.2.2 sf_1 40 seqs 2.43.5.7.2.2.8179 OTU 1 seq prokMSA_id:39317 AF194195.1 clone n7d 2.43.5.7.2.2.8258 OTU 4 seqs prokMSA_id:7464 X93475.1 Phototrophic (BN 9902) isolate str. BN 9902 prokMSA_id:7465 AF084511.1 Ectothiorhodospira sp. 'Bogoria Red' str. Bogoria Red 'Bogoria prokMSA_id:28189 AF384207.1 Ectothiorhodospira sp. 'Bogoria Red' str. RB1 'Bogoria prokMSA_id:32582 AF384206.1 Ectothiorhodospira sp. 'Bogoria Red' str. RM1 'Bogoria 2.43.5.7.2.2.8293 OTU 1 seq prokMSA_id:37274 AF170421.1 shal water hydrothermal vent isolate str. OBII5 OBII5 2.43.5.7.2.2.8512 OTU 1 seq prokMSA_id:37006 AF223298.1 marine sediment clone B2M54 2.43.5.7.2.2.8588 OTU 1 seq prokMSA_id:43149 AB022626.1 SB21 clone 2.43.5.7.2.2.8789 OTU 1 seq prokMSA_id:32932 AB077344.1 deep-sea sediment clone TYM--7 2.43.5.7.2.2.8791 OTU 1 seq prokMSA_id:51730 AF424125.1 clone MERTZ_2CM_304 2.43.5.7.2.2.8792 OTU 1 seq prokMSA_id:23032 AF348707.1 clone MPD-09 2.43.5.7.2.2.8818 OTU 1 seq prokMSA_id:25726 AF424083.1 clone MERTZ_2CM_114 2.43.5.7.2.2.8829 OTU 1 seq prokMSA_id:43949 AF424158.1 clone MERTZ_0CM_387 2.43.5.7.2.2.8871 OTU 2 seqs prokMSA_id:25823 AF328198.1 clone KS59 prokMSA_id:36493 AF328209.1 clone KS72 2.43.5.7.2.2.8917 OTU 2 seqs prokMSA_id:49121 AF424069.1 clone MERTZ_2CM_54 prokMSA_id:54801 AF424060.1 clone MERTZ_2CM_24 2.43.5.7.2.2.9018 OTU 1 seq prokMSA_id:48991 AF424118.1 clone MERTZ_2CM_279 2.43.5.7.2.2.9120 OTU 1 seq prokMSA_id:17560 AF328223.1 clone KS90 2.43.5.7.2.2.9155 OTU 1 seq prokMSA_id:27330 AF424081.1 clone MERTZ_2CM_110 2.43.5.7.2.2.9187 OTU 1 seq prokMSA_id:52794 AF424139.1 clone MERTZ_0CM_113 2.43.5.7.2.2.9229 OTU 1 seq prokMSA_id:18424 AY034139.1 Thiobacillus prosperus str. DSM 5130 2.43.5.7.2.2.9278 OTU 1 seq prokMSA_id:41685 AF424113.1 clone MERTZ_2CM_265 2.43.5.7.2.2.9371 OTU 1 seq prokMSA_id:7452 X93483.1 Phototrophic (BN 9851) isolate str. BN 9851 2.43.5.7.2.2.9373 OTU 1 seq prokMSA_id:7453 AF170783.1 clone QSSC9L-5 2.43.5.7.2.2.9375 OTU 1 seq prokMSA_id:7457 X93474.1 Phototrophic (BN 9624) isolate str. BN 9624 2.43.5.7.2.2.9378 OTU 1 seq prokMSA_id:7459 AF142886.1 clone EKHO-2 2.43.5.7.2.2.9387 OTU 1 seq prokMSA_id:7616 AJ240991.1 Norway:(Svalbard)Hornsund clone Sva1046 2.43.5.7.2.2.9427 OTU 1 seq prokMSA_id:7460 L35510.1 Nitrococcus mobilis 2.43.5.7.2.2.9429 OTU 1 seq prokMSA_id:7461 AF114783.1 Alkalispirillum mobile 2.43.5.7.2.2.9450 OTU 2 seqs prokMSA_id:62637 AJ318525.1 Halorhodospira neutrophila str. SG 3301 prokMSA_id:62638 AJ318526.1 Halorhodospira neutrophila str. SG 3304 2.43.5.7.2.2.9451 OTU 1 seq prokMSA_id:7467 X93480.1 Phototrophic (DSM 239) isolate str. DSM 239 2.43.5.7.2.2.9455 OTU 1 seq prokMSA_id:7468 X93478.1 Phototrophic (DSM 2111) isolate str. DSM 2111 2.43.5.7.2.2.9480 OTU 1 seq prokMSA_id:7471 X93476.1 Phototrophic (DSM 241) isolate str. DSM 241 2.43.5.7.2.2.9577 OTU 1 seq prokMSA_id:24814 AF223300.1 clone B2M61 2.43.5.7.2.2.9598 OTU 4 seqs prokMSA_id:62740 AF507818.1 Mono Lake at depth 2 m station 6 July 2000 clone ML602J-47 proteobacterium prokMSA_id:63857 AF452602.1 hypersaline Mono Lake clone ML110J-38 prokMSA_id:79794 AF453545.1 hypersaline Mono Lake clone ML812M-2 prokMSA_id:80413 AF453540.1 hypersaline Mono Lake clone ML615J-15 2.43.5.7.3 Halothiobacillaceae 9 seqs 2.43.5.7.3.1 sf_1 8 seqs 2.43.5.7.3.1.8884 OTU 1 seq prokMSA_id:66337 AY099401.1 Halothiobacillus sp. str. RA13 2.43.5.7.3.1.9153 OTU 1 seq prokMSA_id:19288 AF170419.1 Halothiobacillus kellyi 2.43.5.7.3.1.9181 OTU 1 seq prokMSA_id:44985 AF173169.1 Halothiobacillus neapolitanus str. DSM 581 2.43.5.7.3.1.9306 OTU 3 seqs prokMSA_id:7758 M90662.1 Thiobacillus hydrothermalis prokMSA_id:19960 AF226850.1 Thiobacillus sp. MS02 prokMSA_id:76987 AJ294337.1 Halothiobacillus hydrothermalis HY-66 2.43.5.7.3.1.9441 OTU 2 seqs prokMSA_id:7761 U58020.1 Halothiobacillus halophilus prokMSA_id:62497 AF513944.1 Chromatiaceae clone LAS-B37N 2.43.5.7.3.2 sf_3 1 seq 2.43.5.7.3.2.9448 OTU 1 seq prokMSA_id:66599 AY096035.1 Halothiobacillus sp. str. WJ18 2.43.5.7.4 Unclassified 9 seqs 2.43.5.7.4.1 sf_1 9 seqs 2.43.5.7.4.1.8447 OTU 1 seq prokMSA_id:41625 AB022641.1 SA28 clone 2.43.5.7.4.1.8651 OTU 1 seq prokMSA_id:18389 AF424134.1 clone MERTZ_0CM_58 2.43.5.7.4.1.8960 OTU 1 seq prokMSA_id:41892 AF424070.1 clone MERTZ_2CM_55 2.43.5.7.4.1.8984 OTU 1 seq prokMSA_id:22774 AF424138.1 clone MERTZ_0CM_102 2.43.5.7.4.1.9086 OTU 1 seq prokMSA_id:7580 L07864.1 Solemya reidi gill symbiont 2.43.5.7.4.1.9282 OTU 1 seq prokMSA_id:57798 AY098903.1 clone SBRC_30 2.43.5.7.4.1.9316 OTU 1 seq prokMSA_id:34593 AF440720.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-45 2.43.5.7.4.1.9338 OTU 1 seq prokMSA_id:23199 AF424122.1 clone MERTZ_2CM_300 2.43.5.7.4.1.9583 OTU 1 seq prokMSA_id:44804 AB077345.1 deep-sea sediment clone TYM--8 2.43.5.8 Ellin307/WD2124 25 seqs 2.43.5.8.1 Unclassified 25 seqs 2.43.5.8.1.1 sf_1 25 seqs 2.43.5.8.1.1.8423 OTU 6 seqs prokMSA_id:25316 AJ292680.1 prokMSA_id:46141 AJ233555.1 RT- prokMSA_id:47916 AJ292673.1 PCB-polluted soil clone WD260 prokMSA_id:61519 AY043699.1 forest cut-block surface organic matter British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) Installation near Williams Lake BC Canada clone NOS7.145WL prokMSA_id:76527 AF431379.1 lodgepole pine rhizosphere soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Prince George BC Canada clone C47.11PG prokMSA_id:76553 AF432807.1 lodgepole pine rhizosphere soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Smithers BC Canada clone N29.17SM 2.43.5.8.1.1.8532 OTU 1 seq prokMSA_id:76705 AJ534626.1 uranium mining waste pile clone JG36-TzT-191 2.43.5.8.1.1.8823 OTU 2 seqs prokMSA_id:84768 AY221039.1 Mammoth Cave clone CCD9 prokMSA_id:85458 AY221082.1 Mammoth Cave clone CCU5 2.43.5.8.1.1.9374 OTU 15 seqs prokMSA_id:20938 AF465652.1 thermal soil clone YNPRH65B prokMSA_id:25123 AF465671.1 DGGE band YNPRH-B13 clone prokMSA_id:58104 AF498721.1 soil isolate Ellin339 prokMSA_id:63327 AF523889.1 coal effluent wetland clone RCP1-57 prokMSA_id:64005 AB087369.1 CF-soil clone CF49 prokMSA_id:73838 AF498689.1 soil isolate Ellin307 prokMSA_id:99240 AF409023.1 isolate str. Ellin181 prokMSA_id:100307 AY395402.1 pasture soil clone EB1083 prokMSA_id:103665 AF408981.1 isolate str. Ellin139 prokMSA_id:106566 AY395360.1 pasture soil clone EB1041 prokMSA_id:111642 AY234495.1 soil isolate Ellin5078 prokMSA_id:111693 AY234531.1 soil isolate Ellin5114 prokMSA_id:112168 AY234615.1 soil isolate Ellin5264 prokMSA_id:112389 AY234631.1 soil isolate Ellin5280 prokMSA_id:113840 AY913293.1 forest soil clone DUNssu070 2.43.5.8.1.1.9458 OTU 1 seq prokMSA_id:75633 AJ518786.1 uranium mining waste pile clone JG37-AG-94 proteobacterium 2.43.5.9 Enterobacteriales 1021 seqs 2.43.5.9.1 Enterobacteriaceae 951 seqs 2.43.5.9.1.1 sf_1 936 seqs 2.43.5.9.1.1.1206 OTU 2 seqs prokMSA_id:19440 AF333521.1 actinobacterium clone R18 prokMSA_id:85254 AY265343.1 Dermacentor variabilis symbiont 2.43.5.9.1.1.8165 OTU 1 seq prokMSA_id:10211 U20278.1 OR 2.43.5.9.1.1.8173 OTU 5 seqs prokMSA_id:10217 Z76740.1 Photorhabdus luminescens str. Tn-5*2 prokMSA_id:10225 Z76752.1 Photorhabdus asymbiotica str. ATCC 43949 prokMSA_id:10226 Z76753.1 Photorhabdus asymbiotica str. ATCC 43952 prokMSA_id:10227 Z76754.1 Photorhabdus asymbiotica prokMSA_id:10228 Z76755.1 Photorhabdus asymbiotica str. ATCC 43950 2.43.5.9.1.1.8182 OTU 19 seqs prokMSA_id:10205 X07652.1 Proteus vulgaris prokMSA_id:10206 AJ233425.1 Proteus vulgaris str. DSM 30118 prokMSA_id:18414 AJ301683.1 Proteus vulgaris str. CIP103181T (ATCC29906T) prokMSA_id:19524 AJ301682.1 Proteus mirabilis str. CIP103181T (ATCC29906T) prokMSA_id:19687 AB079370.1 Proteus mirabilis str. U1-2 prokMSA_id:27167 AF008582.1 Proteus mirabilis prokMSA_id:37204 J01874.1 Proteus vulgaris prokMSA_id:75554 AY167943.1 manure prokMSA_id:75572 AY167938.1 manure prokMSA_id:75783 AY167934.1 manure prokMSA_id:76116 AY167940.1 manure prokMSA_id:76139 AY167935.1 manure prokMSA_id:76398 AY167953.1 manure prokMSA_id:76558 AY167936.1 manure prokMSA_id:76689 AY167951.1 manure prokMSA_id:76776 AY167942.1 manure prokMSA_id:76918 AY167947.1 manure prokMSA_id:77224 AY167939.1 manure prokMSA_id:105166 AJ634474.1 Proteus penneri str. ENT229 2.43.5.9.1.1.8191 OTU 1 seq prokMSA_id:23181 AJ296747.1 Buchnera aphidicola (Pterocomma populeum) 2.43.5.9.1.1.8207 OTU 1 seq prokMSA_id:9948 L37343.1 Wigglesworthia glossinidia endosymbiont Glossina palpalis 2.43.5.9.1.1.8217 OTU 1 seq prokMSA_id:21132 AF286129.1 Aleurodicus dugesii 2.43.5.9.1.1.8225 OTU 2 seqs prokMSA_id:84257 AY136158.1 Pemphigus populi symbiont prokMSA_id:84718 AY136160.1 Tetraneura ulmi symbiont 2.43.5.9.1.1.8236 OTU 1 seq prokMSA_id:63934 AF476110.1 Vryburgia amaryllidis symbiont 2.43.5.9.1.1.8244 OTU 2 seqs prokMSA_id:9727 AF024608.1 Pantoea agglomerans str. TAC.III.94.1 prokMSA_id:9728 AF024609.1 directly amplified total digested amplification date September 1993 clone thrips6.12 gut 2.43.5.9.1.1.8251 OTU 1 seq prokMSA_id:24848 AF214640.1 Nitrogen-fixing isolate str. CANF3 2.43.5.9.1.1.8282 OTU 1 seq prokMSA_id:63942 AF476101.1 Antonina pretiosa symbiont 2.43.5.9.1.1.8283 OTU 1 seq prokMSA_id:54964 AF263562.1 Heteropsylla texana symbiont 2.43.5.9.1.1.8286 OTU 1 seq prokMSA_id:63944 AF476102.1 Cyphonococcus alpinus symbiont 2.43.5.9.1.1.8300 OTU 1 seq prokMSA_id:10299 D78006.1 Xenorhabdus beddingii str. DSM4764 2.43.5.9.1.1.8302 OTU 1 seq prokMSA_id:27032 AF332546.1 Enterobacter sp. B96 2.43.5.9.1.1.8305 OTU 1 seq prokMSA_id:9789 AJ223409.1 Pectobacterium cacticida 2.43.5.9.1.1.8313 OTU 1 seq prokMSA_id:66727 AF373199.1 Erwinia chrysanthemi str. 571 2.43.5.9.1.1.8319 OTU 1 seq prokMSA_id:9796 AJ233421.1 Leminorella grimontii str. DSM 5078 2.43.5.9.1.1.8326 OTU 1 seq prokMSA_id:10024 AB031644.1 clone TIHP368-27 2.43.5.9.1.1.8343 OTU 1 seq prokMSA_id:85178 AY196851.1 Candidatus Blochmannia festinatus Cfest14 2.43.5.9.1.1.8350 OTU 1 seq prokMSA_id:9794 U80198.1 Pectobacterium subsp. vasculorum str. ATCC 43762 2.43.5.9.1.1.8352 OTU 1 seq prokMSA_id:36645 AJ296753.1 Buchnera aphidicola (Stomaphis quercus) 2.43.5.9.1.1.8362 OTU 10 seqs prokMSA_id:10139 AF010251.1 Klebsiella granulomatis str. KH 22 d peripheral blood monocytes prokMSA_id:10155 AF076033.1 Klebsiella pneumoniae prokMSA_id:10159 AF009170.1 Klebsiella pneumoniae subsp. ozaenae str. I436 prokMSA_id:44635 AF453251.1 Klebsiella pneumoniae str. ASR1 prokMSA_id:71955 AF228918.1 Klebsiella subsp. pneumoniae str. ATCC13886 prokMSA_id:73579 AF250285.1 Klebsiella singaporensis str. LX3 prokMSA_id:86686 AY217656.1 Klebsiella milletis str. pC4 prokMSA_id:87560 AY291290.1 Klebsiella pneumoniae str. 542 prokMSA_id:89119 AY292865.1 Klebsiella pneumoniae 521 prokMSA_id:89511 AY292866.1 Klebsiella pneumoniae 1053 2.43.5.9.1.1.8379 OTU 2 seqs prokMSA_id:20321 AF289542.1 Erwinia amylovora EA G-5 prokMSA_id:26973 AF290417.1 Pantoea agglomerans Eh1 2.43.5.9.1.1.8384 OTU 1 seq prokMSA_id:9642 M63250.1 Buchnera aphidicola 2.43.5.9.1.1.8387 OTU 1 seq prokMSA_id:33113 AJ296757.1 Buchnera aphidicola (Thelaxes suberi) 2.43.5.9.1.1.8388 OTU 8 seqs prokMSA_id:10162 M27040.1 symbiont S of Acyrthosiphon pisum prokMSA_id:26800 AB033778.1 Acyrthosiphon pisum strain IS symbiont prokMSA_id:27697 AB033779.1 Acyrthosiphon pisum strain MR88 symbiont prokMSA_id:31810 AF293617.1 Secondary symbiont type-R Acyrthosiphon pisum (rrs) clone TUCSON type-R prokMSA_id:33363 AB033777.1 Acyrthosiphon pisum strain TKC93 symbiont prokMSA_id:37966 AF293624.1 Uroleucon caligatum symbiont prokMSA_id:82660 AY136139.1 Secondary symbiont type-R Acyrthosiphon pisum clone Wisconsin type-R prokMSA_id:108261 AY296732.1 Acyrthosiphon pisum symbiont 2.43.5.9.1.1.8393 OTU 1 seq prokMSA_id:9949 L37342.1 Wigglesworthia glossinidia endosymbiont Glossina tachinoides 2.43.5.9.1.1.8395 OTU 1 seq prokMSA_id:9645 M63251.1 Buchnera aphidicola 2.43.5.9.1.1.8396 OTU 1 seq prokMSA_id:9646 M63249.1 Buchnera aphidicola 2.43.5.9.1.1.8398 OTU 1 seq prokMSA_id:9951 L37339.1 Wigglesworthia glossinidia endosymbiont Glossina morsitans 2.43.5.9.1.1.8421 OTU 7 seqs prokMSA_id:9638 M63246.1 Buchnera aphidicola prokMSA_id:9639 L18927.1 Buchnera aphidicola prokMSA_id:9640 M63247.1 Buchnera aphidicola prokMSA_id:9641 M63248.1 Buchnera aphidicola prokMSA_id:64248 NC_004061.1 Buchnera aphidicola str. Sg (Schizaphis graminum) prokMSA_id:64367 AE014100.1 Buchnera aphidicola str. Sg prokMSA_id:105511 AY518294.1 Buchnera aphidicola (Aphis fabae fabae) 2.43.5.9.1.1.8437 OTU 12 seqs prokMSA_id:9737 AF015259.1 Edwardsiella tarda str. CDC 4411-68 prokMSA_id:10187 AF053975.1 Edwardsiella tarda prokMSA_id:22744 AB050830.1 Edwardsiella tarda str. NE8003 prokMSA_id:25008 AF310622.1 Edwardsiella ictaluri prokMSA_id:28203 AB050829.1 Edwardsiella tarda str. Su100 prokMSA_id:33398 AB050831.1 Edwardsiella tarda str. E381 prokMSA_id:34178 AB050826.1 Edwardsiella ictaluri prokMSA_id:40779 AB050825.1 Edwardsiella hoshinae str. JCM1679 prokMSA_id:70016 AB050833.1 Edwardsiella sp. str. AC8640 prokMSA_id:74453 AB050832.1 Edwardsiella tarda str. NB8031 prokMSA_id:98985 AY461379.1 Edwardsiella tarda str. CW-7 prokMSA_id:108358 AY775313.1 Edwardsiella tarda str. HC010907-1 2.43.5.9.1.1.8450 OTU 1 seq prokMSA_id:40697 AY043168.1 Morganella morganii 2.43.5.9.1.1.8458 OTU 1 seq prokMSA_id:50183 AJ296755.1 Buchnera aphidicola (Maculolachnus submacula) (Maculolachnus 2.43.5.9.1.1.8464 OTU 1 seq prokMSA_id:54656 AF263559.1 Cacopsylla myrthi symbiont 2.43.5.9.1.1.8467 OTU 7 seqs prokMSA_id:10035 AF124038.1 Serratia marcescens prokMSA_id:10037 AF124042.1 Serratia marcescens prokMSA_id:31283 AJ297950.1 Serratia marcescens HO2- prokMSA_id:41097 AF286874.1 Serratia marcescens str. IRBG 501 prokMSA_id:42000 AB061685.1 Serratia marcescens subsp. sakuensis str. KRED subsp. prokMSA_id:59692 AB091837.2 Pseudomonas fluorescens kpm-078r prokMSA_id:63599 AY043386.1 Serratia marcescens str. AU736 2.43.5.9.1.1.8468 OTU 1 seq prokMSA_id:9643 Y11972.1 Buchnera aphidicola 2.43.5.9.1.1.8473 OTU 12 seqs prokMSA_id:10302 M59155.1 Hafnia alvei prokMSA_id:10310 U88434.1 Rahnella sp. 'CDC 1-576' str. CDC 1-576 prokMSA_id:10311 U88435.1 Rahnella sp. 'CDC 21234' str. CDC 21234 prokMSA_id:10312 U88437.1 Rahnella sp. 'CDC 658-79' str. CDC 658-79 prokMSA_id:10313 U88438.1 Rahnella sp. 'CDC Bonn7' str. CDC Bonn7 prokMSA_id:10314 U88439.1 Rahnella sp. 'CDC 2383' str. CDC Italy 2383 'CDC prokMSA_id:10316 AB004762.1 symbiont prokMSA_id:70669 AJ487023.1 intestine Zophobas mori clone prokMSA_id:84587 AY253923.1 Hafnia alvei m 49 prokMSA_id:85035 AY253921.1 Rahnella aquatilis m 46 prokMSA_id:86541 AY253922.1 Hafnia alvei k 43 prokMSA_id:104231 AY572428.1 Hafnia alvei str. 718 2.43.5.9.1.1.8478 OTU 1 seq prokMSA_id:48707 AJ245596.1 Saint Kitts and Nevis clone 12/1 2.43.5.9.1.1.8490 OTU 1 seq prokMSA_id:9977 AJ011333.1 Yersinia sp. KM16 2.43.5.9.1.1.8504 OTU 2 seqs prokMSA_id:63940 AF476103.1 Dysmicoccus brevipes symbiont prokMSA_id:63945 AF476104.1 Dysmicoccus neobrevipes symbiont 2.43.5.9.1.1.8505 OTU 14 seqs prokMSA_id:10050 AJ233400.1 Buttiauxella agrestis str. DSM 4586 prokMSA_id:10051 AJ233401.1 Buttiauxella brennerae str. DSM 9396 prokMSA_id:10052 AJ233402.1 Buttiauxella ferragutiae str. DSM 9390 prokMSA_id:10053 AJ233403.1 Buttiauxella gaviniae str. DSM 9393 prokMSA_id:10054 AJ233404.1 Buttiauxella izardii str. DSM 9397 prokMSA_id:10055 AJ233405.1 Buttiauxella noackiae str. DSM 9401 prokMSA_id:10056 AJ233406.1 Buttiauxella warmboldiae str. DSM 9404 prokMSA_id:45264 AF227832.1 Pantoea sp. str. 57917 prokMSA_id:69815 AJ293684.1 Buttiauxella agrestis str. S3/3-203 prokMSA_id:69978 AJ293687.1 Buttiauxella noackiae str. BR 626 prokMSA_id:70049 AJ293689.1 Buttiauxella noackiae str. NSW11T (ATCC 51607T) prokMSA_id:73164 AJ293685.1 Buttiauxella agrestis str. CDC 1176-81T (ATCC 33320T) prokMSA_id:73465 AF227860.1 Pantoea sp. str. 57916 prokMSA_id:74207 AJ293683.1 Buttiauxella sp. str. LBV 449 2.43.5.9.1.1.8506 OTU 1 seq prokMSA_id:9651 Z19056.1 Buchnera aphidicola 2.43.5.9.1.1.8510 OTU 11 seqs prokMSA_id:10142 Y17654.1 Klebsiella pneumoniae subsp. ozaenae str. ATCC11296T subsp. prokMSA_id:10148 Y17657.1 Klebsiella pneumoniae str. ATCC13884T prokMSA_id:10149 Y17668.1 Klebsiella pneumoniae str. Klebs313 prokMSA_id:10151 Y17656.1 Klebsiella pneumoniae str. ATCC13883T prokMSA_id:10153 AB004753.1 Klebsiella pneumoniae str. JCM1662 prokMSA_id:27939 AJ233420.1 Klebsiella pneumoniae prokMSA_id:29091 AF221603.1 Klebsiella sp. KG1 prokMSA_id:63980 AY114159.1 Klebsiella pneumoniae str. 402-2 prokMSA_id:71139 AF228919.1 Klebsiella pneumoniae subsp. ozaenae str. ATCC13885 subsp. prokMSA_id:72626 AF228920.1 Klebsiella pneumoniae str. NLEP98-0472 prokMSA_id:73274 AF511429.1 Klebsiella pneumoniae CCCO2 2.43.5.9.1.1.8528 OTU 7 seqs prokMSA_id:10077 Y17665.1 Enterobacter cloacae Nr. 3 prokMSA_id:34251 AF423262.1 soil clone 431-1 prokMSA_id:38852 AF423223.1 soil clone 1389-1 prokMSA_id:53373 AF423250.1 soil clone 336-1 prokMSA_id:56056 AY133084.1 TCE-contaminated site clone ccslm2118 prokMSA_id:70171 AF423283.1 soil clone 624-1 prokMSA_id:73497 AF423294.1 soil clone 816-1 2.43.5.9.1.1.8529 OTU 7 seqs prokMSA_id:10126 Y17659.1 Raoultella planticola str. ATCC33531T prokMSA_id:10127 X93215.1 Klebsiella planticola prokMSA_id:10128 Y17662.1 Raoultella ornithinolytica str. 590681 prokMSA_id:10132 AF175281.1 Klebsiella sp. str. Cd-1 prokMSA_id:49258 U78182.1 Raoultella ornithinolytica str. CIP 103 364 T prokMSA_id:73261 AF181574.1 Raoultella planticola 7 prokMSA_id:74012 AJ251467.1 Raoultella ornithinolytica str. JCM6096T 2.43.5.9.1.1.8530 OTU 1 seq prokMSA_id:72866 AJ489826.1 Enterobacteriaceae CF01Ent-1 2.43.5.9.1.1.8534 OTU 2 seqs prokMSA_id:9870 AF130967.1 Pantoea oleae str. A66 prokMSA_id:9871 AF130969.1 Pantoea oleae str. A36 2.43.5.9.1.1.8554 OTU 27 seqs prokMSA_id:9860 Y17655.1 Klebsiella oxytoca str. ATCC13182T prokMSA_id:10112 Y17664.1 Klebsiella sp. str. BEC441 prokMSA_id:10114 U81672.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinBB56 prokMSA_id:10134 AF047186.1 Kluyvera georgiana str. ATCC 51603 prokMSA_id:16953 AF176566.1 Kluyvera ascorbata str. CDC 0556/74 prokMSA_id:17402 U78183.1 Klebsiella oxytoca str. ATCC 13182T prokMSA_id:24844 AF176562.1 Kluyvera sp. IAL9555/98 str. IAL 9555/98 prokMSA_id:26295 U78184.1 Klebsiella oxytoca str. ODC+ clinical isolate prokMSA_id:35654 AF176563.1 Kluyvera sp. IAL9557/98 str. IAL 9557/98 prokMSA_id:44280 AF008579.1 Kluyvera ascorbata str. ATCC 33433T prokMSA_id:49488 AF310219.1 Kluyvera ascorbata str. ATCC33433 prokMSA_id:51193 AF176564.1 Kluyvera sp. IAL9558/98 str. IAL 9558/98 prokMSA_id:58286 AF543296.1 Klebsiella oxytoca str. ChDC OS46 prokMSA_id:65398 AF511435.1 Serratia fonticola CCCO11b prokMSA_id:66564 AJ487024.1 intestine Zophobas mori clone prokMSA_id:71543 AF176567.1 Kluyvera ascorbata str. CDC 2064/78 prokMSA_id:71835 AF176560.1 Kluyvera ascorbata str. CDC 0648/74 prokMSA_id:71892 AF176559.1 Kluyvera ascorbata str. CDC 1058/74 prokMSA_id:72250 AF176565.1 Kluyvera ascorbata str. CDC 2066/78 prokMSA_id:80910 AJ508301.1 Enterobacter kobei str. CIP 105566 prokMSA_id:94216 AY363386.2 Klebsiella sp. str. rennanqilfy18 prokMSA_id:100234 AB118219.1 Klebsiella sp. PAMU-1.2 prokMSA_id:105947 AJ627202.1 Kluyvera ascorbata 69 prokMSA_id:110337 AY873801.1 Klebsiella oxytoca GR6 prokMSA_id:112357 AJ251468.1 Enterobacter aerogenes str. NCTC10006T prokMSA_id:113218 AJ871857.1 ATCC 49131 prokMSA_id:113753 AJ871858.1 ATCC 13182 2.43.5.9.1.1.8558 OTU 3 seqs prokMSA_id:9798 U80200.1 Erwinia chrysanthemi prokMSA_id:9800 Z96093.1 Erwinia chrysanthemi str. LMG 2804 prokMSA_id:43232 AJ233412.1 Erwinia chrysanthemi str. DSM 4610 2.43.5.9.1.1.8564 OTU 8 seqs prokMSA_id:10331 X79936.1 Rahnella aquatilis str. 334 prokMSA_id:10333 U88436.1 Rahnella sp. 'CDC 2987-79' str. CDC 2987-79 'CDC prokMSA_id:10334 U90757.1 Rahnella aquatilis str. CDC 1327-79 prokMSA_id:10335 AJ233426.1 Rahnella aquatilis str. DSM 4594 prokMSA_id:10336 X79938.1 Rahnella aquatilis str. 339 prokMSA_id:10340 X79939.1 Rahnella aquatilis str. ATCC 33989 prokMSA_id:78192 AB087712.1 Rahnella aquatilis YL-1 prokMSA_id:110072 AY842148.1 Chinese Paris Rhizome's Endophyte isolate str. SS10 2.43.5.9.1.1.8567 OTU 1 seq prokMSA_id:44391 AF047175.1 Enterobacter cloacae str. TU-7A 2.43.5.9.1.1.8586 OTU 2 seqs prokMSA_id:33643 AF322016.1 Planococcus citri endosymbiont prokMSA_id:63935 AF476107.1 Planococcus citri symbiont 2.43.5.9.1.1.8590 OTU 1 seq prokMSA_id:9947 AJ010486.1 Enterobacter pyrinus str. KCTC2520 2.43.5.9.1.1.8599 OTU 2 seqs prokMSA_id:9998 U20274.1 CA prokMSA_id:10002 U20276.1 Bacterium of host D. paulistorum 2.43.5.9.1.1.8603 OTU 1 seq prokMSA_id:63938 AF476106.1 Melanococcus albizziae symbiont 2.43.5.9.1.1.8607 OTU 1 seq prokMSA_id:63939 AF476100.1 Amonostherium lichtensioides symbiont 2.43.5.9.1.1.8609 OTU 1 seq prokMSA_id:29373 AJ245593.1 Argentina clone 6-6 2.43.5.9.1.1.8611 OTU 1 seq prokMSA_id:9950 L37340.1 Wigglesworthia glossinidia endosymbiont Glossina austeni 2.43.5.9.1.1.8624 OTU 1 seq prokMSA_id:63941 AF476105.1 Erium globosum symbiont 2.43.5.9.1.1.8627 OTU 1 seq prokMSA_id:63943 AF476099.1 Australicoccus grevilleae symbiont 2.43.5.9.1.1.8629 OTU 1 seq prokMSA_id:9846 AB018592.1 Selenate-reducing isolate str. JSA 2.43.5.9.1.1.8630 OTU 3 seqs prokMSA_id:10186 AB004751.1 Serratia rubidaea str. JCM1240 prokMSA_id:10189 AJ233436.1 Serratia rubidaea str. DSM 4480 prokMSA_id:10192 AB030922.1 Serratia rubidaea str. IEGN11 2.43.5.9.1.1.8631 OTU 1 seq prokMSA_id:63937 AF476108.1 Planococcus ficus symbiont 2.43.5.9.1.1.8632 OTU 1 seq prokMSA_id:9847 AB018593.1 Selenate-reducing isolate str. TSA 2.43.5.9.1.1.8637 OTU 1 seq prokMSA_id:9802 Z96096.1 Brenneria paradisiaca str. LMG 2542 2.43.5.9.1.1.8640 OTU 163 seqs prokMSA_id:9667 U90318.1 Salmonella enteritidis prokMSA_id:9708 U90317.1 Salmonella subsp. enterica serovar Weltevreden str. sw1 prokMSA_id:9753 X80676.1 Salmonella sp. prokMSA_id:9769 X80681.1 Salmonella typhimurium prokMSA_id:9772 AF130955.1 Salmonella sp prokMSA_id:9781 X80677.1 "Salmonella sofia" prokMSA_id:9842 AF025367.1 Citrobacter gillenii str. CDC 4693-86 prokMSA_id:9843 AF025369.1 Citrobacter murliniae str. CDC 2970-59 prokMSA_id:9852 AF025373.1 Citrobacter werkmanii str. CDC 0876-58 prokMSA_id:9853 AF130888.1 Pantoea endophytica str. A1 prokMSA_id:9857 AB004748.1 Enterobacter gergoviae str. JCM1234 prokMSA_id:10006 AJ233431.1 Serratia marcescens subsp. marcescens prokMSA_id:10032 AF124035.1 Serratia marcescens prokMSA_id:10033 AF124036.1 Serratia marcescens prokMSA_id:10034 AF124037.1 Serratia marcescens prokMSA_id:10036 AF124040.1 Serratia marcescens prokMSA_id:10039 AB004750.1 Enterobacter aerogenes str. JCM1235 prokMSA_id:10041 AF047187.1 Kluyvera cochleae str. ATCC 51609 prokMSA_id:10064 AB004744.1 Enterobacter asburiae str. JCM6051 prokMSA_id:10079 AF130892.1 Pantoea endophytica str. A13 prokMSA_id:10081 AF130914.1 Pantoea endophytica str. A42 prokMSA_id:10082 AF130958.1 Pantoea endophytica str. A6 prokMSA_id:10095 Z96078.1 Enterobacter cancerogenus str. LMG 2693 prokMSA_id:10102 AF130960.1 Pantoea agglomerans str. A8 prokMSA_id:10103 AJ002811.1 Pantoea sp. R8 prokMSA_id:10124 Y17658.1 Raoultella terrigena str. ATCC33257T prokMSA_id:10125 Y17670.1 Raoultella terrigena str. SW4 prokMSA_id:10135 AB004752.1 Serratia liquefaciens str. JCM1245 prokMSA_id:10140 Z96079.1 Enterobacter dissolvens str. LMG 2683 prokMSA_id:10143 X87276.1 Klebsiella pneumoniae prokMSA_id:10144 X93214.1 Klebsiella pneumoniae prokMSA_id:16603 AJ296310.1 Serratia marcescens ZO1- prokMSA_id:20073 AF289497.1 cf. Serratia marcescen clone Caithness 8 prokMSA_id:20148 AF130982.1 Klebsiella pneumoniae subsp. ozaenae str. ATCC11296 subsp. prokMSA_id:20981 AF289502.1 cf. Serratia marcescen clone Caithness 72 prokMSA_id:21665 AF290494.1 cf. Pseudomonas sp. clone Welshpool 31 prokMSA_id:21806 AF129442.1 Raoultella terrigena str. ATCC 33257T prokMSA_id:27869 AF289500.1 cf. Serratia marcescen clone Caithness 25 prokMSA_id:29399 AF289501.1 cf. Serratia marcescen clone Caithness 32 prokMSA_id:30637 AJ296308.1 Serratia marcescens CPO1(4)CU prokMSA_id:32480 AF130983.1 Klebsiella pneumoniae subsp. rhinoscleromatis str. ATCC13884 subsp. prokMSA_id:35445 AF289499.1 cf. Serratia marcescen clone Caithness 23 prokMSA_id:35882 AF289498.1 cf. Serratia marcescen clone Caithness 11 prokMSA_id:37558 AF390084.1 Klebsiella pneumoniae str. DM-5 prokMSA_id:38659 AF395913.1 Enterobacter aerogenes prokMSA_id:43455 AJ297946.1 Serratia marcescens HO1- prokMSA_id:46431 AJ302156.1 Serratia marcescens RO1- prokMSA_id:48916 AE005174.2 Escherichia coli O157:H7 str. EDL933 prokMSA_id:49069 NC_002655.2 Escherichia coli O157:H7 EDL933 prokMSA_id:49498 AF321020.2 Enterobacter sp. str. GOBB3-C104 prokMSA_id:49908 NC_002695.1 Escherichia coli O157:H7 prokMSA_id:50412 AF126103.1 Enterobacter sp. str. 16-31 prokMSA_id:51811 AJ277977.1 Leclercia adecarboxylata str. WG 184 prokMSA_id:51865 AJ296306.1 Serratia marcescens 90-166 prokMSA_id:53771 AF126102.1 Enterobacter sp. str. 3-45 prokMSA_id:54081 AJ296309.1 Serratia marcescens WO1- prokMSA_id:56115 AY043387.1 Serratia marcescens str. AU1209 prokMSA_id:56472 AY043389.1 Serratia marcescens str. AU1388 prokMSA_id:56537 AF513468.1 Enterobacteriaceae isolate str. PH29 prokMSA_id:60328 AF534213.1 soil clone Phe50 prokMSA_id:60369 AF513469.1 Enterobacteriaceae isolate str. PH31 prokMSA_id:61809 AF529356.1 PCE-contaminated site clone CLs91 prokMSA_id:61810 AF529354.1 PCE-contaminated site clone CLs85 prokMSA_id:61815 AF529347.1 PCE-contaminated site clone CLs114 prokMSA_id:61827 AF529337.1 PCE-contaminated site clone CLi53 prokMSA_id:62411 AF529100.1 trichloroethene-contaminated site clone FTL260 proteobacterium prokMSA_id:63596 AY043391.1 Klebsiella pneumoniae str. AU1496 prokMSA_id:63597 AY043390.1 Morganella morganii str. AU1491 prokMSA_id:63598 AY043385.1 Serratia marcescens str. AU664 prokMSA_id:64270 AF394539.1 Pantoea sp. str. P102 prokMSA_id:64272 AF394537.1 Klebsiella pneumoniae str. 342 prokMSA_id:65355 AB086230.1 Cedecea neteri str. GTC1717 prokMSA_id:65407 AF511431.1 Serratia marcescens CCCO6 prokMSA_id:66201 AJ278106.1 Klebsiella sp. str. RS1 prokMSA_id:66579 AY098487.1 Escherichia coli AK108 prokMSA_id:68953 AB035926.1 Escherichia coli O157:H7 str. RIMD0509952 prokMSA_id:68954 AB035923.1 Escherichia coli O157:H7 str. RIMD0509952 prokMSA_id:70560 AJ251469.1 Enterobacter cloacae prokMSA_id:71282 AY082447.1 neutral pH mine biofilm isolate 253a prokMSA_id:71494 AJ276393.1 Leclercia adecarboxylata str. LBV 449 prokMSA_id:71762 AF394538.1 Pantoea sp. str. P101 prokMSA_id:74266 AF417870.1 Pantoea sp. YSS/2001-2 prokMSA_id:75525 AE016764.1 Escherichia coli str. CFT073 prokMSA_id:77919 AB098582.1 Enterobacter sp. str. TUT1014 prokMSA_id:80575 AJ508302.1 Enterobacter hormaechei str. CIP 103441 prokMSA_id:82917 AF493976.1 Cedecea davisae str. DSM 4568 prokMSA_id:84051 AY230763.1 Enterobacter sp. str. 2002-2301161 prokMSA_id:84367 AJ550467.1 Serratia marcescens prokMSA_id:85034 AF494202.1 Serratia marcescens str. N9 prokMSA_id:85372 AB099402.1 Enterobacter aerogenes str. ATCC 43175 prokMSA_id:90603 AY302437.1 Klebsiella oxytoca str. NG14 prokMSA_id:91042 AY345398.1 Green Lake water isolate str. G2 prokMSA_id:91567 AY345541.1 Lake Wai'ele'ele water clone LWSR-26 prokMSA_id:91628 AY345576.1 Green Lake water bottom clone GLB-2 prokMSA_id:91733 AY345581.1 Green Lake water surface clone GLS5 prokMSA_id:92667 AB117954.1 Serratia marcescens str. HokM prokMSA_id:93671 AB111105.1 iron-reducing clone Core-2 prokMSA_id:94946 AY369139.1 Klebsiella pneumoniae prokMSA_id:97959 AY395011.1 Serratia marcescens NAB5 prokMSA_id:99684 AY566180.1 Serratia marcescens SA Ant10(2) prokMSA_id:99716 AY451327.1 Leclercia adecarboxylata str. TERIPS4040 prokMSA_id:101389 AY376692.1 sugarcane mealybug endosymbiont clone P18 prokMSA_id:101561 AY376693.1 sugarcane mealybug endosymbiont clone O16 prokMSA_id:101634 AY373829.1 Salmonella subterranea str. FRC1 prokMSA_id:101738 AY376694.1 sugarcane mealybug endosymbiont clone O11 prokMSA_id:101896 AY376695.1 sugarcane mealybug endosymbiont clone O10 prokMSA_id:101993 AY514431.1 Serratia marcescens str. N1.6 prokMSA_id:102051 AY376696.1 sugarcane mealybug endosymbiont clone M29 prokMSA_id:102094 AJ639856.1 Enterobacter sp. str. B-14 prokMSA_id:102143 AY514432.1 Serratia marcescens str. N1.8 prokMSA_id:102206 AY376697.1 sugarcane mealybug endosymbiont clone N7 prokMSA_id:102286 AY514433.1 Serratia marcescens str. N1.14 prokMSA_id:102300 AJ846269.1 Serratia sp. HHS4 prokMSA_id:102318 AB187017.1 Suiyo seamount hydrothermal vent water 0.2micro-m filterable fraction clone SSM-EB09 prokMSA_id:102346 AY376698.1 sugarcane mealybug endosymbiont clone N8 prokMSA_id:102446 AY514434.1 Serratia marcescens str. N2.4 prokMSA_id:102510 AY376699.1 sugarcane mealybug endosymbiont clone O44 prokMSA_id:102605 AY514435.1 Serratia marcescens str. N4.1 prokMSA_id:103684 AY551938.1 Serratia marcescens SA Ant16 prokMSA_id:104044 AB167000.1 Enterobacter sp. str. NT N71 prokMSA_id:105458 AY689046.1 Enterobacter sp. str. 6B_8 prokMSA_id:106073 AY485680.1 Serratia marcescens QL-01 prokMSA_id:106157 AY376700.1 sugarcane mealybug endosymbiont clone P41 prokMSA_id:106168 AY555794.1 Bor Khlueng hot spring clone PK81 prokMSA_id:106326 AY376701.1 sugarcane mealybug endosymbiont clone Q1 prokMSA_id:106489 AY376702.1 sugarcane mealybug endosymbiont clone O3 prokMSA_id:106646 AY376703.1 sugarcane mealybug endosymbiont clone P23 prokMSA_id:106802 AY376704.1 sugarcane mealybug endosymbiont clone N2 prokMSA_id:106948 AY376705.1 sugarcane mealybug endosymbiont clone O6 prokMSA_id:107106 AY376706.1 sugarcane mealybug endosymbiont clone N31 prokMSA_id:107254 AY376707.1 sugarcane mealybug endosymbiont clone O39 prokMSA_id:107357 AB114621.1 rice plant clone ER-9 prokMSA_id:107396 AY376708.1 sugarcane mealybug endosymbiont clone P13 prokMSA_id:107546 AY376709.1 sugarcane mealybug endosymbiont clone P37 prokMSA_id:107876 BA000007.2 Escherichia coli str. O157:H7 prokMSA_id:108036 AY756180.1 Enterobacter sp. str. D1 prokMSA_id:108412 AY785257.1 microbial fuel cell anode clone 26 prokMSA_id:108745 AY787819.1 Enterobacter cloacae CR1 prokMSA_id:108906 AB193944.1 obtained Suiyo Seamount hydrothermal vent water 0.2 micro-m-captured fraction clone SSM263-EB06 prokMSA_id:109433 AY700604.1 Australia: Great Barrier Reef clone PDA-OTU6 prokMSA_id:109435 AY700606.1 Australia: Great Barrier Reef clone PDA-OTU8 prokMSA_id:109446 AY700617.1 Australia: Great Barrier Reef clone PDC-OTU10 prokMSA_id:109687 AY598354.1 Klebsiella pneumoniae str. MCM B-325 prokMSA_id:109706 AY510238.1 microbial mat cave sulfidic spring clone LKC3_125.60 prokMSA_id:109984 AY510235.1 microbial mat cave sulfidic spring clone LKC3_125.59 prokMSA_id:110131 AY510237.1 microbial mat cave sulfidic spring clone LKC3_125.3 prokMSA_id:110244 AY842145.1 Chinese Paris Rhizome's Endophyte isolate str. SS04 prokMSA_id:110468 AY510234.1 microbial mat cave sulfidic spring clone LKC3_125.46 prokMSA_id:110694 AY834756.1 Rhodopseudomonas palustris str. 2c prokMSA_id:110883 AY498856.1 Serratia marcescens str. MG1 prokMSA_id:111122 AY842146.1 Chinese Paris Rhizome's Endophyte isolate str. SS05 prokMSA_id:111147 AY842147.1 Chinese Paris Rhizome's Endophyte isolate str. SS06 prokMSA_id:111243 AY510236.1 microbial mat cave sulfidic spring clone LKC3_125.2 prokMSA_id:111510 AY864077.1 nodule isolate str. CCBAU 41088 prokMSA_id:111736 AF227851.1 Pantoea sp. str. 82353 prokMSA_id:112171 AJ605115.1 Escherichia coli prokMSA_id:112441 AY831405.1 Escherichia coli str. AB1157 prokMSA_id:112823 AY914069.1 Serratia sp. R-1 prokMSA_id:112865 AY830396.1 Klebsiella pneumoniae Ml prokMSA_id:112942 AY827577.1 Serratia sp. MLO-1 prokMSA_id:113029 AY827578.1 Klebsiella sp. MLO-2 prokMSA_id:113335 AY927692.1 Serratia marcescens str. ITRC_S7 prokMSA_id:113996 AY830395.1 Klebsiella pneumoniae Fm 2.43.5.9.1.1.8642 OTU 32 seqs prokMSA_id:9787 U80199.1 Pectobacterium subsp. wasabiae str. ATCC 43316 prokMSA_id:9788 AJ223408.1 Pectobacterium subsp. wasabiae str. ICMP 9121T prokMSA_id:10239 X82251.1 Xenorhabdus nematophilus prokMSA_id:10240 Z76737.1 Xenorhabdus nematophila str. N2-4 prokMSA_id:10241 Z76738.1 Xenorhabdus nematophila str. RIOBRAVIS prokMSA_id:10298 X82254.1 Xenorhabdus beddingii prokMSA_id:10300 D78009.1 Xenorhabdus nematophila str. ATCC19061T prokMSA_id:61196 AF520712.1 Dickeya dieffenbachiae str. CFBP 2051 prokMSA_id:61197 AF520711.2 Dickeya zeae str. CFBP 2052 prokMSA_id:61200 AF520709.2 Erwinia chrysanthemi str. CFBP 1270 prokMSA_id:61202 AF520707.1 Dickeya dadantii str. CFBP 1269 prokMSA_id:61203 AF520708.1 Dickeya dianthicola str. CFBP 1200 prokMSA_id:63456 AF522294.1 Xenorhabdus nematophila str. CB6 prokMSA_id:66731 AF373194.1 Pectobacterium subsp. wasabiae str. 92 prokMSA_id:66732 AF373193.1 Pectobacterium subsp. wasabiae str. 91 prokMSA_id:66748 AF373173.1 Erwinia chrysanthemi str. 340 prokMSA_id:66750 AF373175.1 Erwinia chrysanthemi str. 582 prokMSA_id:72670 AF373195.1 Pectobacterium subsp. wasabiae str. 93 prokMSA_id:72805 AF373202.1 Erwinia chrysanthemi str. 580 prokMSA_id:81553 AY207083.1 Pectobacterium carotovorum subsp. brasiliensis str. 212T subsp. prokMSA_id:82259 AY207086.1 Pectobacterium carotovorum subsp. brasiliensis str. 8 subsp. prokMSA_id:82434 AY207085.1 Pectobacterium carotovorum subsp. brasiliensis str. 371 subsp. prokMSA_id:85814 AY216500.1 Photorhabdus sp. str. Q614 prokMSA_id:87839 AY286478.1 Xenorhabdus nematophila prokMSA_id:87960 AY278674.1 Xenorhabdus nematophila str. DSM3370 prokMSA_id:93777 AY360397.1 Erwinia chrysanthemi str. S3-1 prokMSA_id:100489 AY521241.1 Xenorhabdus nematophila str. F1 prokMSA_id:104075 AB114635.1 Klebsiella sp. P3 prokMSA_id:104228 AB114636.1 Klebsiella sp. P4 prokMSA_id:106585 AJ810292.1 Xenorhabdus innexi str. DSM 16336 prokMSA_id:107059 AJ810295.1 Xenorhabdus szentirmaii str. DSM 16338 prokMSA_id:108163 AY521242.1 Xenorhabdus nematophila 2.43.5.9.1.1.8649 OTU 1 seq prokMSA_id:10394 X75277.1 Yersinia aldovae 2.43.5.9.1.1.8650 OTU 2 seqs prokMSA_id:10395 X60418.1 Plesiomonas shigelloides prokMSA_id:10396 X74688.1 Plesiomonas shigelloides str. ATCC 14029T 2.43.5.9.1.1.8652 OTU 1 seq prokMSA_id:74610 AJ245595.1 USA clone 11/3 2.43.5.9.1.1.8683 OTU 1 seq prokMSA_id:9987 AF005235.1 primary endosymbiont Sitophilus oryzae str. SFr of 2.43.5.9.1.1.8684 OTU 4 seqs prokMSA_id:86576 AJ560634.1 Photorhabdus luminescens thracensis subsp. thraceaensis str. 39-8 = DSM 15199 subsp. prokMSA_id:87480 AY278667.1 Photorhabdus sp. str. KOH prokMSA_id:87583 AY278668.1 Photorhabdus sp. str. Az29 prokMSA_id:87761 AY278669.1 Photorhabdus sp. str. MOL 2.43.5.9.1.1.8686 OTU 1 seq prokMSA_id:10332 AJ232875.1 rhizoplane Lolium perenne clone LRE12 2.43.5.9.1.1.8690 OTU 1 seq prokMSA_id:85525 AY223838.1 Serratia marcescens str. ost 3 2.43.5.9.1.1.8693 OTU 35 seqs prokMSA_id:9875 U80183.1 Pantoea agglomerans str. ATCC 33261 prokMSA_id:9877 AF130895.1 Pantoea agglomerans str. new*16 prokMSA_id:9878 AF130900.1 Pantoea agglomerans str. A22 prokMSA_id:9881 AF130906.1 Pantoea agglomerans str. A28 prokMSA_id:9884 AF130924.1 Pantoea agglomerans str. A54 prokMSA_id:9885 AF130927.1 Pantoea agglomerans str. A57 prokMSA_id:9886 AF130930.1 Pantoea agglomerans str. A60 prokMSA_id:9889 AF130934.1 Pantoea agglomerans str. A65 prokMSA_id:9890 AF130935.1 Pantoea agglomerans str. A67 prokMSA_id:9892 AF130943.1 Pantoea agglomerans str. A77 prokMSA_id:9893 AF130944.1 Pantoea agglomerans str. A79 prokMSA_id:9894 AF130946.1 Pantoea agglomerans str. A81 prokMSA_id:9895 AF130951.1 Pantoea agglomerans str. A91 prokMSA_id:9896 AF130952.1 Pantoea agglomerans str. A92 prokMSA_id:9900 Z96082.1 Pantoea agglomerans str. LMG 2565 prokMSA_id:9906 U80202.1 Pantoea agglomerans str. ATCC 33243 prokMSA_id:9910 AF130887.1 Pantoea agglomerans str. A20 prokMSA_id:9915 AF130907.1 Pantoea agglomerans str. A29 prokMSA_id:9917 AF130912.1 Pantoea agglomerans str. A40 prokMSA_id:9919 AF130916.1 Pantoea agglomerans str. new*45con prokMSA_id:9922 AF130919.1 Pantoea agglomerans str. A48 prokMSA_id:9923 AF130925.1 Pantoea agglomerans str. A55 prokMSA_id:9925 AF130928.1 Pantoea agglomerans str. A58 prokMSA_id:9930 AF130938.1 Pantoea agglomerans str. A70 prokMSA_id:9932 AF130941.1 Pantoea agglomerans str. A73 prokMSA_id:9934 AF130945.1 Pantoea agglomerans str. A80 prokMSA_id:9935 AF130947.1 Pantoea agglomerans str. A83 prokMSA_id:9936 AF130948.1 Pantoea agglomerans str. A84 prokMSA_id:9937 AF130949.1 Pantoea agglomerans str. A87 prokMSA_id:9941 AF157694.1 Pantoea agglomerans str. drh1 prokMSA_id:18938 AY048885.1 rhizosphere clone L3-17C7 prokMSA_id:47393 AJ233423.1 Pantoea agglomerans str. DSM 3493 prokMSA_id:66729 AF373196.1 Pantoea agglomerans str. LMG 2565 prokMSA_id:70540 AF130954.1 Pantoea agglomerans str. NCPPB 2971 prokMSA_id:73786 AJ251466.1 Pantoea agglomerans str. NCTC9381T 2.43.5.9.1.1.8700 OTU 3 seqs prokMSA_id:79290 AF465793.1 Baumannia cicadellinicola prokMSA_id:79577 AF465794.1 Baumannia cicadellinicola prokMSA_id:80483 AF489427.1 Baumannia cicadellinicola 2.43.5.9.1.1.8701 OTU 1 seq prokMSA_id:52942 AF263558.1 Blastopsylla occidentalis symbiont 2.43.5.9.1.1.8711 OTU 2 seqs prokMSA_id:10171 AJ233432.1 Serratia odorifera str. DSM 4582 prokMSA_id:43863 AF286870.1 Serratia odorifera str. DSM 4582 2.43.5.9.1.1.8712 OTU 11 seqs prokMSA_id:10170 AJ233430.1 Serratia grimesii str. DSM 30063 prokMSA_id:10173 AJ233434.1 Serratia proteamaculans str. DSM 4543 prokMSA_id:10174 AJ233435.1 Serratia quinivorans str. DSM 4597 prokMSA_id:24212 AF286868.1 Serratia grimesii str. LMG 7883 prokMSA_id:24791 AJ279051.1 Serratia quinivorans subsp. quinovora str. CP6g prokMSA_id:27899 AJ306725.1 Serratia liquefaciens str. CIP 103238T prokMSA_id:30445 AJ302155.1 Enterobacteriaceae sp. JM983 prokMSA_id:47869 AJ279048.1 Serratia quinivorans subsp. quinovora str. CP6d prokMSA_id:64290 AY040208.1 Serratia proteamaculans prokMSA_id:73291 AF286867.1 Serratia quinivorans subsp. quinovora str. LMG 7887 prokMSA_id:83887 AY253924.1 Serratia liquefaciens k 100 2.43.5.9.1.1.8715 OTU 4 seqs prokMSA_id:10244 D78007.1 Xenorhabdus bovienii str. ATCC35271T prokMSA_id:10246 X82252.1 Xenorhabdus bovienii prokMSA_id:10247 AF079816.1 Xenorhabdus sp. str. OS21 prokMSA_id:89531 AY317154.1 Xenorhabdus bovienii str. CB54 2.43.5.9.1.1.8716 OTU 1 seq prokMSA_id:9868 AB033602.1 Pantoea agglomerans 2.43.5.9.1.1.8739 OTU 9 seqs prokMSA_id:10163 AB004745.1 Serratia ficaria str. JCM1241 prokMSA_id:10167 AJ233427.1 Serratia entomophila str. DSM 12358 prokMSA_id:10168 AJ233428.1 Serratia ficaria str. DSM 4569 prokMSA_id:10172 AJ233433.1 Serratia plymuthica str. DSM 4540 prokMSA_id:20233 AF286872.1 Serratia plymuthica str. DSM 4540 prokMSA_id:30328 AJ417371.1 Serratia sp. str. White prokMSA_id:30929 AJ279054.1 Serratia ficaria str. NCTC 12148 prokMSA_id:45752 AJ279055.1 Serratia plymuthica str. RK prokMSA_id:103309 AY394724.1 Serratia sp. str. RVH1 2.43.5.9.1.1.8740 OTU 1 seq prokMSA_id:73843 AF373201.1 Erwinia chrysanthemi str. 573 2.43.5.9.1.1.8742 OTU 1 seq prokMSA_id:9665 AF084835.1 USA:New York isolate str. KN4 2.43.5.9.1.1.8758 OTU 1 seq prokMSA_id:9861 U80201.1 Pectobacterium cypripedii str. ATCC 29267 2.43.5.9.1.1.8761 OTU 3 seqs prokMSA_id:28751 AB064516.1 Buchnera aphidicola (Yamatocallis tokyoensis) #526 (Yamatocallis prokMSA_id:43984 AB064515.1 Buchnera aphidicola (Yamatocallis tokyoensis) #525 (Yamatocallis prokMSA_id:47317 AB064517.1 Buchnera aphidicola (Yamatocallis tokyoensis) #566 (Yamatocallis 2.43.5.9.1.1.8770 OTU 1 seq prokMSA_id:66319 AF507000.1 soda lake clone Br-35 2.43.5.9.1.1.8773 OTU 1 seq prokMSA_id:43351 AF352384.1 Klebsiella pneumoniae 2.43.5.9.1.1.8775 OTU 1 seq prokMSA_id:10194 AB031646.1 clone TIHP368-30 2.43.5.9.1.1.8778 OTU 2 seqs prokMSA_id:9650 M63254.1 Buchnera aphidicola prokMSA_id:53693 AJ296750.1 Buchnera aphidicola (Pemphigus populi) 2.43.5.9.1.1.8801 OTU 5 seqs prokMSA_id:9953 X92550.1 "Candidatus camponotii" prokMSA_id:40380 AJ250715.1 Candidatus Blochmannia herculeanus str. USA herculeanus prokMSA_id:60411 AF495758.1 symbiont prokMSA_id:85963 AY196850.1 Candidatus Blochmannia pennsylvanicus Cpenn00 prokMSA_id:102503 AY334378.1 Camponotus novaboracensis symbiont 2.43.5.9.1.1.8811 OTU 1 seq prokMSA_id:32418 AB030020.1 Antonina crawii (Insecta Homoptera Pseudooccidae) symbiont 2.43.5.9.1.1.8820 OTU 1 seq prokMSA_id:9962 AF022875.1 Wigglesworthia glossinidia 2.43.5.9.1.1.8842 OTU 3 seqs prokMSA_id:10197 U80207.1 Brenneria rubrifaciens str. ATCC 29291 prokMSA_id:10198 Z96098.1 Brenneria rubrifaciens str. LMG 2709 prokMSA_id:51229 AJ233418.1 Brenneria rubrifaciens str. DSM 4483 2.43.5.9.1.1.8846 OTU 1 seq prokMSA_id:10245 D78010.1 Xenorhabdus poinarii str. DSM4768T 2.43.5.9.1.1.8862 OTU 26 seqs prokMSA_id:10219 Z76741.1 Photorhabdus luminescens str. V6-1 prokMSA_id:10221 Z76743.1 Photorhabdus luminescens subsp. laumondii str. HP88 prokMSA_id:10222 Z76744.1 Photorhabdus luminescens str. Brecon prokMSA_id:10224 Z76749.1 Photorhabdus luminescens str. Q614 prokMSA_id:10231 Y17605.1 Photorhabdus luminescens str. LN2 prokMSA_id:17167 AJ295161.1 Photorhabdus luminescens subsp. laumondii str. TUR1 subsp. prokMSA_id:46111 AJ007404.1 Photorhabdus luminescens subsp. laumondii str. TT01 subsp. prokMSA_id:72527 AJ007359.1 Photorhabdus luminescens subsp. akhurstii str. FRG04 subsp. prokMSA_id:74806 AJ295162.1 Photorhabdus luminescens subsp. laumondii str. TUR2 subsp. prokMSA_id:83069 AJ560630.1 Photorhabdus luminescens subsp. kayaii str. 1121 = DSM 15194 subsp. prokMSA_id:85007 AJ560633.1 Photorhabdus luminescens subsp. laumondii str. 07-5 = DSM 15195 subsp. prokMSA_id:85557 AJ560631.1 Photorhabdus luminescens subsp. kayaii str. 68-3 = DSM 15198 subsp. prokMSA_id:85843 AJ560632.1 Photorhabdus luminescens subsp. kayaii str. 47-10 = DSM 15197 subsp. prokMSA_id:86788 AY278649.1 Photorhabdus luminescens subsp. laumondii str. Az36 prokMSA_id:86852 AY278650.1 Photorhabdus luminescens subsp. laumondii str. ARG prokMSA_id:87048 AY278646.1 Photorhabdus luminescens subsp. laumondii str. TT01 prokMSA_id:87446 AY278647.1 Photorhabdus luminescens subsp. laumondii str. Brecon prokMSA_id:87568 AY278645.1 Photorhabdus luminescens subsp. akhurstii str. IS5 prokMSA_id:87663 AY278648.1 Photorhabdus luminescens subsp. laumondii str. HP88 prokMSA_id:94459 BX571874.1 Photorhabdus luminescens subsp. laumondii str. TTO1 prokMSA_id:94735 BX571859.1 Photorhabdus luminescens subsp. laumondii str. TTO1 prokMSA_id:95015 BX571861.1 Photorhabdus luminescens subsp. laumondii str. TTO1 prokMSA_id:95017 BX571863.1 Photorhabdus luminescens subsp. laumondii str. TTO1 prokMSA_id:95065 BX571873.1 Photorhabdus luminescens subsp. laumondii str. TTO1 prokMSA_id:95127 BX571860.1 Photorhabdus luminescens subsp. laumondii str. TTO1 prokMSA_id:98744 NC_005126.1 Photorhabdus luminescens subsp. laumondii TTO1 2.43.5.9.1.1.8864 OTU 8 seqs prokMSA_id:9644 M27039.1 Acyrthosyphon pisum symbiont P prokMSA_id:20966 AB033773.1 Buchnera sp prokMSA_id:35977 AB033776.1 Buchnera sp prokMSA_id:40619 AB033775.1 Buchnera sp prokMSA_id:47707 NC_002528.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) prokMSA_id:51167 AB033774.1 Buchnera sp prokMSA_id:52753 AB033772.1 Buchnera sp prokMSA_id:110651 BA000003.2 Buchnera aphidicola (Acyrthosiphon pisum) str. APS Tokyo1998 str. 2.43.5.9.1.1.8866 OTU 4 seqs prokMSA_id:9961 X92552.1 "Candidatus camponotii" prokMSA_id:9974 X92549.1 "Candidatus camponotii" prokMSA_id:21535 AJ245597.1 Argentina clone 13/5 prokMSA_id:91372 NC_005061.1 Candidatus Blochmannia floridanus 2.43.5.9.1.1.8885 OTU 5 seqs prokMSA_id:77662 AB074625.1 pea aphid symbiont clone APe2_17 prokMSA_id:77839 AB074626.1 pea aphid symbiont clone APe2_50 prokMSA_id:85088 AB089246.1 Morganella morganii str. AP28 prokMSA_id:85614 AB099401.1 Proteus vulgaris str. AU34 prokMSA_id:110488 AJ781005.1 Morganella sp. str. JB-T16 2.43.5.9.1.1.8886 OTU 24 seqs prokMSA_id:9756 Z47544.1 Salmonella typhi str. Ty2 ATCC 19430 prokMSA_id:9760 Z49264.1 Salmonella typhimurium str. E10 NCTC 8391 prokMSA_id:9773 AF170176.1 Salmonella typhimurium LT2 str. SGSC1412 prokMSA_id:17230 AE008706.1 Salmonella typhimurium LT2 str. LT2; SGSC 1412; ATCC 700720 LT2 prokMSA_id:26536 AE008881.1 Salmonella typhimurium LT2 str. LT2; SGSC 1412; ATCC 700720 LT2 prokMSA_id:27007 AL627280.1 Salmonella subsp. enterica serovar Typhi str. CT18 subsp. prokMSA_id:34689 AE008820.1 Salmonella typhimurium LT2 str. LT2; SGSC 1412; ATCC 700720 LT2 prokMSA_id:37413 AF332600.1 Salmonella subsp. enterica prokMSA_id:40959 AF227869.1 Salmonella subsp. enterica serovar Typhimurium str. 65946 subsp. prokMSA_id:41705 NC_003197.1 Salmonella typhimurium LT2 prokMSA_id:51836 AE008893.1 Salmonella typhimurium LT2 str. LT2; SGSC 1412; ATCC 700720 LT2 prokMSA_id:52343 AE008857.1 Salmonella typhimurium LT2 str. LT2; SGSC 1412; ATCC 700720 LT2 prokMSA_id:54877 AE008895.1 Salmonella typhimurium LT2 str. LT2; SGSC 1412; ATCC 700720 LT2 prokMSA_id:54921 AE008886.1 Salmonella typhimurium LT2 str. LT2; SGSC 1412; ATCC 700720 LT2 prokMSA_id:65338 AL627279.1 Salmonella subsp. enterica serovar Typhi str. CT18 subsp. prokMSA_id:65339 AL627276.1 Salmonella enterica subsp. enterica serovar Typhi prokMSA_id:72996 AF227867.1 Salmonella subsp. enterica serovar Montevideo str. 47074 subsp. prokMSA_id:74428 AF227868.1 Salmonella enterica subsp. enterica serovar Dublin prokMSA_id:74497 AF233324.1 Salmonella typhimurium LT2 str. SGSC1412 prokMSA_id:84433 AE016845.1 Salmonella serovar Typhi subsp. enterica str. Ty2 subsp. prokMSA_id:85807 AE016842.1 Salmonella serovar Typhi subsp. enterica str. Ty2 subsp. prokMSA_id:86258 NC_004631.1 Salmonella enterica subsp. enterica serovar Typhi Ty2 prokMSA_id:109134 CP000026.1 Salmonella subsp. enterica serovar Paratypi str. ATCC 9150 prokMSA_id:111631 NC_006511.1 Salmonella subsp. enterica serovar Paratypi str. ATCC 9150 2.43.5.9.1.1.8890 OTU 6 seqs prokMSA_id:10129 Y17663.1 Raoultella planticola str. 7444 prokMSA_id:10130 Y17666.1 Raoultella ornithinolytica str. FSK9555 prokMSA_id:10131 X93216.1 Klebsiella planticola prokMSA_id:84971 AB099400.1 Raoultella planticola str. 4131 prokMSA_id:86319 AB099403.1 Raoultella planticola str. ATCC 43176 prokMSA_id:86680 AB099407.1 Raoultella planticola str. 8433 2.43.5.9.1.1.8892 OTU 9 seqs prokMSA_id:10181 U93263.1 Aranicola proteolyticus prokMSA_id:20361 AJ310680.1 smoked salmon clone 228 prokMSA_id:30517 AJ310681.1 smoked salmon clone 244 prokMSA_id:30806 AJ279050.1 Serratia quinivorans subsp. quinovora str. CP6f prokMSA_id:33909 AJ279053.1 Serratia quinivorans subsp. quinovora str. PC1 prokMSA_id:41789 AJ310682.1 smoked salmon clone 231 prokMSA_id:52641 AJ279045.1 Serratia quinivorans subsp. quinovora str. CP6a prokMSA_id:85224 AY243097.1 Serratia liquefaciens str. Hf1 prokMSA_id:113392 AY902209.1 Serratia proteamaculans str. BR5 2.43.5.9.1.1.8907 OTU 1 seq prokMSA_id:10255 Z76739.1 Xenorhabdus japonica str. SK-1T 2.43.5.9.1.1.8910 OTU 1 seq prokMSA_id:17473 AJ296748.1 Buchnera aphidicola (Eriosoma lanuginosum) (Eriosoma 2.43.5.9.1.1.8934 OTU 17 seqs prokMSA_id:9792 Z96091.1 Pectobacterium carotovorum str. LMG 2466 prokMSA_id:9988 U80197.1 Pectobacterium carotovorum subsp. carotovora str. ATCC 15713 subsp. prokMSA_id:9989 Z96089.1 Pectobacterium carotovorum str. LMG 2404-T prokMSA_id:9991 AJ223407.1 Pectobacterium carotovorum subsp. odoriferum str. LMG 17566-T subsp. prokMSA_id:23248 AJ233411.1 Pectobacterium carotovorum str. DSM 30168 prokMSA_id:66723 AF373203.1 Erwinia chrysanthemi str. GSPB 1406 prokMSA_id:66736 AF373189.1 Pectobacterium subsp. carotovorum str. E161 subsp. prokMSA_id:66737 AF373188.1 Pectobacterium subsp. carotovorum str. E155 subsp. prokMSA_id:66738 AF373186.1 Pectobacterium subsp. carotovorum str. GSPB 2806 subsp. prokMSA_id:66739 AF373187.1 Pectobacterium subsp. carotovorum str. 441 subsp. prokMSA_id:66740 AF373185.1 Pectobacterium subsp. carotovorum str. 21 prokMSA_id:70490 AF373183.1 Pectobacterium subsp. atrosepticum str. E1 prokMSA_id:72751 AF373174.1 Erwinia chrysanthemi str. GSPB 413 prokMSA_id:73789 AF373192.1 Pectobacterium carotovorum subsp. odoriferum str. 1880 subsp. prokMSA_id:73905 AF373184.1 Pectobacterium subsp. vasculorum str. 29 prokMSA_id:74117 AF373191.1 Pectobacterium carotovorum subsp. odoriferum str. 1878 subsp. prokMSA_id:106262 AY690721.1 Erwinia sp. str. MK14 2.43.5.9.1.1.8936 OTU 6 seqs prokMSA_id:10108 AB004754.1 Klebsiella oxytoca prokMSA_id:10109 Y17660.1 Klebsiella oxytoca str. 5725y prokMSA_id:10110 Y17661.1 Klebsiella oxytoca str. 5884 prokMSA_id:26469 AB053117.1 Klebsiella oxytoca prokMSA_id:58294 AF543283.1 Klebsiella oxytoca str. ChDC OS31 prokMSA_id:71572 AF319525.3 Klebsiella oxytoca 2.43.5.9.1.1.8954 OTU 11 seqs prokMSA_id:9976 M99060.1 Glossina pallidipes (tsetse) endosymbiont prokMSA_id:9981 U64869.1 Glossina austeni S-endosymbiont prokMSA_id:9982 U64870.1 Glossina brevipalpis S-endosymbiont prokMSA_id:9983 U64868.1 Glossina fuscipes S-endosymbiont prokMSA_id:9984 U64867.1 Glossina palpalis S-endosymbiont prokMSA_id:95777 AF548135.1 Sodalis glossinidius prokMSA_id:97799 AF548136.1 Sodalis glossinidius prokMSA_id:111407 AY861703.1 Sodalis glossinidius str. GP-SG prokMSA_id:112007 AY861702.1 Sodalis glossinidius str. GA-SG prokMSA_id:112226 AY861701.1 Sodalis glossinidius str. GM-SG prokMSA_id:112282 AY861704.1 Sodalis glossinidius str. GF-SG 2.43.5.9.1.1.8968 OTU 1 seq prokMSA_id:82772 AB099406.1 Morganella morganii str. JU27 2.43.5.9.1.1.8974 OTU 1 seq prokMSA_id:9711 U92197.1 Salmonella subsp. enterica serovar Agona str. Sa1 subsp. 2.43.5.9.1.1.9014 OTU 6 seqs prokMSA_id:17372 AB064512.1 Buchnera aphidicola (Yamatocallis hirayamae) #567 prokMSA_id:29368 AB064511.1 Buchnera aphidicola (Yamatocallis tokyoensis) #566 prokMSA_id:35589 AB064510.1 Buchnera aphidicola (Yamatocallis tokyoensis) #526 prokMSA_id:38168 AB064507.1 Buchnera aphidicola (Yamatocallis tokyoensis) #207 (Yamatocallis prokMSA_id:40406 AB064508.1 Buchnera aphidicola (Yamatocallis tokyoensis) #317 (Yamatocallis prokMSA_id:42294 AB064509.1 Buchnera aphidicola (Yamatocallis tokyoensis) #525 2.43.5.9.1.1.9029 OTU 4 seqs prokMSA_id:81918 AY217761.1 Photorhabdus asymbiotica subsp. australis str. 9800946 subsp. prokMSA_id:91045 AY280572.1 Photorhabdus asymbiotica subsp. australis str. 9802892 prokMSA_id:91807 AY280574.1 Photorhabdus asymbiotica subsp. australis str. GCH001 prokMSA_id:91820 AY280573.1 Photorhabdus asymbiotica subsp. australis str. MB 2.43.5.9.1.1.9047 OTU 1 seq prokMSA_id:53447 AF263560.1 Calophya schini symbiont 2.43.5.9.1.1.9060 OTU 10 seqs prokMSA_id:10075 AB004691.1 Pantoea agglomerans str. JCM1236 prokMSA_id:10087 AF157695.1 Enterobacter cloacae str. drh3 prokMSA_id:10088 AF157688.1 Pantoea agglomerans str. 86350 prokMSA_id:27763 AF199029.1 Pantoea agglomerans str. SP1 prokMSA_id:40056 AF371852.1 phylotype OTU-226 swine intestine clone p-2172-s959-3 prokMSA_id:50084 AF371851.1 phylotype OTU-226 swine intestine clone p-2009-s959-5 prokMSA_id:60334 AF534207.1 soil clone Phe11 prokMSA_id:60351 AF534193.1 soil clone Caf17 prokMSA_id:72445 AF290495.1 cf. Pseudomonas sp. clone Welshpool 24 prokMSA_id:108534 AJ853891.1 Enterobacter ludwigii 2.43.5.9.1.1.9082 OTU 3 seqs prokMSA_id:10196 AJ223469.1 Brenneria quercina str. LMG 2724-T prokMSA_id:10199 U80210.1 Brenneria salicis str. ATCC 15712 prokMSA_id:10200 AJ233416.1 Brenneria quercina str. DSM 4561 2.43.5.9.1.1.9098 OTU 3 seqs prokMSA_id:10260 AF079811.1 Photorhabdus sp. str. NP1 prokMSA_id:10261 AF079812.1 Photorhabdus sp. str. OH10 prokMSA_id:10262 AF079813.1 Photorhabdus sp. str. SJ2 2.43.5.9.1.1.9106 OTU 1 seq prokMSA_id:10001 U20275.1 Host D. paulistorum bacterium strain DP 2.43.5.9.1.1.9135 OTU 1 seq prokMSA_id:66560 AJ487029.1 intestine Zophobas mori clone 2.43.5.9.1.1.9142 OTU 8 seqs prokMSA_id:9831 U80195.1 Erwinia amylovora str. ATCC 15580 prokMSA_id:9832 AJ233410.1 Erwinia amylovora str. DSM 30165 prokMSA_id:9833 AJ010485.1 Erwinia amylovora str. Ea1/79 prokMSA_id:47069 X83265.1 Erwinia amylovora prokMSA_id:70191 AF141894.1 Erwinia amylovora str. BC203(=Ea554) prokMSA_id:71495 AF140337.1 Erwinia amylovora str. BC200; Ea321 prokMSA_id:73119 AF141895.1 Erwinia amylovora str. BC204(=Ea246) prokMSA_id:73185 AF140341.1 Erwinia amylovora str. BC228; ATCC15580 2.43.5.9.1.1.9151 OTU 2 seqs prokMSA_id:53341 AF224827.1 clone Car36rc prokMSA_id:54261 AF224826.1 clone Car35rc 2.43.5.9.1.1.9156 OTU 1 seq prokMSA_id:41305 AJ296756.1 Buchnera aphidicola (Lachnus roboris) 2.43.5.9.1.1.9157 OTU 5 seqs prokMSA_id:29699 AF293623.1 Uroleucon astronomus symbiont prokMSA_id:42020 AF293618.1 Secondary symbiont type-U Acyrthosiphon pisum (rrs) clone 5B type-U prokMSA_id:50997 AF293627.1 Uroleucon solidaginis symbiont prokMSA_id:85563 AY136138.1 Acyrthosiphon pisum symbiont prokMSA_id:101809 AY136165.2 Uroleucon rudbeckiae symbiont 2.43.5.9.1.1.9196 OTU 1 seq prokMSA_id:10180 AF015258.1 Aquamonas haywardensis str. CDC 2404-94 EG121 2.43.5.9.1.1.9200 OTU 2 seqs prokMSA_id:9652 Y11973.1 Buchnera aphidicola prokMSA_id:24034 AJ296749.1 Buchnera aphidicola (Tetraneura caerulescens) (Tetraneura 2.43.5.9.1.1.9202 OTU 3 seqs prokMSA_id:52747 AF189697.1 Activated sludge isolate str. BC55 prokMSA_id:66563 AJ487027.1 intestine Zophobas mori clone prokMSA_id:85693 AB089245.1 Morganella morganii str. 87411 2.43.5.9.1.1.9252 OTU 1 seq prokMSA_id:9821 AF130971.1 Pantoea cedenensis str. A34 2.43.5.9.1.1.9256 OTU 1 seq prokMSA_id:9648 M63252.1 Buchnera aphidicola 2.43.5.9.1.1.9260 OTU 1 seq prokMSA_id:9649 AB013087.1 symbiont 2.43.5.9.1.1.9262 OTU 31 seqs prokMSA_id:10341 X68674.1 Yersinia enterocolitica serotype 0:3; strain 11472 Princess Alexandra Hospital Brisbane Australia prokMSA_id:10342 Z49828.1 Yersinia enterocolitica str. ER-3206-92 serotype O:8 prokMSA_id:10345 Z49829.1 Yersinia enterocolitica str. ER-26036-92 serotype O:3 prokMSA_id:10346 Z75316.1 Yersinia enterocolitica str. O:3 108 c prokMSA_id:10347 U63135.1 Yersinia enterocolitica German prokMSA_id:10348 X68673.1 Yersinia enterocolitica serotype 0:8; strain 8081 prokMSA_id:10349 Z49830.1 Yersinia enterocolitica prokMSA_id:10363 X75275.1 Yersinia ruckeri prokMSA_id:10386 X89573.1 Yersinia sp. YEM11A prokMSA_id:10389 X68672.1 Yersinia enterocolitica prokMSA_id:10391 X89574.1 Yersinia sp. YEM17B prokMSA_id:10393 X75276.1 Yersinia rohdei prokMSA_id:17691 AF366380.1 Yersinia intermedia str. ATCC 29909 prokMSA_id:17733 AF366381.1 Yersinia kristensenii str. ATCC 33638 prokMSA_id:23050 AF365948.1 Yersinia pseudotuberculosis str. R 708 LY prokMSA_id:23716 AF365950.1 Yersinia pseudotuberculosis str. R 1505 prokMSA_id:28126 AF365945.1 Yersinia pseudotuberculosis str. 1147 prokMSA_id:34461 AF366384.1 Yersinia rohdei str. ATCC 43380 prokMSA_id:37259 AF366382.1 Yersinia mollaretii str. ATCC 43969 prokMSA_id:38612 AF365936.1 Yersinia pseudotuberculosis str. Kuratani-2 prokMSA_id:39860 AF366376.1 Yersinia aldovae str. ATCC 35236 prokMSA_id:41539 AF282308.1 Yersinia enterocolitica str. 8081 prokMSA_id:41642 AF366377.1 Yersinia bercovieri str. ATCC 43970 prokMSA_id:41648 AF366379.1 Yersinia frederiksenii str. ATCC 33641 prokMSA_id:50988 AF366385.1 Yersinia ruckeri str. ATCC 29473 prokMSA_id:52901 AF366378.1 Yersinia enterocolitica prokMSA_id:107083 AJ627595.1 Yersinia kristensenii str. Y156 prokMSA_id:111180 AJ871363.1 Yersinia aldovae str. A125 prokMSA_id:113033 AY928252.1 isolate str. S10Fe31 prokMSA_id:113085 AY928250.1 isolate str. S4Fe31 prokMSA_id:113598 AY928258.1 isolate str. S17Fe31 2.43.5.9.1.1.9264 OTU 19 seqs prokMSA_id:10257 X82249.1 Photorhabdus luminescens prokMSA_id:10258 D78004.1 Photorhabdus luminescens str. ATCC29304 prokMSA_id:10264 Z76746.1 Photorhabdus luminescens str. WX2 prokMSA_id:10265 Z76747.1 Photorhabdus luminescens str. WX11 prokMSA_id:10266 Z76750.1 Photorhabdus temperata str. Mge1 prokMSA_id:10267 Z76751.1 Photorhabdus luminescens str. Meg2 prokMSA_id:10282 X82250.1 Photorhabdus luminescens str. Ehlers HSH2 prokMSA_id:10293 Z76748.1 Photorhabdus luminescens str. PE 87.3 prokMSA_id:30793 AJ007405.1 Photorhabdus temperata str. XINach prokMSA_id:86723 AY278663.1 Photorhabdus temperata str. Wx10 prokMSA_id:86767 AY278661.1 Photorhabdus temperata str. Wx9 prokMSA_id:86932 AY278655.1 Photorhabdus temperata str. Meg1 prokMSA_id:87111 AY278657.1 Photorhabdus temperata str. NC19 prokMSA_id:87269 AY278664.1 Photorhabdus temperata str. Wx11 prokMSA_id:87486 AY278651.1 Photorhabdus temperata str. K122 prokMSA_id:87645 AY278653.1 Photorhabdus temperata str. HL81 prokMSA_id:87936 AY278654.1 Photorhabdus temperata str. H4 prokMSA_id:87965 AY278658.1 Photorhabdus temperata str. Heliothidis prokMSA_id:88052 AY278662.1 Photorhabdus temperata str. Wx9Hyper 2.43.5.9.1.1.9265 OTU 1 seq prokMSA_id:84349 AY253919.1 Rahnella aquatilis k 8 2.43.5.9.1.1.9266 OTU 1 seq prokMSA_id:9994 Z14096.1 Parasite BEV of E.variegatus 2.43.5.9.1.1.9268 OTU 1 seq prokMSA_id:9995 U65654.1 Cimex lectularius endosymbiont 2.43.5.9.1.1.9273 OTU 1 seq prokMSA_id:24924 AJ296754.1 Buchnera aphidicola (Tuberolachnus salignus) (Tuberolachnus 2.43.5.9.1.1.9274 OTU 1 seq prokMSA_id:86519 AJ550468.1 Enterobacter sp. CC1 2.43.5.9.1.1.9276 OTU 1 seq prokMSA_id:10303 AJ233422.1 Obesumbacterium proteus str. DSM 2777 2.43.5.9.1.1.9285 OTU 1 seq prokMSA_id:9653 M63255.1 Buchnera aphidicola 2.43.5.9.1.1.9290 OTU 2 seqs prokMSA_id:79106 AF465795.1 Baumannia cicadellinicola prokMSA_id:79588 AF465797.1 Baumannia cicadellinicola 2.43.5.9.1.1.9293 OTU 2 seqs prokMSA_id:20928 AJ245598.1 USA clone 14/7 prokMSA_id:42640 AJ245594.1 USA clone 8/1 2.43.5.9.1.1.9302 OTU 3 seqs prokMSA_id:9944 U80208.1 Pantoea stewartii subsp. stewartii prokMSA_id:9946 Z96080.1 Pantoea stewartii prokMSA_id:66728 AF373198.1 Pantoea subsp. stewartii str. GSPB 2626 2.43.5.9.1.1.9309 OTU 1 seq prokMSA_id:67659 AJ417833.1 Buchnera sp 2.43.5.9.1.1.9325 OTU 29 seqs prokMSA_id:10185 Z11926.1 symbiont of Bemisia tabaci (sweetpotato whitefly) prokMSA_id:17365 AF400472.1 Secondary endosymbiont Bemisia tabaci clone CALA of prokMSA_id:19360 AF293621.1 Uroleucon ambrosiae symbiont prokMSA_id:20242 AF400471.1 Secondary endosymbiont Bemisia tabaci clone AZB of prokMSA_id:24843 AF293626.1 Uroleucon rudbeckiae symbiont prokMSA_id:28464 AF400476.1 Secondary endosymbiont Bemisia tabaci clone JATPR of prokMSA_id:35772 AF293622.1 Uroleucon ambrosiae symbiont prokMSA_id:36537 AF400479.1 Secondary endosymbiont Bemisia tabaci clone TANZ3-1 of prokMSA_id:42775 AJ297720.1 applified whole aphid preparations clone prokMSA_id:43876 AF400475.1 Secondary endosymbiont Bemisia tabaci clone ISR5 of prokMSA_id:50332 AF400477.1 Secondary endosymbiont Bemisia tabaci clone MEX4 of prokMSA_id:50515 AF293616.1 Secondary symbiont type-T Acyrthosiphon pisum (rrs) clone 2BA type-T prokMSA_id:51366 AF400470.1 Secondary endosymbiont Bemisia tabaci clone AZA of prokMSA_id:51838 AF400473.1 Secondary endosymbiont Bemisia tabaci clone CULMX of prokMSA_id:83342 AY136163.1 Uroleucon pieloui symbiont prokMSA_id:83831 AY136136.1 Aphis craccivora symbiont prokMSA_id:83862 AY136162.1 Uroleucon nigrotuberculatum symbiont prokMSA_id:84832 AY136156.1 Pemphigus spyrothecae symbiont prokMSA_id:84895 AY136148.1 Macrosiphum euphorbiae symbiont prokMSA_id:84922 AY136141.1 Acyrthosiphon pisum symbiont prokMSA_id:85003 AY136161.1 Periphyllus bulgaricus symbiont prokMSA_id:85992 AY136164.1 Uroleucon reynoldense symbiont prokMSA_id:86586 AY136145.1 Cacopsylla pyri symbiont prokMSA_id:90074 AY264676.1 Bemisia tabaci symbiont prokMSA_id:101966 AY136166.1 Uroleucon rudbeckiae symbiont prokMSA_id:102686 AY462101.1 Aphis fabae (black bean aphid) symbiont prokMSA_id:108262 AY296733.1 Acyrthosiphon pisum symbiont prokMSA_id:110800 AY860530.1 Bemisia tabaci B biotype symbiont prokMSA_id:112701 AY907546.1 Acyrthosiphon pisum symbiont 2.43.5.9.1.1.9326 OTU 1 seq prokMSA_id:27646 AJ290038.1 Austria: Lake Gossenkoellesee clone GKS2-91 GKS2-91 2.43.5.9.1.1.9327 OTU 3 seqs prokMSA_id:10307 U80203.1 Brenneria nigrifluens str. ATCC 13028 prokMSA_id:10308 Z96095.1 Brenneria nigrifluens str. LMG 2694 prokMSA_id:45637 AJ233415.1 Brenneria nigrifluens str. DSM 30175 2.43.5.9.1.1.9337 OTU 1 seq prokMSA_id:10315 U90758.1 Rahnella genosp. 3 str. DSM 30078 2.43.5.9.1.1.9341 OTU 1 seq prokMSA_id:37741 AF214641.1 Nitrogen-fixing isolate str. CC262C 2.43.5.9.1.1.9345 OTU 6 seqs prokMSA_id:9834 AJ009930.1 Erwinia pyrifoliae str. Ep1/96 prokMSA_id:9835 Z96088.1 Erwinia amylovora str. LMG 2024 prokMSA_id:69975 AF141891.1 Erwinia amylovora str. BC199(=Ea528) prokMSA_id:101381 AF141892.1 Ea510) prokMSA_id:107437 AJ746201.1 Erwinia amylovora str. PD 2915 prokMSA_id:107580 AJ746202.1 Erwinia amylovora str. PD 103 2.43.5.9.1.1.9346 OTU 23 seqs prokMSA_id:10366 Z21939.1 Yersinia pseudotuberculosis prokMSA_id:10369 AJ232224.1 Yersinia pestis SS-Yp-09 prokMSA_id:10371 AJ232226.1 Yersinia pestis SS-Yp-102 prokMSA_id:10372 AJ232227.1 Yersinia pestis SS-Yp-103 prokMSA_id:10373 AJ232228.1 Yersinia pestis SS-Yp-104 prokMSA_id:10375 AJ232230.1 Yersinia pestis SS-Yp-106 prokMSA_id:10380 AJ232235.1 Yersinia pestis SS-Yp-113 prokMSA_id:10381 AJ232236.1 Yersinia pestis SS-Yp-114 prokMSA_id:10384 AJ232239.1 Yersinia pestis SS-Yp-117 prokMSA_id:10388 X75274.1 Yersinia pestis prokMSA_id:18014 AF366375.1 Yersinia pseudotuberculosis str. ATCC 29833 prokMSA_id:22202 AF365934.1 Yersinia pseudotuberculosis str. 2883 prokMSA_id:25758 AF365947.1 Yersinia pseudotuberculosis str. 151 prokMSA_id:30561 AF365943.1 Yersinia pseudotuberculosis str. 204 prokMSA_id:37543 AF365937.1 Yersinia pseudotuberculosis str. 49 prokMSA_id:42238 AF365941.1 Yersinia pseudotuberculosis str. 51 prokMSA_id:42764 AF365944.1 Yersinia pseudotuberculosis str. 197 prokMSA_id:46996 AF365949.1 Yersinia pseudotuberculosis str. 6088 prokMSA_id:52382 AF365942.1 Yersinia pseudotuberculosis str. 212 prokMSA_id:56451 AE013602.1 Yersinia pestis str. KIM prokMSA_id:57519 AJ414159.1 Yersinia pestis str. CO92 prokMSA_id:57521 AJ414141.1 Yersinia pestis str. CO92 prokMSA_id:63168 AE013985.1 Yersinia pestis str. KIM 2.43.5.9.1.1.9348 OTU 1 seq prokMSA_id:52626 AJ132995.1 Serratia marcescens 2.43.5.9.1.1.9358 OTU 59 seqs prokMSA_id:9659 U18997.1 Escherichia coli str. K-12 prokMSA_id:9660 Z83203.1 Hafnia alvei prokMSA_id:9662 X96965.1 Shigella boydii prokMSA_id:9668 U88548.1 Salmonella subsp. enterica serovar Paratyphi C subsp. prokMSA_id:9669 U88545.1 Salmonella typhi str. St111 prokMSA_id:9670 U92193.1 Salmonella enterica serovar Bovis-morbificans subsp. morbificans str. Sbm1 subsp. prokMSA_id:9672 X80722.1 Escherichia coli prokMSA_id:9673 M87049.1 Escherichia coli str. K-12 prokMSA_id:9676 X80731.1 Escherichia coli prokMSA_id:9678 X96963.1 Shigella flexneri prokMSA_id:9679 Z83204.1 Escherichia coli prokMSA_id:9680 X96964.1 Shigella sonnei prokMSA_id:9686 X96966.1 Shigella dysenteriae prokMSA_id:9691 X80727.1 Escherichia coli prokMSA_id:9692 X80729.1 Escherichia coli prokMSA_id:9693 X80732.1 Escherichia coli prokMSA_id:9696 X80723.1 Escherichia coli prokMSA_id:9698 X80726.1 Shigella sonnei prokMSA_id:9700 X80679.1 Shigella flexneri prokMSA_id:9701 V00348.1 Escherichia coli prokMSA_id:9702 L10328.1 Escherichia coli prokMSA_id:9704 X80724.1 Escherichia coli prokMSA_id:9706 U90314.1 Salmonella subsp. enterica serovar Blockley str. Sb1 subsp. prokMSA_id:9707 U90315.1 Salmonella subsp. enterica serovar Matopeni str. Sm1 subsp. prokMSA_id:9709 U88546.1 Salmonella paratyphi prokMSA_id:9710 U88547.1 Salmonella subsp. enterica serovar Paratyphi B subsp. prokMSA_id:9712 U92196.1 Salmonella subsp. enterica serovar Bareilly str. Sb1 subsp. prokMSA_id:9713 U92192.1 Salmonella subsp. enterica serovar Chingola str. Sch1 subsp. prokMSA_id:9714 U92195.1 Salmonella enterica subsp. houtenae serovar Houten str. Sh1 subsp. prokMSA_id:9715 U92194.1 Salmonella subsp. enterica serovar Waycross str. Swy1 subsp. prokMSA_id:9719 X80721.1 Escherichia coli prokMSA_id:9721 X80680.1 Shigella dysenteriae prokMSA_id:9741 X80725.1 Escherichia coli prokMSA_id:9751 AF025372.1 Citrobacter koseri prokMSA_id:9784 AB004755.1 Raoultella planticola str. JCM7251 prokMSA_id:9785 AF025366.1 Citrobacter koseri str. CDC 8132-86 prokMSA_id:24909 AE000406.1 Escherichia coli str. K12 prokMSA_id:28107 E05133.1 Escherichia coli prokMSA_id:43594 AF371931.1 phylotype OTU-1 swine intestine clone p-4395-4Wa2 prokMSA_id:46170 AF371849.1 phylotype OTU-1 swine intestine clone p-463-o3 prokMSA_id:55738 AJ487022.1 intestine Zophobas mori clone prokMSA_id:58360 NC_004337.1 Shigella flexneri 2a str. 301 prokMSA_id:64392 AF403733.1 Escherichia coli str. C2 prokMSA_id:65406 AF511430.1 Escherichia coli CCCO4 prokMSA_id:66566 AJ487021.1 intestine Zophobas mori clone prokMSA_id:68951 AB035924.1 Escherichia coli O157:H7 str. RIMD0509952 prokMSA_id:68952 AB035925.1 Escherichia coli O157:H7 str. RIMD0509952 prokMSA_id:68955 AB035921.1 Escherichia coli O157:H7 str. RIMD 0509952 prokMSA_id:68956 AB035920.1 Escherichia coli O157:H7 str. RIMD 0509952 prokMSA_id:75507 AE016769.1 Escherichia coli str. CFT073 prokMSA_id:76445 AE016767.1 Escherichia coli str. CFT073 prokMSA_id:82658 AE016990.1 Shigella flexneri 2a str. 2457T prokMSA_id:83034 AE016989.1 Shigella flexneri 2a str. 2457T prokMSA_id:83296 AE016978.1 Shigella flexneri 2a str. 2457T prokMSA_id:83655 AE016991.1 Shigella flexneri 2a str. 2457T prokMSA_id:84714 NC_004741.1 Shigella flexneri 2a str. 2457T prokMSA_id:84906 AE016987.1 Shigella flexneri 2a str. 2457T prokMSA_id:86213 AF499895.1 human colonic mucosal biopsy clone ABLCf4 prokMSA_id:111181 AY696668.1 Shigella boydii str. 5216-70 2.43.5.9.1.1.9361 OTU 4 seqs prokMSA_id:10048 AB004749.1 Enterobacter amnigenus str. JCM1237 prokMSA_id:10092 AB004747.1 Enterobacter intermedius str. JCM1238 prokMSA_id:26797 AJ318112.1 Waste-gas biofilter clone BIci26 prokMSA_id:91327 AY344378.1 Lake Kauhako 30 m clone K2-30-20 2.43.5.9.1.1.9363 OTU 5 seqs prokMSA_id:9840 AF025368.1 Citrobacter braakii str. CDC 080-58 prokMSA_id:9841 AF025365.1 Citrobacter freundii str. CDC 621-64 prokMSA_id:9845 AJ233408.1 Citrobacter freundii str. DSM 30039 prokMSA_id:25734 AF463533.1 Citrobacter sp. str. TSA-1 prokMSA_id:83212 AY259630.1 Citrobacter freundii str. WA1 2.43.5.9.1.1.9368 OTU 1 seq prokMSA_id:10115 AJ233424.1 Pragia fontium str. DSM 5563 2.43.5.9.1.1.9385 OTU 7 seqs prokMSA_id:33418 AF400481.1 Secondary endosymbiont Bemisia tabaci clone UG26 of prokMSA_id:85281 AY136153.1 Myzocallis sp. symbiont prokMSA_id:86038 AY136168.1 Wahlgreniella nervata symbiont prokMSA_id:88430 AY264673.1 Australiococcus greville symbiont prokMSA_id:88445 AY264663.1 Acanthaleyrodes styraci symbiont prokMSA_id:88455 AY264668.1 Neomaskellia andropogonis symbiont prokMSA_id:89143 AY264665.1 Aleuroplatus gelatinosus symbiont 2.43.5.9.1.1.9390 OTU 1 seq prokMSA_id:10042 Z96077.1 Enterobacter nimipressuralis str. LMG 10245-T 2.43.5.9.1.1.9391 OTU 1 seq prokMSA_id:49969 AF224829.1 clone Car39fc 2.43.5.9.1.1.9408 OTU 2 seqs prokMSA_id:85221 AY136167.1 Chaitophorus populeti symbiont prokMSA_id:86615 AY136143.1 Brachycaudus cardui symbiont 2.43.5.9.1.1.9417 OTU 6 seqs prokMSA_id:10169 AJ233429.1 Serratia fonticola str. DSM 4576 prokMSA_id:25598 AJ279052.1 Serratia quinivorans subsp. quinovora str. Ox1a prokMSA_id:33276 AJ279002.1 Serratia fonticola str. IB4 prokMSA_id:34707 AF286869.1 Serratia fonticola str. LMG 7882 prokMSA_id:82090 AY236502.1 Serratia fonticola UTAD54 prokMSA_id:101789 AY689057.1 Serratia sp. str. 9A_5 2.43.5.9.1.1.9420 OTU 1 seq prokMSA_id:39049 AJ245591.1 Trinidad and Tobago clone 4-2 2.43.5.9.1.1.9436 OTU 1 seq prokMSA_id:10343 AJ233407.1 Budvicia aquatica str. DSM 5075 2.43.5.9.1.1.9475 OTU 2 seqs prokMSA_id:10201 Z96097.1 Brenneria salicis str. LMG 2698 prokMSA_id:46931 AJ233419.1 Brenneria salicis str. DSM 30166 2.43.5.9.1.1.9496 OTU 1 seq prokMSA_id:51002 NC_000913.2 Escherichia coli K12 2.43.5.9.1.1.9502 OTU 2 seqs prokMSA_id:41267 AF293620.1 Uroleucon aenum symbiont prokMSA_id:112461 AY907547.1 Acyrthosiphon pisum symbiont 2.43.5.9.1.1.9504 OTU 1 seq prokMSA_id:23853 AJ296758.1 Buchnera aphidicola (Panaphis juglandis) 2.43.5.9.1.1.9527 OTU 1 seq prokMSA_id:34972 AJ296759.1 Buchnera aphidicola (Hoplocallis pictus) 2.43.5.9.1.1.9543 OTU 1 seq prokMSA_id:27576 AF286128.1 symbiont 2.43.5.9.1.1.9594 OTU 2 seqs prokMSA_id:77628 AB074622.1 pea aphid symbiont clone APe4_2 prokMSA_id:85645 AB089244.1 Morganella morganii str. ATCC35200 2.43.5.9.1.1.9600 OTU 1 seq prokMSA_id:10203 U91515.1 Candidatus Phlomobacter fragariae str. france fragariae 2.43.5.9.1.1.9601 OTU 1 seq prokMSA_id:41602 AJ296752.1 Buchnera aphidicola (Baizongia pistaciae) 2.43.5.9.1.1.9603 OTU 1 seq prokMSA_id:10204 U91786.1 Candidatus Arsenophonus triatominarum 2.43.5.9.1.1.9632 OTU 1 seq prokMSA_id:9732 AB022638.1 TK75 clone 2.43.5.9.1.1.9646 OTU 8 seqs prokMSA_id:9746 AB004746.1 Enterobacter sakazakii prokMSA_id:108214 AY803189.1 Enterobacter sakazakii ES Vo7/24922 prokMSA_id:108215 AY803191.1 Enterobacter sakazakii FSM 265 prokMSA_id:108217 AY803192.1 Enterobacter sakazakii 1084 prokMSA_id:108569 AY752936.1 Enterobacter sakazakii 858 prokMSA_id:108570 AY752938.1 Enterobacter sakazakii 954 prokMSA_id:108573 AY752942.1 Enterobacter sakazakii 468 prokMSA_id:108574 AY752943.1 Enterobacter sakazakii 236 2.43.5.9.1.1.9651 OTU 8 seqs prokMSA_id:9790 Z96090.1 Pectobacterium carotovorum prokMSA_id:66741 AF373182.1 Pectobacterium subsp. atrosepticum str. 9205 prokMSA_id:66743 AF373181.1 Pectobacterium subsp. atrosepticum str. 9204 prokMSA_id:66744 AF373180.1 Pectobacterium subsp. atrosepticum str. 9201 prokMSA_id:66745 AF373179.1 Pectobacterium subsp. atrosepticum str. 558 prokMSA_id:66746 AF373177.1 Pectobacterium subsp. atrosepticum str. 196 prokMSA_id:66747 AF373178.1 Pectobacterium subsp. atrosepticum str. 31 prokMSA_id:66749 AF373176.1 Pectobacterium subsp. atrosepticum str. GSPB 1710 2.43.5.9.1.2 sf_6 15 seqs 2.43.5.9.1.2.103 OTU 1 seq prokMSA_id:39216 AJ252689.1 Rhizosphere soil RSC-II-64 () clone RSC-II-64 2.43.5.9.1.2.110 OTU 1 seq prokMSA_id:33333 AF424504.1 Verrucomicrobia clone MERTZ_2CM_57 2.43.5.9.1.2.433 OTU 1 seq prokMSA_id:63314 AF523903.1 coal effluent wetland clone RCP2-6 2.43.5.9.1.2.554 OTU 1 seq prokMSA_id:1554 AF142902.1 clone EKHO-20 2.43.5.9.1.2.555 OTU 1 seq prokMSA_id:1556 U81738.2 anaerobic digestor clone vadinHA64 2.43.5.9.1.2.646 OTU 8 seqs prokMSA_id:17862 AB034150.1 rumen clone 2C28d-9 prokMSA_id:95381 AJ575736.1 lake water clone NE53 prokMSA_id:95864 AJ575738.1 lake water clone NE55 prokMSA_id:96571 AJ575735.1 lake water clone NE37 prokMSA_id:96658 AJ575737.1 lake water clone NE54 prokMSA_id:105129 AY695840.1 Opitutus sp. str. SA-9 prokMSA_id:111504 AF316720.1 Crater Lake clone CL120-10 prokMSA_id:111783 AY863090.1 wastewater treatment pool clone SXAU048 2.43.5.9.1.2.731 OTU 1 seq prokMSA_id:25549 AJ289985.1 lake bacterioplankton clone FukuN111 2.43.5.9.1.2.8783 OTU 1 seq prokMSA_id:9675 AF075271.2 Alterococcus agarolyticus 2.43.5.9.2 Unclassified 70 seqs 2.43.5.9.2.1 sf_1 70 seqs 2.43.5.9.2.1.8430 OTU 70 seqs prokMSA_id:9778 AF029227.1 Salmonella bongori prokMSA_id:9779 AF029226.1 Salmonella bongori str. JEO 4162 prokMSA_id:9808 AF130897.1 Pantoea agglomerans str. A18 prokMSA_id:9838 AJ233414.1 Erwinia mallotivora str. DSM 4565 prokMSA_id:9839 Z96085.1 Erwinia psidii str. LMG 7034 prokMSA_id:9854 AF130893.1 Pantoea endophytica str. A14 prokMSA_id:9865 Z96081.1 Pantoea ananatis str. LMG 2665 prokMSA_id:9869 U80196.1 Pantoea ananatis str. ATCC 33244 prokMSA_id:9873 AB004758.1 Pantoea ananatis str. JCM6986 prokMSA_id:9874 U80209.1 Pantoea ananatis str. ATCC 19321 prokMSA_id:9876 AF130891.1 Pantoea agglomerans str. A12 prokMSA_id:9879 AF130901.1 Pantoea agglomerans str. A23 prokMSA_id:9880 AF130904.1 Pantoea agglomerans str. A26 prokMSA_id:9883 AF130923.1 Pantoea agglomerans str. A53 prokMSA_id:9887 AF130932.1 Pantoea agglomerans str. A62 prokMSA_id:9888 AF130933.1 Pantoea agglomerans str. A63 prokMSA_id:9891 AF130939.1 Pantoea agglomerans str. A71 prokMSA_id:9897 AF130961.1 Pantoea agglomerans str. A9 prokMSA_id:9908 AF130884.1 Pantoea agglomerans str. A123 prokMSA_id:9909 AF130886.1 Pantoea agglomerans str. A126 prokMSA_id:9912 AF130898.1 Pantoea agglomerans str. A19 prokMSA_id:9913 AF130899.1 Pantoea agglomerans str. A21 prokMSA_id:9914 AF130905.1 Pantoea agglomerans str. A27 prokMSA_id:9918 AF130913.1 Pantoea agglomerans str. A41 prokMSA_id:9920 AF130917.1 Pantoea agglomerans str. A46 prokMSA_id:9921 AF130918.1 Pantoea agglomerans str. new*47con prokMSA_id:9924 AF130926.1 Pantoea agglomerans str. A56 prokMSA_id:9926 AF130929.1 Pantoea agglomerans str. A59 prokMSA_id:9927 AF130931.1 Pantoea agglomerans str. A61 prokMSA_id:9931 AF130940.1 Pantoea agglomerans str. A72 prokMSA_id:9933 AF130942.1 Pantoea agglomerans str. A74 prokMSA_id:9940 AB004759.1 symbiont prokMSA_id:9943 Z96083.1 Pantoea agglomerans str. LMG 2660 prokMSA_id:10066 AJ233437.1 Tatumella ptyseos str. DSM 5000 prokMSA_id:10078 AF130889.1 Pantoea endophytica str. A10 prokMSA_id:10080 AF130908.1 Pantoea endophytica str. A32 prokMSA_id:10097 AF130894.1 Pantoea agglomerans str. A15 prokMSA_id:10100 AF130956.1 Pantoea endophytica str. A3 prokMSA_id:10101 AF130957.1 Pantoea sp. str. A5 prokMSA_id:18430 AF364844.1 Pantoea ananatis str. LMG 20106 prokMSA_id:18836 AF229453.1 Pantoea sp. 'Cibuni isolate 74' Cibuni media 74 'Cibuni prokMSA_id:21990 AF364846.1 Pantoea ananatis str. LMG 20104 prokMSA_id:33792 AF348161.1 Enterobacter sp. str. IMD1260 prokMSA_id:47117 AF364845.1 Pantoea ananatis str. LMG 20105 prokMSA_id:51158 AF005656.1 complete isolate str. MS-1 prokMSA_id:51850 AF364847.1 Pantoea ananatis str. LMG 20103 prokMSA_id:67501 AY092079.1 Pantoea agglomerans str. 732 prokMSA_id:71227 AF130920.1 Pantoea agglomerans str. A49 prokMSA_id:97532 AY395010.1 Pantoea agglomerans NAB4 prokMSA_id:100027 AY616170.1 Pantoea agglomerans str. TN1 98.VII.1 prokMSA_id:101739 AY579210.1 Pantoea sp. str. BD 309 prokMSA_id:104438 AY530795.1 Pantoea ananatis str. BD 390 prokMSA_id:104588 AY530796.1 Pantoea ananatis str. PA 4 prokMSA_id:104990 AY616167.1 Pantoea agglomerans str. TG1 98.VII.1 prokMSA_id:106244 AY528223.1 Pantoea sp. str. BD 336 prokMSA_id:106255 AJ629190.1 Pantoea ananatis str. 0201935 prokMSA_id:107479 AY642383.1 Pantoea subsp. stewartii str. 0028 prokMSA_id:107499 AB114622.1 rice plant clone ER-51 prokMSA_id:107562 AY665975.1 Enterobacter sp. str. 230604/c prokMSA_id:108571 AY752939.1 Enterobacter sakazakii 759 prokMSA_id:108575 AY752940.1 Enterobacter sakazakii 33 prokMSA_id:109820 AY173020.1 Pantoea ananatis str. BCC0107 prokMSA_id:110464 AY173021.1 Pantoea ananatis str. BCC0105 prokMSA_id:110652 AY173023.1 Pantoea ananatis str. BCC0109 prokMSA_id:110880 AY173022.1 Pantoea ananatis str. BCC0160 prokMSA_id:111841 AY898643.1 Pantoea ananatis str. BD 442 prokMSA_id:112237 AY898642.1 Pantoea ananatis str. BD 435 prokMSA_id:112902 AY924376.1 Pantoea agglomerans str. Sc-4 prokMSA_id:113961 AY924375.1 Pantoea agglomerans str. Sc-2 prokMSA_id:114198 AY924374.1 Pantoea agglomerans str. Sc-1 2.43.6 Unclassified 73 seqs 2.43.6.1 Unclassified 73 seqs 2.43.6.1.1 Unclassified 73 seqs 2.43.6.1.1.1 sf_13 1 seq 2.43.6.1.1.1.232 OTU 1 seq prokMSA_id:33996 AF328201.1 clone KS63 2.43.6.1.1.10 sf_24 1 seq 2.43.6.1.1.10.10054 OTU 1 seq prokMSA_id:10405 AF142866.1 clone BURTON-48 2.43.6.1.1.11 sf_25 1 seq 2.43.6.1.1.11.10234 OTU 1 seq prokMSA_id:10549 AF050609.1 contaminated aquifer clone WCHA2-26 2.43.6.1.1.12 sf_26 4 seqs 2.43.6.1.1.12.9967 OTU 4 seqs prokMSA_id:74907 AY164373.1 hypersaline anoxic basin; brine interface Bannock Mediterranean Sea clone BLIB-36 prokMSA_id:75007 AY164431.1 hypersaline anoxic basin; brine interface Urania Mediterranean Sea clone ULIB-15 prokMSA_id:75635 AY164345.1 hypersaline anoxic basin; brine interface L'Atalante Mediterranean Sea clone ALIB-36 prokMSA_id:76564 AY164361.1 hypersaline anoxic basin; brine interface L'Atalante Mediterranean Sea clone ALIB-90 2.43.6.1.1.13 sf_27 1 seq 2.43.6.1.1.13.10255 OTU 1 seq prokMSA_id:44979 AF296205.1 2.43.6.1.1.14 sf_28 4 seqs 2.43.6.1.1.14.10091 OTU 4 seqs prokMSA_id:21892 AF408637.1 clone PCEDR694 prokMSA_id:24505 AF408638.1 clone PCEDR702 prokMSA_id:39862 AF408640.1 clone PCEDR691 prokMSA_id:51360 AF408639.1 clone PCEDR13 2.43.6.1.1.15 sf_29 1 seq 2.43.6.1.1.15.9838 OTU 1 seq prokMSA_id:10544 X97102.1 TM21 2.43.6.1.1.16 sf_3 1 seq 2.43.6.1.1.16.10567 OTU 1 seq prokMSA_id:10947 AF142802.1 clone ACE-27 2.43.6.1.1.17 sf_4 2 seqs 2.43.6.1.1.17.7936 OTU 2 seqs prokMSA_id:39233 Z88586.1 HRV10 prokMSA_id:44013 Z88592.2 HRV40 2.43.6.1.1.18 sf_7 3 seqs 2.43.6.1.1.18.10501 OTU 1 seq prokMSA_id:36811 AF468746.1 clone 33-PA19B00 2.43.6.1.1.18.10504 OTU 1 seq prokMSA_id:20884 AF468775.1 clone 33-FL98B00 2.43.6.1.1.18.10565 OTU 1 seq prokMSA_id:51546 AF468736.1 clone 33-PA46B00 2.43.6.1.1.19 sf_8 17 seqs 2.43.6.1.1.19.8247 OTU 1 seq prokMSA_id:54683 AF211149.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.8290 OTU 1 seq prokMSA_id:19432 AF286120.1 symbiont 2.43.6.1.1.19.8365 OTU 1 seq prokMSA_id:54086 AF211152.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.8470 OTU 1 seq prokMSA_id:53696 AF211137.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.8709 OTU 1 seq prokMSA_id:53577 AF243136.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.8841 OTU 1 seq prokMSA_id:52996 AF211144.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.8979 OTU 1 seq prokMSA_id:54580 AF211146.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.9004 OTU 1 seq prokMSA_id:8120 AB013086.1 symbiont 2.43.6.1.1.19.9012 OTU 2 seqs prokMSA_id:46529 AB038367.1 Diaphorina citri symbiont prokMSA_id:54539 AF211136.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.9176 OTU 1 seq prokMSA_id:54499 AF280097.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.9513 OTU 2 seqs prokMSA_id:22092 AF286119.1 symbiont prokMSA_id:68911 AF211126.2 Candidatus Carsonella ruddii 2.43.6.1.1.19.9535 OTU 1 seq prokMSA_id:54310 AF211130.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.9558 OTU 1 seq prokMSA_id:69260 AF211148.1 Candidatus Carsonella ruddii 2.43.6.1.1.19.9631 OTU 2 seqs prokMSA_id:54585 AF211123.1 Candidatus Carsonella ruddii prokMSA_id:68912 AF211124.2 Candidatus Carsonella ruddii 2.43.6.1.1.2 sf_14 3 seqs 2.43.6.1.1.2.1005 OTU 1 seq prokMSA_id:11284 X81188.1 magnetic coccus MP17 str. CS408 2.43.6.1.1.2.1008 OTU 1 seq prokMSA_id:11285 X81186.1 magnetic coccus MP17 str. CS105 2.43.6.1.1.2.936 OTU 1 seq prokMSA_id:11273 X61606.1 Magnetospirillum magnetotacticum str. Cs310 2.43.6.1.1.3 sf_15 1 seq 2.43.6.1.1.3.10615 OTU 1 seq prokMSA_id:10977 AF047623.1 Sulphur River Parker Cave Kentucky clone SRang2.3 2.43.6.1.1.4 sf_17 1 seq 2.43.6.1.1.4.7819 OTU 1 seq prokMSA_id:36586 Z93990.1 clone T92 2.43.6.1.1.5 sf_19 1 seq 2.43.6.1.1.5.9896 OTU 1 seq prokMSA_id:33719 AF424302.1 clone MERTZ_2CM_115 2.43.6.1.1.6 sf_20 27 seqs 2.43.6.1.1.6.10040 OTU 1 seq prokMSA_id:17883 AF422647.1 clone d038R 2.43.6.1.1.6.1009 OTU 1 seq prokMSA_id:11286 U15116.1 hydrothermal vent clone PVB_OTU_4 2.43.6.1.1.6.10101 OTU 1 seq prokMSA_id:10646 U15117.1 Hydrothermal vent PVB_OTU_10B complete clone PVB_46 2.43.6.1.1.6.10146 OTU 1 seq prokMSA_id:25981 AF424231.1 clone MERTZ_0CM_103 2.43.6.1.1.6.10336 OTU 1 seq prokMSA_id:47900 AF224796.1 clone Car7ra 2.43.6.1.1.6.2520 OTU 1 seq prokMSA_id:86373 AY226305.1 brine water Discovery Mediterranean Sea clone DBBB-60 2.43.6.1.1.6.338 OTU 1 seq prokMSA_id:27505 AB077357.1 deep-sea sediment clone TYM--20 2.43.6.1.1.6.507 OTU 1 seq prokMSA_id:18643 AJ309526.1 Red Sea bacterium KT-2K34 2.43.6.1.1.6.538 OTU 1 seq prokMSA_id:28900 AF424203.1 clone MERTZ_2CM_26 2.43.6.1.1.6.6654 OTU 1 seq prokMSA_id:42895 AY038548.1 clone CD4D3 2.43.6.1.1.6.6678 OTU 1 seq prokMSA_id:30286 AF469334.1 clone 33-FL82B98 2.43.6.1.1.6.6763 OTU 1 seq prokMSA_id:34081 AF194383.1 molecular isolate; collection July clone kpj28f 2.43.6.1.1.6.6911 OTU 1 seq prokMSA_id:38559 AF469325.1 clone 33-PA124B98 2.43.6.1.1.6.7104 OTU 1 seq prokMSA_id:54994 AF151298.1 marine -23S intergenic spacer region tRNA-Ile tRNA-Ala genes complete and 23S clone M7-400-3 2.43.6.1.1.6.7142 OTU 1 seq prokMSA_id:18749 AF469386.1 clone CTD40B 2.43.6.1.1.6.7365 OTU 1 seq prokMSA_id:39117 AF469343.1 clone CTD6B 2.43.6.1.1.6.7541 OTU 1 seq prokMSA_id:49399 AF469326.1 clone 33-PA19B98 2.43.6.1.1.6.8264 OTU 1 seq prokMSA_id:38771 AF195464.1 August collection clone kpa90rc 2.43.6.1.1.6.8382 OTU 1 seq prokMSA_id:48268 AF424285.1 clone MERTZ_0CM_244 2.43.6.1.1.6.8476 OTU 1 seq prokMSA_id:24053 AF333539.1 clone R58 2.43.6.1.1.6.8479 OTU 1 seq prokMSA_id:31275 AF424120.1 clone MERTZ_2CM_291 2.43.6.1.1.6.8545 OTU 1 seq prokMSA_id:47070 AF333530.1 clone R140 2.43.6.1.1.6.9046 OTU 1 seq prokMSA_id:8785 AF142897.1 clone EKHO-14 2.43.6.1.1.6.9100 OTU 1 seq prokMSA_id:18737 AF195477.1 September collection clone kps60rc 2.43.6.1.1.6.9555 OTU 1 seq prokMSA_id:42118 AB022635.1 TK12 clone 2.43.6.1.1.6.9618 OTU 1 seq prokMSA_id:8563 AF047617.1 Sulphur River Parker Cave Kentucky clone SRang1.28 2.43.6.1.1.6.9806 OTU 1 seq prokMSA_id:19377 AF424205.1 clone MERTZ_2CM_138 2.43.6.1.1.7 sf_21 1 seq 2.43.6.1.1.7.8509 OTU 1 seq prokMSA_id:84897 AY242721.1 soil clone Tc131-39 2.43.6.1.1.8 sf_22 2 seqs 2.43.6.1.1.8.10514 OTU 2 seqs prokMSA_id:21241 AY038524.1 clone CD4B3 prokMSA_id:23096 AY038436.1 clone CD5G4 2.43.6.1.1.9 sf_23 1 seq 2.43.6.1.1.9.10621 OTU 1 seq prokMSA_id:34281 AF468735.1 clone 33-PA3B00 2.44 SPAM 4 seqs 2.44.1 Unclassified 4 seqs 2.44.1.1 Unclassified 4 seqs 2.44.1.1.1 Unclassified 4 seqs 2.44.1.1.1.1 sf_1 4 seqs 2.44.1.1.1.1.458 OTU 2 seqs prokMSA_id:29377 AF234132.1 arid soil clone #0319-6G9 prokMSA_id:44346 AF234126.1 arid soil clone #0319-6A21 2.44.1.1.1.1.705 OTU 1 seq prokMSA_id:77042 AJ519639.1 uranium tailings soil clone Sh765B-AG-45 2.44.1.1.1.1.738 OTU 1 seq prokMSA_id:76626 AJ532725.1 uranium mining waste clone JG34-KF-252 2.45 Spirochaetes 722 seqs 2.45.1 SP/WWE1 5 seqs 2.45.1.1 Unclassified 5 seqs 2.45.1.1.1 Unclassified 5 seqs 2.45.1.1.1.1 sf_1 5 seqs 2.45.1.1.1.1.10070 OTU 2 seqs prokMSA_id:38013 AJ390485.1 soil clone PBS-18 prokMSA_id:66111 AB074941.1 spirochete clone:KB43 clone KB43 2.45.1.1.1.1.10343 OTU 3 seqs prokMSA_id:27966 AF338764.1 methanogenic reactor community clone C prokMSA_id:55346 AJ306787.1 DCP-dechlorinating consortium clone SHA-41 prokMSA_id:86261 AB092885.1 acetate-degrading methanogenic consortium clone ALU43 2.45.2 Spirochaetes 716 seqs 2.45.2.1 Spirochaetales 715 seqs 2.45.2.1.1 Leptospiraceae 58 seqs 2.45.2.1.1.1 sf_1 1 seq 2.45.2.1.1.1.411 OTU 1 seq prokMSA_id:32511 AF254398.1 4MB-degrading consortium clone UASB_TL14 2.45.2.1.1.2 sf_2 1 seq 2.45.2.1.1.2.125 OTU 1 seq prokMSA_id:1720 AJ009479.1 chlorobenzene-degrading consortium clone SJA-88 2.45.2.1.1.3 sf_3 54 seqs 2.45.2.1.1.3.6470 OTU 1 seq prokMSA_id:67836 AY082470.1 neutral pH mine biofilm clone 44a-B1-48 2.45.2.1.1.3.6480 OTU 5 seqs prokMSA_id:4335 Y19243.1 Leptospira fainei str. SSI 5402-98 prokMSA_id:4349 U60594.1 Leptospira fainei str. Hurstbridge prokMSA_id:102755 AY631885.1 Leptospira fainei serovar Hurstbridge str. BUT 6 prokMSA_id:108827 AY796065.1 Leptospira sp. 5399 prokMSA_id:108828 AY792329.1 Leptospira sp. str. L065 2.45.2.1.1.3.6496 OTU 21 seqs prokMSA_id:4305 Z21649.1 Leptospira santarosai prokMSA_id:4306 U12670.1 Leptospira borgpetersenii prokMSA_id:4307 U12673.1 Leptospira weilii prokMSA_id:4310 Z12817.1 Leptospira interrogans prokMSA_id:4333 X17547.1 Leptospira borgpetersenii prokMSA_id:4342 U12677.1 Leptospira weilii prokMSA_id:4343 Z21637.1 Leptospira weilii (P.) prokMSA_id:4344 Z21648.1 Leptospira meyeri prokMSA_id:4348 Z21630.1 Leptospira borgpetersenii prokMSA_id:4351 U12676.1 Leptospira weilii prokMSA_id:4357 U12671.1 Leptospira noguchii prokMSA_id:4359 Z21628.1 Leptospira kirschneri prokMSA_id:58028 AE011471.1 Leptospira interrogans serovar Lai str. 56601 serovar prokMSA_id:58029 AE011412.1 Leptospira interrogans serovar Lai str. 56601 serovar prokMSA_id:58052 NC_004342.1 Leptospira interrogans serovar Lai str. 56601 prokMSA_id:65605 AY034037.1 Leptospira weilii str. Ecochallenge prokMSA_id:102132 AY631881.1 Leptospira genomosp. 1 serovar Sichuan str. 79601 prokMSA_id:106230 AE017291.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 prokMSA_id:106551 AE017293.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 prokMSA_id:107567 AY631894.1 Leptospira interrogans serovar Icterohaemorrhagiae str. RGA prokMSA_id:108058 NC_005823.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 2.45.2.1.1.3.6512 OTU 3 seqs prokMSA_id:4311 U12669.1 Leptospira borgpetersenii prokMSA_id:4346 Z21634.1 Leptospira inadai prokMSA_id:4347 Z21635.1 Leptospira noguchii 2.45.2.1.1.3.6518 OTU 1 seq prokMSA_id:4354 U12672.1 Leptospira santarosai 2.45.2.1.1.3.6616 OTU 23 seqs prokMSA_id:4361 M88721.1 Leptospira species prokMSA_id:4370 Z21629.1 Ancona ancona prokMSA_id:4372 Z26969.1 Leptospira biflexa prokMSA_id:4373 Z98589.1 Leptospira biflexa subsp. Tororo str. mutant 1/1993 prokMSA_id:4374 Z98592.1 Leptospira biflexa subsp. Tororo str. mutant 2/1993 prokMSA_id:4375 Z98593.1 Leptospira biflexa subsp. Tororo str. mutant 2/1994 prokMSA_id:4376 Z98587.1 Leptospira biflexa subsp. Tororo str. mutant 3/1993 prokMSA_id:4377 Z98588.1 Leptospira biflexa subsp. Tororo str. mutant 3/1994 prokMSA_id:4378 Z98590.1 Leptospira biflexa subsp. Tororo str. mutant 6/1993 prokMSA_id:4379 Z98591.1 Leptospira biflexa subsp. Tororo str. mutant 6/1994 prokMSA_id:4380 Z26970.1 Leptospira biflexa prokMSA_id:4381 Z21633.1 "Jequitaia jequitaia" prokMSA_id:4382 Z21631.1 "Canela canela" prokMSA_id:4383 Z12821.1 Leptospira biflexa prokMSA_id:4384 Z21638.1 Leptospira wolbachii prokMSA_id:32731 AF167353.1 Leptospira meyeri str. Veldrat Semarang 173 prokMSA_id:102275 AY631882.1 Leptospira genomosp. 5 serovar Saopaulo str. Sao Paulo prokMSA_id:103193 AY631888.1 Leptospira genomosp. 4 serovar Hualin str. LT11-33 prokMSA_id:106728 AY631876.1 Leptospira biflexa serovar str. Patoc I prokMSA_id:107191 AY631879.1 Leptospira wolbachii serovar Codice str. CDC prokMSA_id:107278 AY631892.1 Leptospira meyeri serovar str. Veldrat Samarang prokMSA_id:107424 AY631893.1 Leptospira biflexa serovar Andamana str. CH 11 prokMSA_id:109683 AY631890.2 Leptospira wolbachii serovar str. Wa Gent 2.45.2.1.1.4 sf_4 2 seqs 2.45.2.1.1.4.6539 OTU 2 seqs prokMSA_id:4386 M88719.1 Leptonema illini prokMSA_id:4396 Z21632.1 Leptonema illini 2.45.2.1.2 Serpulinaceae 136 seqs 2.45.2.1.2.1 sf_1 136 seqs 2.45.2.1.2.1.6548 OTU 136 seqs prokMSA_id:3750 U23033.1 Swine intestinal spirochete prokMSA_id:3751 U14934.1 Serpulina innocens prokMSA_id:3752 U23035.1 Serpulina hyodysenteriae prokMSA_id:3753 U14915.1 Serpulina innocens prokMSA_id:3754 U23029.1 Swine intestinal spirochete prokMSA_id:3755 U14925.1 Serpulina innocens prokMSA_id:3756 U14931.1 Serpulina hyodysenteriae prokMSA_id:3757 U23031.1 Human intestinal spirochete prokMSA_id:3758 U14919.1 Serpulina innocens prokMSA_id:3760 U14922.1 Serpulina innocens prokMSA_id:3761 U14927.1 Serpulina innocens prokMSA_id:3762 M57741.1 Serpulina hyodysenteriae prokMSA_id:3763 U14928.1 Serpulina innocens prokMSA_id:3768 U14930.1 Serpulina hyodysenteriae prokMSA_id:3769 U23032.1 Swine intestinal spirochete prokMSA_id:3770 U14920.1 Serpulina innocens prokMSA_id:3771 U22838.1 Swine intestinal spirochete prokMSA_id:3772 U14926.1 Serpulina innocens prokMSA_id:3774 U23034.1 Human intestinal spirochete prokMSA_id:3776 U14921.1 Serpulina innocens prokMSA_id:3777 Z22781.1 Brachyspira aalborgi prokMSA_id:3779 U14916.1 Serpulina innocens prokMSA_id:3781 U14918.1 Serpulina innocens prokMSA_id:3782 U14924.1 Serpulina innocens prokMSA_id:3783 U14933.1 Serpulina innocens prokMSA_id:3784 U14935.1 Serpulina innocens prokMSA_id:3785 U23036.1 Serpulina hyodysenteriae prokMSA_id:3786 U14929.1 Serpulina innocens prokMSA_id:3788 U14932.1 Serpulina hyodysenteriae prokMSA_id:3789 AF172986.1 Brachyspira hyodysenteriae str. A4974 prokMSA_id:3791 U14923.1 Serpulina innocens prokMSA_id:3792 U14917.1 Serpulina innocens prokMSA_id:16876 AF228806.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHca09 adhucomuHca09 prokMSA_id:18811 AF228808.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHca25 adhucomuHca25 prokMSA_id:25199 AF228814.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHcc35 adhucomuHcc35 prokMSA_id:25279 AF200693.1 Brachyspira aalborgi str. W1 prokMSA_id:25827 AF228807.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHca20 adhucomuHca20 prokMSA_id:26030 AF228821.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuTvb40 adhucomuTvb40 prokMSA_id:27259 AF245121.1 Brachyspira sp. Cb104:95 prokMSA_id:28079 AF245120.1 Brachyspira sp. A3077 prokMSA_id:30878 AF228811.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHca76 adhucomuHca76 prokMSA_id:32489 AF228816.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHcc39 adhucomuHcc39 prokMSA_id:32828 AF245122.1 Brachyspira sp. AN883:98 prokMSA_id:37834 AF228812.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHcc07 adhucomuHcc07 prokMSA_id:39956 AF228820.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuTvb21 adhucomuTvb21 prokMSA_id:42611 AF228818.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuTva35 adhucomuTva35 prokMSA_id:43373 AF228819.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuTvb03 adhucomuTvb03 prokMSA_id:47721 AF228817.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuTva17 adhucomuTva17 prokMSA_id:47728 AF228809.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHca41 adhucomuHca41 prokMSA_id:47881 AF228813.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuHcc33 adhucomuHcc33 prokMSA_id:49210 AF228822.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone adhucomuTvb72 adhucomuTvb72 prokMSA_id:49836 AF245123.1 Brachyspira sp. AN2608:97 prokMSA_id:72200 AF395882.1 Brachyspira aalborgi str. AL prokMSA_id:72651 AF395883.1 Brachyspira aalborgi str. JLL prokMSA_id:75479 AY155458.1 Brachyspira pilosicoli str. ATCC 51139; Smarlab 2300042 prokMSA_id:77935 AB079583.1 Brachyspira ibaraki str. HIS24/11/99 prokMSA_id:82516 AY187057.1 Brachyspira pilosicoli str. OmanN26 prokMSA_id:82667 AB093312.1 Brachyspira innocens D2A/8/31 prokMSA_id:82681 AB093308.1 Brachyspira innocens D9D/6/15 prokMSA_id:82925 AB093326.1 Brachyspira innocens D4A/11/9 prokMSA_id:83009 AB093325.1 Brachyspira innocens D3A/11/9 prokMSA_id:83195 AB093311.1 Brachyspira innocens D1A/8/31 prokMSA_id:83206 AB092972.1 Brachyspira innocens D5A/11/9 prokMSA_id:83297 AB093309.1 Brachyspira innocens D10A/6/15 prokMSA_id:83588 AB092970.1 Brachyspira innocens D4D/6/15 prokMSA_id:83600 AB093310.1 Brachyspira innocens D12A/6/15 prokMSA_id:83734 AB093314.1 Brachyspira innocens D1A/10/5 prokMSA_id:83843 AB093307.1 Brachyspira innocens D7D/6/15 prokMSA_id:83872 AB094042.1 Brachyspira innocens D10A/6/15 prokMSA_id:84014 AB093319.1 Brachyspira innocens D4B/10/25 prokMSA_id:84017 AB093305.1 Brachyspira innocens D3D/6/15 prokMSA_id:84263 AB093304.1 Brachyspira innocens D2A/6/15 prokMSA_id:84303 AB093316.1 Brachyspira innocens D1A/10/25 prokMSA_id:84658 AB093315.1 Brachyspira innocens D2A/10/5 prokMSA_id:84667 AB093323.1 Brachyspira innocens D1A/11/9 prokMSA_id:84740 AB093318.1 Brachyspira innocens D3B/10/25 prokMSA_id:84797 AB093313.1 Brachyspira innocens D3A/8/31 prokMSA_id:84927 AB093321.1 Brachyspira innocens D7A/10/25 prokMSA_id:85039 AB093306.1 Brachyspira innocens D5D/6/15 prokMSA_id:85067 AB093320.1 Brachyspira innocens D6B/10/25 prokMSA_id:85297 AB092973.1 Brachyspira innocens D6B/6/15 prokMSA_id:85671 AB093324.1 Brachyspira innocens D2A/11/9 prokMSA_id:86423 AB092969.1 Brachyspira innocens D1D/6/15 prokMSA_id:86499 AB094043.1 Brachyspira innocens D12A/6/15 prokMSA_id:86505 AB093322.1 Brachyspira innocens D9D/10/25 prokMSA_id:86660 AB093317.1 Brachyspira innocens D2A/10/25 prokMSA_id:88315 AY312848.1 Brachyspira canis str. 2657:01 prokMSA_id:88867 AY312492.1 Brachyspira murdochii str. 56-150 prokMSA_id:89273 AY312849.1 Brachyspira canis str. 4752:01 prokMSA_id:90173 AY312846.1 Brachyspira canis str. 5288:01 prokMSA_id:90613 AY312847.1 Brachyspira canis str. 5358:01 prokMSA_id:92045 AY352283.1 Brachyspira sp. str. 3599/02 prokMSA_id:92098 AY352286.1 Brachyspira sp. str. 3902/02 prokMSA_id:92107 AY352287.1 Brachyspira hyodysenteriae str. 3907/02 prokMSA_id:92196 AY352291.1 Brachyspira hyodysenteriae str. 383:2/00 prokMSA_id:92217 AY349933.1 Brachyspira sp. str. 4578/01 prokMSA_id:92253 AY349938.1 Brachyspira canis str. 5304/01 prokMSA_id:92258 AY349935.1 Brachyspira sp. str. 1788/01 prokMSA_id:92268 AY352284.1 Brachyspira sp. str. 3624/02 prokMSA_id:92273 AY349936.1 Brachyspira canis str. A2 (T) prokMSA_id:92278 AY352288.1 Brachyspira sp. str. 3930/02 prokMSA_id:92292 AY352290.1 Brachyspira sp. str. 3949/02 prokMSA_id:92338 AY349948.1 Brachyspira sp. str. W2f prokMSA_id:92341 AY349939.1 Brachyspira canis str. 5467/01 prokMSA_id:92347 AY349949.1 Brachyspira aalborgi str. W3b prokMSA_id:92356 AY352282.1 Brachyspira sp. str. 1418/01 prokMSA_id:92367 AY349944.1 Brachyspira pilosicoli str. Dog 17 prokMSA_id:92440 AY349943.1 Brachyspira pilosicoli str. 24072-93a prokMSA_id:92446 AY349942.1 Brachyspira canis str. H98-13 prokMSA_id:92499 AY349937.1 Brachyspira canis str. 4771/01 prokMSA_id:92560 AY349947.1 Brachyspira aalborgi str. W2b prokMSA_id:92698 AY349945.1 Brachyspira pilosicoli str. CN 140 prokMSA_id:92728 AY352289.1 Brachyspira sp. str. 3931/02 prokMSA_id:92748 AY349946.1 Brachyspira pilosicoli str. H98-5 prokMSA_id:92885 AY352281.1 Brachyspira hyodysenteriae str. 1409/01 prokMSA_id:92933 AY349940.1 Brachyspira canis str. CN 6 prokMSA_id:92968 AY352285.1 Brachyspira sp. str. 3886/02 prokMSA_id:93018 AY349941.1 Brachyspira canis str. CN 129 prokMSA_id:93115 AY349934.1 Brachyspira sp. str. CN 2 prokMSA_id:100441 AB120010.1 Brachyspira aalborgi str. HISM16/5/02 prokMSA_id:100592 AB120011.1 Brachyspira aalborgi str. HISM17/5/02 prokMSA_id:100743 AB120012.1 Brachyspira aalborgi str. HISM18/5/02 prokMSA_id:100902 AB120013.1 Brachyspira aalborgi str. HISM19/5/02 prokMSA_id:101061 AB120014.1 Brachyspira aalborgi str. HISM20/5/02 prokMSA_id:101378 AB120016.1 Brachyspira aalborgi str. HISM22/5/02 prokMSA_id:101550 AB120017.1 Brachyspira aalborgi str. HISM23/5/02 prokMSA_id:101729 AB120018.1 Brachyspira aalborgi str. HISM24/5/02 prokMSA_id:101798 AF228815.1 Brachyspira aalborgi-like intestinal mucosa healthy Swedish 60-year old person clone prokMSA_id:101886 AB120019.1 Brachyspira aalborgi str. HISM25/5/02 prokMSA_id:105243 AB120006.1 Brachyspira pilosicoli str. CD1S prokMSA_id:105392 AB120007.1 Brachyspira pilosicoli str. CD2S prokMSA_id:105502 AB120020.1 Brachyspira aalborgi str. HISM26/5/02 prokMSA_id:105556 AB120008.1 Brachyspira pilosicoli str. CF8 prokMSA_id:105648 AB120021.1 Brachyspira aalborgi str. HISM27/5/02 prokMSA_id:105805 AB120022.1 Brachyspira aalborgi str. HISM28/5/02 prokMSA_id:105953 AB120023.1 Brachyspira aalborgi str. HISM29/5/02 2.45.2.1.3 Spirochaetaceae 521 seqs 2.45.2.1.3.1 sf_1 301 seqs 2.45.2.1.3.1.6458 OTU 1 seq prokMSA_id:73922 AB084961.1 termite gut clone NkS34 2.45.2.1.3.1.6459 OTU 1 seq prokMSA_id:79117 AJ431240.1 Spirochaeta sp. str. BHI80-158 2.45.2.1.3.1.6460 OTU 1 seq prokMSA_id:77997 AB088907.1 termite gut homogenate clone Rs-B69 sp. 2.45.2.1.3.1.6461 OTU 1 seq prokMSA_id:78244 AB088899.1 termite gut homogenate clone Rs-J54 sp. 2.45.2.1.3.1.6463 OTU 1 seq prokMSA_id:78179 AB088901.1 termite gut homogenate clone Rs-C91 sp. 2.45.2.1.3.1.6464 OTU 1 seq prokMSA_id:38610 AJ419823.1 Spirochaeta sp 2.45.2.1.3.1.6465 OTU 1 seq prokMSA_id:52112 AF357917.2 Spirochaeta sp. str. Grapes 2.45.2.1.3.1.6466 OTU 1 seq prokMSA_id:81100 AY214182.1 benzene-contaminated groundwater clone ZZ12C6 2.45.2.1.3.1.6467 OTU 1 seq prokMSA_id:3801 X97096.1 peat bog clone TM3 2.45.2.1.3.1.6468 OTU 1 seq prokMSA_id:3802 X93928.1 Spirochaeta africana 2.45.2.1.3.1.6469 OTU 1 seq prokMSA_id:3807 X93926.1 Spirochaeta asiatica 2.45.2.1.3.1.6471 OTU 1 seq prokMSA_id:4098 AF068416.1 termite gut homogenate clone RFS52 2.45.2.1.3.1.6472 OTU 1 seq prokMSA_id:59907 AY133086.1 TCE-contaminated site clone ccslm2126 2.45.2.1.3.1.6473 OTU 1 seq prokMSA_id:77621 AB088891.1 termite gut homogenate clone Rs-B29 sp. 2.45.2.1.3.1.6474 OTU 1 seq prokMSA_id:3906 AF023029.1 Treponema sp. str. III:13:D94 2.45.2.1.3.1.6475 OTU 2 seqs prokMSA_id:3964 M88726.1 Treponema pallidum prokMSA_id:40086 AF426102.1 Treponema pallidum subsp. pertenue str. Gauthier subsp. 2.45.2.1.3.1.6476 OTU 1 seq prokMSA_id:74426 AB084965.1 termite gut clone NkS50 2.45.2.1.3.1.6477 OTU 1 seq prokMSA_id:83413 AJ458945.1 Mixotricha paradoxa is flagellate hindgut Mastotermes darwiniensis clone mp3 of 2.45.2.1.3.1.6478 OTU 2 seqs prokMSA_id:3804 X93927.1 Spirochaeta alkalica prokMSA_id:38562 AF373921.1 Spirochaeta americana str. ASpG1 ATCC BAA-392 DSM 14872 2.45.2.1.3.1.6479 OTU 1 seq prokMSA_id:3927 Y08893.1 Treponema sp 2.45.2.1.3.1.6481 OTU 1 seq prokMSA_id:78281 AB088902.1 termite gut homogenate clone Rs-C15 sp. 2.45.2.1.3.1.6482 OTU 2 seqs prokMSA_id:17526 AF424377.1 Spirochaeta sp. clone MERTZ_21CM_149 prokMSA_id:59817 AY133371.1 coastal Antarctic sediment clone OB3_185 2.45.2.1.3.1.6483 OTU 2 seqs prokMSA_id:17711 AB045738.1 fiber rumen clone AAB2 prokMSA_id:39089 AB056638.1 fiber rumen clone AAB22 2.45.2.1.3.1.6484 OTU 4 seqs prokMSA_id:3852 Y09959.1 Treponema amylovorum HA2P prokMSA_id:3855 AF023045.1 Treponema sp. str. V:20:D62 prokMSA_id:3856 AF023046.1 Treponema sp. str. V::U7A prokMSA_id:3859 AF182834.1 Treponema sp. str. 5:C:AT040 2.45.2.1.3.1.6485 OTU 1 seq prokMSA_id:4125 AF068419.1 termite gut homogenate clone RFS64 2.45.2.1.3.1.6486 OTU 1 seq prokMSA_id:4126 AF068424.1 termite gut homogenate clone RFS99 2.45.2.1.3.1.6487 OTU 1 seq prokMSA_id:78105 AB088866.1 termite gut homogenate clone Rs-D52 sp. 2.45.2.1.3.1.6488 OTU 59 seqs prokMSA_id:4009 AF093251.1 Treponema primitia str. ZAS-1 prokMSA_id:4084 AF068337.1 termite gut homogenate clone RFS25 prokMSA_id:4085 AF068338.1 termite gut homogenate clone RFS21 prokMSA_id:4086 AF068340.1 termite gut homogenate clone RFS3 prokMSA_id:4087 AF068341.1 termite gut homogenate clone RFS41 prokMSA_id:4088 AF068343.1 termite gut homogenate clone RFS8 prokMSA_id:4099 AF068420.1 termite gut homogenate clone RFS7 prokMSA_id:4100 AF068421.1 termite gut homogenate clone RFS75 prokMSA_id:4101 AF068427.1 termite gut homogenate clone RFS82 prokMSA_id:4114 AF093252.1 Treponema primitia str. ZAS-2 prokMSA_id:4116 AF068336.1 termite gut homogenate clone RFS15 prokMSA_id:24078 AB032007.1 protist termite clone HsPySp4 clone prokMSA_id:29732 AB032006.1 Treponema clone RsDiSp8 prokMSA_id:32372 AB032008.1 protist termite clone HsDiSp320 clone prokMSA_id:44741 AJ419820.1 Spirochaeta sp prokMSA_id:44787 AJ419818.1 Spirochaeta sp prokMSA_id:46398 AB062834.1 termite gut clone BCf6-24 prokMSA_id:69074 AB084952.1 termite gut clone NkS1 prokMSA_id:69104 AB084960.1 termite gut clone NkS21 prokMSA_id:69148 AB084967.1 termite gut clone NkS56 prokMSA_id:69426 AB084958.1 termite gut clone NkS15 prokMSA_id:69563 AB085165.1 termite gut clone NkS-Oxy8 prokMSA_id:69619 AB085167.1 termite gut clone NkS-Oxy26 prokMSA_id:70117 AB085163.1 termite gut clone NkS-Oxy1 prokMSA_id:70817 AB084969.1 termite gut clone NkS85 prokMSA_id:70909 AB085164.1 termite gut clone NkS-Oxy3 prokMSA_id:71442 AB084971.1 termite gut clone NkS94 prokMSA_id:71676 AB084966.1 termite gut clone NkS53 prokMSA_id:71891 AB084962.1 termite gut clone NkS37 prokMSA_id:72131 AB084964.1 termite gut clone NkS49 prokMSA_id:73490 AB084973.1 termite gut clone NkS97 prokMSA_id:73924 AB084956.1 termite gut clone NkS8 prokMSA_id:74331 AB084954.1 termite gut clone NkS5 prokMSA_id:74527 AB084972.1 termite gut clone NkS95 prokMSA_id:77582 AB088874.1 termite gut homogenate clone Rs-D40 sp. prokMSA_id:77591 AB088900.1 termite gut homogenate clone Rs-Q78 sp. prokMSA_id:77600 AB088882.2 termite gut homogenate clone Rs-P25 sp. prokMSA_id:77606 AB088869.1 termite gut homogenate clone Rs-C35 sp. prokMSA_id:77632 AB088906.1 termite gut homogenate clone Rs-C32 sp. prokMSA_id:77647 AB088914.1 termite gut homogenate clone Rs-P59 sp. prokMSA_id:77677 AB088893.2 termite gut homogenate clone Rs-E18 sp. prokMSA_id:77686 AB088886.1 termite gut homogenate clone Rs-D47 sp. prokMSA_id:77700 AB088892.2 termite gut homogenate clone Rs-A16 sp. prokMSA_id:77759 AB088861.2 termite gut homogenate clone Rs-H62 sp. prokMSA_id:77775 AB088864.1 termite gut homogenate clone Rs-E15 sp. prokMSA_id:77778 AB088879.1 termite gut homogenate clone Rs-A77 sp. prokMSA_id:77811 AB088870.1 termite gut homogenate clone Rs-D01 sp. prokMSA_id:77877 AB088905.1 termite gut homogenate clone Rs-A09 sp. prokMSA_id:77905 AB088878.1 termite gut homogenate clone Rs-E03 sp. prokMSA_id:77953 AB088880.1 termite gut homogenate clone Rs-B10 sp. prokMSA_id:77980 AB088871.1 termite gut homogenate clone Rs-E37 sp. prokMSA_id:78076 AB088857.1 termite gut homogenate clone Rs-D73 sp. prokMSA_id:78092 AB088908.1 termite gut homogenate clone Rs-D13 sp. prokMSA_id:78117 AB088876.1 termite gut homogenate clone Rs-F60 sp. prokMSA_id:78272 AB088867.1 termite gut homogenate clone Rs-D96 sp. prokMSA_id:78296 AB088913.1 termite gut homogenate clone Rs-J93 sp. prokMSA_id:78381 AB088887.1 termite gut homogenate clone Rs-D53 sp. prokMSA_id:112977 AB189699.1 termite gut homogenate clone Tc-69 prokMSA_id:113740 AB189682.1 termite gut homogenate clone Tc-24 2.45.2.1.3.1.6489 OTU 1 seq prokMSA_id:83652 AJ458944.1 Mixotricha paradoxa is flagellate hindgut Mastotermes darwiniensis clone mp1 of 2.45.2.1.3.1.6490 OTU 1 seq prokMSA_id:48891 AB062823.1 termite gut homogenate clone BCf4-14 2.45.2.1.3.1.6491 OTU 5 seqs prokMSA_id:17555 AB062843.1 termite gut homogenate clone BCf9-08 prokMSA_id:25068 AB062825.1 termite gut homogenate clone BCf5-01 prokMSA_id:36150 AB062808.1 termite gut homogenate clone BCf11-05 prokMSA_id:38586 AB062840.1 termite gut homogenate clone BCf8-03 prokMSA_id:78047 AB088881.1 termite gut homogenate clone Rs-D57 sp. 2.45.2.1.3.1.6492 OTU 6 seqs prokMSA_id:3862 AF068335.1 termite gut homogenate clone RFS12 prokMSA_id:26242 AB031998.1 protist termite clone RsDiSp12 clone prokMSA_id:36987 AB032000.1 protist termite clone HsPySp16 clone prokMSA_id:37517 AB031999.1 protist termite clone HsPySp15 clone prokMSA_id:47422 AB031997.1 protist termite clone RsDiSp1 clone prokMSA_id:78106 AB088860.1 termite gut homogenate clone Rs-E01 sp. 2.45.2.1.3.1.6494 OTU 1 seq prokMSA_id:78058 AB088890.1 termite gut homogenate clone Rs-C47 sp. 2.45.2.1.3.1.6495 OTU 1 seq prokMSA_id:4062 AB015817.1 Spirochaeta sp 2.45.2.1.3.1.6497 OTU 1 seq prokMSA_id:4063 AB015818.1 Spirochaeta sp 2.45.2.1.3.1.6498 OTU 1 seq prokMSA_id:4065 AB015821.1 Spirochaeta sp 2.45.2.1.3.1.6499 OTU 1 seq prokMSA_id:4139 AB015805.1 Spirochaeta sp 2.45.2.1.3.1.6500 OTU 1 seq prokMSA_id:4067 AB015829.1 Spirochaeta sp 2.45.2.1.3.1.6501 OTU 1 seq prokMSA_id:4068 AB015831.1 Spirochaeta sp 2.45.2.1.3.1.6502 OTU 8 seqs prokMSA_id:3898 AF139203.1 Treponema denticola str. ATCC35405 prokMSA_id:3899 AF139204.1 Treponema denticola str. ATCC35404 prokMSA_id:3911 AF023034.1 Treponema sp. str. II:11:C3 prokMSA_id:3912 AF023035.1 Treponema sp. str. II:11:C57 prokMSA_id:3915 D85438.1 Treponema denticola str. ATCC33520 prokMSA_id:64388 AY119692.1 Treponema denticola str. GM-1 prokMSA_id:85243 AJ543428.1 Treponema putidum str. ATCC 700334 OMZ 758 prokMSA_id:86665 AY207055.1 human mouth clone P2PB_53 2.45.2.1.3.1.6503 OTU 6 seqs prokMSA_id:36866 AF349763.2 reductive DCE-dehalogenating enrichment clone DCE33 prokMSA_id:66166 AJ488100.1 chlorobenzene-degrading consortium clone IIIB-9 prokMSA_id:74347 AJ249227.1 DCE dechlorinating consortium clone DCE25 prokMSA_id:106177 AY667253.1 TCE-dechlorinating groundwater clone TANB18 prokMSA_id:108428 AY570571.1 -temperature biodegraded Canadian oil reservoir clone PL-38B6 prokMSA_id:108475 AY570600.1 -temperature biodegraded Canadian oil reservoir clone PL-16B9 2.45.2.1.3.1.6504 OTU 1 seq prokMSA_id:4069 AB015832.1 Spirochaeta sp 2.45.2.1.3.1.6505 OTU 9 seqs prokMSA_id:3907 AF023030.1 Treponema sp. str. II:10:D12 prokMSA_id:3908 AF023031.1 Treponema sp. str. II:C:T1 prokMSA_id:3909 AF023032.1 Treponema sp. str. II:D:G93 prokMSA_id:3910 AF023033.1 Treponema sp. II:11:U61 str. II:E:U61 prokMSA_id:3913 AF023036.1 Treponema sp. str. II:H:D11 prokMSA_id:3914 AF023037.1 Treponema sp. str. II:I:C53 prokMSA_id:3916 L78125.1 Unknown prokMSA_id:3919 AF109070.1 isolate R. Walker; spirochete species with papillomatous digital dermatitis clone 5 prokMSA_id:36733 AF363634.1 Treponema sp. str. G179 2.45.2.1.3.1.6506 OTU 3 seqs prokMSA_id:78119 AB088885.1 termite gut homogenate clone Rs-G28 sp. prokMSA_id:78155 AB088872.1 termite gut homogenate clone Rs-H84 sp. prokMSA_id:78206 AB088911.1 termite gut homogenate clone Rs-J58 sp. 2.45.2.1.3.1.6507 OTU 4 seqs prokMSA_id:69247 AB084953.1 termite gut clone NkS4 prokMSA_id:69670 AB085161.1 termite gut clone NkS-Ste2 prokMSA_id:72109 AB085159.1 termite gut clone NkS-Dev14 prokMSA_id:73183 AB085168.1 termite gut clone NkS-Oxy70 2.45.2.1.3.1.6508 OTU 2 seqs prokMSA_id:4043 X89050.1 termite hindgut clone mpsp2 prokMSA_id:4115 X89046.1 termite hindgut clone sp40_7 2.45.2.1.3.1.6509 OTU 1 seq prokMSA_id:4143 AB015820.1 Spirochaeta sp 2.45.2.1.3.1.6510 OTU 1 seq prokMSA_id:4071 AB015834.1 Spirochaeta sp 2.45.2.1.3.1.6511 OTU 4 seqs prokMSA_id:40147 AJ420234.1 Spirochaeta sp. kf401 prokMSA_id:69324 AB084970.1 termite gut clone NkS93 prokMSA_id:69390 AB085160.1 termite gut clone NkS-Ste1 prokMSA_id:72963 AB085158.1 termite gut clone NkS-Dev1 2.45.2.1.3.1.6513 OTU 2 seqs prokMSA_id:63216 AF524010.1 forested wetland clone FW20 prokMSA_id:63217 AF524009.1 forested wetland clone FW67 2.45.2.1.3.1.6516 OTU 1 seq prokMSA_id:36699 AF211318.1 hypersaline black mud clone MT10 2.45.2.1.3.1.6517 OTU 1 seq prokMSA_id:23660 AF320287.1 Treponema azotonutricium str. ZAS-9 2.45.2.1.3.1.6519 OTU 1 seq prokMSA_id:4080 X89047.1 termite hindgut clone sp40_8 2.45.2.1.3.1.6520 OTU 2 seqs prokMSA_id:4076 X89042.1 termite hindgut clone lsp5_9 prokMSA_id:4082 X89052.1 termite hindgut clone mpsp16 2.45.2.1.3.1.6521 OTU 1 seq prokMSA_id:4083 X89048.1 termite hindgut clone sp40_11 2.45.2.1.3.1.6522 OTU 1 seq prokMSA_id:73875 AF426101.1 Treponema refringens str. CIP 51.64 2.45.2.1.3.1.6523 OTU 1 seq prokMSA_id:78395 AB088912.1 termite gut homogenate clone Rs-J64 sp. 2.45.2.1.3.1.6526 OTU 1 seq prokMSA_id:83155 AY230217.1 Treponema sp. str. 7CPL208 2.45.2.1.3.1.6528 OTU 1 seq prokMSA_id:46681 AF275918.1 anaerobic digester clone AA14 2.45.2.1.3.1.6529 OTU 1 seq prokMSA_id:16871 AB062806.1 termite gut homogenate clone BCf10-21 2.45.2.1.3.1.6530 OTU 1 seq prokMSA_id:3984 AF068342.1 termite gut homogenate clone RFS6 2.45.2.1.3.1.6531 OTU 1 seq prokMSA_id:3854 AF023044.1 Treponema sp. str. V:19:D36 2.45.2.1.3.1.6532 OTU 1 seq prokMSA_id:56589 AB084963.1 termite gut clone NkS39 2.45.2.1.3.1.6535 OTU 1 seq prokMSA_id:77792 AB088868.1 termite gut homogenate clone Rs-B94 sp. 2.45.2.1.3.1.6536 OTU 1 seq prokMSA_id:3805 AF146245.1 clone CLEAR-22 2.45.2.1.3.1.6537 OTU 1 seq prokMSA_id:3806 AF104475.1 Olavius loisae endosymbiont 4 2.45.2.1.3.1.6540 OTU 7 seqs prokMSA_id:3905 AF023028.1 Treponema sp. str. III::D24 prokMSA_id:3917 AF056340.1 Treponema sp. str. III:B:U8A prokMSA_id:3921 AF182833.1 Treponema sp. str. III:F:AT004 prokMSA_id:3922 AF182836.1 Treponema sp. str. 3:E:AT013 prokMSA_id:3923 AF182838.1 Treponema sp. str. 3:D:BQ032 prokMSA_id:3957 AF182835.1 Treponema sp. str. 3:G:BB003 prokMSA_id:59569 AY134898.1 Treponema sp. oral clone EX137 2.45.2.1.3.1.6541 OTU 1 seq prokMSA_id:4046 AB008906.1 - 2.45.2.1.3.1.6543 OTU 1 seq prokMSA_id:4047 AF068334.1 termite gut homogenate clone RFS11 2.45.2.1.3.1.6544 OTU 1 seq prokMSA_id:4127 AF068426.1 termite gut homogenate clone RFS18 2.45.2.1.3.1.6546 OTU 5 seqs prokMSA_id:3853 AF033304.1 Treponema sp. Smibert-2 7::D96NR3 str. D96NR-3 prokMSA_id:17854 AF302939.1 Treponema parvum str. OMZ843 prokMSA_id:30574 AF302938.1 Treponema parvum str. OMZ842 prokMSA_id:36464 AF302937.1 Treponema parvum str. OMZ833 prokMSA_id:49225 AF302941.1 Treponema parvum str. OMZ832 2.45.2.1.3.1.6547 OTU 1 seq prokMSA_id:62701 AF507855.1 Mono Lake at depth 23 m station 6 July 2000 clone ML623J-23 bacterium 2.45.2.1.3.1.6549 OTU 1 seq prokMSA_id:63294 AF523927.1 forested wetland clone RCP1-64 2.45.2.1.3.1.6550 OTU 1 seq prokMSA_id:22449 AJ419816.1 Spirochaeta sp 2.45.2.1.3.1.6552 OTU 1 seq prokMSA_id:77955 AB088898.1 termite gut homogenate clone Rs-E91 sp. 2.45.2.1.3.1.6554 OTU 1 seq prokMSA_id:78084 AB088889.1 termite gut homogenate clone Rs-A43 sp. 2.45.2.1.3.1.6555 OTU 1 seq prokMSA_id:4053 AF068423.1 termite gut homogenate clone RFS94 2.45.2.1.3.1.6557 OTU 1 seq prokMSA_id:56171 AF454308.1 spirochete clone ML320J-13 2.45.2.1.3.1.6560 OTU 2 seqs prokMSA_id:3886 AB015824.1 Spirochaeta sp prokMSA_id:3887 AB015826.1 Spirochaeta sp 2.45.2.1.3.1.6561 OTU 6 seqs prokMSA_id:3829 M57737.1 Treponema bryantii prokMSA_id:3830 AF001693.1 rumen clone RC1 prokMSA_id:3831 AF001745.1 rumen clone RF13 prokMSA_id:3833 AB009242.1 rumen clone RFN95 bacterium prokMSA_id:103223 AB185736.1 rumen clone U28-H09 prokMSA_id:107163 AB185811.1 rumen clone U29-H01 2.45.2.1.3.1.6562 OTU 1 seq prokMSA_id:63291 AF523928.1 forested wetland clone RCP1-96 2.45.2.1.3.1.6564 OTU 1 seq prokMSA_id:25824 AB032009.1 protist termite clone HsDiSp319 clone 2.45.2.1.3.1.6565 OTU 2 seqs prokMSA_id:69238 AB085166.1 termite gut clone NkS-Oxy25 prokMSA_id:69779 AB084957.1 termite gut clone NkS9 2.45.2.1.3.1.6567 OTU 1 seq prokMSA_id:78163 AB088859.1 termite gut homogenate clone Rs-A48 sp. 2.45.2.1.3.1.6568 OTU 1 seq prokMSA_id:40667 AJ419821.1 Spirochaeta sp 2.45.2.1.3.1.6569 OTU 1 seq prokMSA_id:27500 AJ419824.1 Spirochaeta sp 2.45.2.1.3.1.6570 OTU 8 seqs prokMSA_id:3861 X87140.1 Treponema maltophilum periodontitis patient BR prokMSA_id:3880 AF023038.1 Treponema sp. str. IV:17B:C21 prokMSA_id:3882 AF023040.1 Treponema sp. str. IV:17C:GF6 prokMSA_id:3883 AF023041.1 Treponema sp. str. IV:17D:D31 prokMSA_id:3884 AF023042.1 Treponema sp. str. IV:18:C9 prokMSA_id:3888 AF056342.1 Treponema sp. str. IV:17E:D36 prokMSA_id:38741 AJ131282.1 Treponema lecithinolyticum str. ATCC 700332 PFB4G prokMSA_id:63015 X87139.1 Treponema lecithinolyticum periodontitis patient PFB4G 2.45.2.1.3.1.6571 OTU 1 seq prokMSA_id:86557 AJ458946.1 Mixotricha paradoxa is flagellate hindgut Mastotermes darwiniensis clone mp4 of 2.45.2.1.3.1.6572 OTU 1 seq prokMSA_id:51498 AJ419819.1 Spirochaeta sp 2.45.2.1.3.1.6573 OTU 1 seq prokMSA_id:69510 AB084955.1 termite gut clone NkS7 2.45.2.1.3.1.6574 OTU 1 seq prokMSA_id:4003 AF068422.1 termite gut homogenate clone RFS81 2.45.2.1.3.1.6575 OTU 3 seqs prokMSA_id:59914 AY133079.1 TCE-contaminated site clone ccslm226 prokMSA_id:91429 AY340839.1 sulfate-reducing fluidized-bed reactor clone SR_FBR_L44 prokMSA_id:101502 AY695839.1 gold mine isolate str. SA-8 2.45.2.1.3.1.6576 OTU 1 seq prokMSA_id:78359 AB088884.1 termite gut homogenate clone Rs-J14 sp. 2.45.2.1.3.1.6577 OTU 1 seq prokMSA_id:4008 AF157107.1 spirochete clone R5-B26 2.45.2.1.3.1.6578 OTU 12 seqs prokMSA_id:3876 AF068425.1 termite gut homogenate clone RFS105 prokMSA_id:3877 AF068429.1 termite gut homogenate clone RFS2 prokMSA_id:3878 AF068430.1 termite gut homogenate clone RFS66 prokMSA_id:3879 AF068432.1 termite gut homogenate clone RFS9 prokMSA_id:3969 AF068339.1 termite gut homogenate clone RFS29 prokMSA_id:22641 AB032005.1 protist termite clone HsDiSp314 clone prokMSA_id:29435 AB032003.1 protist termite clone HsPySp1 clone prokMSA_id:30690 AB032001.1 protist termite clone RsDiSp3 clone prokMSA_id:43411 AB032002.1 protist termite clone RsDiSp9 clone prokMSA_id:46814 AB032004.1 protist termite clone HsPySp20 clone prokMSA_id:77852 AB088858.1 termite gut homogenate clone Rs-G65 sp. prokMSA_id:78226 AB088904.1 termite gut homogenate clone Rs-P12 sp. 2.45.2.1.3.1.6579 OTU 1 seq prokMSA_id:69543 AB084968.1 termite gut clone NkS83 2.45.2.1.3.1.6580 OTU 1 seq prokMSA_id:3918 AF056341.1 Treponema sp. str. III:C:BA213 2.45.2.1.3.1.6581 OTU 1 seq prokMSA_id:42928 AJ408166.1 equine large intestine clone ML20 2.45.2.1.3.1.6582 OTU 1 seq prokMSA_id:25074 AF424376.1 spirochete clone MERTZ_21CM_139 2.45.2.1.3.1.6583 OTU 2 seqs prokMSA_id:78017 AB088915.1 termite gut homogenate clone Rs-Q13 sp. prokMSA_id:78252 AB088875.1 termite gut homogenate clone Rs-J42 sp. 2.45.2.1.3.1.6585 OTU 1 seq prokMSA_id:4027 AF068418.1 termite gut homogenate clone RFS60 2.45.2.1.3.1.6586 OTU 1 seq prokMSA_id:35642 AB062846.1 termite gut homogenate clone BCf9-14 2.45.2.1.3.1.6587 OTU 1 seq prokMSA_id:4097 AF068415.1 termite gut homogenate clone RFS102 2.45.2.1.3.1.6588 OTU 1 seq prokMSA_id:4038 X89044.1 termite hindgut clone sp5_18 2.45.2.1.3.1.6589 OTU 4 seqs prokMSA_id:4056 AJ009481.1 TCB-transforming consortium clone SJA-102 prokMSA_id:4131 AJ009476.1 TCB-transforming consortium clone SJA-69 prokMSA_id:4132 AJ009506.1 TCB-transforming consortium clone SJA-182 prokMSA_id:106752 AY426463.1 full-scale anaerobic UASB bioreactor treating paper mill wastewater clone E20 2.45.2.1.3.1.6590 OTU 2 seqs prokMSA_id:3860 AF182837.1 Treponema sp. str. 5:22:BH022 prokMSA_id:29328 AF385536.1 swab advanced noma lesion clone BZ013 2.45.2.1.3.1.6591 OTU 1 seq prokMSA_id:42877 AF302940.1 Treponema pectinovorum str. OMZ831 2.45.2.1.3.1.6592 OTU 1 seq prokMSA_id:4044 AB008904.1 - 2.45.2.1.3.1.6593 OTU 1 seq prokMSA_id:71422 AF357565.1 mpn-isolate group 17 2.45.2.1.3.1.6594 OTU 1 seq prokMSA_id:4118 AF068347.1 termite gut homogenate clone CFS121 2.45.2.1.3.1.6595 OTU 1 seq prokMSA_id:4049 AF068345.1 termite gut homogenate clone CFS6 2.45.2.1.3.1.6596 OTU 2 seqs prokMSA_id:4004 AF068428.1 termite gut homogenate clone RFS84 prokMSA_id:42498 AJ419822.1 Spirochaeta sp 2.45.2.1.3.1.6597 OTU 1 seq prokMSA_id:21434 AB062768.1 termite gut homogenate clone BCf1-01 sp. 2.45.2.1.3.1.6599 OTU 1 seq prokMSA_id:31994 AB062832.1 termite gut homogenate clone BCf6-15 2.45.2.1.3.1.6601 OTU 3 seqs prokMSA_id:4117 AF068346.1 termite gut homogenate clone CFS124 prokMSA_id:35727 AB062816.1 termite gut homogenate clone BCf3-09 prokMSA_id:47692 AB062829.1 termite gut homogenate clone BCf5-23 2.45.2.1.3.1.6602 OTU 1 seq prokMSA_id:3799 M88722.1 Spirochaeta halophila 2.45.2.1.3.1.6603 OTU 1 seq prokMSA_id:27323 AB062839.1 termite gut homogenate clone BCf7-24 2.45.2.1.3.1.6604 OTU 18 seqs prokMSA_id:3838 AF033306.1 Treponema subsp. socranskii str. D56BRIII6 ATCC 35536 subsp. prokMSA_id:3839 AB015887.1 Treponema subsp. socranskii 122C prokMSA_id:3840 AB015888.1 Treponema subsp. socranskii 1166 prokMSA_id:3841 AB015889.1 Treponema subsp. socranskii 128B prokMSA_id:3842 AB015890.1 Treponema subsp. socranskii 1267 prokMSA_id:3843 AB015891.1 Treponema socranskii subsp. buccale 351 prokMSA_id:3844 AB015892.1 Treponema socranskii subsp. buccale B418 prokMSA_id:3845 AB015893.1 Treponema socranskii subsp. buccale T10 prokMSA_id:3846 AF033303.1 Treponema sp. Smibert-5 str. D120CR-1 prokMSA_id:3847 AF033308.1 Treponema socranskii '04' subsp. 04 str. D11B-2 subsp. prokMSA_id:3848 AF056343.1 Treponema sp. str. VI:G:G47 prokMSA_id:3849 AF056344.1 Treponema sp. str. VI:F:C44 prokMSA_id:3850 AF033307.1 Treponema socranskii subsp. paredis str. ATCC 35535 subsp. prokMSA_id:3851 AF033305.1 Treponema socranskii subsp. buccale str. ATCC 35534 subsp. prokMSA_id:24210 AY005083.1 Treponema sp. 6:H:D15A-4 str. D15A-4 prokMSA_id:94913 AY369246.1 Treponema socranskii '04' subsp. 04 str. D40DR-2 prokMSA_id:95105 AY369255.1 Treponema socranskii subsp. buccale str. OMZ 884 prokMSA_id:95113 AY369254.1 Treponema socranskii subsp. paredis str. OMZ 882 2.45.2.1.3.1.6607 OTU 1 seq prokMSA_id:3812 X62809.1 Spirochaeta thermophila 2.45.2.1.3.1.6608 OTU 1 seq prokMSA_id:47380 AF426100.1 Treponema calligyrum str. CIP 64.40 2.45.2.1.3.1.6610 OTU 1 seq prokMSA_id:38414 AF211325.1 brackish water black mud clone MT57 2.45.2.1.3.1.6611 OTU 1 seq prokMSA_id:3949 L78126.1 Unknown 2.45.2.1.3.1.6612 OTU 1 seq prokMSA_id:3826 M71238.1 Treponema saccharophilum 2.45.2.1.3.1.6614 OTU 1 seq prokMSA_id:3889 Y16568.1 Treponema brennaborense 2.45.2.1.3.1.6615 OTU 3 seqs prokMSA_id:3980 AB015823.1 Spirochaeta sp prokMSA_id:4007 AB015825.1 Spirochaeta sp prokMSA_id:77899 AB088883.2 termite gut homogenate clone Rs-Q63 sp. 2.45.2.1.3.1.6618 OTU 1 seq prokMSA_id:3963 Y08894.1 Treponema sp 2.45.2.1.3.1.6619 OTU 1 seq prokMSA_id:3892 X89049.1 termite hindgut clone 40_12 2.45.2.1.3.1.6620 OTU 1 seq prokMSA_id:3967 AF050550.1 contaminated aquifer clone WCHB1-91 2.45.2.1.3.1.6621 OTU 1 seq prokMSA_id:3968 AF050551.1 contaminated aquifer clone WCHB1-30 2.45.2.1.3.1.6622 OTU 2 seqs prokMSA_id:4145 M57740.1 Spirochaeta aurantia prokMSA_id:89319 AJ565432.1 Spirochaeta aurantia WQM4 2.45.2.1.3.1.6623 OTU 1 seq prokMSA_id:78014 AB088865.1 termite gut homogenate clone Rs-D46 sp. 2.45.2.1.3.2 sf_2 214 seqs 2.45.2.1.3.2.6493 OTU 3 seqs prokMSA_id:4182 U42284.1 Borrelia anserina str. ES-1 prokMSA_id:4296 AJ224134.1 Borrelia burgdorferi CA8 prokMSA_id:4297 AJ224135.1 Borrelia burgdorferi CA29 2.45.2.1.3.2.6527 OTU 1 seq prokMSA_id:3966 AF050549.1 contaminated aquifer clone WCHB1-40 2.45.2.1.3.2.6566 OTU 210 seqs prokMSA_id:4147 M89937.1 Borrelia burgdorferi R-IP90 prokMSA_id:4148 M60970.1 Borrelia coriaceae prokMSA_id:4149 M60968.1 Borrelia hermsii prokMSA_id:4151 M64310.1 Borrelia burgdorferi prokMSA_id:4153 M89935.1 Borrelia burgdorferi CA2-87 prokMSA_id:4154 U42286.1 Borrelia coriaceae str. Co53T; ATCC 43381 prokMSA_id:4155 U42297.1 Borrelia persica str. UESV/340 prokMSA_id:4157 X85189.1 Borrelia burgdorferi prokMSA_id:4158 X85197.1 Borrelia afzelii prokMSA_id:4159 X85198.1 Borrelia garinii prokMSA_id:4160 X85202.1 Borrelia burgdorferi prokMSA_id:4161 AJ009749.1 Borrelia garinii isolate Far01 prokMSA_id:4162 AJ009750.1 Borrelia garinii isolate Far02 prokMSA_id:4163 AJ009751.1 Borrelia garinii isolate Fis01 prokMSA_id:4164 AJ009752.1 Borrelia garinii isolate Far03 prokMSA_id:4165 AJ009753.1 Borrelia garinii isolate Far04 prokMSA_id:4166 AF010165.1 Borrelia garinii str. A87S prokMSA_id:4168 D67018.1 Borrelia garinii str. 20047 prokMSA_id:4169 D67020.1 Borrelia tanukii str. OR2eL prokMSA_id:4170 D67023.1 Borrelia tanukii str. Hk501 prokMSA_id:4171 AB007450.1 Borrelia garinii prokMSA_id:4172 U23211.1 "Borrelia lonestari" prokMSA_id:4173 X85194.1 Borrelia afzelii prokMSA_id:4174 X85199.1 Borrelia garinii prokMSA_id:4177 X85193.1 Borrelia garinii prokMSA_id:4179 M89936.1 Borrelia burgdorferi Illinois 1 prokMSA_id:4180 X85195.1 Borrelia burgdorferi prokMSA_id:4183 M59293.1 Borrelia burgdorferi prokMSA_id:4185 L36160.1 Borrelia burgdorferi prokMSA_id:4187 X98230.1 Borrelia burgdorferi subsp. senso lato str. IR345 prokMSA_id:4188 X98226.1 Borrelia burgdorferi str. Poti B1 prokMSA_id:4189 X98228.1 Borrelia burgdorferi str. Poti B2 prokMSA_id:4190 X98229.1 Borrelia burgdorferi subsp. senso lato str. Poti B3 prokMSA_id:4191 U78153.1 Borrelia valaisiana str. AR-2 prokMSA_id:4192 U78154.1 Borrelia valaisiana str. M19 prokMSA_id:4193 U78155.1 Borrelia valaisiana str. M49 prokMSA_id:4194 U78156.1 Borrelia valaisiana str. M53 prokMSA_id:4195 X98232.1 Borrelia burgdorferi subsp. senso lato str. VS116 prokMSA_id:4196 X98233.1 Borrelia burgdorferi subsp. senso lato str. UK prokMSA_id:4198 D67019.1 Borrelia afzelii str. HT61 prokMSA_id:4199 L46688.1 "Borrelia andersonii" prokMSA_id:4202 L46701.1 "Borrelia andersonii" prokMSA_id:4203 L46695.1 Borrelia japonica prokMSA_id:4204 U28502.1 Borrelia sp. prokMSA_id:4205 U28503.1 Borrelia duttonii prokMSA_id:4208 M89938.1 Borrelia burgdorferi prokMSA_id:4209 L39080.1 Borrelia burgdorferi prokMSA_id:4210 AJ225165.1 Borrelia sp. str. VS116 prokMSA_id:4211 AB022140.1 Borrelia valaisiana str. CKA3a prokMSA_id:4212 AB022141.1 Borrelia valaisiana str. CKA1 prokMSA_id:4213 D67021.1 Borrelia sp. str. Am501 prokMSA_id:4214 D67022.1 Borrelia turdi str. Ya501 prokMSA_id:4215 D67024.1 Borrelia turdi str. Ac502 prokMSA_id:4216 AF102056.1 Borrelia sp. str. A14S prokMSA_id:4217 U44938.1 Borrelia burgdorferi prokMSA_id:4218 AB022142.1 Borrelia valaisiana str. CKA2a prokMSA_id:4219 AB022143.1 Borrelia valaisiana str. CKA4a prokMSA_id:4220 AB016974.1 Borrelia sp. str. 10MT prokMSA_id:4221 L37837.1 Borrelia species prokMSA_id:4222 AF107356.1 Borrelia recurrentis str. A4 prokMSA_id:4223 AF107357.1 Borrelia recurrentis str. A5 prokMSA_id:4224 AF107358.1 Borrelia recurrentis str. A8 prokMSA_id:4225 AF107359.1 Borrelia recurrentis str. A10 prokMSA_id:4226 AF107360.1 Borrelia recurrentis str. A17 prokMSA_id:4227 AF107361.1 Borrelia recurrentis str. A11 prokMSA_id:4228 AF107362.1 Borrelia recurrentis str. A16 prokMSA_id:4233 AF107367.1 Borrelia recurrentis str. A1 prokMSA_id:4235 U42299.1 Borrelia turicatae str. M2007 prokMSA_id:4237 M64309.1 Borrelia burgdorferi prokMSA_id:4238 L46696.1 Borrelia japonica prokMSA_id:4239 X57404.1 Borrelia burgdorferi prokMSA_id:4240 D45192.1 Borrelia sp. prokMSA_id:4241 U42292.1 Borrelia hermsii prokMSA_id:4243 U42285.1 Borrelia crocidurae str. UESV/626BAN prokMSA_id:4244 U42287.1 Borrelia crocidurae str. UESV/917BAR prokMSA_id:4249 U42301.1 Borrelia crocidurae str. UESV/523SIS prokMSA_id:4250 U42302.1 Borrelia crocidurae str. UESV/1096TEN prokMSA_id:4252 U42293.1 Borrelia duttonii str. UR/BD94MIT prokMSA_id:4254 U42294.1 Borrelia hispanica str. UESV/246 prokMSA_id:4255 U42300.1 Borrelia recurrentis str. A1 prokMSA_id:4256 AF116903.1 Borrelia sp prokMSA_id:4257 M60969.1 Borrelia burgdorferi prokMSA_id:4258 L39081.1 Borrelia burgdorferi prokMSA_id:4259 AB030751.1 Borrelia tanukii str. NPNE1 prokMSA_id:4263 U44939.1 Borrelia burgdorferi prokMSA_id:4265 X85204.1 Borrelia burgdorferi prokMSA_id:4266 M84815.1 Borrelia burgdorferi prokMSA_id:4267 X85192.1 Borrelia burgdorferi prokMSA_id:4268 U78151.1 Borrelia afzelii str. VS461 prokMSA_id:4269 L40598.1 Borrelia japonica prokMSA_id:4270 M64311.1 Borrelia burgdorferi prokMSA_id:4271 L46697.1 Borrelia afzelii prokMSA_id:4272 L40597.1 Borrelia japonica prokMSA_id:4274 M85075.1 Borrelia hermsii prokMSA_id:4275 M60967.1 Borrelia burgdorferi prokMSA_id:4277 X85200.1 Borrelia garinii prokMSA_id:4279 X85196.1 Borrelia burgdorferi prokMSA_id:4280 X85201.1 Borrelia burgdorferi prokMSA_id:4282 X85190.1 Borrelia afzelii prokMSA_id:4283 L40596.1 Borrelia species prokMSA_id:4286 AF091367.1 Borrelia sp. str. Z41293 prokMSA_id:4287 AF091368.1 Borrelia sp. str. Z41493 prokMSA_id:4288 AB022101.1 Borrelia sinica str. CMN3 prokMSA_id:4290 AB022145.1 Borrelia sinica str. CMN2 prokMSA_id:4293 AJ224131.1 Borrelia burgdorferi CA28 prokMSA_id:4295 AJ224133.1 Borrelia burgdorferi CA13 prokMSA_id:4298 AJ224136.1 Borrelia burgdorferi CA2 prokMSA_id:4300 AJ224138.1 Borrelia burgdorferi 25015 prokMSA_id:4304 AJ224142.1 Borrelia sp. NE49 prokMSA_id:16983 AF055421.1 Borrelia sp. HNM13 prokMSA_id:19185 AF228031.1 Borrelia hermsii str. SB82 prokMSA_id:19331 AB035405.1 Borrelia afzelii str. N490 prokMSA_id:19525 AB037123.1 Borrelia sp. str. KR1 prokMSA_id:20565 AB035394.1 Borrelia garinii str. F508 prokMSA_id:21264 AF055420.1 Borrelia sp. HNM19 prokMSA_id:22412 AB035393.1 Borrelia garinii str. F669 prokMSA_id:23336 AB035392.1 Borrelia garinii str. F641 prokMSA_id:25006 AB037125.1 Borrelia sp. str. TA1 prokMSA_id:25669 AF210138.1 Borrelia burgdorferi CA4 prokMSA_id:26743 AB035401.1 Borrelia garinii str. N346 prokMSA_id:26944 AB035400.1 Borrelia garinii str. U039 prokMSA_id:27079 AF210134.1 Borrelia coriaceae Co53 prokMSA_id:27096 AB035408.1 Borrelia burgdorferi str. 297 prokMSA_id:27288 AB035403.1 Borrelia garinii str. F632 prokMSA_id:27883 AB035387.1 Borrelia garinii str. N303 prokMSA_id:28678 AF228029.1 Borrelia hermsii str. MC77 prokMSA_id:31684 AB035385.1 Borrelia garinii str. PBi prokMSA_id:32451 AF210137.1 Borrelia parkeri prokMSA_id:33474 AB035399.1 Borrelia garinii str. F624 prokMSA_id:33625 AY049949.1 Borrelia sp. EFL-S0100110 prokMSA_id:34189 AB035388.1 Borrelia garinii str. T25 prokMSA_id:35785 AB035407.1 Borrelia afzelii str. N334 prokMSA_id:37085 AF055418.1 Borrelia sp. HN8 prokMSA_id:38090 AF210136.1 Borrelia coriaceae CA435 prokMSA_id:41987 AB035390.1 Borrelia garinii str. N417 prokMSA_id:43875 AF210135.1 Borrelia coriaceae CA434 prokMSA_id:44343 AB037126.1 Borrelia sp. str. TM1 prokMSA_id:44729 AB035389.1 Borrelia garinii str. U063 prokMSA_id:45376 AB035395.1 Borrelia garinii str. N341 prokMSA_id:45780 AF055416.1 Borrelia sp. HN6 prokMSA_id:46301 AB035397.1 Borrelia garinii str. K269 prokMSA_id:47110 AB035386.1 Borrelia garinii str. F511 prokMSA_id:48535 AF228030.1 Borrelia hermsii str. NM84 prokMSA_id:49261 AB035396.1 Borrelia garinii str. N374 prokMSA_id:51974 AY024345.1 Borrelia sp. LB-2001 prokMSA_id:52230 AB035391.1 Borrelia garinii str. F548 prokMSA_id:52646 AB035402.1 Borrelia garinii str. N410 prokMSA_id:52958 AB035406.1 Borrelia afzelii str. U001 prokMSA_id:55311 AB091460.2 Borrelia valaisiana str. OS115/01 prokMSA_id:55731 AB091817.1 Borrelia garinii str. Tr77 prokMSA_id:55971 AB091457.2 Borrelia valaisiana str. OG45/01 prokMSA_id:59693 AB091824.1 Borrelia garinii str. Tr309 prokMSA_id:59694 AB091823.1 Borrelia burgdorferi str. Tr293 prokMSA_id:59695 AB091821.1 Borrelia lusitaniae str. Tr210 prokMSA_id:59696 AB091818.1 Borrelia afzelii str. Tr96 prokMSA_id:59697 AB091820.1 Borrelia lusitaniae str. Tr170 prokMSA_id:59698 AB091819.1 Borrelia lusitaniae str. Tr161 prokMSA_id:59699 AB091822.1 Borrelia lusitaniae str. Tr213 prokMSA_id:59700 AB091816.1 Borrelia afzelii str. Tr38 prokMSA_id:59704 AB091815.1 Borrelia valaisiana str. Tr29 prokMSA_id:59841 AB091465.2 Borrelia valaisiana str. OS3/01 prokMSA_id:59842 AB091469.2 Borrelia valaisiana str. OS66/01 prokMSA_id:59843 AB091463.2 Borrelia valaisiana str. OR5/01 prokMSA_id:59846 AB091456.2 Borrelia valaisiana str. OC1/01 prokMSA_id:60001 AB091468.1 Borrelia valaisiana str. OS49 prokMSA_id:60002 AB091467.1 Borrelia valaisiana str. OS42 prokMSA_id:60004 AB091461.1 Borrelia valaisiana str. OM58/01 prokMSA_id:60005 AB091459.1 Borrelia valaisiana str. OM50 prokMSA_id:60010 AB091458.1 Borrelia valaisiana str. OM43 prokMSA_id:66988 AF055417.1 Borrelia sp. HN7 prokMSA_id:71584 AB091462.1 Borrelia valaisiana str. OM92/01 prokMSA_id:72227 AB091464.1 Borrelia valaisiana str. OS28/01 prokMSA_id:73630 AF497996.1 Borrelia sp. I-77 prokMSA_id:74591 AB091466.1 Borrelia valaisiana str. OS31 prokMSA_id:74612 AB035398.1 Borrelia garinii str. N337 prokMSA_id:76818 AY166715.1 Borrelia lonestari prokMSA_id:79095 AF467973.1 Borrelia sp. BC-1 prokMSA_id:79116 AF467976.1 Borrelia sp. TXW-1 prokMSA_id:79150 AF467967.1 Borrelia sp. MI-8 prokMSA_id:79174 AF467970.1 Borrelia sp. SCGT-10 prokMSA_id:79226 AF467969.1 Borrelia sp. SCGT-8a prokMSA_id:79244 AF467966.1 Borrelia sp. MI-6 prokMSA_id:79303 AF467959.1 Borrelia sp. SI-10 prokMSA_id:79357 AF467974.1 Borrelia sp. MOK-3a prokMSA_id:79368 AF467975.1 Borrelia sp. MOS-1b prokMSA_id:79408 AF467968.1 Borrelia sp. MI-9 prokMSA_id:79467 AF467963.1 Borrelia sp. FD-1 prokMSA_id:79496 AF467962.1 Borrelia sp. AI-1 prokMSA_id:79528 AF467972.1 Borrelia sp. MOD-5 prokMSA_id:87237 AF529085.1 Borrelia sp. str. LB-W100 prokMSA_id:89055 AY129302.1 Borrelia garinii str. it77 prokMSA_id:90093 AB111523.1 Borrelia garinii ASF prokMSA_id:94239 AY147008.1 Borrelia spielmani str. PC-Eq17 prokMSA_id:95373 AB111850.1 Borrelia turcica str. IST4 prokMSA_id:96034 AB111851.1 Borrelia turcica str. IST4 prokMSA_id:96377 AB111853.1 Borrelia turcica str. ISTF1 prokMSA_id:96595 AB111852.1 Borrelia turcica str. IST6 prokMSA_id:97806 AB111854.1 Borrelia turcica str. ISTF2 prokMSA_id:98539 AB111849.1 Borrelia turcica str. IST7 prokMSA_id:99035 AY342029.1 Borrelia garinii str. SIKA1 prokMSA_id:100147 AY574639.1 Borrelia afzelii str. Ip-21 prokMSA_id:102963 AY342031.1 Borrelia garinii str. PD89 prokMSA_id:103113 AY342032.1 Borrelia garinii str. K48 prokMSA_id:103262 AY342033.1 Borrelia garinii str. IP89 prokMSA_id:103519 AB178148.1 Borrelia garinii str. Nr198 prokMSA_id:103654 AB178149.1 Borrelia valaisiana str. Nr231 prokMSA_id:103935 AY442141.1 Borrelia lonestari LS-1 prokMSA_id:107325 AB178150.1 Borrelia afzelii str. Nr25 prokMSA_id:107763 AF467965.1 Borrelia sp. MI-5 prokMSA_id:107837 AY342028.1 Borrelia burgdorferi str. IP2 2.45.2.1.3.3 sf_3 3 seqs 2.45.2.1.3.3.6514 OTU 2 seqs prokMSA_id:77624 AB088910.1 termite gut homogenate clone Rs-H09 sp. prokMSA_id:77774 AB088897.1 termite gut homogenate clone Rs-B68 sp. 2.45.2.1.3.3.6558 OTU 1 seq prokMSA_id:37803 AF166259.1 Spironema culicis str. BR91 2.45.2.1.3.4 sf_4 1 seq 2.45.2.1.3.4.6600 OTU 1 seq prokMSA_id:3797 M88723.1 Spirochaeta litoralis 2.45.2.1.3.5 sf_5 1 seq 2.45.2.1.3.5.6515 OTU 1 seq prokMSA_id:4146 U42638.1 Cristispira pectinis 2.45.2.1.3.6 sf_6 1 seq 2.45.2.1.3.6.6598 OTU 1 seq prokMSA_id:3793 L31543.1 Brevinema andersonii 2.45.2.2 Unclassified 1 seq 2.45.2.2.1 Unclassified 1 seq 2.45.2.2.1.1 sf_1 1 seq 2.45.2.2.1.1.6940 OTU 1 seq prokMSA_id:4478 AF027047.1 hot spring clone OPB40 2.45.3 Unclassified 1 seq 2.45.3.1 Unclassified 1 seq 2.45.3.1.1 Unclassified 1 seq 2.45.3.1.1.1 sf_1 1 seq 2.45.3.1.1.1.10035 OTU 1 seq prokMSA_id:37498 AF402980.1 hot spring clone bacteriap35 2.46 SR1 6 seqs 2.46.1 Unclassified 6 seqs 2.46.1.1 Unclassified 6 seqs 2.46.1.1.1 Unclassified 6 seqs 2.46.1.1.1.1 sf_1 6 seqs 2.46.1.1.1.1.2761 OTU 1 seq prokMSA_id:14123 AB015542.1 deep-sea sediment clone BD2-14 2.46.1.1.1.1.2900 OTU 1 seq prokMSA_id:80119 AY193173.1 sulfur river filament clone SRB2 2.46.1.1.1.1.2923 OTU 1 seq prokMSA_id:77728 AB089125.1 termite gut clone Rs-J47 2.46.1.1.1.1.2983 OTU 1 seq prokMSA_id:14018 AF125207.1 oral cavity clone X112 2.46.1.1.1.1.3110 OTU 2 seqs prokMSA_id:79946 AY193171.1 sulfur river filament clone SRB67 prokMSA_id:80797 AY193169.1 sulfur river filament clone SRB44 2.47 Synergistes 41 seqs 2.47.1 Unclassified 41 seqs 2.47.1.1 Unclassified 41 seqs 2.47.1.1.1 Unclassified 41 seqs 2.47.1.1.1.1 sf_3 41 seqs 2.47.1.1.1.1.1013 OTU 1 seq prokMSA_id:1651 AF073521.1 Aminobacterium mobilis 2.47.1.1.1.1.117 OTU 1 seq prokMSA_id:78257 AB089065.2 termite gut homogenate clone Rs-D89 2.47.1.1.1.1.248 OTU 5 seqs prokMSA_id:1637 U81706.2 anaerobic digestor clone vadinCA02 prokMSA_id:1652 U46538.1 oil field clone SYNE4 prokMSA_id:36934 AF447148.1 clone TDC-S1:29 prokMSA_id:70446 AJ249260.1 DCE dechlorinating consortium clone DCE29 prokMSA_id:81485 AY217431.1 TCE-dechlorinating microbial community clone 11H 2.47.1.1.1.1.272 OTU 1 seq prokMSA_id:78385 AB089066.1 termite gut homogenate clone Rs-C88 2.47.1.1.1.1.297 OTU 1 seq prokMSA_id:1638 U81735.2 sludge clone HA73 2.47.1.1.1.1.353 OTU 1 seq prokMSA_id:82669 AY261810.1 UASB reactor granular sludge clone PD-UASB-13 G+C 2.47.1.1.1.1.512 OTU 2 seqs prokMSA_id:1634 U50711.1 Anaerobaculum thermoterrnum prokMSA_id:42039 AJ243189.1 Anaerobaculum sp. NGA 2.47.1.1.1.1.60 OTU 1 seq prokMSA_id:68344 AF481216.1 Flexistipes sp. str. E3_33 2.47.1.1.1.1.601 OTU 2 seqs prokMSA_id:50590 AF229792.1 terephthalate-degrading consortium clone TA19 prokMSA_id:81956 AY217426.1 TCE-dechlorinating microbial community clone 8D 2.47.1.1.1.1.677 OTU 2 seqs prokMSA_id:18164 AF280829.1 bioreactor clone tbr4-7 prokMSA_id:71796 AF280820.1 bioreactor clone tbr1-2 2.47.1.1.1.1.717 OTU 5 seqs prokMSA_id:1635 U52817.1 Dethiosulfovibrio peptidovorans prokMSA_id:70882 AF234543.1 Dethiosulfovibrio russensis prokMSA_id:71455 AF234542.1 Dethiosulfovibrio russensis prokMSA_id:72749 AY005466.1 Dethiosulfovibrio acidaminovorans prokMSA_id:72998 AF234544.1 Dethiosulfovibrio marinus 2.47.1.1.1.1.719 OTU 2 seqs prokMSA_id:30163 AY005444.1 Homo sapiens subgingival plaque clone BA121 oral prokMSA_id:86619 AY207056.1 Synergistes sp. P1 str. P4G_18 2.47.1.1.1.1.740 OTU 1 seq prokMSA_id:49883 AF371930.1 phylotype OTU-359 swine intestine clone p-4292-4Wa3 2.47.1.1.1.1.808 OTU 11 seqs prokMSA_id:1642 AF125199.1 oral cavity clone BH017 prokMSA_id:1643 AF125200.1 oral cavity clone D084 prokMSA_id:1644 AF125201.1 oral cavity clone D006 prokMSA_id:1645 AF125202.1 environmental oral cavity clone W028 prokMSA_id:1646 AF125203.1 oral cavity clone W090 prokMSA_id:47490 AY005445.1 Homo sapiens subgingival plaque clone BB062 oral prokMSA_id:68345 AF481215.1 E3 clone MCE3_120 prokMSA_id:68348 AF481214.1 E2 clone MCE7_5 prokMSA_id:71329 AY005447.1 oral cavity clone BH007 prokMSA_id:92501 AY349372.1 human oral cavity clone JV023 prokMSA_id:92848 AY349370.1 human oral cavity clone JV001 2.47.1.1.1.1.915 OTU 1 seq prokMSA_id:1636 U81658.2 anaerobic digestor clone vadinBB02 2.47.1.1.1.1.961 OTU 1 seq prokMSA_id:1641 AF129869.1 anaerobic digestor clone BB48 2.47.1.1.1.1.974 OTU 1 seq prokMSA_id:19846 AB062819.1 termite gut homogenate clone BCf4-02 2.47.1.1.1.1.978 OTU 1 seq prokMSA_id:1649 AF069287.1 Aminobacterium colombiense 2.47.1.1.1.1.988 OTU 1 seq prokMSA_id:38526 AB062836.1 termite gut homogenate clone BCf7-04 2.48 Termite group 1 10 seqs 2.48.1 Unclassified 10 seqs 2.48.1.1 Unclassified 10 seqs 2.48.1.1.1 Unclassified 10 seqs 2.48.1.1.1.1 sf_1 1 seq 2.48.1.1.1.1.605 OTU 1 seq prokMSA_id:36990 AF269003.1 lab-scale sludge clone SBR2095 2.48.1.1.1.2 sf_2 9 seqs 2.48.1.1.1.2.22 OTU 4 seqs prokMSA_id:1524 AB004577.1 termite gut clone TG25 prokMSA_id:1525 AB004578.1 termite gut clone TG33 prokMSA_id:1704 AB004576.1 termite gut clone TG14 prokMSA_id:106411 AB089048.2 termite gut homogenate clone Rs-D17 2.48.1.1.1.2.437 OTU 2 seqs prokMSA_id:78103 AB089050.2 termite gut homogenate clone Rs-D43 group prokMSA_id:78190 AB089052.2 termite gut homogenate clone Rs-M73 group 2.48.1.1.1.2.438 OTU 1 seq prokMSA_id:1703 AB004575.1 termite gut clone TG13 2.48.1.1.1.2.722 OTU 1 seq prokMSA_id:77986 AB089051.1 termite gut homogenate clone Rs-H93 group 2.48.1.1.1.2.993 OTU 1 seq prokMSA_id:77861 AB089049.1 termite gut homogenate clone Rs-D95 group 2.49 Thermodesulfobacteria 31 seqs 2.49.1 Thermodesulfobacteria 31 seqs 2.49.1.1 Thermodesulfobacteriales 31 seqs 2.49.1.1.1 Thermodesulfobacteriaceae 31 seqs 2.49.1.1.1.1 sf_1 30 seqs 2.49.1.1.1.1.48 OTU 1 seq prokMSA_id:52699 AF393376.1 Thermodesulfatator indicus 2.49.1.1.1.1.62 OTU 3 seqs prokMSA_id:1259 X96725.1 Thermodesulfobacterium hveragerdicum prokMSA_id:38674 AF418169.1 Thermodesulfobacterium commune prokMSA_id:70598 AF334601.1 Thermodesulfobacterium thermophilum 2.49.1.1.1.1.667 OTU 26 seqs prokMSA_id:1252 AF027096.1 hot spring clone OPB45 prokMSA_id:1256 AF027093.1 Thermodesulfobacterium group clone OPT4 prokMSA_id:1257 AF027094.1 Thermodesulfobacterium group clone OPT53 prokMSA_id:1258 AF027095.1 Thermodesulfobacterium group clone OPS7 prokMSA_id:27454 AF411013.1 Geothermobacterium ferrireducens prokMSA_id:39066 AF255596.1 Thermodesulfobacterium sp. SRI-93 prokMSA_id:42031 AF332514.1 Desulfatotherma hydrogenophila prokMSA_id:43680 AF352533.1 Boulder Spring 92-95#C subaqueous stratiform geyserite Sentinel Meadows Yellowstone National Park clone BSpN50 sp. prokMSA_id:67861 AY082369.1 hot spring clone DGG19 prokMSA_id:72666 AF255595.1 Thermodesulfobacterium sp. SRI-27 prokMSA_id:111429 AY882722.1 hot spring clone SK167 prokMSA_id:111461 AY882726.1 hot spring clone SK171 prokMSA_id:111511 AY882738.1 hot spring clone SK183 prokMSA_id:111688 AY882740.1 hot spring clone SK185 prokMSA_id:111747 AY882721.1 hot spring clone SK166 prokMSA_id:111796 AY882739.1 hot spring clone SK184 prokMSA_id:112032 AY882756.1 hot spring clone SK201 prokMSA_id:112211 AY882737.1 hot spring clone SK182 prokMSA_id:112269 AY882765.1 hot spring clone SK211 prokMSA_id:112487 AY862078.1 Washburn Spring 3 community clone WB3B094 prokMSA_id:112554 AY862050.1 Washburn Spring 3 community clone WB3B011 prokMSA_id:112564 AY861757.1 Obsidian Pool prime community clone OPPB014 prokMSA_id:112608 AY861800.1 Obsidian Pool prime community clone OPPB067 prokMSA_id:112668 AY862065.1 Washburn Spring 3 community clone WB3B040 prokMSA_id:112674 AY862037.1 Washburn Spring 1 community clone WB1B006 prokMSA_id:112696 AY862044.1 Washburn Spring 1 community clone WB1B014 2.49.1.1.1.2 sf_3 1 seq 2.49.1.1.1.2.7678 OTU 1 seq prokMSA_id:7378 Z99998.1 freshwater clone LD17 2.5 Aquificae 172 seqs 2.5.1 Aquificae 172 seqs 2.5.1.1 Aquificales 172 seqs 2.5.1.1.1 Aquificaceae 62 seqs 2.5.1.1.1.1 sf_1 56 seqs 2.5.1.1.1.1.445 OTU 40 seqs prokMSA_id:1174 AJ005640.1 Thermocrinis ruber prokMSA_id:1199 Z30242.1 Hydrogenobacter hydrogenophilus prokMSA_id:1207 AF027104.1 Aquificales clone OPS132 prokMSA_id:1209 Z30189.1 Hydrogenobacter thermophilus prokMSA_id:1210 AB026268.1 Hydrogenobacter subterraneus prokMSA_id:1211 U05661.1 hot spring clone EM17 prokMSA_id:1213 AF027105.1 Aquificales clone OPS165 prokMSA_id:16683 AJ320214.1 Hydrogenobacter sp. str. MV4L2B prokMSA_id:18011 AJ320215.1 Hydrogenobacter sp. str. PA14 prokMSA_id:21804 AJ320219.1 Thermocrinis sp. str. P2L2B prokMSA_id:22567 AJ278895.1 Thermocrinis sp. HI 11/12 prokMSA_id:23410 AF361217.1 hot spring clone SUBT-1 prokMSA_id:25858 AF301908.1 Hydrogenobacter-like str. SS5H1 prokMSA_id:31233 AJ320218.1 Hydrogenobacter sp. str. GV8L3A prokMSA_id:33986 AJ320216.1 Hydrogenobacter sp. str. BB4L1B prokMSA_id:35025 AJ320213.1 Hydrogenobacter sp. str. PZ2AL1B prokMSA_id:36754 AJ320220.1 Thermocrinis sp. str. UZ23L3A prokMSA_id:38669 AJ320222.1 Thermocrinis sp. str. H7L1B prokMSA_id:38815 AF255599.1 Thermocrinis-like str. SRI-48 prokMSA_id:39236 AY007593.1 Hydrogenobacter sp. IT-7242 prokMSA_id:46163 AJ320217.1 Hydrogenobacter sp. str. UZ27L2A prokMSA_id:51871 AF301907.1 hot spring clone pIce1 prokMSA_id:52320 AJ320221.1 Thermocrinis sp. str. G3L1B prokMSA_id:60606 AF407692.1 Great Artesian Basin clone R57 prokMSA_id:60621 AF407675.1 Great Artesian Basin clone Y04 prokMSA_id:60624 AF407673.1 Great Artesian Basin clone Sed01 prokMSA_id:67859 AY082371.1 hot spring clone DGG36 prokMSA_id:70459 AF453505.1 Aquificales clone pKA prokMSA_id:106785 AY569296.1 pink microbial mat clone YJQ-28 prokMSA_id:110416 AB199564.1 hot spring Japan clone NHS-03 prokMSA_id:111430 AY882774.1 hot spring clone SK220 prokMSA_id:111701 AY882760.1 hot spring clone SK206 prokMSA_id:112146 AY882729.1 hot spring clone SK174 prokMSA_id:112295 AY882773.1 hot spring clone SK219 prokMSA_id:112477 AY861821.1 Obsidian Pool prime community clone OPPB091 prokMSA_id:112497 AY861887.1 Obsidian Pool prime community clone OPPB168 prokMSA_id:112499 AY861837.1 Obsidian Pool prime community clone OPPB111 prokMSA_id:112605 AY861888.1 Obsidian Pool prime community clone OPPB170 prokMSA_id:112615 AY861884.1 Obsidian Pool prime community clone OPPB165 prokMSA_id:112681 AY861845.1 Obsidian Pool prime community clone OPPB119 2.5.1.1.1.1.82 OTU 16 seqs prokMSA_id:1187 M83548.2 Aquifex pyrophilus prokMSA_id:30117 AF393377.1 Aquifex-like str. CIR3017H090 prokMSA_id:32822 AJ320223.1 Aquifex sp. str. Gri14L3B prokMSA_id:38306 AE000751.1 Aquifex aeolicus str. VF5 prokMSA_id:39217 AJ309733.1 Aquifex aeolicus prokMSA_id:39591 AJ320224.1 Aquifex sp. str. Ob6 prokMSA_id:51070 NC_000918.1 Aquifex aeolicus VF5 prokMSA_id:51605 AE000709.1 Aquifex aeolicus str. VF5 prokMSA_id:82720 AB095174.1 Aquifex sp. str. Aq-365-85-NO3 prokMSA_id:82818 AB095171.1 Aquifex sp. str. Aq-1-85-NO3 prokMSA_id:83172 AB095173.1 Aquifex sp. str. Aq-365-85-1%O2 prokMSA_id:83524 AB095169.1 Aquifex sp. str. Aq-1-70-1%O2 prokMSA_id:84742 AB095170.1 Aquifex sp. str. Aq-1-85-1%O2 prokMSA_id:85552 AB095172.1 Aquifex sp. str. Aq-365-70-1%O2 prokMSA_id:86227 AB095175.1 Aquifex sp. str. Aq-I-70-1%O2 prokMSA_id:86369 AB095176.1 Aquifex sp. str. Aq-S-70-1%O2 2.5.1.1.1.2 sf_2 6 seqs 2.5.1.1.1.2.256 OTU 1 seq prokMSA_id:32720 AF402979.1 hot spring clone bacteriap28 2.5.1.1.1.2.762 OTU 5 seqs prokMSA_id:1189 AF068782.2 hydrothermal vent clone VC2.1 Bac39 prokMSA_id:1194 AF068791.2 hydrothermal vent clone VC2.1 Bac10 prokMSA_id:1195 AF068792.2 hydrothermal vent clone VC2.1 Bac11 prokMSA_id:1196 AF068801.2 hydrothermal vent clone VC2.1 Bac27 prokMSA_id:1198 AF068807.2 hydrothermal vent clone VC2.1 Bac33 2.5.1.1.2 Hydrogenobaculum 3 seqs 2.5.1.1.2.1 sf_1 3 seqs 2.5.1.1.2.1.653 OTU 3 seqs prokMSA_id:1176 D16296.1 Hydrogenobaculum acidophilum prokMSA_id:26906 AF325179.1 hot spring clone B5 prokMSA_id:43828 AJ320225.1 Hydrogenobaculum sp. str. NOR3L3B 2.5.1.1.3 Hydrogenothermaceae 89 seqs 2.5.1.1.3.1 sf_1 89 seqs 2.5.1.1.3.1.220 OTU 6 seqs prokMSA_id:1177 AF027098.1 hot spring clone OPB13 prokMSA_id:1182 AF018186.1 hot spring clone env.OPS1 prokMSA_id:1183 AF018189.1 hot spring clone env.OPS4 prokMSA_id:1184 AF018192.1 hot spring clone env.OPS7 prokMSA_id:60550 AF507961.1 Calcite Springs Yellowstone National Park WY USA isolate str. YNP-SS1 YNP-SS1 prokMSA_id:112531 AY862033.1 Washburn Spring 1 community clone WB1B001 2.5.1.1.3.1.381 OTU 1 seq prokMSA_id:32287 AJ292525.1 Hydrogenothermus marinus VM1 2.5.1.1.3.1.737 OTU 66 seqs prokMSA_id:1186 AF018196.1 hot spring clone env.OPS14 prokMSA_id:17781 AF445734.1 travertine hot spring clone SM2G01 prokMSA_id:25727 AF445739.1 travertine hot spring clone SM2G07 prokMSA_id:27456 AF445736.1 travertine hot spring clone SM2G04 prokMSA_id:38487 AF445658.1 travertine hot spring clone SM1B11 prokMSA_id:42953 AF113542.1 hot spring clone pBB prokMSA_id:49376 AF445697.1 travertine hot spring clone SM1G03 prokMSA_id:56574 AB073130.1 Aquificales clone:YUM915 clone YUM915 prokMSA_id:67472 AB073128.1 Aquificales clone:YE3152 clone YE3152 prokMSA_id:67473 AB073125.1 Aquificales clone:YE2101 clone YE2101 prokMSA_id:67474 AB073126.1 Aquificales clone:YE2921 clone YE2921 prokMSA_id:67475 AB073123.1 Aquificales clone:YE111 clone YE111 prokMSA_id:67476 AB073124.1 Aquificales clone:YE12 clone YE12 prokMSA_id:67477 AB073127.1 Aquificales clone:YE31422 clone YE31422 prokMSA_id:71370 AF528192.1 Sulfurihydrogenibium azorense prokMSA_id:72765 AF453509.1 Mammoth Springs Yellowstone National Park WY USA clone pTthxG5 bacterium prokMSA_id:112462 AY861762.1 Obsidian Pool prime community clone OPPB019 prokMSA_id:112464 AY861878.1 Obsidian Pool prime community clone OPPB159 prokMSA_id:112470 AY861819.1 Obsidian Pool prime community clone OPPB089 prokMSA_id:112480 AY861745.1 Obsidian Pool prime community clone OPPB002 prokMSA_id:112482 AY861873.1 Obsidian Pool prime community clone OPPB153 prokMSA_id:112496 AY861763.1 Obsidian Pool prime community clone OPPB020 prokMSA_id:112502 AY861789.1 Obsidian Pool prime community clone OPPB056 prokMSA_id:112503 AY861771.1 Obsidian Pool prime community clone OPPB028 prokMSA_id:112505 AY861767.1 Obsidian Pool prime community clone OPPB024 prokMSA_id:112508 AY861769.1 Obsidian Pool prime community clone OPPB026 prokMSA_id:112510 AY861865.1 Obsidian Pool prime community clone OPPB144 prokMSA_id:112512 AY861868.1 Obsidian Pool prime community clone OPPB148 prokMSA_id:112514 AY861813.1 Obsidian Pool prime community clone OPPB082 prokMSA_id:112516 AY861879.1 Obsidian Pool prime community clone OPPB160 prokMSA_id:112520 AY861749.1 Obsidian Pool prime community clone OPPB006 prokMSA_id:112528 AY861822.1 Obsidian Pool prime community clone OPPB092 prokMSA_id:112536 AY861863.1 Obsidian Pool prime community clone OPPB142 prokMSA_id:112547 AY861815.1 Obsidian Pool prime community clone OPPB084 prokMSA_id:112549 AY861774.1 Obsidian Pool prime community clone OPPB031 prokMSA_id:112553 AY861890.1 Obsidian Pool prime community clone OPPB174 prokMSA_id:112566 AY861836.1 Obsidian Pool prime community clone OPPB110 prokMSA_id:112568 AY861891.1 Obsidian Pool prime community clone OPPB176 prokMSA_id:112570 AY861795.1 Obsidian Pool prime community clone OPPB062 prokMSA_id:112582 AY861861.1 Obsidian Pool prime community clone OPPB139 prokMSA_id:112583 AY861794.1 Obsidian Pool prime community clone OPPB061 prokMSA_id:112585 AY861898.1 Obsidian Pool prime community clone OPPB188 prokMSA_id:112591 AY861867.1 Obsidian Pool prime community clone OPPB147 prokMSA_id:112596 AY861761.1 Obsidian Pool prime community clone OPPB018 prokMSA_id:112611 AY861899.1 Obsidian Pool prime community clone OPPB189 prokMSA_id:112612 AY861816.1 Obsidian Pool prime community clone OPPB085 prokMSA_id:112628 AY861902.1 Obsidian Pool prime community clone OPPB192 prokMSA_id:112636 AY861787.1 Obsidian Pool prime community clone OPPB054 prokMSA_id:112639 AY861852.1 Obsidian Pool prime community clone OPPB128 prokMSA_id:112643 AY861829.1 Obsidian Pool prime community clone OPPB101 prokMSA_id:112648 AY861848.1 Obsidian Pool prime community clone OPPB124 prokMSA_id:112652 AY861857.1 Obsidian Pool prime community clone OPPB135 prokMSA_id:112653 AY861764.1 Obsidian Pool prime community clone OPPB021 prokMSA_id:112654 AY861841.1 Obsidian Pool prime community clone OPPB115 prokMSA_id:112658 AY861809.1 Obsidian Pool prime community clone OPPB078 prokMSA_id:112660 AY861876.1 Obsidian Pool prime community clone OPPB157 prokMSA_id:112663 AY861830.1 Obsidian Pool prime community clone OPPB103 prokMSA_id:112666 AY861824.1 Obsidian Pool prime community clone OPPB096 prokMSA_id:112675 AY861849.1 Obsidian Pool prime community clone OPPB125 prokMSA_id:112683 AY861838.1 Obsidian Pool prime community clone OPPB112 prokMSA_id:112687 AY861744.1 Obsidian Pool prime community clone OPPB001 prokMSA_id:112693 AY861754.1 Obsidian Pool prime community clone OPPB011 prokMSA_id:112698 AY861854.1 Obsidian Pool prime community clone OPPB132 prokMSA_id:112705 AY861775.1 Obsidian Pool prime community clone OPPB032 prokMSA_id:112706 AY861827.1 Obsidian Pool prime community clone OPPB099 prokMSA_id:112712 AY861758.1 Obsidian Pool prime community clone OPPB015 2.5.1.1.3.1.741 OTU 8 seqs prokMSA_id:1188 AB005736.1 hot spring clone GANI4 prokMSA_id:1190 AB005735.1 hot spring clone GAN13 prokMSA_id:1191 AB005737.1 hot spring clone NAK9 prokMSA_id:1192 AB005738.1 hot spring clone NAK14 prokMSA_id:34570 AB071324.1 Sulfurihydrogenibium subterraneum str. HGMK-1 prokMSA_id:39523 AF255597.1 hot spring clone SRI-240 prokMSA_id:64268 AF453506.1 Aquificales clone pKB prokMSA_id:70820 AB071325.1 Aquificales str. HGM-K3 2.5.1.1.3.1.812 OTU 8 seqs prokMSA_id:1197 AF068802.2 hydrothermal vent clone VC2.1 Bac28 prokMSA_id:22382 AF393378.1 Hydrogenothermus-like str. CIR30126 prokMSA_id:29654 AF393379.1 Hydrogenothermus-like str. CIR30173 prokMSA_id:30394 AF188332.1 Persephonella marina prokMSA_id:60551 AF507960.1 Persephonella sp. str. MAR9703 prokMSA_id:63452 AF385630.1 Persephonella guaymasensis str. H2 prokMSA_id:64362 AB086419.1 Persephonella hydrogeniphila str. 29W prokMSA_id:70561 AF507959.1 Persephonella sp. str. MAR10202 2.5.1.1.4 Unclassified 18 seqs 2.5.1.1.4.1 sf_1 15 seqs 2.5.1.1.4.1.230 OTU 1 seq prokMSA_id:1260 AJ001049.1 Desulfurobacterium thermolithotrophum 2.5.1.1.4.1.2322 OTU 1 seq prokMSA_id:28514 AJ132734.1 hydrothermal vent clone CHA3-125 2.5.1.1.4.1.2346 OTU 1 seq prokMSA_id:13786 AF068799.2 hydrothermal vent clone VC2.1Bac23 2.5.1.1.4.1.2364 OTU 1 seq prokMSA_id:83837 AY263403.1 Thermovibrio ammoniificans str. HB-1 2.5.1.1.4.1.2376 OTU 1 seq prokMSA_id:13779 AF068811.2 hydrothermal vent clone VC2.1Bac48 2.5.1.1.4.1.2389 OTU 1 seq prokMSA_id:13787 AF068800.2 hydrothermal vent clone VC2.1Bac24 2.5.1.1.4.1.2442 OTU 6 seqs prokMSA_id:13782 AF068784.2 hydrothermal vent clone VC2.1Bac2 prokMSA_id:13783 AF068785.1 hydrothermal vent clone VC2.1Bac3 prokMSA_id:13784 AF068787.2 hydrothermal vent clone VC2.1Bac5 prokMSA_id:13785 AF068793.2 hydrothermal vent clone VC2.1Bac13 prokMSA_id:13788 AF068808.2 hydrothermal vent clone VC2.1Bac34 prokMSA_id:85051 AJ507320.2 Desulfurobacterium crinifex str. NE1206 FK10 2.5.1.1.4.1.2510 OTU 2 seqs prokMSA_id:26307 AJ132736.1 hydrothermal vent clone CHA3-27 prokMSA_id:39086 AJ132733.1 hydrothermal vent clone CHA3-117 2.5.1.1.4.1.2524 OTU 1 seq prokMSA_id:49867 AF469394.1 clone 33-PA42B99 2.5.1.1.4.2 sf_2 2 seqs 2.5.1.1.4.2.41 OTU 2 seqs prokMSA_id:1251 U05662.1 hot spring clone EM 19 prokMSA_id:16693 AF352537.1 hot spring clone BH81 2.5.1.1.4.3 sf_3 1 seq 2.5.1.1.4.3.5868 OTU 1 seq prokMSA_id:2638 AF068794.3 hydrothermal vent clone VC2.1Bac16 2.50 Thermotogae 42 seqs 2.50.1 Thermotogae 42 seqs 2.50.1.1 Thermotogales 42 seqs 2.50.1.1.1 Thermotogaceae 42 seqs 2.50.1.1.1.1 sf_4 32 seqs 2.50.1.1.1.1.346 OTU 5 seqs prokMSA_id:1231 AB024932.1 Thermosipho japonicus prokMSA_id:40837 AJ272022.2 Thermosipho geolei prokMSA_id:42520 AF231727.1 Thermosipho sp. TBA5 prokMSA_id:50206 AJ272023.1 Thermosipho sp. DSM 6568 prokMSA_id:89466 AB107770.1 Thermosipho sp. str. FD1 2.50.1.1.1.1.51 OTU 3 seqs prokMSA_id:72302 AJ419874.1 Thermosipho sp. str. MV1063 prokMSA_id:110424 AJ874306.1 continuous enrichment hydrothermal black chimney clone 609 prokMSA_id:110938 AJ874314.1 continuous enrichment hydrothermal black chimney clone 840 2.50.1.1.1.1.573 OTU 13 seqs prokMSA_id:1236 M21774.1 Thermotoga maritima prokMSA_id:24284 AJ401021.1 Thermotoga maritima str. FJSS3-B.1 prokMSA_id:27647 AJ401019.1 Thermotoga sp. str. RQ2 prokMSA_id:32773 AJ401020.1 Thermotoga neapolitana str. LA10 prokMSA_id:35101 AJ401016.1 Thermotoga neapolitana str. NES prokMSA_id:40929 AJ401023.1 Thermotoga sp. str. RQ7 prokMSA_id:41353 AB039768.1 Thermotoga neapolitana prokMSA_id:46327 AB027017.1 Thermotoga naphthophila RKU-10 prokMSA_id:48407 AB027016.1 Thermotoga petrophila RKU-1 prokMSA_id:49474 NC_000853.1 Thermotoga maritima MSB8 prokMSA_id:50916 AJ401022.1 Thermotoga sp. str. SG1 prokMSA_id:70547 AJ401024.1 Thermotoga neapolitana str. LA4 prokMSA_id:72408 AJ401017.1 Thermotoga maritima str. SL7 2.50.1.1.1.1.587 OTU 3 seqs prokMSA_id:1233 U22664.1 "Thermotoga subterranea" prokMSA_id:1234 X80790.1 Thermotoga elfii prokMSA_id:62474 AF355615.1 Thermotoga lettingae str. TMO 2.50.1.1.1.1.732 OTU 1 seq prokMSA_id:1223 AJ237665.2 Caldotoga fontana str. B4 2.50.1.1.1.1.735 OTU 1 seq prokMSA_id:1227 Z49117.1 Fervidobacterium gondwanense 2.50.1.1.1.1.780 OTU 2 seqs prokMSA_id:18702 AF434670.1 Fervidobacterium islandicum str. AW-1 prokMSA_id:32030 AF255593.1 hot spring clone SRI-251 2.50.1.1.1.1.783 OTU 1 seq prokMSA_id:1230 Z70248.1 Thermosipho melanesiensis 2.50.1.1.1.1.804 OTU 1 seq prokMSA_id:1235 U89768.1 Thermotoga hypogea str. SEBR 7054 2.50.1.1.1.1.819 OTU 1 seq prokMSA_id:83498 AF491334.1 Thermosipho ferriphilus str. GB21 2.50.1.1.1.1.971 OTU 1 seq prokMSA_id:38910 AB039769.1 Thermotoga thermarum str. DSM 5069 2.50.1.1.1.2 sf_5 1 seq 2.50.1.1.1.2.743 OTU 1 seq prokMSA_id:79590 AJ431248.1 Thermotogales str. BHI80-139 2.50.1.1.1.3 sf_7 9 seqs 2.50.1.1.1.3.238 OTU 1 seq prokMSA_id:79381 AJ431249.1 Thermotogales str. Dex60-32 2.50.1.1.1.3.56 OTU 2 seqs prokMSA_id:1218 L10658.1 Geotoga petraea prokMSA_id:1219 L10659.1 Geotoga subterranea 2.50.1.1.1.3.729 OTU 1 seq prokMSA_id:1220 AJ250439.1 Marinitoga camini MV1075 2.50.1.1.1.3.809 OTU 4 seqs prokMSA_id:1216 Y15479.1 Petrotoga mobilis prokMSA_id:17828 AJ311702.1 Petrotoga siberica prokMSA_id:51557 AJ311703.1 Petrotoga olearia prokMSA_id:69492 AY125964.1 Petrotoga mexicana str. Met-12; DSM 14811; CIP 107371 2.50.1.1.1.3.917 OTU 1 seq prokMSA_id:66261 AF509468.1 Geotoga aestuarianus str. T3B 2.51 TM6 9 seqs 2.51.1 Unclassified 9 seqs 2.51.1.1 Unclassified 9 seqs 2.51.1.1.1 Unclassified 9 seqs 2.51.1.1.1.1 sf_1 9 seqs 2.51.1.1.1.1.10203 OTU 1 seq prokMSA_id:61498 AY043739.1 forest soil clone NOS7.2WL 2.51.1.1.1.1.10372 OTU 2 seqs prokMSA_id:29910 AF255643.1 sludge clone Ebpr8 prokMSA_id:33441 AF255637.1 sludge clone Ebpr6 2.51.1.1.1.1.9803 OTU 1 seq prokMSA_id:65674 AF507715.1 forest soil clone S1204 2.51.1.1.1.1.9834 OTU 1 seq prokMSA_id:10543 X97099.1 peat bog clone TM6 2.51.1.1.1.1.9895 OTU 1 seq prokMSA_id:65675 AF507714.1 forest soil clone S1198 2.51.1.1.1.1.9914 OTU 3 seqs prokMSA_id:10536 U81641.2 anaerobic sludge clone vadinBA07 prokMSA_id:10538 AJ009448.1 chlorobenzene-degrading consortium clone SJA-4 prokMSA_id:50582 AJ387898.1 TCB-dechlorinating consortium? clone C1-3 2.52 TM7 63 seqs 2.52.1 SBR2060 1 seq 2.52.1.1 Unclassified 1 seq 2.52.1.1.1 Unclassified 1 seq 2.52.1.1.1.1 sf_15 1 seq 2.52.1.1.1.1.3093 OTU 1 seq prokMSA_id:45149 AF268999.1 lab-scale sludge clone SBR2060 2.52.2 TM7-1 6 seqs 2.52.2.1 Unclassified 6 seqs 2.52.2.1.1 Unclassified 6 seqs 2.52.2.1.1.1 sf_1 6 seqs 2.52.2.1.1.1.3642 OTU 1 seq prokMSA_id:49147 AF268997.1 lab-scale sludge clone SBR2004 2.52.2.1.1.1.3664 OTU 1 seq prokMSA_id:32738 AF268996.1 lab-scale sludge clone SBR1071 2.52.2.1.1.1.3746 OTU 1 seq prokMSA_id:30464 AF269000.1 lab-scale sludge clone SBR2013 2.52.2.1.1.1.3771 OTU 1 seq prokMSA_id:14906 AF145815.1 metal-contaminated soil clone K20-12 2.52.2.1.1.1.3775 OTU 1 seq prokMSA_id:14438 AF145827.1 metal-contaminated soil clone K20-27 2.52.2.1.1.1.3923 OTU 1 seq prokMSA_id:14692 AB015558.1 deep-sea sediment clone BD4-8 2.52.3 TM7-2 1 seq 2.52.3.1 Unclassified 1 seq 2.52.3.1.1 Unclassified 1 seq 2.52.3.1.1.1 sf_1 1 seq 2.52.3.1.1.1.5228 OTU 1 seq prokMSA_id:37526 AF268994.1 full-scale sludge clone GC1 2.52.4 TM7-3 16 seqs 2.52.4.1 Unclassified 16 seqs 2.52.4.1.1 Unclassified 16 seqs 2.52.4.1.1.1 sf_1 16 seqs 2.52.4.1.1.1.2697 OTU 2 seqs prokMSA_id:86240 AY231316.1 wastewater clone ER1_16 prokMSA_id:100865 AJ576410.1 midgut homogenate Pachnoda ephippiata larva clone PeM47 2.52.4.1.1.1.2917 OTU 1 seq prokMSA_id:65697 AF507686.1 arid soil clone C026 2.52.4.1.1.1.2940 OTU 1 seq prokMSA_id:22963 AF268998.1 lab-scale sludge clone SBR2096 2.52.4.1.1.1.2982 OTU 1 seq prokMSA_id:14203 AF125204.1 oral cavity clone AH040 2.52.4.1.1.1.2985 OTU 1 seq prokMSA_id:21239 AY005448.1 oral cavity clone BS003 2.52.4.1.1.1.3044 OTU 3 seqs prokMSA_id:65413 AF513108.1 activated sludge foam clone 8A prokMSA_id:65418 AF513103.1 activated sludge foam clone 734 prokMSA_id:72510 AF513104.1 activated sludge foam clone 75 2.52.4.1.1.1.3081 OTU 1 seq prokMSA_id:17873 AF445701.1 travertine hot spring clone SM1G12 2.52.4.1.1.1.3145 OTU 1 seq prokMSA_id:70379 AF385520.1 oral clone DR034 2.52.4.1.1.1.3151 OTU 1 seq prokMSA_id:65419 AF513102.1 activated sludge foam clone 71 2.52.4.1.1.1.7791 OTU 1 seq prokMSA_id:34261 AJ318200.1 Waste-gas biofilter clone BIxi1 2.52.4.1.1.1.7869 OTU 1 seq prokMSA_id:39805 AF385500.1 subgingival plaque clone EW055 2.52.4.1.1.1.8040 OTU 1 seq prokMSA_id:72347 AY005446.1 oral cavity clone BE109 2.52.4.1.1.1.8155 OTU 1 seq prokMSA_id:59570 AY134895.1 TM7 phylum sp. oral clone EW086 2.52.5 Unclassified 39 seqs 2.52.5.1 Unclassified 39 seqs 2.52.5.1.1 Unclassified 39 seqs 2.52.5.1.1.1 sf_1 39 seqs 2.52.5.1.1.1.2332 OTU 1 seq prokMSA_id:66555 AY100526.1 clone cvf65091 2.52.5.1.1.1.2352 OTU 2 seqs prokMSA_id:27652 AF269023.1 obtained full-scale sewage treatment plant clone NoosaAW44 prokMSA_id:47626 AF269007.1 obtained full-scale sewage treatment plant and sequenced Brigitte Pertschy clone TM7LH12 2.52.5.1.1.1.2465 OTU 1 seq prokMSA_id:13653 U68591.1 Amazon clone M4 2.52.5.1.1.1.2472 OTU 1 seq prokMSA_id:13698 AF125206.1 oral cavity clone I025 2.52.5.1.1.1.2734 OTU 2 seqs prokMSA_id:22919 AF269027.1 obtained full-scale sewage treatment plant clone NoosaAW40 prokMSA_id:33869 AF269014.1 obtained full-scale sewage treatment plant clone NoosaAW21 2.52.5.1.1.1.2935 OTU 2 seqs prokMSA_id:16614 AF385568.1 purified crevicular epithelial cells clone BU080 sp. prokMSA_id:81990 AY144354.1 human subgingival crevice clone SBG2 2.52.5.1.1.1.3025 OTU 1 seq prokMSA_id:81216 AB100499.1 termite gut clone Rs-045 2.52.5.1.1.1.3101 OTU 1 seq prokMSA_id:34534 AF269025.1 obtained full-scale sewage treatment plant clone NoosaAW91 2.52.5.1.1.1.3255 OTU 2 seqs prokMSA_id:29825 AF269015.1 obtained full-scale sewage treatment plant clone NoosaAW16 prokMSA_id:52292 AF269013.1 obtained full-scale sewage treatment plant clone NoosaAW57 2.52.5.1.1.1.3256 OTU 1 seq prokMSA_id:26493 AF269020.1 obtained full-scale sewage treatment plant clone NoosaAW69 2.52.5.1.1.1.3338 OTU 2 seqs prokMSA_id:28796 AF269017.1 obtained full-scale sewage treatment plant clone NoosaAW12 prokMSA_id:71763 AF269021.1 obtained full-scale sewage treatment plant clone NoosaAW79 2.52.5.1.1.1.3464 OTU 1 seq prokMSA_id:34290 AF269008.1 obtained full-scale sewage treatment plant and sequenced Brigitte Pertschy clone TM7LH17 2.52.5.1.1.1.3625 OTU 1 seq prokMSA_id:22135 AF145807.1 Metal-contaminated soil clone K20-03 2.52.5.1.1.1.3679 OTU 4 seqs prokMSA_id:83017 AY274155.1 gold mine tailings clone D37 prokMSA_id:84507 AY274123.1 gold mine tailings clone D113 prokMSA_id:86567 AY274159.1 gold mine tailings clone D41 prokMSA_id:86668 AY274161.1 gold mine tailings clone D45 2.52.5.1.1.1.3710 OTU 1 seq prokMSA_id:29374 AF269026.1 obtained full-scale sewage treatment plant clone NoosaAW93 2.52.5.1.1.1.3841 OTU 1 seq prokMSA_id:23156 AF422675.1 clone d152 2.52.5.1.1.1.3847 OTU 1 seq prokMSA_id:18919 AJ252709.1 Potato plant root RC-III-8 () clone RC-III-8 2.52.5.1.1.1.3888 OTU 1 seq prokMSA_id:70010 AF269006.1 obtained full-scale sewage treatment plant and sequenced Brigitte Pertschy clone TM7LH20 2.52.5.1.1.1.4981 OTU 1 seq prokMSA_id:3566 X97111.1 TM7 2.52.5.1.1.1.4988 OTU 1 seq prokMSA_id:3568 U68600.1 Amazon clone M13 2.52.5.1.1.1.5014 OTU 1 seq prokMSA_id:16748 AF269005.1 obtained full-scale sewage treatment plant and sequenced Brigitte Pertschy clone TM7LH15 2.52.5.1.1.1.5061 OTU 3 seqs prokMSA_id:17120 AF269018.1 obtained full-scale sewage treatment plant clone NoosaAW13 prokMSA_id:46000 AF269010.1 obtained full-scale sewage treatment plant clone NoosaAW67 prokMSA_id:49063 AF269012.1 obtained full-scale sewage treatment plant clone NoosaAW56 2.52.5.1.1.1.5177 OTU 4 seqs prokMSA_id:21216 AF337880.2 gold mine clone D25 prokMSA_id:40620 AF337876.2 gold mine clone D20 prokMSA_id:44180 AF337874.2 gold mine clone D51 prokMSA_id:85251 AY274145.1 gold mine tailings clone D140 2.52.5.1.1.1.8125 OTU 2 seqs prokMSA_id:23049 AF269024.1 obtained full-scale sewage treatment plant clone NoosaAW70 prokMSA_id:26921 AF269019.1 obtained full-scale sewage treatment plant clone NoosaAW33 2.52.5.1.1.1.9511 OTU 1 seq prokMSA_id:21860 AF269001.1 lab-scale sludge clone SBR2113 2.53 Unclassified 511 seqs 2.53.1 Unclassified 511 seqs 2.53.1.1 Unclassified 511 seqs 2.53.1.1.1 Unclassified 511 seqs 2.53.1.1.1.1 sf_100 1 seq 2.53.1.1.1.1.8681 OTU 1 seq prokMSA_id:34452 AF323265.1 bioreactor processing inorganic sulfide and mercaptans isolate str. W5P-1 2.53.1.1.1.10 sf_10 1 seq 2.53.1.1.1.10.2328 OTU 1 seq prokMSA_id:66114 AB074938.1 G+C Gram-positive clone:KU8 clone KU8 2.53.1.1.1.11 sf_110 2 seqs 2.53.1.1.1.11.1439 OTU 1 seq prokMSA_id:11332 AF050578.1 contaminated aquifer clone WCHA1-48 2.53.1.1.1.11.1453 OTU 1 seq prokMSA_id:11334 AF050579.1 contaminated aquifer clone WCHA1-78 2.53.1.1.1.12 sf_111 1 seq 2.53.1.1.1.12.509 OTU 1 seq prokMSA_id:23789 AF352540.1 Black Pool 85#C sediment West Thumb Geyser Basin Yellowstone National Park clone BH4-63 2.53.1.1.1.13 sf_112 1 seq 2.53.1.1.1.13.948 OTU 1 seq prokMSA_id:1798 AF013565.2 Uncultivated soil S118 clone 2.53.1.1.1.14 sf_113 1 seq 2.53.1.1.1.14.749 OTU 1 seq prokMSA_id:46816 AF224842.1 clone Car112fc 2.53.1.1.1.15 sf_114 1 seq 2.53.1.1.1.15.5996 OTU 1 seq prokMSA_id:2535 AF087081.1 clone MK24 2.53.1.1.1.16 sf_117 20 seqs 2.53.1.1.1.16.10211 OTU 1 seq prokMSA_id:10676 AF146242.1 clone CLEAR-19 2.53.1.1.1.16.4660 OTU 1 seq prokMSA_id:46836 AF424470.1 planctomycete clone MERTZ_2CM_307 2.53.1.1.1.16.4716 OTU 1 seq prokMSA_id:34936 AF424466.1 planctomycete clone MERTZ_2CM_236 2.53.1.1.1.16.4727 OTU 1 seq prokMSA_id:26861 AF424461.1 planctomycete clone MERTZ_2CM_85 2.53.1.1.1.16.4730 OTU 1 seq prokMSA_id:19648 AF424471.1 planctomycete clone MERTZ_2CM_312 2.53.1.1.1.16.4765 OTU 1 seq prokMSA_id:22015 AF424475.1 planctomycete clone MERTZ_0CM_311 2.53.1.1.1.16.4848 OTU 1 seq prokMSA_id:18708 AF424458.1 planctomycete clone MERTZ_2CM_25 2.53.1.1.1.16.4851 OTU 1 seq prokMSA_id:17699 AF424490.1 planctomycete clone MERTZ_21CM_189 2.53.1.1.1.16.4861 OTU 1 seq prokMSA_id:26033 AF424481.1 planctomycete clone MERTZ_21CM_35 2.53.1.1.1.16.4864 OTU 1 seq prokMSA_id:45322 AF424462.1 planctomycete clone MERTZ_2CM_102 2.53.1.1.1.16.4904 OTU 1 seq prokMSA_id:19319 AF424472.1 planctomycete clone MERTZ_2CM_313 2.53.1.1.1.16.4905 OTU 1 seq prokMSA_id:40976 AF424457.1 planctomycete clone MERTZ_2CM_10 2.53.1.1.1.16.4918 OTU 1 seq prokMSA_id:2797 AF142804.1 clone ACE-29 2.53.1.1.1.16.4920 OTU 1 seq prokMSA_id:43304 AF424488.1 planctomycete clone MERTZ_21CM_155 2.53.1.1.1.16.4923 OTU 1 seq prokMSA_id:33421 AF424498.1 planctomycete clone MERTZ_21CM_298 2.53.1.1.1.16.4929 OTU 1 seq prokMSA_id:34497 AF424495.1 planctomycete clone MERTZ_21CM_249 2.53.1.1.1.16.4950 OTU 1 seq prokMSA_id:20818 AF424460.1 planctomycete clone MERTZ_2CM_77 2.53.1.1.1.16.4952 OTU 1 seq prokMSA_id:28302 AF424494.1 planctomycete clone MERTZ_21CM_239 2.53.1.1.1.16.9686 OTU 1 seq prokMSA_id:20650 AF424493.1 planctomycete clone MERTZ_21CM_213 2.53.1.1.1.16.9726 OTU 1 seq prokMSA_id:48488 AF424489.1 planctomycete clone MERTZ_21CM_160 2.53.1.1.1.17 sf_119 20 seqs 2.53.1.1.1.17.316 OTU 1 seq prokMSA_id:1750 AF013524.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.53.1.1.1.17.6338 OTU 8 seqs prokMSA_id:3693 AF013545.2 volcanic cinder field Sunset Crater Arizona clone prokMSA_id:3694 AF013546.2 volcanic cinder field Sunset Crater Arizona clone prokMSA_id:65811 AF507522.1 pinyon-juniper forest soil clone S088 prokMSA_id:65831 AF507501.1 pinyon-juniper forest soil clone S0119 prokMSA_id:65838 AF507495.1 pinyon-juniper forest soil clone S0109 prokMSA_id:65845 AF507483.1 pinyon-juniper forest soil clone S061 prokMSA_id:65847 AF507480.1 pinyon-juniper forest soil clone S055 prokMSA_id:65855 AF507473.1 pinyon-juniper forest soil clone S032 2.53.1.1.1.17.6431 OTU 1 seq prokMSA_id:74836 AJ232839.1 rhizosphere soil Lolium perenne clone LRS13 2.53.1.1.1.17.6448 OTU 1 seq prokMSA_id:3687 AF013521.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.53.1.1.1.17.6449 OTU 1 seq prokMSA_id:3689 AF013532.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.53.1.1.1.17.6451 OTU 1 seq prokMSA_id:3690 AF013540.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.53.1.1.1.17.6452 OTU 1 seq prokMSA_id:3695 AF013568.2 Uncultivated soil S126 clone 2.53.1.1.1.17.659 OTU 1 seq prokMSA_id:1793 AF013523.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.53.1.1.1.17.817 OTU 1 seq prokMSA_id:1772 AF013553.2 volcanic cinder field Sunset Crater Arizona clone 2.53.1.1.1.17.872 OTU 1 seq prokMSA_id:1784 AF013526.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.53.1.1.1.17.874 OTU 1 seq prokMSA_id:1785 AF013564.2 Uncultivated soil S117 clone 2.53.1.1.1.17.916 OTU 1 seq prokMSA_id:1792 AF013516.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.53.1.1.1.17.929 OTU 1 seq prokMSA_id:1794 AF013542.2 volcanic cinder field Sunset Crater Arizona clone 2.53.1.1.1.18 sf_122 1 seq 2.53.1.1.1.18.6411 OTU 1 seq prokMSA_id:48719 AF469391.1 clone 33-PA26B99 2.53.1.1.1.19 sf_123 1 seq 2.53.1.1.1.19.195 OTU 1 seq prokMSA_id:1731 AF142924.1 clone PENDANT-12 2.53.1.1.1.2 sf_102 1 seq 2.53.1.1.1.2.4755 OTU 1 seq prokMSA_id:2910 L10943.1 Marine sp. (aggregate agg27) generated fragment 2.53.1.1.1.20 sf_124 1 seq 2.53.1.1.1.20.10581 OTU 1 seq prokMSA_id:11167 Z93997.1 clone T81 2.53.1.1.1.21 sf_125 1 seq 2.53.1.1.1.21.5003 OTU 1 seq prokMSA_id:40684 AB027236.1 Gymnodinium mikimotoi str. G303ax-2 2.53.1.1.1.22 sf_126 2 seqs 2.53.1.1.1.22.296 OTU 2 seqs prokMSA_id:30852 AJ431300.1 rhizosphere extract clone 1_29a prokMSA_id:37435 AJ252653.1 Agricultural soil SC-I-74 () clone SC-I-74 2.53.1.1.1.23 sf_127 1 seq 2.53.1.1.1.23.4664 OTU 1 seq prokMSA_id:2896 AF013549.2 volcanic cinder field Sunset Crater Arizona clone 2.53.1.1.1.24 sf_128 1 seq 2.53.1.1.1.24.831 OTU 1 seq prokMSA_id:1248 AB011350.1 clone: TUG22 clone TUG22 2.53.1.1.1.25 sf_131 1 seq 2.53.1.1.1.25.4842 OTU 1 seq prokMSA_id:3047 X97112.1 TM5 2.53.1.1.1.26 sf_132 1 seq 2.53.1.1.1.26.9820 OTU 1 seq prokMSA_id:79593 AY187357.1 drinking-water biofilm clone csbio160144 2.53.1.1.1.27 sf_133 1 seq 2.53.1.1.1.27.6041 OTU 1 seq prokMSA_id:40092 AF417900.1 antarctic soil clone bh3.26 2.53.1.1.1.28 sf_134 1 seq 2.53.1.1.1.28.899 OTU 1 seq prokMSA_id:1255 AF142903.1 clone ORGANIC-1 2.53.1.1.1.29 sf_138 1 seq 2.53.1.1.1.29.776 OTU 1 seq prokMSA_id:70372 AY114315.1 anoxic marine sediment clone LD1-PA21 2.53.1.1.1.3 sf_103 1 seq 2.53.1.1.1.3.4974 OTU 1 seq prokMSA_id:3452 X74006.1 Prototheca zopfii str. SAG 263-1a 2.53.1.1.1.30 sf_139 1 seq 2.53.1.1.1.30.6609 OTU 1 seq prokMSA_id:3821 AF142845.1 clone BURTON-26 2.53.1.1.1.31 sf_140 1 seq 2.53.1.1.1.31.6355 OTU 1 seq prokMSA_id:77048 AJ519640.1 uranium mill tailings soil clone Sh765B-AG-82 2.53.1.1.1.32 sf_141 1 seq 2.53.1.1.1.32.128 OTU 1 seq prokMSA_id:36687 AY037620.1 soil clone S102 2.53.1.1.1.33 sf_142 1 seq 2.53.1.1.1.33.8895 OTU 1 seq prokMSA_id:54984 AF211139.1 Candidatus Carsonella ruddii 2.53.1.1.1.34 sf_144 1 seq 2.53.1.1.1.34.6525 OTU 1 seq prokMSA_id:44594 AF445708.1 spirochete clone SM2A10 2.53.1.1.1.35 sf_145 2 seqs 2.53.1.1.1.35.1035 OTU 2 seqs prokMSA_id:75709 AY164423.1 hypersaline anoxic basin; brine interface Discovery Mediterranean Sea clone DLIB-9 prokMSA_id:86139 AY226242.1 brine water Bannock Mediterranean Sea clone BBBB-32 2.53.1.1.1.36 sf_146 1 seq 2.53.1.1.1.36.4403 OTU 1 seq prokMSA_id:16207 AF172882.1 clone D1-11 2.53.1.1.1.37 sf_147 1 seq 2.53.1.1.1.37.5168 OTU 1 seq prokMSA_id:3104 AF050623.1 contaminated aquifer clone WsCH31 2.53.1.1.1.38 sf_148 13 seqs 2.53.1.1.1.38.4968 OTU 1 seq prokMSA_id:3487 L39865.1 Lobochlamys segnis 2.53.1.1.1.38.4970 OTU 1 seq prokMSA_id:69457 AB073108.1 Cryptomonas paramecium str. NIES715 2.53.1.1.1.38.5022 OTU 1 seq prokMSA_id:63818 AF454327.1 plastid clone ML310M-37 2.53.1.1.1.38.5037 OTU 1 seq prokMSA_id:30270 AF146241.1 stramenopile clone CLEAR-18 2.53.1.1.1.38.5062 OTU 2 seqs prokMSA_id:83461 AF497785.1 Coleochaete pulvinata prokMSA_id:86374 AF497784.1 Coleochaete nitellarum 2.53.1.1.1.38.5100 OTU 1 seq prokMSA_id:17082 AF277481.1 Isochrysidales sp. SIC.42345 2.53.1.1.1.38.5110 OTU 1 seq prokMSA_id:3498 X15850.1 Chlamydomonas moewusii 2.53.1.1.1.38.5113 OTU 3 seqs prokMSA_id:33394 AF399866.1 cyanobacterium clone RC4 prokMSA_id:34157 AF399867.1 cyanobacterium clone RC5 prokMSA_id:40423 AF399860.1 cyanobacterium clone OL5 2.53.1.1.1.38.5201 OTU 1 seq prokMSA_id:28368 AY038428.1 glaucocystophycean chloroplast product clone CD5A12 2.53.1.1.1.38.5235 OTU 1 seq prokMSA_id:56317 AB073109.1 Cryptomonas ovata str. NIES274 2.53.1.1.1.39 sf_149 1 seq 2.53.1.1.1.39.3280 OTU 1 seq prokMSA_id:41508 AF226216.1 maize root clone Zmrc174 2.53.1.1.1.4 sf_104 1 seq 2.53.1.1.1.4.10198 OTU 1 seq prokMSA_id:10671 AF142945.1 clone PENDANT-34 2.53.1.1.1.40 sf_150 1 seq 2.53.1.1.1.40.5119 OTU 1 seq prokMSA_id:18107 AF394205.1 Prototheca wickerhamii str. UTEX 1533 2.53.1.1.1.41 sf_153 1 seq 2.53.1.1.1.41.4766 OTU 1 seq prokMSA_id:2916 AF047574.1 Candidate division OP11 clone LGd8 2.53.1.1.1.42 sf_155 4 seqs 2.53.1.1.1.42.9809 OTU 1 seq prokMSA_id:10537 AF159638.1 related to Acidobacterium capsulatum phylum 2.53.1.1.1.42.9830 OTU 1 seq prokMSA_id:10540 AF142793.1 clone ACE-15 2.53.1.1.1.42.9833 OTU 1 seq prokMSA_id:10541 AF146248.1 clone CLEAR-25 2.53.1.1.1.42.9840 OTU 1 seq prokMSA_id:10545 X97103.1 TM10 2.53.1.1.1.43 sf_156 1 seq 2.53.1.1.1.43.4291 OTU 1 seq prokMSA_id:62669 AF507892.1 Mono Lake at depth 35m station 6 July 2000 clone ML635J-21 G+C 2.53.1.1.1.44 sf_158 1 seq 2.53.1.1.1.44.1512 OTU 1 seq prokMSA_id:43920 AB031661.1 actinobacterium clone TIHP368-75 2.53.1.1.1.45 sf_15 2 seqs 2.53.1.1.1.45.10055 OTU 1 seq prokMSA_id:10406 AF142814.1 clone ACE-39 2.53.1.1.1.45.10058 OTU 1 seq prokMSA_id:10407 AF142790.1 clone ACE-9 2.53.1.1.1.46 sf_160 293 seqs 2.53.1.1.1.46.10012 OTU 1 seq prokMSA_id:21406 AF211303.1 brackish water black mud clone MT63 2.53.1.1.1.46.10029 OTU 1 seq prokMSA_id:35807 AF424415.1 G+C Gram-positive clone MERTZ_0CM_200 2.53.1.1.1.46.10053 OTU 2 seqs prokMSA_id:16622 AF424403.1 Nitrospira group clone MERTZ_2CM_68 prokMSA_id:30263 AF424315.1 clone MERTZ_0CM_292 2.53.1.1.1.46.10110 OTU 1 seq prokMSA_id:41991 AF364913.1 clone clB74 2.53.1.1.1.46.1020 OTU 3 seqs prokMSA_id:2678 AF142933.1 clone PENDANT-21 prokMSA_id:2679 AF142932.1 clone PENDANT-20 prokMSA_id:52206 AF424370.1 green sulfur clone MERTZ_2CM_278 2.53.1.1.1.46.1022 OTU 2 seqs prokMSA_id:35554 AF424392.1 green nonsulfur clone MERTZ_0CM_325 prokMSA_id:46319 AF424386.1 green nonsulfur clone MERTZ_2CM_230 2.53.1.1.1.46.10231 OTU 1 seq prokMSA_id:10597 AF027079.1 Candidate division OP6 clone OPS152 2.53.1.1.1.46.10357 OTU 1 seq prokMSA_id:16334 AF194206.1 clone n30r 2.53.1.1.1.46.1038 OTU 1 seq prokMSA_id:29524 AF424396.1 green nonsulfur clone MERTZ_21CM_197 2.53.1.1.1.46.1061 OTU 1 seq prokMSA_id:50483 AF424399.1 green nonsulfur clone MERTZ_21CM_275 2.53.1.1.1.46.108 OTU 1 seq prokMSA_id:25675 AF424514.1 Verrucomicrobia clone MERTZ_21CM_62 2.53.1.1.1.46.1084 OTU 1 seq prokMSA_id:42236 AF376446.1 chicken cecum mucus clone 2.53.1.1.1.46.121 OTU 1 seq prokMSA_id:45285 AF275927.1 clone AB13 2.53.1.1.1.46.129 OTU 1 seq prokMSA_id:1722 AF146238.1 clone CLEAR-14 2.53.1.1.1.46.1390 OTU 1 seq prokMSA_id:46349 AF424428.1 actinobacterium clone MERTZ_21CM_170 2.53.1.1.1.46.14 OTU 1 seq prokMSA_id:30759 AF313495.1 sponge- resistant to medium level copper exposure clone NWCu002 2.53.1.1.1.46.146 OTU 1 seq prokMSA_id:24730 AF424510.1 Verrucomicrobia clone MERTZ_2CM_293 2.53.1.1.1.46.1547 OTU 1 seq prokMSA_id:32487 AF424431.1 actinobacterium clone MERTZ_21CM_319 2.53.1.1.1.46.164 OTU 2 seqs prokMSA_id:25261 AF424325.1 candidate division OP8 clone MERTZ_2CM_108 prokMSA_id:51674 AF424329.1 candidate division OP8 clone MERTZ_21CM_72 2.53.1.1.1.46.1816 OTU 2 seqs prokMSA_id:26994 AF376455.1 chicken cecum mucus clone prokMSA_id:46672 AF376426.1 chicken cecum mucus clone 2.53.1.1.1.46.1914 OTU 1 seq prokMSA_id:41413 AF379693.1 brackish surface water with Mn(II)-oxidizing capacity clone SL22 2.53.1.1.1.46.2 OTU 1 seq prokMSA_id:38904 AF275920.1 clone AA25 2.53.1.1.1.46.226 OTU 3 seqs prokMSA_id:56349 AF507760.1 pinyon-juniper forest soil clone S1146 prokMSA_id:65637 AF507759.1 pinyon-juniper forest soil clone S1145 prokMSA_id:65891 AF507433.1 pinyon-juniper forest soil clone C0200 2.53.1.1.1.46.2314 OTU 1 seq prokMSA_id:33361 AF424379.1 green nonsulfur clone MERTZ_2CM_4 2.53.1.1.1.46.2315 OTU 1 seq prokMSA_id:23743 AF333547.1 clone R177 2.53.1.1.1.46.2321 OTU 1 seq prokMSA_id:24666 AF424387.1 green nonsulfur clone MERTZ_2CM_250 2.53.1.1.1.46.2323 OTU 1 seq prokMSA_id:30149 U86461.1 Sampling site Northwest Pacific Ocean California Current 32deg.32.27'N 121deg21.53'W; 3000 m depth; E. coli alignment positions 537 to 1391 clone pN1-52 2.53.1.1.1.46.2330 OTU 1 seq prokMSA_id:13742 AF142799.1 clone ACE-22 2.53.1.1.1.46.2334 OTU 1 seq prokMSA_id:13673 AF050576.1 contaminated aquifer clone WFeA1-02 2.53.1.1.1.46.2341 OTU 1 seq prokMSA_id:13749 U62842.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB21 2.53.1.1.1.46.2353 OTU 1 seq prokMSA_id:31896 AF333522.1 actinobacterium clone R171 2.53.1.1.1.46.2360 OTU 1 seq prokMSA_id:49727 AF424432.1 actinobacterium clone MERTZ_21CM_395 2.53.1.1.1.46.2363 OTU 1 seq prokMSA_id:41231 AF393781.1 clone DF-1 2.53.1.1.1.46.2378 OTU 1 seq prokMSA_id:23108 AF424306.1 clone MERTZ_2CM_174 2.53.1.1.1.46.2385 OTU 1 seq prokMSA_id:74881 AJ519646.1 uranium mill tailings soil clone Sh765B-AG-111 2.53.1.1.1.46.2396 OTU 1 seq prokMSA_id:28770 AF424390.1 green nonsulfur clone MERTZ_0CM_109 2.53.1.1.1.46.2401 OTU 1 seq prokMSA_id:42208 AF142946.1 clone PENDANT-35 2.53.1.1.1.46.2425 OTU 1 seq prokMSA_id:31352 AF224860.1 clone Car147fc 2.53.1.1.1.46.2428 OTU 1 seq prokMSA_id:16981 AF058005.1 PCB-dechlorinating enrichment 2.53.1.1.1.46.2431 OTU 2 seqs prokMSA_id:79865 AB094812.1 subseafloor sediments Sea Okhotsk clone OHKB2.37 prokMSA_id:79943 AB094830.1 subseafloor sediments Sea Okhotsk clone OHKB2.90 2.53.1.1.1.46.2488 OTU 1 seq prokMSA_id:75600 AJ519647.1 uranium mill tailings soil clone Sh765B-AG-130 2.53.1.1.1.46.2499 OTU 1 seq prokMSA_id:49414 AF211299.1 brackish water black mud clone MT61 2.53.1.1.1.46.2506 OTU 1 seq prokMSA_id:38927 AF146232.1 clone CLEAR-6 2.53.1.1.1.46.2517 OTU 1 seq prokMSA_id:36253 AF424420.1 actinobacterium clone MERTZ_2CM_192 2.53.1.1.1.46.253 OTU 1 seq prokMSA_id:25775 AF424509.1 Verrucomicrobia clone MERTZ_2CM_283 2.53.1.1.1.46.2551 OTU 1 seq prokMSA_id:36910 AF424401.1 green nonsulfur clone MERTZ_21CM_329 2.53.1.1.1.46.2667 OTU 1 seq prokMSA_id:27207 AF376381.1 chicken cecum mucus clone 2.53.1.1.1.46.267 OTU 1 seq prokMSA_id:77958 AJ535741.1 agricultural soil under organic management clone OF20 2.53.1.1.1.46.2820 OTU 1 seq prokMSA_id:48572 AJ428551.1 Pseudobutyrivibrio xylanivorans str. JK 633 2.53.1.1.1.46.2838 OTU 1 seq prokMSA_id:24052 AF376365.1 chicken cecum mucus clone 2.53.1.1.1.46.284 OTU 1 seq prokMSA_id:38885 AB031626.1 green non-sulfur clone TIHP302-40 2.53.1.1.1.46.2863 OTU 1 seq prokMSA_id:49764 AF376416.1 chicken cecum mucus clone 2.53.1.1.1.46.2910 OTU 1 seq prokMSA_id:18897 AF376397.1 chicken cecum mucus clone 2.53.1.1.1.46.2930 OTU 1 seq prokMSA_id:58017 AB094154.1 feces adult human clone C-2 2.53.1.1.1.46.3005 OTU 1 seq prokMSA_id:41672 AF376421.1 chicken cecum mucus clone 2.53.1.1.1.46.3043 OTU 1 seq prokMSA_id:45129 AF376407.1 chicken cecum mucus clone 2.53.1.1.1.46.3106 OTU 1 seq prokMSA_id:21556 AF376442.1 chicken cecum mucus clone 2.53.1.1.1.46.320 OTU 1 seq prokMSA_id:1293 AF027041.1 green non-sulfur clone OPT90 2.53.1.1.1.46.321 OTU 1 seq prokMSA_id:1817 AF050547.1 contaminated aquifer clone WCHA1-56 2.53.1.1.1.46.3229 OTU 1 seq prokMSA_id:27193 AF376386.1 chicken cecum mucus clone 2.53.1.1.1.46.333 OTU 2 seqs prokMSA_id:85300 AY274156.1 gold mine tailings clone D39 prokMSA_id:86560 AY274137.1 gold mine tailings clone D131 2.53.1.1.1.46.358 OTU 1 seq prokMSA_id:2756 U62827.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB03 2.53.1.1.1.46.361 OTU 1 seq prokMSA_id:43552 AF328193.1 clone KS52 2.53.1.1.1.46.3737 OTU 1 seq prokMSA_id:15000 AF142855.1 clone BURTON-37 2.53.1.1.1.46.379 OTU 1 seq prokMSA_id:30457 AF424327.1 candidate division OP8 clone MERTZ_2CM_344 2.53.1.1.1.46.390 OTU 1 seq prokMSA_id:33506 AF424385.1 green nonsulfur clone MERTZ_2CM_217 2.53.1.1.1.46.391 OTU 1 seq prokMSA_id:44715 AF424307.1 clone MERTZ_2CM_163 2.53.1.1.1.46.413 OTU 1 seq prokMSA_id:2711 AF142947.1 clone PENDANT-36 2.53.1.1.1.46.427 OTU 1 seq prokMSA_id:35755 AB056675.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT6 2.53.1.1.1.46.43 OTU 6 seqs prokMSA_id:24750 AJ309598.1 Mexico clone DGGE band P6.2 prokMSA_id:25099 AJ309576.1 Mexico clone P2-C09 prokMSA_id:38613 AJ309579.1 Mexico clone P2-F12 prokMSA_id:52373 AJ309634.1 Mexico clone P5-F05 prokMSA_id:70638 AJ309641.1 Mexico clone P6-B01 prokMSA_id:73176 AJ309597.1 Mexico clone DGGE band P6.1 2.53.1.1.1.46.434 OTU 1 seq prokMSA_id:47701 AB022642.1 SA71 clone 2.53.1.1.1.46.4410 OTU 1 seq prokMSA_id:84131 AB092852.1 acetate-degrading methanogenic consortium clone ALU10 2.53.1.1.1.46.448 OTU 1 seq prokMSA_id:39542 AF224849.1 clone Car120rc 2.53.1.1.1.46.453 OTU 1 seq prokMSA_id:1678 U15118.1 Hydrothermal vent PVB_OTU_9A complete clone PVB_36 2.53.1.1.1.46.469 OTU 1 seq prokMSA_id:38307 AF224823.1 clone Car98rb 2.53.1.1.1.46.473 OTU 1 seq prokMSA_id:17692 AY013651.1 taken downstream landfill clone BVB11 2.53.1.1.1.46.485 OTU 1 seq prokMSA_id:80983 AY193179.1 thermal spring mat clone O1aA90 2.53.1.1.1.46.491 OTU 1 seq prokMSA_id:1535 AF050557.1 contaminated aquifer clone WCHA1-33 2.53.1.1.1.46.493 OTU 1 seq prokMSA_id:1536 AF050558.1 contaminated aquifer clone WCHA1-80 2.53.1.1.1.46.494 OTU 1 seq prokMSA_id:30996 AF424384.1 green nonsulfur clone MERTZ_2CM_197 2.53.1.1.1.46.498 OTU 1 seq prokMSA_id:13849 U68674.1 Amazon clone P47 2.53.1.1.1.46.504 OTU 1 seq prokMSA_id:1539 AF146249.1 clone CLEAR-26 2.53.1.1.1.46.505 OTU 1 seq prokMSA_id:23667 AF259647.1 French Polynesia: Tahiti clone 42 2.53.1.1.1.46.5065 OTU 77 seqs prokMSA_id:3301 AF132792.1 Prochlorothrix hollandica prokMSA_id:3302 AJ007866.1 cyanobacterium clone LD16 prokMSA_id:3306 AJ007907.1 Prochlorothrix hollandica prokMSA_id:7722 M21292.1 Wolbachia persica prokMSA_id:7729 L26084.1 Francisella tularensis prokMSA_id:7731 L26085.1 Francisella philomiragia prokMSA_id:7741 Z22896.1 Francisella tularensis str. FSC 046 fox prokMSA_id:7749 AB001522.1 Ornithodoros moubata symbiote B prokMSA_id:7752 Z21932.1 Francisella tularensis prokMSA_id:8886 AF114508.1 attached marine recovered surface clone 8 prokMSA_id:16288 X86460.1 Alteromonas sp. str. JLN-A240 prokMSA_id:16381 AF114518.1 attached marine recovered depth 400m clone 8 prokMSA_id:17871 AF440707.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-19 prokMSA_id:18855 AF114549.1 free-living marine recovered depth 400m clone 29 prokMSA_id:19130 Y18232.1 Alteromonas macleodii str. CH-518 prokMSA_id:20843 AF114514.1 attached marine recovered depth 400m clone 6 prokMSA_id:21924 AF114611.1 attached marine recovered surface clone 1 prokMSA_id:22584 AF114534.1 free-living marine recovered depth 400m clone 5 prokMSA_id:23222 AF114529.1 attached marine recovered depth 400m clone 22 prokMSA_id:24149 AF354599.1 obtained depth 55m Arctic Ocean (SCICEX 95 cruise) clone Arctic95A-1 prokMSA_id:25139 AF114538.1 free-living marine recovered depth 400m clone 10 prokMSA_id:28985 AY038402.1 clone CD3A8 prokMSA_id:29610 AF114530.1 attached marine recovered depth 400m clone 12 prokMSA_id:29724 AF114546.1 free-living marine recovered depth 400m clone 24 prokMSA_id:32080 AF114527.1 attached marine recovered depth 400m clone 23 prokMSA_id:32745 AB041296.1 clone ECS26 prokMSA_id:33155 AF114516.1 attached marine recovered depth 400m clone 9 prokMSA_id:39121 AF114551.1 free-living marine recovered depth 400m clone 32 prokMSA_id:39820 AF114535.1 free-living marine recovered depth 400m clone 6 prokMSA_id:42124 AY077645.1 clone FD15R prokMSA_id:43475 AF114542.1 free-living marine recovered depth 400m clone 20 prokMSA_id:44342 AF114578.1 attached marine recovered deep chlorophyll maximum depth clone 6 prokMSA_id:45477 AF114580.1 attached marine recovered deep chlorophyll maximum depth clone 8 prokMSA_id:45538 AF114536.1 free-living marine recovered depth 400m clone 7 prokMSA_id:45795 AF114585.1 attached marine recovered deep chlorophyll maximum depth clone 16 prokMSA_id:46323 AB041297.1 clone ECS27 prokMSA_id:47589 AF114543.1 free-living marine recovered depth 400m clone 21 prokMSA_id:52429 AF114513.1 attached marine recovered depth 400m clone 4 prokMSA_id:56398 AF534685.1 Oscillatoria spongeliae 516bg prokMSA_id:59099 AF534693.1 Oscillatoria spongeliae 513bg prokMSA_id:59100 AF534692.1 Oscillatoria spongeliae 519bg prokMSA_id:59101 AF534690.1 Oscillatoria spongeliae 523bg prokMSA_id:59104 AF534688.1 Oscillatoria spongeliae 504bg prokMSA_id:59105 AF534686.1 Oscillatoria spongeliae 511bg prokMSA_id:59106 AF534687.1 Oscillatoria spongeliae 517bg prokMSA_id:59108 AF420446.1 Oscillatoria spongeliae str. 'Dysidea n. sp. aff. granulosa' isolate 512bg prokMSA_id:59110 AF420445.1 Oscillatoria spongeliae str. 518bg prokMSA_id:62493 AF513950.1 Alteromonadaceae clone PH-B21N prokMSA_id:65037 AY095783.1 prokMSA_id:65061 AY095757.1 prokMSA_id:67019 AF497568.1 Aphanocapsa feldmannii prokMSA_id:82787 AY243028.1 Francisella tularensis str. 3523 prokMSA_id:88174 AJ567544.1 deep-sea sediment clone MBMPE26 prokMSA_id:88388 AJ567575.1 deep-sea sediment clone MBAE12 prokMSA_id:88975 AJ564726.1 Alteromonas stellipolaris str. LMG 21862 prokMSA_id:89009 AJ564725.1 Alteromonas stellipolaris str. LMG 21860 prokMSA_id:89590 AJ564724.1 Alteromonas stellipolaris str. LMG 21859 prokMSA_id:89674 AJ564727.1 Alteromonas stellipolaris str. LMG 21863 prokMSA_id:89785 AJ564728.1 Alteromonas stellipolaris str. LMG 21864 prokMSA_id:90316 AJ564723.1 Alteromonas stellipolaris str. LMG 21856 prokMSA_id:90600 AJ567566.1 deep-sea sediment clone MBMPE56 prokMSA_id:94739 AY371182.1 USA: Liohi submarine volcano Hawaii clone L36_Loihi prokMSA_id:98972 AY615501.1 Oscillatoria spongeliae prokMSA_id:99124 AY615502.1 Oscillatoria spongeliae prokMSA_id:99276 AY615503.1 Oscillatoria spongeliae prokMSA_id:99430 AY615504.1 Oscillatoria spongeliae prokMSA_id:99590 AY615505.1 Oscillatoria spongeliae prokMSA_id:99739 AY615506.1 Oscillatoria spongeliae prokMSA_id:99899 AY615507.1 Oscillatoria spongeliae prokMSA_id:100061 AY615508.1 Oscillatoria spongeliae prokMSA_id:100215 AY615509.1 Oscillatoria spongeliae prokMSA_id:100610 AY515433.1 bulk water German Wadden Sea May 1999 isolate str. GWS-BW-H7M prokMSA_id:102415 AJ698863.1 Francisella tularensis subsp. mediasiatica str. FSC 147 prokMSA_id:102736 AJ698865.1 Francisella subsp. tularensis str. FSC 043 prokMSA_id:106840 AY553295.1 Salinimonas chungwhensis str. BH030046 prokMSA_id:106901 AF534691.1 Oscillatoria spongeliae 503bg prokMSA_id:107257 AY345478.1 Lake Kauhako water isolate str. K3 2.53.1.1.1.46.513 OTU 1 seq prokMSA_id:75928 AJ519644.1 uranium mill tailings soil clone Sh765B-AG-22 2.53.1.1.1.46.520 OTU 2 seqs prokMSA_id:23626 AF424326.1 candidate division OP8 clone MERTZ_21CM_186 prokMSA_id:35212 AF424328.1 candidate division OP8 clone MERTZ_2CM_346 2.53.1.1.1.46.525 OTU 1 seq prokMSA_id:1544 AF142872.1 clone BURTON-54 2.53.1.1.1.46.526 OTU 1 seq prokMSA_id:1545 AF146236.1 clone CLEAR-12 2.53.1.1.1.46.5273 OTU 1 seq prokMSA_id:2652 AF050546.1 contaminated aquifer clone WCHA1-94 2.53.1.1.1.46.539 OTU 3 seqs prokMSA_id:33164 AJ408101.1 equine large intestine clone DL14 prokMSA_id:44416 AJ408099.1 equine large intestine clone DL12 prokMSA_id:45703 AJ408224.1 equine large intestine clone PL16 2.53.1.1.1.46.557 OTU 1 seq prokMSA_id:82374 AY217438.1 TCE-dechlorinating microbial community clone 9H 2.53.1.1.1.46.5702 OTU 1 seq prokMSA_id:2179 AF018444.1 rumen clone JW15 2.53.1.1.1.46.586 OTU 1 seq prokMSA_id:1543 AJ241016.1 Norway:(Svalbard)Hornsund clone Sva0107a 2.53.1.1.1.46.5923 OTU 1 seq prokMSA_id:43898 AF424371.1 green sulfur clone MERTZ_21CM_53 2.53.1.1.1.46.5975 OTU 2 seqs prokMSA_id:37226 AF424373.1 green sulfur clone MERTZ_21CM_281 prokMSA_id:52416 AF424369.1 green sulfur clone MERTZ_2CM_69 2.53.1.1.1.46.615 OTU 1 seq prokMSA_id:39740 AF424507.1 Verrucomicrobia clone MERTZ_2CM_235 2.53.1.1.1.46.63 OTU 1 seq prokMSA_id:1705 AF050552.1 contaminated aquifer clone WCHA1-39 2.53.1.1.1.46.6332 OTU 3 seqs prokMSA_id:18724 AF224857.1 clone Car129rc prokMSA_id:28340 AF224775.1 clone Car53c prokMSA_id:46975 AF224776.1 clone Car101fb 2.53.1.1.1.46.6336 OTU 1 seq prokMSA_id:22653 AF285616.2 clone Car176f 2.53.1.1.1.46.6337 OTU 1 seq prokMSA_id:63244 AF523980.1 forested wetland clone FW14 2.53.1.1.1.46.6339 OTU 1 seq prokMSA_id:14398 AJ000985.2 soil clone DA040 2.53.1.1.1.46.634 OTU 2 seqs prokMSA_id:49130 AF424400.1 green nonsulfur clone MERTZ_21CM_278 prokMSA_id:52047 AF424380.1 green nonsulfur clone MERTZ_2CM_18 2.53.1.1.1.46.6346 OTU 1 seq prokMSA_id:22758 AF424321.1 clone MERTZ_21CM_187 2.53.1.1.1.46.6349 OTU 3 seqs prokMSA_id:42960 AF440700.1 mixed natural community collected Southern Arctic Ocean (86 11.2' N 176 degrees 50.7' E) at 58m depth on April 27 1995 clone ARCT1-7 prokMSA_id:64945 AY095797.1 prokMSA_id:64952 AY095796.1 2.53.1.1.1.46.6360 OTU 1 seq prokMSA_id:63238 AF523987.1 forested wetland clone FW112 2.53.1.1.1.46.6380 OTU 1 seq prokMSA_id:40302 AF234087.1 Sturt arid-zone soil clone #0319-7B4 2.53.1.1.1.46.6385 OTU 1 seq prokMSA_id:3655 U64576.1 marine plankton clone NH16-16 2.53.1.1.1.46.6387 OTU 1 seq prokMSA_id:3660 X68468.1 Actinomycetales MC 26 2.53.1.1.1.46.6388 OTU 1 seq prokMSA_id:3663 X68466.1 Actinomycetales MC 27 2.53.1.1.1.46.6394 OTU 1 seq prokMSA_id:3668 AF165269.1 Rainforest soil HRS-47 clone 2.53.1.1.1.46.6396 OTU 1 seq prokMSA_id:3669 AF013561.2 Uncultivated soil S113 clone 2.53.1.1.1.46.6400 OTU 1 seq prokMSA_id:32551 AJ252655.1 Agricultural soil SC-I-77 () clone SC-I-77 2.53.1.1.1.46.6401 OTU 1 seq prokMSA_id:75757 AJ519386.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-109 2.53.1.1.1.46.6415 OTU 1 seq prokMSA_id:76572 AJ519369.1 uranium mining waste pile near Johanngeorgenstadt soil clone JG37-AG-39 2.53.1.1.1.46.6430 OTU 2 seqs prokMSA_id:74962 AY164390.1 hypersaline anoxic basin; brine interface Bannock Mediterranean Sea clone BLIB-95 prokMSA_id:75343 AY164336.1 hypersaline anoxic basin; brine interface L'Atalante Mediterranean Sea clone ALIB-11 2.53.1.1.1.46.6434 OTU 1 seq prokMSA_id:3670 U62849.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB29 2.53.1.1.1.46.6435 OTU 1 seq prokMSA_id:3671 U62855.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB38 2.53.1.1.1.46.6439 OTU 1 seq prokMSA_id:3679 AF146230.1 clone CLEAR-4 2.53.1.1.1.46.6456 OTU 5 seqs prokMSA_id:23031 AF424332.1 clone MERTZ_21CM_158 prokMSA_id:30415 AF424301.1 clone MERTZ_2CM_63 prokMSA_id:42369 AF424313.1 clone MERTZ_2CM_351 prokMSA_id:44566 AF424309.1 clone MERTZ_2CM_321 prokMSA_id:59831 AY133356.1 coastal Antarctic sediment clone OB3_30 2.53.1.1.1.46.651 OTU 1 seq prokMSA_id:66905 AJ306801.1 clone SHD-262 2.53.1.1.1.46.6534 OTU 1 seq prokMSA_id:3803 AB011318.1 clone: MUG26 clone MUG26 2.53.1.1.1.46.662 OTU 2 seqs prokMSA_id:1699 AB031629.1 clone TIHP368-03 prokMSA_id:1700 AB031633.1 clone TIHP368-11 2.53.1.1.1.46.665 OTU 1 seq prokMSA_id:63209 AF524017.1 forested wetland clone FW7 2.53.1.1.1.46.666 OTU 1 seq prokMSA_id:63210 AF524016.1 forested wetland clone FW98 2.53.1.1.1.46.692 OTU 1 seq prokMSA_id:37080 AJ297463.1 Svalbard: Hornsund clone Sva0585 2.53.1.1.1.46.6924 OTU 1 seq prokMSA_id:5087 AF146240.1 clone CLEAR-17 2.53.1.1.1.46.7127 OTU 1 seq prokMSA_id:64044 AB087326.1 CF-soil clone CF84 2.53.1.1.1.46.7217 OTU 1 seq prokMSA_id:5728 L35465.1 clone SAR122 2.53.1.1.1.46.725 OTU 1 seq prokMSA_id:80694 AB094926.1 subseafloor sediments Sea Okhotsk clone OHKB9.54 2.53.1.1.1.46.7287 OTU 1 seq prokMSA_id:16401 AF422605.1 clone t035 2.53.1.1.1.46.7303 OTU 1 seq prokMSA_id:37143 AF417907.1 antarctic soil clone bh4.32 2.53.1.1.1.46.7330 OTU 1 seq prokMSA_id:38152 AF323259.1 bioreactor processing inorganic sulfide and mercaptans isolate str. B3P-2 2.53.1.1.1.46.74 OTU 1 seq prokMSA_id:1708 AF050554.1 contaminated aquifer clone WFeA1-35 2.53.1.1.1.46.7413 OTU 1 seq prokMSA_id:4536 AF159662.1 related to 2.53.1.1.1.46.7444 OTU 1 seq prokMSA_id:39288 AF323254.1 bioreactor processing inorganic sulfide and mercaptans isolate str. B1G-1A 2.53.1.1.1.46.773 OTU 12 seqs prokMSA_id:1721 AF186414.1 sponge symbiont clone PAUC38fp prokMSA_id:17007 AF434953.1 sponge symbiont RSWS25 clone prokMSA_id:17935 AF434962.1 sponge symbiont RSWS7 clone prokMSA_id:18334 AF434957.1 sponge symbiont RSWS3 clone prokMSA_id:19886 AF434939.1 sponge symbiont RSWS9 clone prokMSA_id:33722 AF434949.1 sponge symbiont RSWS20 clone prokMSA_id:40884 AF434945.1 sponge symbiont RSWS17 clone prokMSA_id:43895 AF434959.1 sponge symbiont RSWS4 clone prokMSA_id:48287 AF434948.1 sponge symbiont RSWS2 clone prokMSA_id:48870 AF186440.1 sponge symbiont clone PAUC55 prokMSA_id:51461 AF186439.1 sponge symbiont clone PAUC54 prokMSA_id:60768 AF186436.1 sponge symbiont clone PAUC49 2.53.1.1.1.46.7767 OTU 2 seqs prokMSA_id:81590 AY193914.1 Mula-Mutha River water clone SB2 prokMSA_id:82219 AY193913.1 Mula-Mutha River water clone SB1 2.53.1.1.1.46.781 OTU 1 seq prokMSA_id:34904 AF328204.1 clone KS67 2.53.1.1.1.46.7836 OTU 1 seq prokMSA_id:30998 AF422671.1 clone d122 2.53.1.1.1.46.7849 OTU 1 seq prokMSA_id:7034 Z93958.1 clone T15 2.53.1.1.1.46.788 OTU 5 seqs prokMSA_id:1288 AF142948.1 clone PENDANT-37 prokMSA_id:23867 AF424383.1 green nonsulfur clone MERTZ_2CM_159 prokMSA_id:26191 AF424398.1 green nonsulfur clone MERTZ_21CM_236 prokMSA_id:36235 AF424394.1 green nonsulfur clone MERTZ_21CM_133 prokMSA_id:56086 AY133370.1 coastal Antarctic sediment clone OB3_58 2.53.1.1.1.46.827 OTU 1 seq prokMSA_id:22225 AJ296574.1 uranium mining mill tailing clone GR/GS-296.II.265 2.53.1.1.1.46.83 OTU 1 seq prokMSA_id:46217 AF424256.1 clone MERTZ_21CM_290 2.53.1.1.1.46.836 OTU 1 seq prokMSA_id:2721 U62857.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB41 2.53.1.1.1.46.8438 OTU 1 seq prokMSA_id:74455 AF333532.1 clone R14 2.53.1.1.1.46.851 OTU 1 seq prokMSA_id:27771 AF424421.1 actinobacterium clone MERTZ_2CM_246 2.53.1.1.1.46.879 OTU 1 seq prokMSA_id:1853 U86489.1 Sampling site subtropical Atlantic near Bermuda; 32 17.38 N 64 deg. 33.65 min. W 1000 m depth clone pB1-114 2.53.1.1.1.46.883 OTU 1 seq prokMSA_id:1856 U68649.1 Amazon clone P16 2.53.1.1.1.46.8891 OTU 2 seqs prokMSA_id:64893 AY095887.1 prokMSA_id:74482 AY095886.1 2.53.1.1.1.46.895 OTU 2 seqs prokMSA_id:84241 AY239543.1 whey-based wastewater clone CARB_ESS_12 prokMSA_id:85574 AY239536.1 whey-based wastewater clone CARB_ESS_5 2.53.1.1.1.46.896 OTU 1 seq prokMSA_id:1859 U68606.1 Amazon clone M19 2.53.1.1.1.46.9094 OTU 1 seq prokMSA_id:35114 AF379688.1 brackish surface water with Mn(II)-oxidizing capacity clone SL6 2.53.1.1.1.46.913 OTU 1 seq prokMSA_id:62549 AJ504586.1 sewage sludge clone 2.53.1.1.1.46.930 OTU 1 seq prokMSA_id:49483 AF424330.1 candidate division OP8 clone MERTZ_21CM_86 2.53.1.1.1.46.933 OTU 1 seq prokMSA_id:41206 AF424395.1 green nonsulfur clone MERTZ_21CM_156 2.53.1.1.1.46.9372 OTU 1 seq prokMSA_id:25702 AF064557.1 Vibrio sp. str. 121 2.53.1.1.1.46.9395 OTU 1 seq prokMSA_id:24993 AF249335.1 Vibrio sp. GIT-14 str. 14 2.53.1.1.1.46.9633 OTU 1 seq prokMSA_id:8802 U85865.1 Marinobacter sp. str. IC180 2.53.1.1.1.46.9672 OTU 1 seq prokMSA_id:24509 AF130847.1 Candidatus Entotheonella palauensis 2.53.1.1.1.46.9736 OTU 2 seqs prokMSA_id:75161 AY150890.1 disturbed surface soil clone GR6 prokMSA_id:75882 AY150895.1 disturbed surface soil clone GR11 2.53.1.1.1.46.9761 OTU 1 seq prokMSA_id:19746 AF422615.1 clone t045 2.53.1.1.1.46.977 OTU 1 seq prokMSA_id:23814 AF424382.1 green nonsulfur clone MERTZ_2CM_137 2.53.1.1.1.46.9843 OTU 1 seq prokMSA_id:10548 U86457.1 Sampling site Northwest Pacific Ocean California Current 32deg.32.27'N 121deg21.53'W; 3000 m depth; E. coli alignment positions 537 to 1391 clone pN1-3 2.53.1.1.1.46.9865 OTU 1 seq prokMSA_id:10778 AF050624.1 contaminated aquifer clone WsCH54 2.53.1.1.1.46.9946 OTU 1 seq prokMSA_id:10770 AF026997.1 clone OPT47 2.53.1.1.1.46.9948 OTU 1 seq prokMSA_id:10772 AF027000.1 clone OPT56 2.53.1.1.1.46.997 OTU 1 seq prokMSA_id:52165 U86458.1 Sampling site Northwest Pacific Ocean California Current 32deg.32.27'N 121deg21.53'W; 3000 m depth; E. coli alignment positions 537 to 1391 clone pN1-33 2.53.1.1.1.46.9973 OTU 1 seq prokMSA_id:70052 AF097826.1 activated sludge clone 49531 2.53.1.1.1.47 sf_161 1 seq 2.53.1.1.1.47.568 OTU 1 seq prokMSA_id:1566 X97110.1 TM18 clone 2.53.1.1.1.48 sf_162 1 seq 2.53.1.1.1.48.2475 OTU 1 seq prokMSA_id:13729 AF050577.1 contaminated aquifer clone WCHA1-37 2.53.1.1.1.49 sf_163 1 seq 2.53.1.1.1.49.10165 OTU 1 seq prokMSA_id:10710 AF146254.1 clone CLEAR-32 2.53.1.1.1.5 sf_105 1 seq 2.53.1.1.1.5.1995 OTU 1 seq prokMSA_id:78429 AY189623.1 Homo sapiens outer ear canal clone EarCan096 2.53.1.1.1.50 sf_164 1 seq 2.53.1.1.1.50.65 OTU 1 seq prokMSA_id:1707 AF050556.1 contaminated aquifer clone WCHA1-89 2.53.1.1.1.51 sf_165 1 seq 2.53.1.1.1.51.1004 OTU 1 seq prokMSA_id:85595 AY221053.1 sediments collected at Charon's Cascade near Echo River October 2000 clone CCM18b 2.53.1.1.1.52 sf_166 2 seqs 2.53.1.1.1.52.4597 OTU 2 seqs prokMSA_id:16112 AF013517.2 Pinyon Pine forest soil near Cosnino Arizona clone prokMSA_id:65710 AF507679.1 pinyon-juniper forest soil clone C06 2.53.1.1.1.53 sf_167 1 seq 2.53.1.1.1.53.3772 OTU 1 seq prokMSA_id:14907 AF146253.1 clone CLEAR-31 2.53.1.1.1.54 sf_21 1 seq 2.53.1.1.1.54.6538 OTU 1 seq prokMSA_id:3808 AF142796.1 clone ACE-19 2.53.1.1.1.55 sf_28 1 seq 2.53.1.1.1.55.10113 OTU 1 seq prokMSA_id:30636 AF289157.1 2.53.1.1.1.56 sf_29 1 seq 2.53.1.1.1.56.750 OTU 1 seq prokMSA_id:74652 AF255601.1 hot spring clone SRI-24 2.53.1.1.1.57 sf_34 2 seqs 2.53.1.1.1.57.4668 OTU 2 seqs prokMSA_id:79860 AY193140.1 marine sediment clone Bol6 prokMSA_id:79995 AY193136.1 marine sediment clone Bol25 2.53.1.1.1.58 sf_37 1 seq 2.53.1.1.1.58.5501 OTU 1 seq prokMSA_id:21755 AY038551.1 Cytophagales clone CD4D9 2.53.1.1.1.59 sf_38 2 seqs 2.53.1.1.1.59.171 OTU 2 seqs prokMSA_id:1302 AF047568.1 Candidate division OP11 clone LGd1 prokMSA_id:1303 AF047569.1 Candidate division OP11 clone LGd15 2.53.1.1.1.6 sf_106 1 seq 2.53.1.1.1.6.243 OTU 1 seq prokMSA_id:52397 AF027097.1 hot spring clone OPB25 2.53.1.1.1.60 sf_40 1 seq 2.53.1.1.1.60.10409 OTU 1 seq prokMSA_id:63202 AF524025.1 forested wetland clone FW9 2.53.1.1.1.61 sf_41 1 seq 2.53.1.1.1.61.306 OTU 1 seq prokMSA_id:1810 AF013519.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.53.1.1.1.62 sf_42 1 seq 2.53.1.1.1.62.9860 OTU 1 seq prokMSA_id:10550 AF050608.1 contaminated aquifer clone WCHA1-16 2.53.1.1.1.63 sf_44 1 seq 2.53.1.1.1.63.3826 OTU 1 seq prokMSA_id:71959 AF269016.1 obtained full-scale sewage treatment plant clone NoosaAW01 2.53.1.1.1.64 sf_45 2 seqs 2.53.1.1.1.64.5672 OTU 2 seqs prokMSA_id:65313 AF422619.1 clone t050 prokMSA_id:65314 AF422602.1 clone t030 2.53.1.1.1.65 sf_48 1 seq 2.53.1.1.1.65.4917 OTU 1 seq prokMSA_id:2869 AF146262.1 clone SCALE-10 2.53.1.1.1.66 sf_49 4 seqs 2.53.1.1.1.66.5974 OTU 2 seqs prokMSA_id:28097 AJ408148.1 equine large intestine clone ML02 prokMSA_id:36936 AJ408077.1 equine large intestine clone CW07 2.53.1.1.1.66.6121 OTU 1 seq prokMSA_id:49622 AJ408153.1 equine large intestine clone ML07 2.53.1.1.1.66.6262 OTU 1 seq prokMSA_id:40059 AF376389.1 chicken cecum mucus clone 2.53.1.1.1.67 sf_50 2 seqs 2.53.1.1.1.67.10391 OTU 1 seq prokMSA_id:48323 AF367485.1 clone VC1.2-cl07 2.53.1.1.1.67.10421 OTU 1 seq prokMSA_id:77916 AB089114.1 termite gut homogenate clone Rs-M28 2.53.1.1.1.68 sf_51 1 seq 2.53.1.1.1.68.1092 OTU 1 seq prokMSA_id:26880 AF469389.1 clone 33-PA134B99 2.53.1.1.1.69 sf_63 1 seq 2.53.1.1.1.69.10547 OTU 1 seq prokMSA_id:20755 AF367497.1 clone VC1.2-cl57 2.53.1.1.1.7 sf_107 1 seq 2.53.1.1.1.7.255 OTU 1 seq prokMSA_id:1450 AJ240996.1 Norway:(Svalbard)Hornsund clone Sva0777 2.53.1.1.1.70 sf_65 1 seq 2.53.1.1.1.70.567 OTU 1 seq prokMSA_id:1565 U62856.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB39 2.53.1.1.1.71 sf_67 1 seq 2.53.1.1.1.71.10326 OTU 1 seq prokMSA_id:74740 AJ289991.1 Germany: Lake Fuchskuhle clone FukuN110 2.53.1.1.1.72 sf_68 7 seqs 2.53.1.1.1.72.1244 OTU 1 seq prokMSA_id:11961 AF146260.1 clone SCALE-8 2.53.1.1.1.72.1631 OTU 1 seq prokMSA_id:49061 AF424410.1 clone MERTZ_2CM_64 2.53.1.1.1.72.1799 OTU 3 seqs prokMSA_id:11869 AF146264.1 clone SCALE-12 prokMSA_id:24466 AF142967.1 clone TAYNAYA-19 prokMSA_id:26571 AF142805.1 clone ACE-30 2.53.1.1.1.72.1976 OTU 2 seqs prokMSA_id:11969 AF142818.1 clone ACE-43 prokMSA_id:36942 AF424413.1 clone MERTZ_2CM_212 2.53.1.1.1.73 sf_70 2 seqs 2.53.1.1.1.73.4258 OTU 1 seq prokMSA_id:63285 AF523934.1 forested wetland clone RCP1-100 2.53.1.1.1.73.6774 OTU 1 seq prokMSA_id:63287 AF523932.1 forested wetland clone RCP1-39 2.53.1.1.1.74 sf_72 6 seqs 2.53.1.1.1.74.363 OTU 1 seq prokMSA_id:1821 AF013514.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.53.1.1.1.74.384 OTU 1 seq prokMSA_id:1829 AF013529.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.53.1.1.1.74.403 OTU 1 seq prokMSA_id:1835 AF013551.2 volcanic cinder field Sunset Crater Arizona clone 2.53.1.1.1.74.415 OTU 1 seq prokMSA_id:49683 AF445127.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc67 2.53.1.1.1.74.450 OTU 1 seq prokMSA_id:1834 AF013528.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.53.1.1.1.74.674 OTU 1 seq prokMSA_id:73082 AF320937.1 Lake Michigan sediment clone LMBA20 2.53.1.1.1.75 sf_73 1 seq 2.53.1.1.1.75.6442 OTU 1 seq prokMSA_id:3619 AF172896.1 clone BOL-130 2.53.1.1.1.76 sf_75 36 seqs 2.53.1.1.1.76.6328 OTU 4 seqs prokMSA_id:3641 AF172898.1 clone BOL-162 prokMSA_id:3643 AF172893.1 clone BOL-116 prokMSA_id:3644 AF172892.1 clone BOL-27 prokMSA_id:3646 AF172887.1 clone BOL-06 2.53.1.1.1.76.6331 OTU 2 seqs prokMSA_id:3620 AF172903.1 clone CA1-01 prokMSA_id:3627 AF172879.1 clone BMS1-37 2.53.1.1.1.76.6369 OTU 1 seq prokMSA_id:3628 AF172878.1 clone BMS1-28 2.53.1.1.1.76.6370 OTU 1 seq prokMSA_id:3629 AF172872.1 clone BMS1-07 2.53.1.1.1.76.6373 OTU 1 seq prokMSA_id:3633 AF172917.1 clone LL-19 2.53.1.1.1.76.6376 OTU 1 seq prokMSA_id:3640 AF172905.1 clone CA1-03 2.53.1.1.1.76.6377 OTU 1 seq prokMSA_id:3642 AF172895.1 clone BOL-126 2.53.1.1.1.76.6379 OTU 1 seq prokMSA_id:3647 AF172886.1 clone BOL-05 2.53.1.1.1.76.6392 OTU 2 seqs prokMSA_id:3602 AF172912.1 clone CA1-183 prokMSA_id:3605 AF172904.1 clone CA1-02 2.53.1.1.1.76.6395 OTU 3 seqs prokMSA_id:3631 AF172919.1 clone LL-22 prokMSA_id:3632 AF172918.1 clone LL-20 prokMSA_id:3634 AF172914.1 clone LL-01 2.53.1.1.1.76.6397 OTU 4 seqs prokMSA_id:3601 AF172915.1 clone LL-02 prokMSA_id:3603 AF172907.1 clone CA1-06 prokMSA_id:3607 AF172899.1 clone BOL-173 prokMSA_id:3612 AF172880.1 clone BMS1-64 2.53.1.1.1.76.6399 OTU 3 seqs prokMSA_id:3637 AF172910.1 clone CA1-114 prokMSA_id:3645 AF172889.1 clone BOL-15 prokMSA_id:3648 AF172881.1 clone BMS1-76 2.53.1.1.1.76.6436 OTU 1 seq prokMSA_id:3608 AF172897.1 clone BOL-134 2.53.1.1.1.76.6437 OTU 1 seq prokMSA_id:3609 AF172890.1 clone BOL-22 2.53.1.1.1.76.6445 OTU 4 seqs prokMSA_id:3622 AF172901.1 clone BOL-177 prokMSA_id:3623 AF172894.1 clone BOL-118 prokMSA_id:3624 AF172891.1 clone BOL-26 prokMSA_id:3626 AF172883.1 clone BOL-01 2.53.1.1.1.76.6447 OTU 1 seq prokMSA_id:3621 AF172902.1 clone BOL-195 2.53.1.1.1.76.6457 OTU 5 seqs prokMSA_id:3599 AF172920.1 clone LL-27 prokMSA_id:3606 AF172900.1 clone BOL-176 prokMSA_id:3611 AF172885.1 clone BOL-04 prokMSA_id:3616 AF172874.1 clone BMS1-11 prokMSA_id:3625 AF172884.1 clone BOL-02 2.53.1.1.1.77 sf_81 2 seqs 2.53.1.1.1.77.1168 OTU 1 seq prokMSA_id:12509 AB008898.1 - 2.53.1.1.1.77.1606 OTU 1 seq prokMSA_id:12510 AB008899.1 - 2.53.1.1.1.78 sf_82 4 seqs 2.53.1.1.1.78.10404 OTU 3 seqs prokMSA_id:22254 AF468766.1 clone 33-FL71B99 prokMSA_id:30424 AF468727.1 clone 33-PA111B99 prokMSA_id:48476 AF468767.1 clone 33-FL127B99 2.53.1.1.1.78.10440 OTU 1 seq prokMSA_id:21582 AF468718.1 clone 33-PA26B98 2.53.1.1.1.79 sf_83 1 seq 2.53.1.1.1.79.9816 OTU 1 seq prokMSA_id:10539 AF142811.1 clone ACE-36 2.53.1.1.1.8 sf_108 1 seq 2.53.1.1.1.8.1073 OTU 1 seq prokMSA_id:41163 AF424408.1 candidate division OP3 clone MERTZ_2CM_315 2.53.1.1.1.80 sf_84 4 seqs 2.53.1.1.1.80.807 OTU 4 seqs prokMSA_id:19671 AF424468.1 planctomycete clone MERTZ_2CM_268 prokMSA_id:27975 AF424463.1 planctomycete clone MERTZ_2CM_127 prokMSA_id:74112 AF424477.1 clone MERTZ_0CM_380 prokMSA_id:84429 AY226283.1 brine water Discovery Mediterranean Sea clone DBBB-136 2.53.1.1.1.81 sf_85 1 seq 2.53.1.1.1.81.12 OTU 1 seq prokMSA_id:1315 AF047571.1 Candidate division OP11 clone LGd9 2.53.1.1.1.82 sf_88 2 seqs 2.53.1.1.1.82.2932 OTU 1 seq prokMSA_id:74315 AF018039.1 clone O8SA 2.53.1.1.1.82.3098 OTU 1 seq prokMSA_id:31451 AF018037.1 clone O815 2.53.1.1.1.83 sf_89 1 seq 2.53.1.1.1.83.9986 OTU 1 seq prokMSA_id:10782 AF142828.1 clone BURTON-8 2.53.1.1.1.84 sf_8 1 seq 2.53.1.1.1.84.4394 OTU 1 seq prokMSA_id:16009 AF013548.2 volcanic cinder field Sunset Crater Arizona clone 2.53.1.1.1.85 sf_91 2 seqs 2.53.1.1.1.85.260 OTU 1 seq prokMSA_id:1457 AF145869.1 Metal-contaminated soil clone K20-81 2.53.1.1.1.85.278 OTU 1 seq prokMSA_id:1458 AF145866.1 Metal-contaminated soil clone K20-78 2.53.1.1.1.86 sf_92 2 seqs 2.53.1.1.1.86.9999 OTU 2 seqs prokMSA_id:78071 AB089068.1 termite gut homogenate clone Rs-J96 prokMSA_id:81819 AB100495.1 termite gut clone Rs-010 2.53.1.1.1.87 sf_93 1 seq 2.53.1.1.1.87.925 OTU 1 seq prokMSA_id:41280 AF254404.1 4MB-degrading consortium clone UASB_TL26 2.53.1.1.1.88 sf_94 1 seq 2.53.1.1.1.88.1185 OTU 1 seq prokMSA_id:68678 AJ438186.1 soil clone 2.53.1.1.1.89 sf_95 3 seqs 2.53.1.1.1.89.2545 OTU 3 seqs prokMSA_id:82872 AB106354.1 anaerobic sludge isolate str. OL prokMSA_id:83916 AB106353.1 anaerobic sludge isolate str. JL prokMSA_id:85421 AB106352.1 anaerobic sludge isolate str. JE 2.53.1.1.1.9 sf_109 3 seqs 2.53.1.1.1.9.524 OTU 2 seqs prokMSA_id:1253 AF027028.1 Candidate division OP11 clone OPS67 prokMSA_id:1254 AF027029.1 Candidate division OP11 clone OPS68 2.53.1.1.1.9.9862 OTU 1 seq prokMSA_id:10552 AF027027.1 Candidate division OP11 clone OPS136 2.53.1.1.1.90 sf_97 1 seq 2.53.1.1.1.90.10156 OTU 1 seq prokMSA_id:10568 AF050607.1 contaminated aquifer clone WCHA1-11 2.53.1.1.1.91 sf_98 1 seq 2.53.1.1.1.91.1077 OTU 1 seq prokMSA_id:24187 AF224816.1 clone Car90fb 2.53.1.1.1.92 sf_99 1 seq 2.53.1.1.1.92.4980 OTU 1 seq prokMSA_id:3492 AF159687.1 related to 2.53.1.1.1.93 sf_9 1 seq 2.53.1.1.1.93.4760 OTU 1 seq prokMSA_id:2915 AF047562.1 Candidate division OP11 clone OPd3 2.54 Verrucomicrobia 139 seqs 2.54.1 Unclassified 10 seqs 2.54.1.1 Unclassified 10 seqs 2.54.1.1.1 Unclassified 10 seqs 2.54.1.1.1.1 sf_3 3 seqs 2.54.1.1.1.1.40 OTU 1 seq prokMSA_id:39097 AJ401121.1 Elbe river clone DEV055 2.54.1.1.1.1.486 OTU 1 seq prokMSA_id:33256 AJ401113.1 Elbe river clone DEV045 2.54.1.1.1.1.985 OTU 1 seq prokMSA_id:37973 AJ390453.1 soil clone PBS-III-20 2.54.1.1.1.2 sf_4 6 seqs 2.54.1.1.1.2.288 OTU 6 seqs prokMSA_id:1588 U60012.1 Prosthecobacter dejongeii prokMSA_id:22941 AJ290012.1 lake bacterioplankton clone FukuS27 prokMSA_id:91270 AY344427.1 Lake Kauhako 30 m clone K2-30-31 prokMSA_id:99083 AY752089.1 lake water clone P38.12 prokMSA_id:99085 AY752101.1 lake water clone P38.38 prokMSA_id:102890 AY212708.1 water 10 m downstream manure clone 259ds10 2.54.1.1.1.3 sf_5 1 seq 2.54.1.1.1.3.686 OTU 1 seq prokMSA_id:70602 AF419674.1 hydrothermal vent sediment clone a2b018 2.54.2 Verrucomicrobiae 129 seqs 2.54.2.1 Verrucomicrobiales 129 seqs 2.54.2.1.1 Opitutaceae 10 seqs 2.54.2.1.1.1 sf_1 10 seqs 2.54.2.1.1.1.1025 OTU 10 seqs prokMSA_id:1549 X99390.1 Opitutus sp. VeGlc2 prokMSA_id:1558 X99391.1 Opitutus sp. VeCb1 prokMSA_id:1559 X99392.1 Opitutus sp. VeSm13 prokMSA_id:1562 AJ229239.1 Opitutus terrae prokMSA_id:19561 AY037575.1 soil clone S040 prokMSA_id:27072 AF316722.1 Crater Lake clone CL120-26 prokMSA_id:47141 AJ229213.1 anoxic bulk soil flooded rice microcosm clone BSV65 clone prokMSA_id:52931 AJ229212.1 anoxic bulk soil flooded rice microcosm clone BSV64 clone prokMSA_id:60789 AF491666.1 USA: San Francisco Mildred Island 2000-07-20 clone SFD1-27 prokMSA_id:65909 AF507412.1 pinyon-juniper forest soil clone C0205 2.54.2.1.2 Unclassified 23 seqs 2.54.2.1.2.1 sf_3 21 seqs 2.54.2.1.2.1.11 OTU 1 seq prokMSA_id:17035 AF234711.1 sludge clone H2 2.54.2.1.2.1.155 OTU 1 seq prokMSA_id:1633 U51864.1 soil clone EA25 2.54.2.1.2.1.399 OTU 1 seq prokMSA_id:35236 AJ132485.1 -mediated molecular isolate pasture soil clone EV107 2.54.2.1.2.1.417 OTU 1 seq prokMSA_id:1605 AF013522.2 soil clone C019 2.54.2.1.2.1.420 OTU 1 seq prokMSA_id:1608 AF013543.2 volcanic cinder field Sunset Crater Arizona clone 2.54.2.1.2.1.430 OTU 1 seq prokMSA_id:43412 AJ252626.1 Agricultural soil SC-I-26 () clone SC-I-26 2.54.2.1.2.1.44 OTU 1 seq prokMSA_id:27626 AJ252677.1 Rhizosphere soil RSC-II-18 () clone RSC-II-18 2.54.2.1.2.1.4800 OTU 1 seq prokMSA_id:49106 AF271315.1 planctomycete clone2 clone 2.54.2.1.2.1.4839 OTU 1 seq prokMSA_id:3043 X64380.1 (soil MC31) clone MC31 2.54.2.1.2.1.4840 OTU 1 seq prokMSA_id:3044 X64381.1 (soil MC17) clone MC17 2.54.2.1.2.1.4841 OTU 1 seq prokMSA_id:3045 X64382.1 (soil MC15) clone MC15 2.54.2.1.2.1.4865 OTU 1 seq prokMSA_id:45324 AF145830.1 Metal-contaminated soil clone K20-32 2.54.2.1.2.1.50 OTU 1 seq prokMSA_id:43879 AF403191.1 aerosol clone cvf122212 2.54.2.1.2.1.565 OTU 1 seq prokMSA_id:33602 AJ132492.1 -mediated molecular isolate pasture soil clone EV116 2.54.2.1.2.1.607 OTU 1 seq prokMSA_id:1585 U62825.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB01 2.54.2.1.2.1.610 OTU 1 seq prokMSA_id:1587 U62837.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB14 2.54.2.1.2.1.701 OTU 1 seq prokMSA_id:46832 AJ244309.1 rhizosphere clone Riz6E2 2.54.2.1.2.1.792 OTU 1 seq prokMSA_id:78274 AB089122.1 termite gut homogenate clone Rs-P07 bacterium 2.54.2.1.2.1.881 OTU 1 seq prokMSA_id:1624 Y07576.1 grassland soil clone DA101 2.54.2.1.2.1.892 OTU 1 seq prokMSA_id:1625 AF013538.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.54.2.1.2.1.911 OTU 1 seq prokMSA_id:1631 U62853.1 sediments Rainbow Bay on Savannah River Site near Aiken SC clone RB35 2.54.2.1.2.2 sf_4 1 seq 2.54.2.1.2.2.169 OTU 1 seq prokMSA_id:71809 AY114317.1 anoxic marine sediment clone LD1-PA26 2.54.2.1.2.3 sf_5 1 seq 2.54.2.1.2.3.1062 OTU 1 seq prokMSA_id:1594 AF159644.1 related to Verrucomicrobiales 2.54.2.1.3 Verrucomicrobia subdivision 3 6 seqs 2.54.2.1.3.1 sf_1 6 seqs 2.54.2.1.3.1.293 OTU 1 seq prokMSA_id:52814 AJ401132.1 Elbe river clone DEV114 2.54.2.1.3.1.357 OTU 1 seq prokMSA_id:21798 AJ401114.1 Elbe river clone DEV059 2.54.2.1.3.1.560 OTU 1 seq prokMSA_id:63231 AF523996.1 forested wetland clone FW49 2.54.2.1.3.1.581 OTU 1 seq prokMSA_id:1572 AF027005.1 hot spring clone OPB35 2.54.2.1.3.1.712 OTU 1 seq prokMSA_id:63232 AF523995.1 coal effluent wetland clone FW4 2.54.2.1.3.1.820 OTU 1 seq prokMSA_id:31253 AJ401128.1 Elbe river clone DEV020 2.54.2.1.4 Verrucomicrobia subdivision 5 8 seqs 2.54.2.1.4.1 sf_1 8 seqs 2.54.2.1.4.1.111 OTU 1 seq prokMSA_id:62665 AF507896.1 Mono Lake clone ML635J-35 2.54.2.1.4.1.21 OTU 1 seq prokMSA_id:63770 AY114336.1 anoxic marine sediment clone LD1-PB9 2.54.2.1.4.1.510 OTU 1 seq prokMSA_id:1540 AF050560.1 contaminated aquifer clone WCHB1-41 2.54.2.1.4.1.530 OTU 1 seq prokMSA_id:63771 AY114334.1 anoxic marine sediment clone LD1-PB20 2.54.2.1.4.1.533 OTU 1 seq prokMSA_id:63776 AY114330.1 anoxic marine sediment clone LD1-PB12 2.54.2.1.4.1.547 OTU 1 seq prokMSA_id:63777 AY114329.1 anoxic marine sediment clone LD1-PB1 2.54.2.1.4.1.629 OTU 1 seq prokMSA_id:70013 AY114328.1 anoxic marine sediment clone LD1-PA50 2.54.2.1.4.1.885 OTU 1 seq prokMSA_id:69582 AJ390455.1 soil clone PBS-III-26 2.54.2.1.5 Verrucomicrobia subdivision 6 1 seq 2.54.2.1.5.1 sf_1 1 seq 2.54.2.1.5.1.875 OTU 1 seq prokMSA_id:1622 AF009974.1 freshwater lake clone LD19 2.54.2.1.6 Verrucomicrobia subdivision 7 6 seqs 2.54.2.1.6.1 sf_1 6 seqs 2.54.2.1.6.1.446 OTU 2 seqs prokMSA_id:63783 AY114323.1 anoxic marine sediment clone LD1-PA37 prokMSA_id:63784 AY114322.1 anoxic marine sediment clone LD1-PA34 2.54.2.1.6.1.559 OTU 1 seq prokMSA_id:63790 AY114314.1 anoxic marine sediment clone LD1-PA20 2.54.2.1.6.1.760 OTU 3 seqs prokMSA_id:62664 AF507898.1 Mono lake clone ML623J-15 prokMSA_id:63827 AF454310.2 Mono lake clone ML316M-1 prokMSA_id:63828 AF454309.1 Mono lake clone ML1228J-2 2.54.2.1.7 Verrucomicrobiaceae 52 seqs 2.54.2.1.7.1 sf_1 1 seq 2.54.2.1.7.1.1024 OTU 1 seq prokMSA_id:83178 AY244959.1 rumen clone BS5 2.54.2.1.7.2 sf_6 41 seqs 2.54.2.1.7.2.1000 OTU 1 seq prokMSA_id:35295 AJ401127.1 extracted river biofilm s clone DEV010 2.54.2.1.7.2.1063 OTU 2 seqs prokMSA_id:1596 X90515.1 Verrucomicrobium spinosum prokMSA_id:99370 AY734252.1 soil clone JAB FS 112 2.54.2.1.7.2.1065 OTU 1 seq prokMSA_id:1597 AF159643.1 related to Verrucomicrobiales 2.54.2.1.7.2.133 OTU 2 seqs prokMSA_id:23971 AF234714.1 sludge clone A38 prokMSA_id:35008 AF234742.1 sludge clone A21 2.54.2.1.7.2.203 OTU 9 seqs prokMSA_id:17463 AJ400240.1 intestine clone S30-1 prokMSA_id:18109 AJ400275.1 Large intestine clone L10-6 prokMSA_id:24442 AJ315481.1 isolate HuCC13 clone prokMSA_id:31006 AJ408970.1 human colonic clone HuCA18 prokMSA_id:35703 AF211287.1 hypersaline black mud clone CE59 prokMSA_id:57441 AJ441243.1 Paralvinella palmiformis mucus secretions clone P. palm 54 prokMSA_id:101704 AY218705.1 penguin droppings sediments clone KD7-122 prokMSA_id:106097 AY444984.1 biofilm on oxygen-transfer membrane clone m43 prokMSA_id:108381 AY271254.1 Akkermansia muciniphila 2.54.2.1.7.2.219 OTU 2 seqs prokMSA_id:48886 AJ401116.1 Elbe river clone DEV035 prokMSA_id:52421 AJ401108.1 Elbe river clone DEV009 2.54.2.1.7.2.222 OTU 3 seqs prokMSA_id:1598 AF142847.1 clone BURTON-29 prokMSA_id:53058 AF424512.1 Verrucomicrobia clone MERTZ_0CM_215 prokMSA_id:59753 AY133443.1 coastal Antarctic sediment clone OB3_171 2.54.2.1.7.2.282 OTU 1 seq prokMSA_id:53214 AJ401105.1 Elbe river clone DEV005 2.54.2.1.7.2.303 OTU 1 seq prokMSA_id:36316 AF424513.1 Verrucomicrobia clone MERTZ_0CM_339 2.54.2.1.7.2.345 OTU 1 seq prokMSA_id:43995 AF424511.1 Verrucomicrobia clone MERTZ_0CM_111 2.54.2.1.7.2.394 OTU 1 seq prokMSA_id:28009 AJ401104.1 Elbe river clone DEV003 2.54.2.1.7.2.410 OTU 1 seq prokMSA_id:1601 AF142791.1 clone ACE-12 2.54.2.1.7.2.414 OTU 1 seq prokMSA_id:1602 Z94005.1 clone T62 2.54.2.1.7.2.475 OTU 2 seqs prokMSA_id:17307 AJ401106.1 Elbe river clone DEV006 prokMSA_id:19930 AJ401130.1 Elbe river clone DEV179 2.54.2.1.7.2.531 OTU 1 seq prokMSA_id:46082 AY028221.1 Arctic Ocean at 131 m depth; SCICEX 96 cruise clone Arctic96BD-2 2.54.2.1.7.2.613 OTU 1 seq prokMSA_id:55975 AJ441222.1 Paralvinella palmiformis mucus secretions clone P. palm C 85 bacterium 2.54.2.1.7.2.660 OTU 4 seqs prokMSA_id:26596 AJ132496.1 -mediated molecular isolate pasture soil clone EV134 prokMSA_id:27540 AJ132484.1 -mediated molecular isolate pasture soil clone EV106 prokMSA_id:41724 AJ132482.1 -mediated molecular isolate pasture soil clone EV104 prokMSA_id:54478 AJ132480.1 -mediated molecular isolate pasture soil clone EV102 2.54.2.1.7.2.661 OTU 1 seq prokMSA_id:1592 U60015.1 Prosthecobacter fusiformis 2.54.2.1.7.2.671 OTU 1 seq prokMSA_id:1593 U60013.1 Prosthecobacter vanneervenii 2.54.2.1.7.2.7042 OTU 2 seqs prokMSA_id:51369 AJ408098.1 equine large intestine clone DL10 prokMSA_id:55323 AJ408134.1 equine large intestine clone DW09 2.54.2.1.7.2.871 OTU 2 seqs prokMSA_id:79805 AY193151.1 marine tidal mat clone BTM64 prokMSA_id:79963 AY193155.1 marine tidal mat clone BTM48 2.54.2.1.7.2.9 OTU 1 seq prokMSA_id:45457 AJ401129.1 extracted river biofilm s clone DEV132 2.54.2.1.7.3 sf_7 6 seqs 2.54.2.1.7.3.29 OTU 6 seqs prokMSA_id:1550 AF159645.1 related to Verrucomicrobiales prokMSA_id:1551 AF159646.1 related to Verrucomicrobiales prokMSA_id:1552 AF159647.1 related to Verrucomicrobiales prokMSA_id:1553 AF159648.1 related to Verrucomicrobiales prokMSA_id:41135 AB073978.1 Fucophilus fucoidanolyticus prokMSA_id:74031 AJ240909.1 marine clone CHAB-II-49 2.54.2.1.7.4 sf_8 4 seqs 2.54.2.1.7.4.806 OTU 4 seqs prokMSA_id:61852 AF449258.1 vent worm clone R103-B35 prokMSA_id:61853 AF449257.1 Riftia pachyptila's tube clone R76-B18 prokMSA_id:61854 AF449256.1 vent worm clone R76-B66 prokMSA_id:61856 AF449255.1 vent worm clone R76-B128 2.54.2.1.8 Xiphinematobacteraceae 23 seqs 2.54.2.1.8.1 sf_3 23 seqs 2.54.2.1.8.1.223 OTU 1 seq prokMSA_id:1603 AF050561.1 contaminated aquifer clone WCHD3-88 2.54.2.1.8.1.249 OTU 1 seq prokMSA_id:82424 AY218772.1 penguin droppings sediments clone KD6-84 2.54.2.1.8.1.352 OTU 8 seqs prokMSA_id:44313 AF145828.1 Metal-contaminated soil clone K20-28 prokMSA_id:51214 AF145811.1 Metal-contaminated soil clone K20-07 prokMSA_id:61310 AY043942.1 forest cut-block mineral soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Williams Lake BC Canada clone SMS9.135WL prokMSA_id:61313 AY043944.1 forest cut-block mineral soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Williams Lake BC Canada clone SMS9.23WL prokMSA_id:61321 AY043933.1 forest cut-block mineral soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Williams Lake BC Canada clone NMS8.47WL prokMSA_id:61329 AY043925.1 forest cut-block mineral soil British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) installation near Williams Lake BC Canada clone NMW3.82WL prokMSA_id:61490 AY043729.1 forest cut-block surface organic matter British Columbia Ministry Forests Long-Term Soil Productivity (LTSP) Installation near Williams Lake BC Canada clone NOS7.72WL prokMSA_id:65927 AF507390.1 pinyon-juniper forest soil clone C0154 2.54.2.1.8.1.418 OTU 1 seq prokMSA_id:1607 AF013520.2 Pinyon Pine forest soil near Cosnino Arizona clone 2.54.2.1.8.1.4830 OTU 3 seqs prokMSA_id:23308 AF445139.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc79 prokMSA_id:25369 AF445101.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc33 prokMSA_id:84908 AY242816.1 soil clone TcA24 2.54.2.1.8.1.814 OTU 4 seqs prokMSA_id:28723 AJ290079.1 Germany: Lake Fuchskuhle clone FukuN43 prokMSA_id:45580 AJ289992.1 lake bacterioplankton clone FukuN18 prokMSA_id:73340 AJ289983.1 lake bacterioplankton clone FukuN106 prokMSA_id:97376 AJ575731.1 lake water clone NE06 2.54.2.1.8.1.876 OTU 1 seq prokMSA_id:1623 AF009975.1 freshwater lake clone LD29 2.54.2.1.8.1.888 OTU 4 seqs prokMSA_id:29275 AF217462.1 Candidatus Xiphinematobacter brevicolli prokMSA_id:37483 AF217461.1 Candidatus Xiphinematobacter rivesi prokMSA_id:43374 AF217460.1 Candidatus Xiphinematobacter americani prokMSA_id:65712 AF507668.1 pinyon-juniper forest soil clone C1172 2.55 WS1 2 seqs 2.55.1 Unclassified 2 seqs 2.55.1.1 Unclassified 2 seqs 2.55.1.1.1 Unclassified 2 seqs 2.55.1.1.1.1 sf_1 1 seq 2.55.1.1.1.1.1154 OTU 1 seq prokMSA_id:12396 AJ009463.1 chlorobenzene-degrading consortium clone SJA-43 2.55.1.1.1.2 sf_2 1 seq 2.55.1.1.1.2.2466 OTU 1 seq prokMSA_id:13727 AB015272.1 deep sea sediment clone JTB326 2.56 WS3 8 seqs 2.56.1 KSB4 2 seqs 2.56.1.1 Unclassified 2 seqs 2.56.1.1.1 Unclassified 2 seqs 2.56.1.1.1.1 sf_1 2 seqs 2.56.1.1.1.1.785 OTU 2 seqs prokMSA_id:28642 AJ390446.1 soil clone PBS-II-35 prokMSA_id:36982 AJ390459.1 soil clone PBS-III-32 2.56.2 Sediment-1 1 seq 2.56.2.1 Unclassified 1 seq 2.56.2.1.1 Unclassified 1 seq 2.56.2.1.1.1 sf_21 1 seq 2.56.2.1.1.1.373 OTU 1 seq prokMSA_id:45661 AF280852.1 bioreactor clone mle1-16 2.56.3 Unclassified 5 seqs 2.56.3.1 Unclassified 5 seqs 2.56.3.1.1 Unclassified 5 seqs 2.56.3.1.1.1 sf_1 3 seqs 2.56.3.1.1.1.10127 OTU 1 seq prokMSA_id:10659 AF142819.1 clone ACE-44 2.56.3.1.1.1.2537 OTU 1 seq prokMSA_id:63782 AY114325.1 anoxic marine sediment clone LD1-PA39 2.56.3.1.1.1.98 OTU 1 seq prokMSA_id:1712 AF142973.1 clone TAYNAYA-25 2.56.3.1.1.2 sf_2 1 seq 2.56.3.1.1.2.68 OTU 1 seq prokMSA_id:36561 AJ390456.1 soil clone PBS-III-27 2.56.3.1.1.3 sf_3 1 seq 2.56.3.1.1.3.95 OTU 1 seq prokMSA_id:78123 AJ535231.1 marine sediment above hydrate ridge clone Hyd24-32 2.57 WS5 2 seqs 2.57.1 Unclassified 2 seqs 2.57.1.1 Unclassified 2 seqs 2.57.1.1.1 Unclassified 2 seqs 2.57.1.1.1.1 sf_1 1 seq 2.57.1.1.1.1.7697 OTU 1 seq prokMSA_id:74399 AF050598.1 contaminated aquifer clone WCHB1-60 2.57.1.1.1.2 sf_2 1 seq 2.57.1.1.1.2.8119 OTU 1 seq prokMSA_id:33606 AF419661.1 hydrothermal vent sediment clone a2b013 2.58 WS6 7 seqs 2.58.1 Unclassified 7 seqs 2.58.1.1 Unclassified 7 seqs 2.58.1.1.1 Unclassified 7 seqs 2.58.1.1.1.1 sf_1 7 seqs 2.58.1.1.1.1.6372 OTU 1 seq prokMSA_id:3630 AF050597.1 contaminated aquifer clone WCHB1-01 2.58.1.1.1.1.6393 OTU 1 seq prokMSA_id:3594 AF050596.1 contaminated aquifer clone WCHB1-15 2.58.1.1.1.1.6406 OTU 4 seqs prokMSA_id:3635 AF172913.1 clone CA1-191 prokMSA_id:3636 AF172911.1 clone CA1-115 prokMSA_id:3638 AF172909.1 clone CA1-22 prokMSA_id:3639 AF172908.1 clone CA1-17 2.58.1.1.1.1.6441 OTU 1 seq prokMSA_id:3618 AF050595.1 contaminated aquifer clone WCHB1-06 2.6 Bacteroidetes 2073 seqs 2.6.1 Bacteroidetes 717 seqs 2.6.1.1 Bacteroidales 716 seqs 2.6.1.1.1 Bacteroidaceae 106 seqs 2.6.1.1.1.1 sf_12 102 seqs 2.6.1.1.1.1.5256 OTU 1 seq prokMSA_id:77967 AB088925.1 termite gut homogenate clone Rs-D38 bacterium 2.6.1.1.1.1.5264 OTU 1 seq prokMSA_id:43829 AJ400246.1 Large intestine clone L7-17 2.6.1.1.1.1.5275 OTU 2 seqs prokMSA_id:73683 AY082449.1 neutral pH mine biofilm isolate 253c prokMSA_id:108417 AY570561.1 -temperature biodegraded Canadian oil reservoir clone PL-26B10 2.6.1.1.1.1.5285 OTU 1 seq prokMSA_id:2030 X83953.1 Bacteroides stercoris 2.6.1.1.1.1.5320 OTU 3 seqs prokMSA_id:1953 M86695.1 Bacteroides distasonis prokMSA_id:85501 AF499899.1 human colonic mucosal biopsy clone ABLCf15 prokMSA_id:114185 AY916297.1 human sigmoid colon biopsy clone MH76 2.6.1.1.1.1.5326 OTU 3 seqs prokMSA_id:2043 AF153869.1 faecal clone adhufec26.25 prokMSA_id:24383 AF132239.1 adult human fecal matter clone adhufec151 prokMSA_id:114030 AY916342.1 human stool clone C703 2.6.1.1.1.1.5329 OTU 1 seq prokMSA_id:2045 AB021157.1 Bacteroides acidofaciens str. 2.6.1.1.1.1.5424 OTU 2 seqs prokMSA_id:2035 L16485.1 Bacteroides eggerthii prokMSA_id:70488 AB050107.1 Bacteroides eggerthii str. DSM 20697T 2.6.1.1.1.1.5425 OTU 1 seq prokMSA_id:37022 AB050108.1 Bacteroides ovatus str. JCM 5824T 2.6.1.1.1.1.5441 OTU 3 seqs prokMSA_id:33268 AJ408988.1 human colonic clone HuCB3 prokMSA_id:45060 AJ408965.1 human colonic clone HuCA9 prokMSA_id:52020 AJ408983.1 human colonic clone HuCA36 2.6.1.1.1.1.5450 OTU 2 seqs prokMSA_id:1988 X89217.1 Bacteroides sp. prokMSA_id:50342 AJ409009.1 human colonic clone HuCA21 2.6.1.1.1.1.5474 OTU 3 seqs prokMSA_id:1992 AB021159.1 Bacteroides acidofaciens str.A24 prokMSA_id:1994 AB021161.1 Bacteroides acidofaciens str.A31 prokMSA_id:1998 AB021165.1 Bacteroides acidofaciens str.A43 2.6.1.1.1.1.5489 OTU 2 seqs prokMSA_id:1986 X83951.1 Bacteroides caccae prokMSA_id:74577 AF132273.1 adult human fecal matter clone adhufec51 2.6.1.1.1.1.5551 OTU 5 seqs prokMSA_id:2020 L16486.1 Bacteroides uniformis prokMSA_id:2024 AF139524.1 Bacteroides sp. AR20 prokMSA_id:28973 AF132240.1 adult human fecal matter clone adhufec153 prokMSA_id:47157 AB050110.1 Bacteroides uniformis str. JCM 5828T prokMSA_id:99146 AY349154.1 Bacteroides uniformis WH207 2.6.1.1.1.1.5596 OTU 3 seqs prokMSA_id:30861 AF319778.1 Bacteroides sp. str. 139 prokMSA_id:46819 AF445205.2 Swine fecal isolate str. FPC111 prokMSA_id:89392 AJ514255.1 Bacteroides sp. 111 2.6.1.1.1.1.5621 OTU 1 seq prokMSA_id:82138 AY217430.1 TCE-dechlorinating microbial community clone 3G 2.6.1.1.1.1.5627 OTU 1 seq prokMSA_id:43091 AF132259.1 adult human fecal matter clone adhufec303 2.6.1.1.1.1.5717 OTU 1 seq prokMSA_id:1900 AF050545.1 contaminated aquifer clone WCHB1-69 2.6.1.1.1.1.5837 OTU 1 seq prokMSA_id:71331 AF132263.1 adult human fecal matter clone adhufec355 2.6.1.1.1.1.5844 OTU 6 seqs prokMSA_id:1990 AB021156.1 Bacteroides acidofaciens str. prokMSA_id:1991 AB021158.1 Bacteroides acidofaciens str.A1 prokMSA_id:1993 AB021160.1 Bacteroides acidofaciens str.A29 prokMSA_id:1995 AB021162.1 Bacteroides acidofaciens str.A32 prokMSA_id:1996 AB021163.1 Bacteroides acidofaciens str.A37 prokMSA_id:1997 AB021164.1 Bacteroides acidofaciens str.A40 2.6.1.1.1.1.5885 OTU 1 seq prokMSA_id:25165 AJ408982.1 human colonic clone HuCA34 2.6.1.1.1.1.5897 OTU 1 seq prokMSA_id:45921 AF371909.1 phylotype OTU-29 swine intestine clone p-240-o5 2.6.1.1.1.1.5950 OTU 1 seq prokMSA_id:44290 AF233413.1 human fecal clone HF10 2.6.1.1.1.1.5979 OTU 24 seqs prokMSA_id:2000 M11656.1 Bacteroides fragilis prokMSA_id:2001 M61006.1 Bacteroides fragilis prokMSA_id:2003 X83935.1 Bacteroides fragilis prokMSA_id:2004 X83944.1 Bacteroides fragilis prokMSA_id:2005 X83945.1 Bacteroides fragilis prokMSA_id:2006 X83946.1 Bacteroides fragilis prokMSA_id:2007 X83947.1 Bacteroides fragilis prokMSA_id:2008 X83948.1 Bacteroides fragilis prokMSA_id:2009 X83949.1 Bacteroides fragilis prokMSA_id:2010 X83950.1 Bacteroides fragilis prokMSA_id:2011 X83936.1 Bacteroides fragilis prokMSA_id:2012 X83937.1 Bacteroides fragilis prokMSA_id:2013 X83938.1 Bacteroides fragilis prokMSA_id:2014 X83939.1 Bacteroides fragilis prokMSA_id:2015 X83940.1 Bacteroides fragilis prokMSA_id:2016 X83941.1 Bacteroides fragilis prokMSA_id:2017 X83942.1 Bacteroides fragilis prokMSA_id:2018 X83943.1 Bacteroides fragilis prokMSA_id:2019 AF133539.1 Bacteroides sp. CIP103040 str. CIP 103 040 CIP103040 prokMSA_id:51984 AJ408981.1 human colonic clone HuCA33 prokMSA_id:52643 AB050106.1 Bacteroides fragilis prokMSA_id:71002 AF357555.1 mpn-isolate group 7 prokMSA_id:105416 AP006841.1 Bacteroides fragilis str. YCH46 prokMSA_id:108380 NC_006347.1 Bacteroides fragilis 2.6.1.1.1.1.5980 OTU 1 seq prokMSA_id:48647 AF227834.1 environmental isolate 31285 2.6.1.1.1.1.6022 OTU 1 seq prokMSA_id:45315 AJ400245.1 Large intestine clone L7-16 2.6.1.1.1.1.6060 OTU 2 seqs prokMSA_id:47293 AJ318179.1 Waste-gas biofilter clone BIsii27 prokMSA_id:73751 AY082451.1 neutral pH mine biofilm isolate 265d 2.6.1.1.1.1.6064 OTU 21 seqs prokMSA_id:1982 M58763.2 Bacteroides thetaiotaomicron prokMSA_id:1983 AF139525.1 Bacteroides sp. AR29 prokMSA_id:46476 AB050109.1 Bacteroides thetaiotaomicron str. JCM 5827T prokMSA_id:57995 AB094183.1 feces human infant clone G-56 prokMSA_id:71812 AF530346.1 Crohn adult fecal flora clone cadhufec17h05sav prokMSA_id:72562 AF132251.1 adult human fecal matter clone adhufec23 prokMSA_id:82797 AY230770.1 Bacteroides sp. 'Smarlab BioMol-2301151' str. Smarlab BioMol 2301151 prokMSA_id:83324 AE016931.1 Bacteroides thetaiotaomicron str. VPI-5482 VPI-5482 prokMSA_id:83868 AE016942.1 Bacteroides thetaiotaomicron str. VPI-5482 VPI-5482 prokMSA_id:84161 AE016937.1 Bacteroides thetaiotaomicron str. VPI-5482 VPI-5482 prokMSA_id:85849 AE016933.1 Bacteroides thetaiotaomicron str. VPI-5482 VPI-5482 prokMSA_id:86008 AE016936.1 Bacteroides thetaiotaomicron str. VPI-5482 VPI-5482 prokMSA_id:86458 NC_004663.1 Bacteroides thetaiotaomicron VPI-5482 prokMSA_id:111403 AY895188.1 Bacteroides thetaiotaomicron str. 3164 prokMSA_id:111421 AY895191.1 Bacteroides thetaiotaomicron str. 3731 prokMSA_id:111482 AY895189.1 Bacteroides thetaiotaomicron str. 3443 prokMSA_id:111759 AY895183.1 Bacteroides thetaiotaomicron str. 19_343 prokMSA_id:111836 AY895202.1 Bacteroides thetaiotaomicron str. 8713 prokMSA_id:112005 AY895200.1 Bacteroides thetaiotaomicron str. 8669 prokMSA_id:112079 AY895198.1 Bacteroides thetaiotaomicron str. 5951 prokMSA_id:112322 AY895186.1 Bacteroides thetaiotaomicron str. 0633 2.6.1.1.1.1.6176 OTU 4 seqs prokMSA_id:42167 AF419690.1 hydrothermal vent sediment clone C1_B008 prokMSA_id:77623 AJ535255.1 marine sediment above hydrate ridge clone Hyd89-65 prokMSA_id:109298 AJ704701.1 marine sediment clone HMMVPog-1 prokMSA_id:114193 AY222319.1 host hindgut caecum clone CFB 1 2.6.1.1.1.1.6309 OTU 2 seqs prokMSA_id:44276 AF132266.1 adult human fecal matter clone adhufec367 prokMSA_id:60914 AY126616.1 isolate str. SMARLAB 84634 2.6.1.1.1.1.6326 OTU 1 seq prokMSA_id:72466 AJ416906.1 Bacteroides sp. str. 0103 800 2.6.1.1.1.2 sf_6 1 seq 2.6.1.1.1.2.5792 OTU 1 seq prokMSA_id:65426 AF513095.1 activated sludge foam clone 47 2.6.1.1.1.3 sf_9 3 seqs 2.6.1.1.1.3.5377 OTU 1 seq prokMSA_id:1955 AF001707.1 rumen clone RC16 2.6.1.1.1.3.5498 OTU 2 seqs prokMSA_id:1880 AF001701.1 rumen clone RC9 prokMSA_id:1881 AF001735.1 rumen clone RF2 2.6.1.1.2 Porphyromonadaceae 128 seqs 2.6.1.1.2.1 sf_1 128 seqs 2.6.1.1.2.1.5295 OTU 1 seq prokMSA_id:72093 AF371910.1 phylotype OTU-30 swine intestine clone p-987-s962-5 2.6.1.1.2.1.5306 OTU 1 seq prokMSA_id:2037 AB009202.1 rumen clone RFN46 bacterium 2.6.1.1.2.1.5325 OTU 1 seq prokMSA_id:41295 AJ295642.1 uranium mill tailing clone KF-Gitt2-47 2.6.1.1.2.1.5343 OTU 1 seq prokMSA_id:1941 X76259.1 Porphyromonas cangingivalis 2.6.1.1.2.1.5371 OTU 1 seq prokMSA_id:1950 X76260.1 Porphyromonas cansulci 2.6.1.1.2.1.5373 OTU 1 seq prokMSA_id:1951 X76261.1 Porphyromonas canoris 2.6.1.1.2.1.5374 OTU 1 seq prokMSA_id:1952 X83954.1 Bacteroides merdae 2.6.1.1.2.1.5411 OTU 1 seq prokMSA_id:1960 AF153865.1 faecal clone adhufec77.25 2.6.1.1.2.1.5413 OTU 1 seq prokMSA_id:1963 AF129860.1 anaerobic digestor clone BB23 2.6.1.1.2.1.5414 OTU 1 seq prokMSA_id:1966 U41355.1 CDC Group DF-3 2.6.1.1.2.1.5415 OTU 1 seq prokMSA_id:1969 AB009197.1 rumen clone RFN41 bacterium 2.6.1.1.2.1.5429 OTU 1 seq prokMSA_id:28832 AF276446.1 PCB-contaminated St. Lawrence River sediment clone RFLP 2E 2.6.1.1.2.1.5454 OTU 8 seqs prokMSA_id:25154 AJ318126.1 Waste-gas biofilter clone BIfciii40 prokMSA_id:47890 Y18530.1 Dysgonomonas gadei str. 1145589 prokMSA_id:78080 AB088928.1 termite gut homogenate clone Rs-M21 bacterium prokMSA_id:81335 AB100457.1 termite gut clone Rs-008 prokMSA_id:91816 AJ319867.2 Dysgonomonas mossii str. CCUG 43457 prokMSA_id:98890 AJ576373.1 hindgut homogenate Pachnoda ephippiata larva clone PeH10 prokMSA_id:101063 AY571962.1 Bacteroidetes S1 prokMSA_id:107721 AY643492.1 Dysgonomonas wimpennyi str. ANFA2 2.6.1.1.2.1.5460 OTU 1 seq prokMSA_id:38278 AJ400267.2 Feces clone F8 2.6.1.1.2.1.5467 OTU 4 seqs prokMSA_id:1942 AB009203.1 rumen clone RFN47 prokMSA_id:1968 AB009171.1 rumen clone RFN12 bacterium prokMSA_id:1970 AB009199.1 rumen clone RFN43 bacterium prokMSA_id:1972 AB009233.1 rumen clone RFN86 bacterium 2.6.1.1.2.1.5468 OTU 1 seq prokMSA_id:1975 U81722.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinHA54 2.6.1.1.2.1.5469 OTU 1 seq prokMSA_id:1976 U81730.2 fluidized bed anaerobic digestor fed vinasses (waste wine distillery) clone vadinHA28 2.6.1.1.2.1.5496 OTU 1 seq prokMSA_id:32176 AJ408246.1 equine large intestine clone PL40 2.6.1.1.2.1.5510 OTU 1 seq prokMSA_id:77508 AF524856.1 sphagnum peat bog clone 26-4b2 2.6.1.1.2.1.5530 OTU 1 seq prokMSA_id:74492 AJ318110.1 Waste-gas biofilter clone BIci17 2.6.1.1.2.1.5537 OTU 2 seqs prokMSA_id:31170 AF371916.1 phylotype OTU-34 swine intestine clone p-2177-s959-3 prokMSA_id:35721 AF371917.1 phylotype OTU-34 swine intestine clone p-816-a5 2.6.1.1.2.1.5546 OTU 1 seq prokMSA_id:49573 AF349759.2 reductive TCE-dehalogenating enrichment clone TCE5 2.6.1.1.2.1.5557 OTU 1 seq prokMSA_id:51927 AY008308.1 Bacteroides cf. forsythus oral clone BU063 forsythus 2.6.1.1.2.1.5593 OTU 1 seq prokMSA_id:79483 AY187904.1 mine water clone M2 2.6.1.1.2.1.5651 OTU 1 seq prokMSA_id:78342 AB088939.1 termite gut homogenate clone Rs-F14 bacterium 2.6.1.1.2.1.5652 OTU 1 seq prokMSA_id:78288 AB088943.1 termite gut homogenate clone Rs-D29 bacterium 2.6.1.1.2.1.5664 OTU 1 seq prokMSA_id:78297 AB088937.1 termite gut homogenate clone Rs-E83 bacterium 2.6.1.1.2.1.5680 OTU 1 seq prokMSA_id:82191 AB100460.1 termite gut clone Rs-106 2.6.1.1.2.1.5713 OTU 11 seqs prokMSA_id:1931 X82823.1 Porphyromonas catoniae prokMSA_id:18314 AF366271.1 derived supragingival plaque on tooth surfaces clone DS033 sp. prokMSA_id:28623 AF385560.1 purified crevicular epithelial cells clone BS045 oral prokMSA_id:30493 AY008313.1 Porphyromonas sp. oral clone EP003 prokMSA_id:30507 AF385561.1 purified crevicular epithelial cells clone BS077 oral prokMSA_id:72237 AY008310.1 Porphyromonas sp. oral clone CW034 prokMSA_id:72284 AF385555.1 purified crevicular epithelial cells clone BR037 oral prokMSA_id:72586 AF385516.1 healthy and subjects with halitosis clone DP023 oral prokMSA_id:74406 AF393476.1 swab advanced noma lesion clone AW032 prokMSA_id:94489 AJ583190.1 ground water monitoring deep-well at radioactive waste disposal site clone S15B-MN34 prokMSA_id:112692 AY862036.1 Washburn Spring 1 community clone WB1B005 2.6.1.1.2.1.5719 OTU 1 seq prokMSA_id:41939 AJ307946.1 mRNA clone sipK57 2.6.1.1.2.1.5732 OTU 5 seqs prokMSA_id:1928 AB003389.1 Bacteroides sp. sp4 prokMSA_id:1973 AB003390.1 Bacteroides sp. str. sp14 prokMSA_id:66177 AJ488088.1 chlorobenzene-degrading consortium clone IIB-29 prokMSA_id:109157 AB195874.1 Anaerobic sludge clone S11 prokMSA_id:109162 AB195875.1 Anaerobic sludge clone S28 2.6.1.1.2.1.5752 OTU 2 seqs prokMSA_id:1943 AB009214.1 rumen clone RFN67 bacterium prokMSA_id:1971 AB009221.1 rumen clone RFN73 bacterium 2.6.1.1.2.1.5761 OTU 1 seq prokMSA_id:46885 AY005072.1 subgingival dental plaque clone AU126 2.6.1.1.2.1.5771 OTU 1 seq prokMSA_id:77581 AB074602.1 synonym: CFB group clone APe2_39 2.6.1.1.2.1.5781 OTU 1 seq prokMSA_id:27468 AJ408203.1 equine large intestine clone MW16 2.6.1.1.2.1.5791 OTU 1 seq prokMSA_id:43915 AF385565.1 purified crevicular epithelial cells clone BU045 oral 2.6.1.1.2.1.5800 OTU 7 seqs prokMSA_id:1938 U43697.1 oral clone 3.23 prokMSA_id:28004 AY005069.1 subgingival dental plaque clone F016 prokMSA_id:29149 AY005067.1 subgingival dental plaque clone AJ002 prokMSA_id:51233 AY005068.1 subgingival dental plaque clone BB134 prokMSA_id:84092 AY253728.1 Porphyromonas endodontalis str. ATCC 35406 prokMSA_id:84660 AY207057.1 human mouth clone P4GB_100 prokMSA_id:84799 AY207054.1 human mouth clone P2PB_52 2.6.1.1.2.1.5806 OTU 2 seqs prokMSA_id:74495 AF132275.1 adult human fecal matter clone adhufec55 prokMSA_id:81083 AY169416.1 Bacteroides merdae 2.6.1.1.2.1.5817 OTU 1 seq prokMSA_id:77707 AB088927.2 termite gut homogenate clone Rs-N56 bacterium 2.6.1.1.2.1.5852 OTU 1 seq prokMSA_id:38316 AB062835.1 termite gut homogenate clone BCf7-02 2.6.1.1.2.1.5932 OTU 1 seq prokMSA_id:77773 AB088940.1 termite gut homogenate clone Rs-P41 bacterium 2.6.1.1.2.1.5943 OTU 32 seqs prokMSA_id:1948 L16492.1 Porphyromonas gingivalis prokMSA_id:1962 X73964.1 Porphyromonas gingivalis prokMSA_id:17881 AF287987.1 Porphyromonas gingivalis str. cerco 1.5.2 prokMSA_id:18895 AF414817.1 Porphyromonas gingivalis str. 27-PGI prokMSA_id:26186 AF285869.1 Porphyromonas gulae str. Manga 1.41 prokMSA_id:31120 AF414820.1 Porphyromonas gingivalis str. 30-PGI prokMSA_id:32807 AF285873.1 Porphyromonas gulae str. chien 4.2 prokMSA_id:33231 AF414816.1 Porphyromonas gingivalis str. 26-PGI prokMSA_id:33300 AF414809.1 Porphyromonas gingivalis str. ATCC 33277 prokMSA_id:33338 AB035457.1 Porphyromonas gingivalis str. SUNY1021 prokMSA_id:34895 AF414810.1 Porphyromonas gingivalis str. 1-PGI prokMSA_id:35758 AF414813.1 Porphyromonas gingivalis str. 40-PGI prokMSA_id:35989 AF208290.1 Porphyromonas gulae str. Loup-1; ATCC 51700 prokMSA_id:36451 AF414815.1 Porphyromonas gingivalis str. 25-PGI prokMSA_id:39994 AF285872.1 Porphyromonas gulae str. ours 3.1 prokMSA_id:42789 AF414818.1 Porphyromonas gingivalis str. 28-PGI prokMSA_id:42871 AF287986.1 Porphyromonas gulae str. coyote 1.5.1 prokMSA_id:42887 AF414811.1 Porphyromonas gingivalis str. 2-PGI prokMSA_id:44500 AF414814.1 Porphyromonas gingivalis str. 42-PGI prokMSA_id:46900 AB035458.1 Porphyromonas gingivalis str. A7A1-28 prokMSA_id:47786 AF285874.1 Porphyromonas gulae str. B 243 prokMSA_id:49110 AB035456.1 Porphyromonas gingivalis str. W83 prokMSA_id:49606 AF285870.1 Porphyromonas gingivalis str. ATCC33277 prokMSA_id:53253 AB035459.1 Porphyromonas gingivalis str. ATCC33277 prokMSA_id:71486 AF414819.1 Porphyromonas gingivalis str. 29-PGI prokMSA_id:71638 AF285871.1 Porphyromonas gulae str. chat 3.1 prokMSA_id:74161 AF414812.1 Porphyromonas gingivalis str. 3-PGI prokMSA_id:93277 AE017179.1 Porphyromonas gingivalis str. W83 prokMSA_id:93513 NC_002950.2 Porphyromonas gingivalis W83 prokMSA_id:93631 AE017172.1 Porphyromonas gingivalis str. W83 prokMSA_id:93824 AE017176.1 Porphyromonas gingivalis str. W83 prokMSA_id:93948 AE017177.1 Porphyromonas gingivalis str. W83 2.6.1.1.2.1.5952 OTU 1 seq prokMSA_id:28974 AF371918.1 phylotype OTU-233 swine intestine clone p-1862-c3 2.6.1.1.2.1.5961 OTU 2 seqs prokMSA_id:55494 AJ488070.1 chlorobenzene-degrading consortium clone IA-16 prokMSA_id:79914 AY193184.1 oxidized iron deposits clone GalB60 2.6.1.1.2.1.5963 OTU 2 seqs prokMSA_id:1929 AF157056.1 Bacteroides sp. ASF519 str. ASF 519 prokMSA_id:69900 AF357554.1 mpn-isolate group 6 2.6.1.1.2.1.5990 OTU 1 seq prokMSA_id:19082 AB062826.1 termite gut homogenate clone BCf5-08 2.6.1.1.2.1.6009 OTU 1 seq prokMSA_id:77928 AB088932.1 termite gut homogenate clone Rs-J02 bacterium 2.6.1.1.2.1.6012 OTU 1 seq prokMSA_id:25137 AJ400264.1 Large intestine clone L11-6 2.6.1.1.2.1.6116 OTU 1 seq prokMSA_id:42791 AB056670.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT4 2.6.1.1.2.1.6117 OTU 1 seq prokMSA_id:41054 AF276457.1 PCB-contaminated St. Lawrence River sediment clone RFLP 40E 2.6.1.1.2.1.6214 OTU 12 seqs prokMSA_id:1922 X73962.1 Bacteroides forsythus prokMSA_id:22635 AB053946.1 Tannerella forsythensis str. Sai5 prokMSA_id:34893 AB053942.1 Tannerella forsythensis str. KM3 prokMSA_id:36831 AB053938.1 Tannerella forsythensis str. FJ1 prokMSA_id:38366 AB053941.1 Tannerella forsythensis str. HG3 prokMSA_id:38992 AB053943.1 Tannerella forsythensis str. Ko3 prokMSA_id:40709 AB053939.1 Tannerella forsythensis str. G9 prokMSA_id:40924 AB053944.1 Tannerella forsythensis str. KS16 prokMSA_id:46214 AB053945.1 Tannerella forsythensis str. L7 prokMSA_id:46574 AB053947.1 Tannerella forsythensis str. TR6 prokMSA_id:49167 AB053940.1 Tannerella forsythensis str. HA3 prokMSA_id:51467 AB035460.1 Tannerella forsythensis str. ATCC43037 2.6.1.1.3 Prevotellaceae 318 seqs 2.6.1.1.3.1 sf_1 318 seqs 2.6.1.1.3.1.5245 OTU 1 seq prokMSA_id:2164 AF018532.1 rumen clone 30-38 2.6.1.1.3.1.5246 OTU 1 seq prokMSA_id:2167 AF018540.1 rumen clone 30-46 2.6.1.1.3.1.5249 OTU 3 seqs prokMSA_id:71102 AY005053.1 subgingival dental plaque clone AH005 prokMSA_id:72964 AY005054.1 subgingival dental plaque clone AO036 prokMSA_id:88701 AY323524.1 Prevotella denticola str. ATCC 35308 2.6.1.1.3.1.5259 OTU 3 seqs prokMSA_id:2065 AF001729.1 rumen clone RCP19 prokMSA_id:2096 AF018475.1 rumen clone 12-66 prokMSA_id:18443 AB034101.1 rumen clone 3C3d-1 2.6.1.1.3.1.5262 OTU 1 seq prokMSA_id:70217 AY028443.1 mpn-isolate group 2 2.6.1.1.3.1.5265 OTU 1 seq prokMSA_id:46017 AF371882.1 phylotype OTU-20 swine intestine clone p-408-o3 2.6.1.1.3.1.5290 OTU 1 seq prokMSA_id:2170 AJ009933.1 Prevotella aff. ruminicola Tc2-24 2.6.1.1.3.1.5291 OTU 1 seq prokMSA_id:2172 AF001708.1 rumen clone RC17 2.6.1.1.3.1.5292 OTU 1 seq prokMSA_id:2173 L16478.1 Prevotella buccae 2.6.1.1.3.1.5323 OTU 1 seq prokMSA_id:16433 AB056643.1 fiber rumen clone AAB29 2.6.1.1.3.1.5331 OTU 1 seq prokMSA_id:47101 AF385519.1 healthy and subjects with halitosis clone DO022 oral 2.6.1.1.3.1.5338 OTU 1 seq prokMSA_id:47181 AF371883.1 phylotype OTU-10 swine intestine clone p-1005-a5 2.6.1.1.3.1.5342 OTU 1 seq prokMSA_id:51061 AJ289182.1 corneal ulcer clone E1-K13 2.6.1.1.3.1.5360 OTU 1 seq prokMSA_id:73937 AF371904.1 phylotype OTU-27 swine intestine clone p-1273-a5 2.6.1.1.3.1.5386 OTU 3 seqs prokMSA_id:2136 AF018452.1 rumen clone 12-1 prokMSA_id:2162 AF018528.1 rumen clone 30-34 prokMSA_id:2163 AF018529.1 rumen clone 30-35 2.6.1.1.3.1.5398 OTU 25 seqs prokMSA_id:2064 AF001723.1 rumen clone RC40 prokMSA_id:2067 AF001751.1 rumen clone RF19 prokMSA_id:2070 AF001771.1 rumen clone RF40 prokMSA_id:2071 AB004909.1 Prevotella ruminicola str. PF20-3 Bovine rumen prokMSA_id:2072 AB009180.1 rumen clone RFN21 bacterium prokMSA_id:2078 AB009215.1 rumen clone RFN68 bacterium prokMSA_id:2079 AB009225.1 rumen clone RFN78 bacterium prokMSA_id:2084 AB003384.1 Prevotella sp. str. sp24 prokMSA_id:2085 AB003385.1 Prevotella sp. str. sp34 prokMSA_id:2086 AB003386.1 Prevotella sp. str. sp28 prokMSA_id:2087 AB003387.1 Prevotella sp. str. sp158 prokMSA_id:2088 AB003388.1 Prevotella sp. str. sp20 prokMSA_id:2089 AB003401.1 Prevotella ruminicola str. T31 prokMSA_id:2090 AB003403.1 Prevotella subsp. ruminicola prokMSA_id:41037 AB034091.1 rumen clone 4C3d-18 prokMSA_id:49294 AB034097.1 rumen clone 4C3d-1 prokMSA_id:52673 AB034099.1 rumen clone 4C3d-15 prokMSA_id:82806 AY244915.1 cow rumen clone BF37 prokMSA_id:83302 AY244941.1 cow rumen clone BE27 prokMSA_id:84681 AY244897.1 cow rumen clone BF19 prokMSA_id:85456 AY244920.1 cow rumen clone BE3 prokMSA_id:85968 AY244899.1 cow rumen clone BF21 prokMSA_id:86283 AY244928.1 cow rumen clone BE11 prokMSA_id:86611 AY244893.1 cow rumen clone BF15 prokMSA_id:102311 AY699286.1 Prevotella ruminicola L16 2.6.1.1.3.1.5403 OTU 7 seqs prokMSA_id:2048 AJ006457.1 Prevotella bryantii str. B14 (DSM 11371 species ) prokMSA_id:2049 AF001755.1 rumen clone RF23 prokMSA_id:2050 AF018453.1 rumen clone 12-4 prokMSA_id:23685 AB034106.1 rumen clone 5C3d-4 prokMSA_id:31856 AF396925.1 Prevotella bryantii str. C21a prokMSA_id:39885 AB034107.1 rumen clone 3C3d-16 prokMSA_id:52763 AB034105.1 rumen clone 5C3d-8 2.6.1.1.3.1.5406 OTU 8 seqs prokMSA_id:2191 AF018455.1 rumen clone 12-7 prokMSA_id:2203 AF018466.1 rumen clone 12-44 prokMSA_id:2205 AF018478.1 rumen clone 12-71 prokMSA_id:2207 AF018484.1 rumen clone 12-106 prokMSA_id:2209 AF018489.1 rumen clone 12-114 prokMSA_id:2211 AF018505.1 rumen clone 30-8 prokMSA_id:2214 AF018534.1 rumen clone 30-40 prokMSA_id:41434 AF018474.1 rumen clone 12-64 2.6.1.1.3.1.5408 OTU 2 seqs prokMSA_id:2176 X81876.1 Prevotella dentalis str. DSM 3688 prokMSA_id:2177 X81877.1 Hallella seregens str. ATCC 51272 2.6.1.1.3.1.5422 OTU 2 seqs prokMSA_id:2128 AB009236.1 rumen clone RFN9 bacterium prokMSA_id:83419 AY244895.1 cow rumen clone BF17 2.6.1.1.3.1.5426 OTU 1 seq prokMSA_id:70671 AF385509.1 healthy and subjects with halitosis clone DO014 oral 2.6.1.1.3.1.5437 OTU 2 seqs prokMSA_id:82967 AY244914.1 cow rumen clone BF36 prokMSA_id:86520 AY244919.1 cow rumen clone BE1 2.6.1.1.3.1.5453 OTU 1 seq prokMSA_id:22951 AY005062.1 subgingival dental plaque clone AU069 2.6.1.1.3.1.5484 OTU 1 seq prokMSA_id:71907 AY134905.1 Prevotella sp. oral clone FX046 2.6.1.1.3.1.5528 OTU 2 seqs prokMSA_id:2127 AB009224.1 rumen clone RFN76 bacterium prokMSA_id:2130 AB009239.1 rumen clone RFN92 bacterium 2.6.1.1.3.1.5539 OTU 1 seq prokMSA_id:2081 AB009237.1 rumen clone RFN90 bacterium 2.6.1.1.3.1.5556 OTU 1 seq prokMSA_id:34809 AB034021.1 rumen clone 4C0d-8 2.6.1.1.3.1.5565 OTU 6 seqs prokMSA_id:22971 AB050111.1 Bacteroides vulgatus str. JCM 5826T prokMSA_id:28021 AF132256.1 adult human fecal matter clone adhufec27 prokMSA_id:47165 AJ408990.1 human colonic clone HuCB6 prokMSA_id:58004 AB094174.1 feces adult human clone C-10 prokMSA_id:73331 AF357553.1 mpn-isolate group 5 prokMSA_id:86468 AF499894.1 human colonic mucosal biopsy clone ABLCf3 2.6.1.1.3.1.5577 OTU 2 seqs prokMSA_id:41973 AF371905.1 phylotype OTU-23 swine intestine clone p-1018-a5 prokMSA_id:52212 AF371906.1 phylotype OTU-23 swine intestine clone p-1091-a5 2.6.1.1.3.1.5597 OTU 3 seqs prokMSA_id:41169 AB078826.1 Bacteroidales str. KB3 prokMSA_id:45491 AB078831.1 Bacteroidales str. KB11 prokMSA_id:50178 AB078833.1 Bacteroidales str. KB13 2.6.1.1.3.1.5603 OTU 2 seqs prokMSA_id:2066 AF001731.1 rumen clone RC29 prokMSA_id:2075 AB009192.1 rumen clone RFN36 bacterium 2.6.1.1.3.1.5606 OTU 1 seq prokMSA_id:18221 AB034108.1 rumen clone 4C3d-6 2.6.1.1.3.1.5608 OTU 2 seqs prokMSA_id:2146 AF018491.1 rumen clone 12-118 prokMSA_id:2165 AF018533.1 rumen clone 30-39 2.6.1.1.3.1.5632 OTU 1 seq prokMSA_id:72142 AF132249.1 adult human fecal matter clone adhufec235 2.6.1.1.3.1.5646 OTU 1 seq prokMSA_id:49682 AF371886.1 phylotype OTU-231 swine intestine clone p-219-o5 2.6.1.1.3.1.5656 OTU 1 seq prokMSA_id:83963 AY244943.1 cow rumen clone BE19 2.6.1.1.3.1.5665 OTU 1 seq prokMSA_id:2204 AF018470.1 rumen clone 12-56 2.6.1.1.3.1.5668 OTU 1 seq prokMSA_id:84919 AY244921.1 cow rumen clone BE4 2.6.1.1.3.1.5670 OTU 1 seq prokMSA_id:2206 AF018483.1 rumen clone 12-104 2.6.1.1.3.1.5679 OTU 1 seq prokMSA_id:2103 AF018512.1 rumen clone 30-15 2.6.1.1.3.1.5686 OTU 3 seqs prokMSA_id:2068 AF001757.1 rumen clone RF25 prokMSA_id:84308 AY244951.1 cow rumen clone BE35 prokMSA_id:102005 AB185788.1 rumen clone U29-E10 2.6.1.1.3.1.5687 OTU 1 seq prokMSA_id:2213 AF018519.1 rumen clone 30-24 2.6.1.1.3.1.5690 OTU 1 seq prokMSA_id:2215 AF018543.1 rumen clone 30-49 2.6.1.1.3.1.5691 OTU 1 seq prokMSA_id:2105 AF018516.1 rumen clone 30-19 2.6.1.1.3.1.5692 OTU 1 seq prokMSA_id:2107 AF018531.1 rumen clone 30-37 2.6.1.1.3.1.5693 OTU 1 seq prokMSA_id:2108 AF018537.1 rumen clone 30-43 2.6.1.1.3.1.5694 OTU 1 seq prokMSA_id:2109 AF018538.1 rumen clone 30-44 2.6.1.1.3.1.5700 OTU 1 seq prokMSA_id:82767 AY244916.1 cow rumen clone BF38 2.6.1.1.3.1.5704 OTU 1 seq prokMSA_id:2225 AF018485.1 rumen clone 12-107 2.6.1.1.3.1.5705 OTU 1 seq prokMSA_id:42820 AY005055.1 subgingival dental plaque clone AO096 2.6.1.1.3.1.5706 OTU 2 seqs prokMSA_id:2224 U43698.1 oral cavity clone 3.3 prokMSA_id:45107 AY005056.1 subgingival dental plaque clone F045 2.6.1.1.3.1.5709 OTU 1 seq prokMSA_id:2110 AF018539.1 rumen clone 30-45 2.6.1.1.3.1.5710 OTU 1 seq prokMSA_id:2112 AF001703.1 rumen clone RC11 2.6.1.1.3.1.5711 OTU 1 seq prokMSA_id:2113 AF001705.1 rumen clone RC14 2.6.1.1.3.1.5716 OTU 2 seqs prokMSA_id:84248 AY244918.1 cow rumen clone BF40 prokMSA_id:86050 AY244934.1 cow rumen clone BE23 2.6.1.1.3.1.5718 OTU 9 seqs prokMSA_id:2046 AJ005634.1 Prevotella tannerae str. ATCC 51259 prokMSA_id:2047 U43699.1 oral cavity clone 3.42 prokMSA_id:28563 AF183403.1 Prevotella tannerae str. 29-1 prokMSA_id:30384 AF183402.1 Prevotella tannerae str. 131-9-1 prokMSA_id:35980 AF183404.1 Prevotella tannerae str. 83-10-2 prokMSA_id:37055 AF183406.1 Prevotella tannerae str. 93-1-2 prokMSA_id:38368 AF183405.1 Prevotella tannerae str. 89-9-1 prokMSA_id:63115 AY093466.1 deep marine sediment clone MB-A2-118 prokMSA_id:72923 AJ289169.1 corneal ulcer clone E1-K12 2.6.1.1.3.1.5720 OTU 1 seq prokMSA_id:68339 AF481227.1 Prevotella sp. str. E9_34 2.6.1.1.3.1.5721 OTU 1 seq prokMSA_id:2115 AF001714.1 rumen clone RC24 2.6.1.1.3.1.5723 OTU 1 seq prokMSA_id:2117 AF001752.1 rumen clone RF20 2.6.1.1.3.1.5724 OTU 1 seq prokMSA_id:2181 AJ005635.1 Prevotella enoeca str. ATCC 51261 2.6.1.1.3.1.5725 OTU 1 seq prokMSA_id:2118 AF001759.1 rumen clone RF27 2.6.1.1.3.1.5738 OTU 1 seq prokMSA_id:2184 AF018509.1 rumen clone 30-12 2.6.1.1.3.1.5741 OTU 1 seq prokMSA_id:2188 L16473.1 Prevotella veroralis 2.6.1.1.3.1.5746 OTU 2 seqs prokMSA_id:2121 AF001777.1 rumen clone RFN1 prokMSA_id:2124 AB009178.1 rumen clone RFN19 2.6.1.1.3.1.5756 OTU 16 seqs prokMSA_id:2197 X73965.1 Prevotella intermedia prokMSA_id:17066 AF414828.1 Prevotella intermedia str. 15-PIN prokMSA_id:18327 AF414825.1 Prevotella intermedia str. 35-PIN prokMSA_id:25390 AF414829.1 Prevotella intermedia str. 16-PIN prokMSA_id:28131 AF414824.1 Prevotella intermedia str. 32-PIN prokMSA_id:45410 AF414827.1 Prevotella intermedia str. 10-PIN prokMSA_id:70556 AF414831.1 Prevotella intermedia str. 23-PIN prokMSA_id:70907 AF414822.1 Prevotella intermedia str. 5-PIN prokMSA_id:70996 AF414832.1 Prevotella intermedia str. 24-PIN prokMSA_id:72112 AF414821.1 Prevotella intermedia str. ATCC 25611 prokMSA_id:72550 AF414823.1 Prevotella intermedia str. 6-PIN prokMSA_id:73101 AF414826.1 Prevotella intermedia str. 36-PIN prokMSA_id:74076 AF414830.1 Prevotella intermedia str. 22-PIN prokMSA_id:106249 AY689220.1 Prevotella intermedia str. ChDC KB2 prokMSA_id:106406 AY689221.1 Prevotella intermedia str. ChDC KB3 prokMSA_id:107185 AY689226.1 Prevotella intermedia str. ChDC KB53 2.6.1.1.3.1.5760 OTU 1 seq prokMSA_id:19299 AB045744.1 fiber rumen clone AAB11 2.6.1.1.3.1.5762 OTU 1 seq prokMSA_id:43544 AF371873.1 phylotype OTU-112 swine intestine clone p-2181-s959-3 2.6.1.1.3.1.5764 OTU 1 seq prokMSA_id:2125 AB009196.1 rumen clone RFN40 bacterium 2.6.1.1.3.1.5765 OTU 2 seqs prokMSA_id:2122 AB009170.1 rumen clone RFN11 prokMSA_id:2126 AB009223.1 rumen clone RFN75 bacterium 2.6.1.1.3.1.5766 OTU 1 seq prokMSA_id:2193 L16483.1 Prevotella disiens 2.6.1.1.3.1.5767 OTU 1 seq prokMSA_id:2129 AB009238.1 rumen clone RFN91 bacterium 2.6.1.1.3.1.5768 OTU 1 seq prokMSA_id:73517 AF385564.1 purified crevicular epithelial cells clone BU035 oral 2.6.1.1.3.1.5769 OTU 1 seq prokMSA_id:69843 AB081578.1 Bacteroidaceae str. A42 2.6.1.1.3.1.5803 OTU 5 seqs prokMSA_id:2073 AB009184.1 rumen clone RFN26 bacterium prokMSA_id:2076 AB009194.1 rumen clone RFN38 bacterium prokMSA_id:2077 AB009206.1 rumen clone RFN5 bacterium prokMSA_id:2082 AB009240.1 rumen clone RFN93 bacterium prokMSA_id:2083 AB009241.1 rumen clone RFN94 bacterium 2.6.1.1.3.1.5812 OTU 1 seq prokMSA_id:28413 AF371877.1 phylotype OTU-13 swine intestine clone p-1310-a5 2.6.1.1.3.1.5819 OTU 2 seqs prokMSA_id:73666 AF218617.1 Prevotella ruminicola str. TC2-3 prokMSA_id:73671 AF218618.1 Prevotella ruminicola str. 223/M2/7 2.6.1.1.3.1.5834 OTU 2 seqs prokMSA_id:83192 AY244907.1 cow rumen clone BF29 prokMSA_id:83664 AY244923.1 cow rumen clone BE6 2.6.1.1.3.1.5846 OTU 1 seq prokMSA_id:71701 AF357576.1 mpn-isolate group 3 2.6.1.1.3.1.5860 OTU 1 seq prokMSA_id:46566 AF371878.1 phylotype OTU-14 swine intestine clone p-863-a5 2.6.1.1.3.1.5864 OTU 1 seq prokMSA_id:71710 AF371898.1 phylotype OTU-21 swine intestine clone p-993-s962-5 2.6.1.1.3.1.5893 OTU 1 seq prokMSA_id:73324 AF385515.1 healthy and subjects with halitosis clone DO045 oral 2.6.1.1.3.1.5905 OTU 11 seqs prokMSA_id:2189 AF153867.1 faecal clone adhufec61.25 prokMSA_id:2190 AF153866.1 faecal clone adhufec41.25 prokMSA_id:26496 AF371893.1 phylotype OTU-16 swine intestine clone p-2443-18B5 prokMSA_id:29272 AF132282.1 adult human fecal matter clone adhufec94 prokMSA_id:29968 AF432133.1 tongue dorsum scrapings clone FM005 prokMSA_id:33062 AB050850.1 clone CA75 prokMSA_id:35402 AF385551.1 purified crevicular epithelial cells clone BE073 oral prokMSA_id:36894 AF371891.1 phylotype OTU-16 swine intestine clone p-1029-a5 prokMSA_id:38507 AF371890.1 phylotype OTU-16 swine intestine clone p-1980-s959-5 prokMSA_id:42963 AF132272.1 adult human fecal matter clone adhufec43 prokMSA_id:48738 AY028442.1 mpn-isolate group 1 2.6.1.1.3.1.5909 OTU 1 seq prokMSA_id:36031 AF371894.1 phylotype OTU-339 swine intestine clone p-3779-23G3 2.6.1.1.3.1.5916 OTU 1 seq prokMSA_id:83344 AY244931.1 cow rumen clone BE14 2.6.1.1.3.1.5917 OTU 1 seq prokMSA_id:46597 AB034100.1 rumen clone 6C3d-16 2.6.1.1.3.1.5920 OTU 1 seq prokMSA_id:17450 AB034104.1 rumen clone 4C3d-10 2.6.1.1.3.1.5926 OTU 10 seqs prokMSA_id:83241 AY244945.1 cow rumen clone BE30 prokMSA_id:84373 AY244909.1 cow rumen clone BF31 prokMSA_id:84424 AY244927.1 cow rumen clone BE10 prokMSA_id:84905 AY244932.1 cow rumen clone BE22 prokMSA_id:85274 AY244901.1 cow rumen clone BF23 prokMSA_id:85648 AY244948.1 cow rumen clone BE21 prokMSA_id:85887 AY244900.1 cow rumen clone BF22 prokMSA_id:85996 AY244906.1 cow rumen clone BF28 prokMSA_id:85999 AY244937.1 cow rumen clone BE17 prokMSA_id:86234 AY244946.1 cow rumen clone BE32 2.6.1.1.3.1.5927 OTU 1 seq prokMSA_id:2091 AF018438.1 rumen clone JW1 2.6.1.1.3.1.5929 OTU 3 seqs prokMSA_id:2200 AJ011683.1 Prevotella albensis str. M384 prokMSA_id:2202 AF018456.1 rumen clone 12-8 prokMSA_id:2216 AF040719.1 Prevotella sp. str. RZ 2.6.1.1.3.1.5940 OTU 1 seq prokMSA_id:55854 AF481226.1 Prevotella sp. str. E7_34 2.6.1.1.3.1.5946 OTU 1 seq prokMSA_id:72779 AF385511.1 healthy and subjects with halitosis clone DO027 oral 2.6.1.1.3.1.5949 OTU 1 seq prokMSA_id:31240 AF371881.1 phylotype OTU-15 swine intestine clone p-2173-s959-3 2.6.1.1.3.1.5966 OTU 1 seq prokMSA_id:26715 AJ315483.1 human colonic sample clone 2.6.1.1.3.1.5972 OTU 2 seqs prokMSA_id:2051 AF018460.1 rumen clone 12-16 prokMSA_id:2052 AF018481.1 rumen clone 12-102 2.6.1.1.3.1.5976 OTU 2 seqs prokMSA_id:31669 AB034103.1 rumen clone 4C3d-5 prokMSA_id:85859 AY244898.1 cow rumen clone BF20 2.6.1.1.3.1.5983 OTU 3 seqs prokMSA_id:39852 AF371897.1 phylotype OTU-344 swine intestine clone p-3951-23G5 prokMSA_id:45329 AF357552.1 mpn-isolate group 4 prokMSA_id:76393 AY158021.1 Prevotella sp. str. RS2 2.6.1.1.3.1.5985 OTU 1 seq prokMSA_id:43707 AB034102.1 rumen clone 6C3d-25 2.6.1.1.3.1.5986 OTU 1 seq prokMSA_id:69910 AF218619.1 Prevotella ruminicola str. TC2-28 2.6.1.1.3.1.6011 OTU 13 seqs prokMSA_id:83662 AY244922.1 cow rumen clone BE5 prokMSA_id:83826 AY244905.1 cow rumen clone BF27 prokMSA_id:84270 AY244929.1 cow rumen clone BE12 prokMSA_id:84471 AY244926.1 cow rumen clone BE9 prokMSA_id:84913 AY244911.1 cow rumen clone BF33 prokMSA_id:102469 AB185731.1 rumen clone U28-H03 prokMSA_id:103100 AB185591.1 rumen clone F24-B12 prokMSA_id:103448 AB185521.1 rumen clone F23-B08 prokMSA_id:105738 AB185633.1 rumen clone F24-F12 prokMSA_id:106191 AB185636.1 rumen clone F24-G04 prokMSA_id:106533 AB185566.1 rumen clone F23-H03 prokMSA_id:107238 AB185583.1 rumen clone F24-B03 prokMSA_id:107675 AB185586.1 rumen clone F24-B07 2.6.1.1.3.1.6018 OTU 1 seq prokMSA_id:68838 AF371885.1 phylotype OTU-299 swine intestine clone p-394-o3 2.6.1.1.3.1.6026 OTU 1 seq prokMSA_id:50936 AB078825.1 Bacteroidales str. KB1 2.6.1.1.3.1.6039 OTU 2 seqs prokMSA_id:2208 AF018486.1 rumen clone 12-109 prokMSA_id:36773 AB034149.1 rumen clone 4C28d-23 2.6.1.1.3.1.6045 OTU 16 seqs prokMSA_id:2198 X73963.1 Prevotella nigrescens prokMSA_id:34082 AJ289187.1 corneal ulcer clone E1-K11 prokMSA_id:35662 AF414834.1 Prevotella nigrescens str. 7-PNIG prokMSA_id:52068 AF414838.1 Prevotella nigrescens str. 37-PNIG prokMSA_id:70423 AF414841.1 Prevotella nigrescens prokMSA_id:70986 AF414839.1 Prevotella nigrescens str. 11-PNIG prokMSA_id:71190 AF414837.1 Prevotella nigrescens str. 31-PNIG prokMSA_id:71240 AF414836.1 Prevotella nigrescens str. 9-PNIG prokMSA_id:71569 AF414840.1 Prevotella nigrescens str. 13-PNIG prokMSA_id:72329 AF414835.1 Prevotella nigrescens str. 8-PNIG prokMSA_id:73458 AF414843.1 Prevotella nigrescens str. 20-PNIG prokMSA_id:73473 AF414833.1 Prevotella nigrescens str. ATCC 33563 prokMSA_id:73933 AF414842.1 Prevotella nigrescens str. 18-PNIG prokMSA_id:102425 AY689230.1 Prevotella nigrescens str. ChDC B270 prokMSA_id:107329 AY689227.1 Prevotella nigrescens str. ChDC KB5 prokMSA_id:107476 AY689228.1 Prevotella nigrescens str. ChDC KB6 2.6.1.1.3.1.6047 OTU 1 seq prokMSA_id:63123 AY093462.1 deep marine sediment clone MB-A2-107 2.6.1.1.3.1.6062 OTU 2 seqs prokMSA_id:25004 AF371887.1 phylotype OTU-19 swine intestine clone p-281-a3 prokMSA_id:47554 AF371888.1 phylotype OTU-19 swine intestine clone p-828-a5 2.6.1.1.3.1.6063 OTU 1 seq prokMSA_id:2120 AF001773.1 rumen clone RFP6 2.6.1.1.3.1.6066 OTU 1 seq prokMSA_id:83456 AY207061.1 human mouth isolate str. P4P_62 2.6.1.1.3.1.6072 OTU 2 seqs prokMSA_id:54330 AY005058.1 subgingival dental plaque clone AA016 prokMSA_id:73752 AY005057.1 subgingival dental plaque clone AA020 2.6.1.1.3.1.6073 OTU 1 seq prokMSA_id:17164 AB078830.1 Bacteroidales str. KB10 2.6.1.1.3.1.6091 OTU 1 seq prokMSA_id:82695 AY244950.1 cow rumen clone BE34 2.6.1.1.3.1.6092 OTU 2 seqs prokMSA_id:2119 AF001763.1 rumen clone RF31 prokMSA_id:85507 AY244904.1 cow rumen clone BF26 2.6.1.1.3.1.6095 OTU 1 seq prokMSA_id:22466 AF371872.1 phylotype OTU-112 swine intestine clone p-1297-a5 2.6.1.1.3.1.6107 OTU 1 seq prokMSA_id:2154 AF018518.1 rumen clone 30-23 2.6.1.1.3.1.6109 OTU 1 seq prokMSA_id:2159 AF018525.1 rumen clone 30-31 2.6.1.1.3.1.6110 OTU 2 seqs prokMSA_id:2102 AF018508.1 rumen clone 30-11 prokMSA_id:82965 AY244942.1 cow rumen clone BE28 2.6.1.1.3.1.6118 OTU 1 seq prokMSA_id:2054 AF018510.1 rumen clone 30-13 2.6.1.1.3.1.6119 OTU 1 seq prokMSA_id:2055 AF018511.1 rumen clone 30-14 2.6.1.1.3.1.6120 OTU 1 seq prokMSA_id:2056 AF018517.1 rumen clone 30-21 2.6.1.1.3.1.6125 OTU 2 seqs prokMSA_id:29831 AB078827.1 Bacteroidales str. KB7 prokMSA_id:30361 AB078832.1 Bacteroidales str. KB12 2.6.1.1.3.1.6127 OTU 2 seqs prokMSA_id:2116 AF001750.1 rumen clone RF18 prokMSA_id:2123 AB009174.1 rumen clone RFN15 bacterium 2.6.1.1.3.1.6152 OTU 1 seq prokMSA_id:2069 AF001768.1 rumen clone RF37 2.6.1.1.3.1.6166 OTU 4 seqs prokMSA_id:24338 AY005059.1 subgingival dental plaque clone AO009 prokMSA_id:71918 AF385554.1 purified crevicular epithelial cells clone BR014 oral prokMSA_id:88035 AY278625.1 Prevotella genomosp. C2 prokMSA_id:99666 AY550997.1 human carious dentine clone IDR-CEC-0055 2.6.1.1.3.1.6169 OTU 1 seq prokMSA_id:73255 AY005063.1 subgingival dental plaque clone CY006 2.6.1.1.3.1.6178 OTU 1 seq prokMSA_id:16549 AF371874.1 phylotype OTU-8 swine intestine clone p-1031-a5 2.6.1.1.3.1.6179 OTU 1 seq prokMSA_id:74407 AY005065.1 subgingival dental plaque clone DA058 2.6.1.1.3.1.6180 OTU 1 seq prokMSA_id:42406 AF371884.1 phylotype OTU-11 swine intestine clone p-185-o5 2.6.1.1.3.1.6182 OTU 1 seq prokMSA_id:2074 AB009187.1 rumen clone RFN29 bacterium 2.6.1.1.3.1.6193 OTU 1 seq prokMSA_id:2131 AF018439.1 rumen clone JW2 2.6.1.1.3.1.6198 OTU 3 seqs prokMSA_id:2132 AF018440.1 rumen clone JW7 prokMSA_id:102929 AB185734.1 rumen clone U28-H07 prokMSA_id:107222 AB185727.1 rumen clone U28-G08 2.6.1.1.3.1.6201 OTU 1 seq prokMSA_id:2133 AF018441.1 rumen clone JW9 2.6.1.1.3.1.6202 OTU 1 seq prokMSA_id:2134 AF018442.1 rumen clone JW10 2.6.1.1.3.1.6207 OTU 1 seq prokMSA_id:83758 AY244912.1 cow rumen clone BF34 2.6.1.1.3.1.6210 OTU 1 seq prokMSA_id:2137 AF018458.1 rumen clone 12-12 2.6.1.1.3.1.6212 OTU 1 seq prokMSA_id:82971 AY244925.1 cow rumen clone BE8 2.6.1.1.3.1.6213 OTU 1 seq prokMSA_id:2138 AF018465.1 rumen clone 12-39 2.6.1.1.3.1.6216 OTU 1 seq prokMSA_id:2139 AF018467.1 rumen clone 12-46 2.6.1.1.3.1.6223 OTU 1 seq prokMSA_id:2080 AB009235.1 rumen clone RFN89 bacterium 2.6.1.1.3.1.6232 OTU 1 seq prokMSA_id:31029 AJ408056.1 equine large intestine clone CL22 2.6.1.1.3.1.6234 OTU 1 seq prokMSA_id:2140 AF018469.1 rumen clone 12-51 2.6.1.1.3.1.6235 OTU 1 seq prokMSA_id:2144 AF018488.1 rumen clone 12-112 2.6.1.1.3.1.6236 OTU 1 seq prokMSA_id:2147 AF018494.1 rumen clone 12-125 2.6.1.1.3.1.6237 OTU 1 seq prokMSA_id:2148 AF018498.1 rumen clone 12-130 2.6.1.1.3.1.6238 OTU 1 seq prokMSA_id:2149 AF018501.1 rumen clone 30-3 2.6.1.1.3.1.6239 OTU 1 seq prokMSA_id:72590 AF385512.1 healthy and subjects with halitosis clone DO033 oral 2.6.1.1.3.1.6240 OTU 1 seq prokMSA_id:71561 AF371899.1 phylotype OTU-22 swine intestine clone p-1864-s962-3 2.6.1.1.3.1.6259 OTU 1 seq prokMSA_id:2150 AF018504.1 rumen clone 30-6 2.6.1.1.3.1.6260 OTU 1 seq prokMSA_id:2151 AF018507.1 rumen clone 30-10 2.6.1.1.3.1.6264 OTU 1 seq prokMSA_id:2092 AF018447.1 rumen clone JW20 2.6.1.1.3.1.6266 OTU 1 seq prokMSA_id:2093 AF018450.1 rumen clone JW31 2.6.1.1.3.1.6271 OTU 1 seq prokMSA_id:85799 AY244896.1 cow rumen clone BF18 2.6.1.1.3.1.6275 OTU 1 seq prokMSA_id:33010 AF371880.1 phylotype OTU-15 swine intestine clone p-2407-55G5 2.6.1.1.3.1.6283 OTU 1 seq prokMSA_id:24907 AF371875.1 phylotype OTU-9 swine intestine clone p-2190-s959-3 2.6.1.1.3.1.6286 OTU 1 seq prokMSA_id:2152 AF018514.1 rumen clone 30-17 2.6.1.1.3.1.6287 OTU 1 seq prokMSA_id:2153 AF018515.1 rumen clone 30-18 2.6.1.1.3.1.6290 OTU 1 seq prokMSA_id:2157 AF018523.1 rumen clone 30-29 2.6.1.1.3.1.6291 OTU 1 seq prokMSA_id:2094 AF018459.1 rumen clone 12-15 2.6.1.1.3.1.6292 OTU 1 seq prokMSA_id:2158 AF018524.1 rumen clone 30-30 2.6.1.1.3.1.6293 OTU 1 seq prokMSA_id:2095 AF018468.1 rumen clone 12-50 2.6.1.1.3.1.6294 OTU 1 seq prokMSA_id:2098 AF018496.1 rumen clone 12-127 2.6.1.1.3.1.6295 OTU 1 seq prokMSA_id:2099 AF018499.1 rumen clone 12-132 2.6.1.1.3.1.6308 OTU 1 seq prokMSA_id:72956 AF018487.1 rumen clone 12-111 2.6.1.1.3.1.6316 OTU 1 seq prokMSA_id:2161 AF018527.1 rumen clone 30-33 2.6.1.1.4 Rikenellaceae 43 seqs 2.6.1.1.4.1 sf_5 43 seqs 2.6.1.1.4.1.5356 OTU 1 seq prokMSA_id:77203 AJ519404.1 uranium mining waste pile clone JG37-AG-150 sp. 2.6.1.1.4.1.5361 OTU 1 seq prokMSA_id:27877 AJ290056.1 Germany: Lake Fuchskuhle north basin clone FukuN63 FukuN63 2.6.1.1.4.1.5376 OTU 1 seq prokMSA_id:1954 AF001694.1 rumen clone RC2 2.6.1.1.4.1.5452 OTU 1 seq prokMSA_id:21213 AF371920.1 phylotype OTU-256 swine intestine clone p-1628-c5 2.6.1.1.4.1.5471 OTU 1 seq prokMSA_id:32729 AF414569.1 clone P3IB-39 2.6.1.1.4.1.5540 OTU 1 seq prokMSA_id:49501 AF351234.1 coal tar waste-contaminated groundwater clone 8-1 bacterium 2.6.1.1.4.1.5554 OTU 1 seq prokMSA_id:52441 AF371923.1 phylotype OTU-37 swine intestine clone p-2158-s959-3 2.6.1.1.4.1.5585 OTU 1 seq prokMSA_id:2473 AF142822.1 clone BURTON-2 2.6.1.1.4.1.5804 OTU 1 seq prokMSA_id:40523 AF371922.1 phylotype OTU-36 swine intestine clone p-262-o5 2.6.1.1.4.1.5808 OTU 1 seq prokMSA_id:1901 AF154059.1 Eubostrichus dianae epibacterium 1_60 2.6.1.1.4.1.5809 OTU 1 seq prokMSA_id:1902 AF142901.1 clone EKHO-19 2.6.1.1.4.1.5851 OTU 1 seq prokMSA_id:28923 AJ408254.1 equine large intestine clone PW08 2.6.1.1.4.1.5855 OTU 1 seq prokMSA_id:1912 AB015532.1 deep-sea sediment clone BD2-2 2.6.1.1.4.1.5865 OTU 1 seq prokMSA_id:1918 AF050543.1 contaminated aquifer clone WCHB1-32 2.6.1.1.4.1.5882 OTU 1 seq prokMSA_id:1920 AF142974.1 clone TAYNAYA-26 2.6.1.1.4.1.5883 OTU 1 seq prokMSA_id:1921 AF029039.1 Benzene mineralizing consortium complete clone SB-1 consortium 2.6.1.1.4.1.5889 OTU 1 seq prokMSA_id:77794 AB088945.1 termite gut homogenate clone Rs-F73 bacterium 2.6.1.1.4.1.5892 OTU 2 seqs prokMSA_id:33956 AJ229182.1 anoxic bulk soil flooded rice microcosm clone BSV13 clone prokMSA_id:40718 AJ229217.1 anoxic bulk soil flooded rice microcosm clone BSV73 2.6.1.1.4.1.5945 OTU 1 seq prokMSA_id:83262 AY208811.1 cave microbial mats clone LKC2.127-25 2.6.1.1.4.1.5947 OTU 1 seq prokMSA_id:57462 AJ441218.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 221 bacterium 2.6.1.1.4.1.6025 OTU 1 seq prokMSA_id:38895 AF371919.1 phylotype OTU-39 swine intestine clone p-2202-s959-3 2.6.1.1.4.1.6032 OTU 4 seqs prokMSA_id:34085 AJ408997.1 human colonic clone HuCB23 prokMSA_id:61057 AF530340.1 Crohn adult fecal flora clone cadhufec17d09sav prokMSA_id:109541 AJ518875.1 Bacteroides sp. str. ANH 2438 prokMSA_id:110313 AJ518872.1 Bacteroides sp. str. CCUG 39913 2.6.1.1.4.1.6096 OTU 1 seq prokMSA_id:19478 AB056672.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT14 2.6.1.1.4.1.6134 OTU 1 seq prokMSA_id:1882 AF001747.1 rumen clone RF15 2.6.1.1.4.1.6135 OTU 1 seq prokMSA_id:1883 AF001760.1 rumen clone RF28 2.6.1.1.4.1.6137 OTU 1 seq prokMSA_id:1884 AF050544.1 contaminated aquifer clone WCHB1-29 2.6.1.1.4.1.6139 OTU 1 seq prokMSA_id:1886 AF018443.1 rumen clone JW12 2.6.1.1.4.1.6155 OTU 1 seq prokMSA_id:1895 AF121885.1 phenol-degrading consortium clone Phenol-4 2.6.1.1.4.1.6173 OTU 2 seqs prokMSA_id:23709 AY005071.1 subgingival dental plaque clone DA064 prokMSA_id:55622 AF481207.1 E3 clone MCE7_120 2.6.1.1.4.1.6277 OTU 1 seq prokMSA_id:28192 AJ249109.1 SHA-7 clone 2.6.1.1.4.1.6278 OTU 6 seqs prokMSA_id:1905 AF047618.1 Sulphur River Parker Cave Kentucky clone SRang1.29 prokMSA_id:1907 AJ229236.1 str. PB90-2 prokMSA_id:1908 AJ229237.1 str. XB45 prokMSA_id:51120 AJ229229.1 anoxic bulk soil flooded rice microcosm clone BSV85 prokMSA_id:81805 AY218577.1 penguin droppings sediments clone KD2-16 prokMSA_id:101020 AY188321.1 penguin droppings sediment clone KD6-12 2.6.1.1.4.1.6282 OTU 1 seq prokMSA_id:41715 AF254391.1 4MB-degrading consortium clone UASB_TL13 2.6.1.1.4.1.6317 OTU 1 seq prokMSA_id:75260 AJ534686.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN128 2.6.1.1.5 Unclassified 121 seqs 2.6.1.1.5.1 sf_15 118 seqs 2.6.1.1.5.1.5247 OTU 1 seq prokMSA_id:70461 AF132281.1 adult human fecal matter clone adhufec84 2.6.1.1.5.1.5257 OTU 1 seq prokMSA_id:80463 AY188307.1 marine? clone KD3-67 2.6.1.1.5.1.5299 OTU 1 seq prokMSA_id:2033 AF153868.1 clone adhufec12.25 2.6.1.1.5.1.5303 OTU 1 seq prokMSA_id:2036 AF001778.1 rumen clone RFN2 2.6.1.1.5.1.5316 OTU 1 seq prokMSA_id:78000 AB088919.2 termite gut homogenate clone Rs-P82 bacterium 2.6.1.1.5.1.5319 OTU 1 seq prokMSA_id:38438 AJ400234.2 mouse feces clone F1 2.6.1.1.5.1.5351 OTU 1 seq prokMSA_id:78300 AB088934.2 termite gut homogenate clone Rs-F63 bacterium 2.6.1.1.5.1.5353 OTU 1 seq prokMSA_id:62390 AF529128.1 trichloroethene-contaminated site clone FTLpost3 bacterium 2.6.1.1.5.1.5355 OTU 1 seq prokMSA_id:66951 AJ306736.1 DCP-dechlorinating consortium clone SHA-5 2.6.1.1.5.1.5379 OTU 1 seq prokMSA_id:1957 AF001767.1 rumen clone RF36 2.6.1.1.5.1.5385 OTU 1 seq prokMSA_id:18983 AJ400235.2 Feces clone F2 2.6.1.1.5.1.5388 OTU 1 seq prokMSA_id:2201 AB009211.1 rumen clone RFN64 bacterium 2.6.1.1.5.1.5390 OTU 1 seq prokMSA_id:24616 AB056644.1 fiber rumen clone AAB30 2.6.1.1.5.1.5392 OTU 1 seq prokMSA_id:1958 AB009231.1 rumen clone RFN84 bacterium 2.6.1.1.5.1.5393 OTU 1 seq prokMSA_id:1959 AB009243.1 rumen clone RFN96 bacterium 2.6.1.1.5.1.5410 OTU 1 seq prokMSA_id:66165 AJ488099.1 chlorobenzene-degrading consortium clone IIIB-28 2.6.1.1.5.1.5419 OTU 2 seqs prokMSA_id:79223 AB100010.1 inactive deep-sea hydrothermal vent chimneys clone IndB4-9 prokMSA_id:79430 AB100009.1 inactive deep-sea hydrothermal vent chimneys clone IndB4-4 2.6.1.1.5.1.5443 OTU 1 seq prokMSA_id:27268 AJ249107.1 SHA-54 clone 2.6.1.1.5.1.5445 OTU 4 seqs prokMSA_id:83479 AY197409.1 Guaymas Basin hydrothermal vent sediments clone B03R023 prokMSA_id:84261 AY197403.1 Guaymas Basin hydrothermal vent sediments clone B03R006 prokMSA_id:85513 AY197401.1 Guaymas Basin hydrothermal vent sediments clone B02R020 prokMSA_id:86389 AY197390.1 Guaymas Basin hydrothermal vent sediments clone B01R026 2.6.1.1.5.1.5455 OTU 2 seqs prokMSA_id:16733 AF371912.1 phylotype OTU-35 swine intestine clone p-184-o5 prokMSA_id:49015 AF371913.1 phylotype OTU-35 swine intestine clone p-251-o5 2.6.1.1.5.1.5458 OTU 2 seqs prokMSA_id:81188 AY216439.1 temperate estuarine mud clone KM67 prokMSA_id:81507 AY216441.1 temperate estuarine mud clone KM93 2.6.1.1.5.1.5472 OTU 5 seqs prokMSA_id:81280 AY217435.1 TCE-dechlorinating microbial community clone 5D prokMSA_id:81298 AY217379.1 TCE-dechlorinating microbial community clone 1A prokMSA_id:81365 AY217434.1 TCE-dechlorinating microbial community clone 11A prokMSA_id:81837 AY217437.1 TCE-dechlorinating microbial community clone 9D prokMSA_id:82304 AY217409.1 TCE-dechlorinating microbial community clone 1E 2.6.1.1.5.1.5475 OTU 2 seqs prokMSA_id:16567 AJ249101.1 SHA-25 clone prokMSA_id:52484 AJ249105.1 SHA-38 clone 2.6.1.1.5.1.5476 OTU 2 seqs prokMSA_id:44489 AJ400266.2 Feces clone F5 prokMSA_id:49714 AJ400263.1 intestine clone S24-7 2.6.1.1.5.1.5481 OTU 1 seq prokMSA_id:77721 AJ535258.1 marine sediment above hydrate ridge clone Hyd89-72 bacterium 2.6.1.1.5.1.5483 OTU 4 seqs prokMSA_id:66176 AJ488087.1 chlorobenzene-degrading consortium clone IIB-27 prokMSA_id:66194 AJ488069.1 chlorobenzene-degrading consortium clone IA-12 prokMSA_id:75351 AJ534683.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN74 bacterium prokMSA_id:80087 AY188305.1 marine? clone KD3-5 2.6.1.1.5.1.5500 OTU 1 seq prokMSA_id:78229 AJ535228.1 marine sediment above hydrate ridge clone Hyd24-66 2.6.1.1.5.1.5502 OTU 2 seqs prokMSA_id:22459 AJ408963.1 human colonic clone HuCA7 prokMSA_id:74420 AF132279.1 adult human fecal matter clone adhufec73 2.6.1.1.5.1.5508 OTU 1 seq prokMSA_id:26171 AB045749.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT7 2.6.1.1.5.1.5511 OTU 1 seq prokMSA_id:78165 AJ535256.1 marine sediment above hydrate ridge clone Hyd-B2-1 bacterium 2.6.1.1.5.1.5516 OTU 2 seqs prokMSA_id:18150 AJ408049.1 equine large intestine clone CL14 prokMSA_id:28315 AJ408160.1 equine large intestine clone ML14 2.6.1.1.5.1.5544 OTU 1 seq prokMSA_id:80197 AY188304.1 marine? clone KD3-17 2.6.1.1.5.1.5562 OTU 1 seq prokMSA_id:78217 AB088941.1 termite gut homogenate clone Rs-P01 bacterium 2.6.1.1.5.1.5568 OTU 1 seq prokMSA_id:1899 AF050542.1 contaminated aquifer clone WCHA2-47 2.6.1.1.5.1.5573 OTU 1 seq prokMSA_id:78222 AB088930.1 termite gut homogenate clone Rs-D44 bacterium 2.6.1.1.5.1.5578 OTU 1 seq prokMSA_id:76499 AJ534685.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN91 2.6.1.1.5.1.5620 OTU 1 seq prokMSA_id:67837 AY082469.1 neutral pH mine biofilm clone 44a-B1-42 2.6.1.1.5.1.5635 OTU 1 seq prokMSA_id:81270 AY216455.1 temperate estuarine mud clone KM68 2.6.1.1.5.1.5650 OTU 1 seq prokMSA_id:49689 AJ307947.1 derived microbial 'pearl'- community clone sipK20 2.6.1.1.5.1.5666 OTU 1 seq prokMSA_id:30407 AJ408165.1 equine large intestine clone ML19 2.6.1.1.5.1.5676 OTU 1 seq prokMSA_id:37920 AJ408043.1 equine large intestine clone CL08 2.6.1.1.5.1.5698 OTU 1 seq prokMSA_id:2044 AF018497.1 rumen clone 12-129 2.6.1.1.5.1.5707 OTU 1 seq prokMSA_id:45081 AJ347762.2 brine-seawater interface clone ST-12K19 bacterium 2.6.1.1.5.1.5712 OTU 1 seq prokMSA_id:79287 AF382106.1 bacterioplankton clone ZA2623c 2.6.1.1.5.1.5749 OTU 1 seq prokMSA_id:81597 AY216454.1 temperate estuarine mud clone KM66 2.6.1.1.5.1.5779 OTU 1 seq prokMSA_id:42845 AF276459.1 PCB-contaminated St. Lawrence River sediment clone RFLP 51E 2.6.1.1.5.1.5782 OTU 1 seq prokMSA_id:75791 AF550591.1 Bacteroidetes Ko710 2.6.1.1.5.1.5783 OTU 1 seq prokMSA_id:62690 AF507869.2 Mono Lake at depth 35 m station 6 July 2000 clone ML635J-15 bacterium 2.6.1.1.5.1.5784 OTU 2 seqs prokMSA_id:83084 AY244965.1 cow rumen clone BS11 prokMSA_id:109402 AY838556.1 fruiting body Pleurotus eryngii clone PE01 2.6.1.1.5.1.5802 OTU 1 seq prokMSA_id:67037 AJ306738.1 DCP-dechlorinating consortium clone SHA-94 2.6.1.1.5.1.5816 OTU 1 seq prokMSA_id:56432 AJ441240.1 Paralvinella palmiformis mucus secretions clone P. palm 10 bacterium 2.6.1.1.5.1.5818 OTU 1 seq prokMSA_id:81604 AB100459.1 termite gut clone Rs-096 2.6.1.1.5.1.5820 OTU 1 seq prokMSA_id:84178 AY244902.1 cow rumen clone BF24 2.6.1.1.5.1.5823 OTU 1 seq prokMSA_id:26888 AF371907.1 phylotype OTU-24 swine intestine clone p-218-o5 2.6.1.1.5.1.5827 OTU 1 seq prokMSA_id:1906 U81712.2 anaerobic digestor clone vadinHA17 2.6.1.1.5.1.5830 OTU 1 seq prokMSA_id:1909 AJ007873.1 cytophagales clone LD21 2.6.1.1.5.1.5831 OTU 4 seqs prokMSA_id:43783 AY005070.1 subgingival dental plaque clone DA065 prokMSA_id:55917 AF481204.1 E2a clone MCE3_262 prokMSA_id:68353 AF481205.1 E2a clone MCE7_196 prokMSA_id:68354 AF481206.1 E2b clone MCE7_164 2.6.1.1.5.1.5835 OTU 1 seq prokMSA_id:38834 AJ400236.2 Feces clone F3 2.6.1.1.5.1.5874 OTU 1 seq prokMSA_id:57448 AJ441239.1 Paralvinella palmiformis mucus secretions clone P. palm 53 bacterium 2.6.1.1.5.1.5876 OTU 1 seq prokMSA_id:57463 AJ441221.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 33 bacterium 2.6.1.1.5.1.5880 OTU 1 seq prokMSA_id:82140 AY167327.1 Antarctic pack ice Weddell Sea Southern Ocean isolate str. ANT9285 ANT9285 2.6.1.1.5.1.5890 OTU 1 seq prokMSA_id:82372 AY218551.1 penguin droppings sediments clone KD1-125 2.6.1.1.5.1.5907 OTU 6 seqs prokMSA_id:1924 AB009193.1 rumen clone RFN37 bacterium prokMSA_id:1925 AB009207.1 rumen clone RFN50 bacterium prokMSA_id:1926 AB009209.1 rumen clone RFN6 prokMSA_id:1927 AB009226.1 rumen clone RFN79 bacterium prokMSA_id:17505 AB056641.1 fiber rumen clone AAB26 prokMSA_id:84958 AY244952.1 cow rumen clone BE36 2.6.1.1.5.1.5921 OTU 5 seqs prokMSA_id:34437 AF254396.1 4MB-degrading consortium clone UASB_TL54 prokMSA_id:109178 AB195890.1 Anaerobic sludge clone N12 prokMSA_id:109179 AB195891.1 Anaerobic sludge clone N13 prokMSA_id:109180 AB195892.1 Anaerobic sludge clone S46 prokMSA_id:109181 AB195893.1 Anaerobic sludge clone N30 2.6.1.1.5.1.5941 OTU 1 seq prokMSA_id:77883 AB088942.2 termite gut homogenate clone Rs-B45 bacterium 2.6.1.1.5.1.5957 OTU 1 seq prokMSA_id:57464 AJ441217.1 Paralvinella palmiformis mucus secretions clone P. palm C/ 20 bacterium 2.6.1.1.5.1.5988 OTU 1 seq prokMSA_id:42624 AJ296576.1 uranium mining mill tailing clone GR-WP33-68 GR-WP33-68 2.6.1.1.5.1.5993 OTU 1 seq prokMSA_id:81498 AB100456.1 termite gut clone Rs-003 2.6.1.1.5.1.5998 OTU 1 seq prokMSA_id:84869 AY244963.1 cow rumen clone BS9 2.6.1.1.5.1.6005 OTU 1 seq prokMSA_id:31264 AJ408100.1 equine large intestine clone DL13 2.6.1.1.5.1.6007 OTU 3 seqs prokMSA_id:74219 AF323778.1 benzoate-degrading consortium clone BA008 prokMSA_id:75921 AJ534684.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN90 bacterium prokMSA_id:80683 AY188300.1 marine? clone KD2-33 2.6.1.1.5.1.6013 OTU 2 seqs prokMSA_id:25521 AY005066.1 subgingival dental plaque clone X083 prokMSA_id:68356 AF481203.1 E1 clone MCE7_20 2.6.1.1.5.1.6029 OTU 1 seq prokMSA_id:83423 AY244886.1 cow rumen clone BF8 2.6.1.1.5.1.6046 OTU 1 seq prokMSA_id:66167 AJ488097.1 chlorobenzene-degrading consortium clone IIIB-1 2.6.1.1.5.1.6065 OTU 1 seq prokMSA_id:77973 AB088946.1 termite gut homogenate clone Rs-M91 bacterium 2.6.1.1.5.1.6069 OTU 1 seq prokMSA_id:44257 AJ289174.1 corneal ulcer clone E1-K9 2.6.1.1.5.1.6078 OTU 1 seq prokMSA_id:66189 AJ488076.1 chlorobenzene-degrading consortium clone IA-5 2.6.1.1.5.1.6086 OTU 1 seq prokMSA_id:77992 AB088924.2 termite gut homogenate clone Rs-K10 bacterium 2.6.1.1.5.1.6099 OTU 1 seq prokMSA_id:22467 AF419688.1 hydrothermal vent sediment clone CS_B047 2.6.1.1.5.1.6138 OTU 1 seq prokMSA_id:1885 U81676.2 anaerobic digestor clone BC27 2.6.1.1.5.1.6204 OTU 1 seq prokMSA_id:50289 AJ408259.1 equine large intestine clone PW13 2.6.1.1.5.1.6233 OTU 1 seq prokMSA_id:59562 AY134906.1 Bacteroidetes sp. oral clone FX069 2.6.1.1.5.1.6257 OTU 1 seq prokMSA_id:26475 AJ408127.1 equine large intestine clone DW02 2.6.1.1.5.1.6288 OTU 1 seq prokMSA_id:26510 AF376396.1 chicken cecum mucus clone 2.6.1.1.5.1.6324 OTU 1 seq prokMSA_id:82061 AY216445.1 temperate estuarine mud clone KM02 2.6.1.1.5.2 sf_16 1 seq 2.6.1.1.5.2.5574 OTU 1 seq prokMSA_id:78232 AB088944.3 termite gut homogenate clone Rs-E62 bacterium 2.6.1.1.5.3 sf_17 2 seqs 2.6.1.1.5.3.6187 OTU 2 seqs prokMSA_id:20062 AF323769.1 benzoate-degrading consortium clone BA141 prokMSA_id:48692 AF323762.2 benzoate-degrading consortium clone BA029 2.6.1.2 Unclassified 1 seq 2.6.1.2.1 Unclassified 1 seq 2.6.1.2.1.1 sf_1 1 seq 2.6.1.2.1.1.6080 OTU 1 seq prokMSA_id:79755 AB094817.1 subseafloor sediments Sea Okhotsk clone OHKB2.48 2.6.2 Flavobacteria 757 seqs 2.6.2.1 Flavobacteriales 757 seqs 2.6.2.1.1 Blattabacteriaceae 51 seqs 2.6.2.1.1.1 sf_1 51 seqs 2.6.2.1.1.1.5734 OTU 1 seq prokMSA_id:2237 Z35665.1 Mastotermes darwiniensis endosymbiont 2.6.2.1.1.1.5737 OTU 1 seq prokMSA_id:2238 X75626.1 Blattabacterium species 2.6.2.1.1.1.5739 OTU 1 seq prokMSA_id:2239 Z35666.1 Blattabacterium species 2.6.2.1.1.1.5776 OTU 1 seq prokMSA_id:2240 Y13889.1 Coleomegilla maculata male-killing endosymbiont male-killing 2.6.2.1.1.1.5777 OTU 1 seq prokMSA_id:2241 AJ009687.1 Flavobacterium sp 2.6.2.1.1.1.5778 OTU 1 seq prokMSA_id:2243 X75622.1 Blattabacterium species 2.6.2.1.1.1.5828 OTU 1 seq prokMSA_id:2235 Z35664.1 Blattabacterium species 2.6.2.1.1.1.6010 OTU 2 seqs prokMSA_id:2233 X75625.1 Blattabacterium species prokMSA_id:2234 X75624.1 Blattabacterium species 2.6.2.1.1.1.6141 OTU 3 seqs prokMSA_id:24514 AF363715.1 Blattabacterium relictus prokMSA_id:36262 AF322473.1 Blattabacterium relictus prokMSA_id:43163 AF310163.1 Blattabacterium relictus 2.6.2.1.1.1.6270 OTU 39 seqs prokMSA_id:2236 X96730.1 Blattabacterium sp prokMSA_id:16690 AF363711.1 Blattabacterium punctulatus prokMSA_id:16942 AF363693.1 Blattabacterium punctulatus 3 prokMSA_id:18153 AF322465.1 Blattabacterium punctulatus Cumberland prokMSA_id:18551 AF363705.1 Blattabacterium punctulatus prokMSA_id:18626 AF322467.1 Blattabacterium punctulatus Bear prokMSA_id:20670 AF322462.1 Blattabacterium punctulatus Cheaha prokMSA_id:21143 AF363691.1 Blattabacterium punctulatus 1 prokMSA_id:21150 AF363704.1 Blattabacterium punctulatus prokMSA_id:24181 AF363712.1 Blattabacterium punctulatus prokMSA_id:24910 AF363702.1 Blattabacterium punctulatus prokMSA_id:24997 AF363694.1 Blattabacterium punctulatus 4 prokMSA_id:25301 AF322468.1 Blattabacterium punctulatus Little prokMSA_id:27730 AF322471.1 Blattabacterium punctulatus Mountain prokMSA_id:27731 AF322466.1 Blattabacterium punctulatus Asheville prokMSA_id:29432 AF363708.1 Blattabacterium punctulatus prokMSA_id:30774 AF322463.1 Blattabacterium punctulatus DeSoto prokMSA_id:31782 AF363695.1 Blattabacterium punctulatus 5 prokMSA_id:32119 AF363710.1 Blattabacterium punctulatus 2 prokMSA_id:33549 AF322459.1 Blattabacterium punctulatus Cherry prokMSA_id:33965 AF322470.1 Blattabacterium punctulatus Monongahela prokMSA_id:35136 AF363701.1 Blattabacterium punctulatus 3 prokMSA_id:35277 AF363713.1 Blattabacterium punctulatus prokMSA_id:35615 AF363700.1 Blattabacterium punctulatus 2 prokMSA_id:37019 AF322469.1 Blattabacterium punctulatus prokMSA_id:37689 AF363696.1 Blattabacterium punctulatus 1 prokMSA_id:38143 AF322464.1 Blattabacterium punctulatus Daniel prokMSA_id:39069 AF322461.1 Blattabacterium punctulatus Buck prokMSA_id:40895 AF363707.1 Blattabacterium punctulatus 2 prokMSA_id:42526 AF322458.1 Blattabacterium punctulatus Vogel prokMSA_id:42631 AF363692.1 Blattabacterium punctulatus 2 prokMSA_id:43084 AF322460.1 Blattabacterium punctulatus way prokMSA_id:43690 AF363703.1 Blattabacterium punctulatus prokMSA_id:49951 AF363697.1 Blattabacterium punctulatus 2 prokMSA_id:50133 AF363698.1 Blattabacterium punctulatus 1 prokMSA_id:50389 AF363709.1 Blattabacterium punctulatus 1 prokMSA_id:50894 AF363699.1 Blattabacterium punctulatus 1 prokMSA_id:52027 AF310161.1 Blattabacterium punctulatus prokMSA_id:74844 AF363706.1 Blattabacterium punctulatus 1 2.6.2.1.2 Cryomorphaceae 1 seq 2.6.2.1.2.1 sf_1 1 seq 2.6.2.1.2.1.5400 OTU 1 seq prokMSA_id:58645 AB078042.1 Crocinitomix catalasitica str. IFO 15977 2.6.2.1.3 Flavobacteriaceae 688 seqs 2.6.2.1.3.1 sf_15 1 seq 2.6.2.1.3.1.5442 OTU 1 seq prokMSA_id:22322 AF328203.1 clone KS66 2.6.2.1.3.2 sf_1 683 seqs 2.6.2.1.3.2.5244 OTU 1 seq prokMSA_id:18678 AF424360.1 CFB group clone MERTZ_0CM_382 2.6.2.1.3.2.5251 OTU 5 seqs prokMSA_id:21361 AF195446.1 Flexibacter sp. str. kba19 prokMSA_id:22718 AB032504.1 Tenacibaculum mesophilum str. MBIC4357 prokMSA_id:31105 AB032501.1 Tenacibaculum mesophilum str. MBIC1140 prokMSA_id:44581 AB032502.1 Tenacibaculum mesophilum str. MBIC1543 prokMSA_id:52498 AB032503.1 Tenacibaculum mesophilum str. MBIC4356 2.6.2.1.3.2.5252 OTU 1 seq prokMSA_id:35713 AF286039.1 mercury and PCB contaminated saltmarsh sediment clone LCP-72 LCP-72 2.6.2.1.3.2.5255 OTU 1 seq prokMSA_id:19397 AY038758.1 epilithon clone TAF-A228 2.6.2.1.3.2.5261 OTU 2 seqs prokMSA_id:16309 AF316792.1 Crater Lake clone CL0-114 prokMSA_id:23279 AF316791.1 Crater Lake clone CL0-37 2.6.2.1.3.2.5263 OTU 1 seq prokMSA_id:71957 AF385494.1 subgingival plaque clone DZ074 2.6.2.1.3.2.5267 OTU 1 seq prokMSA_id:56043 AF406541.1 bacterioplankton clone AEGEAN_179 2.6.2.1.3.2.5268 OTU 1 seq prokMSA_id:27314 AF277550.1 polar sea ice clone McMurdo.124 2.6.2.1.3.2.5269 OTU 1 seq prokMSA_id:35795 AB077353.1 deep-sea sediment clone TYM--16 2.6.2.1.3.2.5276 OTU 1 seq prokMSA_id:17076 AY050493.1 Chryseobacterium indologenes str. SB1 2.6.2.1.3.2.5277 OTU 4 seqs prokMSA_id:20304 AJ319006.1 Finland:Central Finland clone A2 prokMSA_id:23404 AJ319018.1 Flavobacterium sp. str. IsoC1 infected tissue salmonid fish suffering flavobacterial diseases prokMSA_id:40777 AJ319017.1 Flavobacterium sp. str. IsoB1 infected tissue salmonid fish suffering flavobacterial diseases prokMSA_id:52496 AJ319015.1 Flavobacterium sp. str. IsoA1 infected tissue salmonid fish suffering flavobacterial diseases 2.6.2.1.3.2.5282 OTU 1 seq prokMSA_id:2299 AF090991.1 Flavobacterium psychrophilum str. ATCC49418 2.6.2.1.3.2.5296 OTU 2 seqs prokMSA_id:2371 Y17612.1 Coenonia anatina str. LMG 14382 prokMSA_id:31284 AF118419.1 Coenonia anatina str. 726-82 2.6.2.1.3.2.5297 OTU 1 seq prokMSA_id:83454 AY177724.1 Flavobacteriaceae TN 2.6.2.1.3.2.5300 OTU 2 seqs prokMSA_id:2383 L14637.1 Capnocytophaga canimorus prokMSA_id:2392 X97246.1 Capnocytophaga canimorsus str. ATCC 35979 2.6.2.1.3.2.5301 OTU 2 seqs prokMSA_id:2324 AF142862.1 clone BURTON-44 prokMSA_id:22560 AF424344.1 CFB group clone MERTZ_2CM_320 2.6.2.1.3.2.5317 OTU 27 seqs prokMSA_id:2352 U14586.1 Unknown prokMSA_id:2355 U85885.1 Polaribacter sp. str. IC063 prokMSA_id:2356 U85884.1 Polaribacter sp. str. IC066 prokMSA_id:2357 U73726.1 Polaribacter filamentus prokMSA_id:43476 AF354620.1 marine clone Arctic97A-15 prokMSA_id:44604 AJ400343.1 f cytometric sorted marine sample subpopulation 1 clone ZD0255 bacterium prokMSA_id:58630 AB078057.1 Tenacibaculum maritimum str. IFO 15946 prokMSA_id:61127 AF530135.1 Polaribacter sp. str. MGP-9 prokMSA_id:67335 AF493674.1 Polaribacter sp. str. SW007 prokMSA_id:70110 AF359539.1 Alexandrium tamarense PCC 173a prokMSA_id:79136 AY189722.1 Bacteroidetes isolate str. KMM 3938 prokMSA_id:79783 AF468426.1 Arctic sea ice ARK10177 prokMSA_id:79935 AF468414.1 Arctic sea ice ARK10121 prokMSA_id:80091 AF468409.1 Arctic sea ice ARK10048 prokMSA_id:80368 AF468415.1 Arctic sea ice ARK10124 prokMSA_id:80402 AY198117.1 Polaribacter sp. HLE prokMSA_id:80621 AF468413.1 Arctic sea ice ARK10105 prokMSA_id:81099 AY167314.1 Polaribacter irgensii str. ANT9044 prokMSA_id:81397 AY167324.1 Polaribacter sp. str. ANT9167 prokMSA_id:81422 AY167325.1 Polaribacter irgensii str. ANT9243 prokMSA_id:81705 AY165582.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-12 sea prokMSA_id:81910 AY165580.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-37 sea prokMSA_id:81957 AY167317.1 Polaribacter irgensii str. ANT9210 prokMSA_id:81979 AY167319.1 Polaribacter franzmannii str. ANT9260 prokMSA_id:82211 AY165564.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-55 sea prokMSA_id:84331 AF539759.1 Cellulophaga sp. str. E26 prokMSA_id:109110 AY794168.1 soil clone F3C72 2.6.2.1.3.2.5322 OTU 1 seq prokMSA_id:79594 AF382130.1 bacterioplankton clone ZA3907c 2.6.2.1.3.2.5324 OTU 1 seq prokMSA_id:22632 AF146231.1 clone CLEAR-5 2.6.2.1.3.2.5330 OTU 1 seq prokMSA_id:74645 AJ297467.1 Svalbard: Hornsund clone Sva0755 2.6.2.1.3.2.5335 OTU 2 seqs prokMSA_id:2419 U85881.1 Psychroflexus torquis str. ACAM623 prokMSA_id:2421 AF001365.1 Psychroflexus torquis str. ACAM627 2.6.2.1.3.2.5336 OTU 1 seq prokMSA_id:23658 AF277560.1 polar sea ice clone SIC.B8232 2.6.2.1.3.2.5339 OTU 1 seq prokMSA_id:70367 AY038762.1 epilithon clone TAF-A199 2.6.2.1.3.2.5341 OTU 1 seq prokMSA_id:44565 AY038744.1 epilithon clone TAF-A168 2.6.2.1.3.2.5352 OTU 45 seqs prokMSA_id:21663 AF207073.1 Chryseobacterium meningosepticum str. CIP 7830 prokMSA_id:24059 AF207070.1 Chryseobacterium meningosepticum str. PINT prokMSA_id:25313 AF207076.1 Chryseobacterium meningosepticum str. AB1572 prokMSA_id:26365 AF207074.1 Chryseobacterium meningosepticum str. CIP 79.5 prokMSA_id:27969 AF207075.1 Chryseobacterium meningosepticum str. CIP 6057 prokMSA_id:35949 AF207072.1 Chryseobacterium meningosepticum str. CIP 6059 prokMSA_id:36392 AF207071.1 Chryseobacterium meningosepticum str. CIP 6058 prokMSA_id:38477 AF207078.1 Chryseobacterium meningosepticum str. AMA prokMSA_id:45371 AF207077.1 Chryseobacterium meningosepticum str. HO1J100 prokMSA_id:45458 AF207079.1 Chryseobacterium meningosepticum str. GEO prokMSA_id:56180 AF532186.1 enrichment clone TCAA1 prokMSA_id:59359 AF502204.1 EBPR sludge lab scale clone HP1B06 prokMSA_id:59361 AF502203.1 EBPR sludge lab scale clone HP1A43 prokMSA_id:59466 AB071953.1 Chryseobacterium miricola str. GTC862 prokMSA_id:60999 AF531766.1 Candidatus Chryseobacterium massiliae isolate str. 90B massiliae prokMSA_id:62966 AF527584.1 EBPR sludge lab scale clone LPB28 prokMSA_id:63613 AY043370.1 Chryseobacterium sp. str. AU939 prokMSA_id:67365 AJ457206.2 Chryseobacterium daecheongense str. CPW406 prokMSA_id:67485 AF493696.1 Flavobacteriaceae EP105 prokMSA_id:78557 AJ534853.1 Chryseobacterium sp. DW3 prokMSA_id:82614 AY230767.1 Flavobacterium sp. 'Smarlab BioMol-2300973' str. Smarlab BioMol-2300973 'Smarlab prokMSA_id:89098 AY299974.1 Kaistella koreensis str. Ko10 prokMSA_id:90366 AY294611.1 Kaistella koreensis str. Ko2 prokMSA_id:91024 AY345495.1 Lake Waiau sediment clone W4-B50 prokMSA_id:91220 AY345404.1 Lake Kauhako water isolate str. K2-70 prokMSA_id:91713 AY336568.1 Chryseobacterium meningosepticum str. ATCC 13253 prokMSA_id:91756 AY345443.1 Lake Kauhako water isolate str. KA75 prokMSA_id:94931 AJ583192.1 ground water monitoring deep-well at radioactive waste disposal site clone S15D-MN4 prokMSA_id:99776 AY751083.1 Chryseobacterium sp. AUR9 prokMSA_id:100509 AY555780.1 Bor Khlueng hot spring clone PK25 prokMSA_id:100656 AY468454.1 Chryseobacterium sp. UOF CR2995 prokMSA_id:101397 AY468471.1 Chryseobacterium sp. JG-Torno prokMSA_id:101782 AJ704540.1 Chryseobacterium meningosepticum str. ATCC 13253 prokMSA_id:102191 AY427792.1 Chryseobacterium sp. str. UOF CO294 prokMSA_id:102390 AJ704544.1 Chryseobacterium meningosepticum str. ATCC 49470 prokMSA_id:104708 AY468445.1 Chryseobacterium meningosepticum str. 4027; ATCC13253; CIP 60.57; LMG 12279; NCTC 10016 prokMSA_id:105136 AJ630286.1 electricity-generating microbial fuel cell clone MFC-EB18 prokMSA_id:105567 AY468463.1 Chryseobacterium sp. FRGDSA 1502/97 prokMSA_id:105714 AY468464.1 Chryseobacterium sp. FRGDSA 4034/97 prokMSA_id:106275 AY468480.1 Chryseobacterium meningosepticum str. LMG 12280; ATCC13254; CIP 60.58; NCTC 10585 prokMSA_id:106490 AY612170.1 Riemerella anatipestifer str. PT9101-G1 prokMSA_id:106686 AY553294.1 Sejongia jeonii IMSNU 14049 prokMSA_id:107452 AF479331.1 glacial ice isolate str. CanDirty14 prokMSA_id:110654 AJ853509.1 landfill leachate clone GZKB14 prokMSA_id:111656 AY871820.1 Riemerella anatipestifer str. H-2565 2.6.2.1.3.2.5362 OTU 1 seq prokMSA_id:73938 AY038759.1 epilithon clone TAF-A144 2.6.2.1.3.2.5367 OTU 1 seq prokMSA_id:83488 AY238333.1 patient's bronchoalveolar lavage isolate str. MDA2507 sp. 2.6.2.1.3.2.5391 OTU 1 seq prokMSA_id:21369 AJ318198.1 Waste-gas biofilter clone BIwi5 2.6.2.1.3.2.5396 OTU 1 seq prokMSA_id:73211 AF359540.1 Alexandrium tamarense PCC 173a 2.6.2.1.3.2.5397 OTU 2 seqs prokMSA_id:27823 AF125324.1 Cytophaga sp. G22 prokMSA_id:71623 AJ244690.1 MM_2414 2.6.2.1.3.2.5399 OTU 5 seqs prokMSA_id:2323 X85210.1 Cytophaga sp. str. Type 0092 prokMSA_id:57758 AY154891.1 Flavobacterium sp. str. SC1 prokMSA_id:57759 AY154889.1 Flavobacterium sp. str. SR1 prokMSA_id:57760 AY154890.1 Flavobacterium sp. str. BR1 prokMSA_id:58641 AB078045.1 Flexibacter aurantiacus subsp. excathedrus str. IFO 16024 subsp. 2.6.2.1.3.2.5401 OTU 6 seqs prokMSA_id:2366 U41347.1 Capnocytophaga granulosa prokMSA_id:2368 X97248.1 Capnocytophaga granulosa str. ATCC 51502 prokMSA_id:2386 L14639.1 Capnocytophaga gingivalis prokMSA_id:58282 AF543295.1 Capnocytophaga gingivalis str. ChDC OS45 prokMSA_id:70530 AY005074.1 subgingival dental plaque clone AH015 prokMSA_id:102756 AY429468.1 Capnocytophaga sp. P1 oral clone P4GA_52 2.6.2.1.3.2.5407 OTU 1 seq prokMSA_id:16835 AY038574.1 clone CD2D6 2.6.2.1.3.2.5412 OTU 1 seq prokMSA_id:42267 AF424346.1 CFB group clone MERTZ_0CM_16 2.6.2.1.3.2.5423 OTU 6 seqs prokMSA_id:2407 AF170754.1 Aequorivita antarctica str. QSSC9-14 prokMSA_id:23255 AY027802.1 Aequorivita antarctica str. SW49T prokMSA_id:33316 AY027805.1 Aequorivita lipolytica str. Y10-2T prokMSA_id:39184 AY027806.1 Aequorivita crocea str. Y12-2T prokMSA_id:40585 AY027804.1 Aequorivita antarctica str. O9-2 prokMSA_id:52249 AY027803.1 Aequorivita antarctica str. G#5 2.6.2.1.3.2.5428 OTU 1 seq prokMSA_id:28913 AF277563.1 polar sea ice clone SIC.B9002 2.6.2.1.3.2.5431 OTU 1 seq prokMSA_id:46475 AF235117.1 Cytophaga sp. KT0803 str. KT0813 2.6.2.1.3.2.5434 OTU 2 seqs prokMSA_id:56208 AF543293.1 Capnocytophaga sp. str. ChDC OS43 prokMSA_id:58285 AF543294.1 Capnocytophaga sp. str. ChDC OS44 2.6.2.1.3.2.5435 OTU 4 seqs prokMSA_id:80388 AF468305.1 Arctic sea ice; northern Fram Strait clone ARKICE-35 prokMSA_id:81071 AY165589.1 pack ice northern Fram Strait Arctic Ocean clone ARKXV/1-43 sea prokMSA_id:81822 AY165587.1 pack ice northern Fram Strait Arctic Ocean clone ARKXV/1-139 sea prokMSA_id:82527 AJ440991.1 Gillisia limnaea str. R-8282 2.6.2.1.3.2.5436 OTU 6 seqs prokMSA_id:80029 AF468435.1 Arctic sea ice ARK9985 prokMSA_id:80722 AF468406.1 Arctic sea ice ARK10004 prokMSA_id:80782 AF468416.1 Arctic sea ice ARK10129 prokMSA_id:80936 AF468419.1 Arctic sea ice ARK10138 prokMSA_id:105274 AF468417.1 Arctic sea ice ARK10136 prokMSA_id:105421 AF468418.1 Arctic sea ice ARK10137 2.6.2.1.3.2.5446 OTU 1 seq prokMSA_id:32882 AB024308.1 Flavobacteriaceae str. 2 2.6.2.1.3.2.5451 OTU 1 seq prokMSA_id:36799 AY035869.1 Cellulophaga sp. str. ACEM20 2.6.2.1.3.2.5456 OTU 5 seqs prokMSA_id:2400 AJ005972.1 Cellulophaga baltica str. NN015840 () prokMSA_id:45411 AF235118.1 Cytophaga sp. str. KT02ds20 prokMSA_id:67189 AF497997.1 Cellulophaga sp. str. MM#3 prokMSA_id:71231 AF493681.1 Cellulophaga sp. str. SW285 prokMSA_id:83359 AF539753.1 Cytophaga sp. str. E4 2.6.2.1.3.2.5462 OTU 19 seqs prokMSA_id:17527 AF433174.1 Flavobacterium omnivorum str. AS 1.2747; JCM 11313 prokMSA_id:43638 AJ295520.1 rape rhizosphere clone wr0076 prokMSA_id:48501 AF260716.1 Cytophaga sp. str. P1 prokMSA_id:55662 AF493652.1 Flavobacterium sp. str. EP134 prokMSA_id:60350 AF534192.1 soil clone Glu1 prokMSA_id:67568 AF493667.1 Flavobacterium sp. str. EP360 prokMSA_id:67571 AF493666.1 Flavobacterium sp. str. EP136 prokMSA_id:67577 AF493653.1 Flavobacterium sp. str. EP372 prokMSA_id:69817 AF493662.1 Flavobacterium sp. str. EP300 prokMSA_id:69846 AF493651.1 Flavobacterium sp. str. EP306 prokMSA_id:70207 AF493640.1 Flavobacterium sp. str. EP233 prokMSA_id:70214 AF493644.1 Flavobacterium sp. str. EP241 prokMSA_id:70473 AF493660.1 Flavobacterium sp. str. EP246 prokMSA_id:70652 AF493650.1 Flavobacterium sp. str. EP297 prokMSA_id:71261 AF493663.1 Flavobacterium sp. str. EP328 prokMSA_id:71429 AF493646.1 Flavobacterium sp. str. EP251 prokMSA_id:71583 AF493656.1 Flavobacterium sp. str. EP204 prokMSA_id:73010 AF493649.1 Flavobacterium sp. str. EP101 prokMSA_id:73277 AF493661.1 Flavobacterium sp. str. EP286 2.6.2.1.3.2.5464 OTU 1 seq prokMSA_id:50817 AF388892.1 Flavobacteriaceae clone GOBB3-CL282 2.6.2.1.3.2.5470 OTU 1 seq prokMSA_id:63469 AJ495802.1 Chryseobacterium sp. p20H 2.6.2.1.3.2.5473 OTU 3 seqs prokMSA_id:74154 AF493688.1 Flavobacteriaceae str. SW256 prokMSA_id:85471 AF539755.1 marine isolate str. R43 prokMSA_id:88683 AY298788.1 Flavobacteriaceae isolate str. G812M2 2.6.2.1.3.2.5479 OTU 9 seqs prokMSA_id:30411 AF433173.1 Flavobacterium xinjiangense str. AS 1.2749; JCM 11314 prokMSA_id:34165 AB075232.1 Flavobacterium limicola str. ST-92 prokMSA_id:36697 AB075231.1 Flavobacterium limicola str. ST-10 prokMSA_id:41560 AJ297440.1 Flavobacterium aff. xylanivorum str. A1/C-aer/OIV xylanivorum prokMSA_id:52347 AB075230.1 Flavobacterium limicola str. ST-82 prokMSA_id:80159 AF468434.1 Arctic sea ice ARK10287 prokMSA_id:81617 AY167338.1 Arctic pack ice isolate str. ARK10264 prokMSA_id:83757 AJ440988.1 Flavobacterium frigoris str. LMG 21471 prokMSA_id:85147 AJ440979.1 lake microbial mat isolate str. R-7550 2.6.2.1.3.2.5480 OTU 1 seq prokMSA_id:77276 AJ318907.2 ED5 earthworm gut 2.6.2.1.3.2.5482 OTU 1 seq prokMSA_id:73509 AF493664.1 Flavobacterium sp. str. EP333 2.6.2.1.3.2.5485 OTU 1 seq prokMSA_id:44265 AJ289998.1 Germany: Lake Fuchskuhle north basin clone FukuN36 FukuN36 2.6.2.1.3.2.5486 OTU 1 seq prokMSA_id:2300 AF087077.1 clone MK06 2.6.2.1.3.2.5487 OTU 1 seq prokMSA_id:2301 AF087066.1 clone MK08 2.6.2.1.3.2.5488 OTU 1 seq prokMSA_id:20283 AF142868.1 clone BURTON-50 2.6.2.1.3.2.5490 OTU 1 seq prokMSA_id:47437 AF321046.1 CFB group isolate str. GOBB3-308 2.6.2.1.3.2.5495 OTU 1 seq prokMSA_id:75303 AY157745.1 Chryseobacterium sp. kr6 2.6.2.1.3.2.5499 OTU 1 seq prokMSA_id:78228 AJ535222.1 marine sediment above hydrate ridge clone Hyd24-2-2 bacterium 2.6.2.1.3.2.5503 OTU 1 seq prokMSA_id:76628 AF550590.1 Bacteroidetes Ko706 2.6.2.1.3.2.5505 OTU 2 seqs prokMSA_id:31168 AF375837.1 Chryseobacterium sp. str. dU1 prokMSA_id:48960 AF375838.1 Chryseobacterium sp. str. dU3 2.6.2.1.3.2.5507 OTU 1 seq prokMSA_id:19411 AF277524.1 polar sea ice clone SIC.10332 2.6.2.1.3.2.5509 OTU 1 seq prokMSA_id:82529 AF539756.1 Cellulophaga sp. str. E14 2.6.2.1.3.2.5517 OTU 1 seq prokMSA_id:26631 AF205367.1 Gelidibacter sp. str. QSSC5-7 2.6.2.1.3.2.5518 OTU 1 seq prokMSA_id:2447 AF142870.1 clone BURTON-52 2.6.2.1.3.2.5521 OTU 1 seq prokMSA_id:72771 AF493689.1 Flavobacteriaceae str. SW269 2.6.2.1.3.2.5526 OTU 1 seq prokMSA_id:2382 X67608.1 Capnocytophaga gingivalis 2.6.2.1.3.2.5531 OTU 1 seq prokMSA_id:2313 AF170737.1 Gelidibacter sp. str. QSSC1-21 2.6.2.1.3.2.5533 OTU 2 seqs prokMSA_id:2285 AJ223455.1 SS2 prokMSA_id:2286 AJ223454.1 Myroides sp. SS1 2.6.2.1.3.2.5535 OTU 2 seqs prokMSA_id:43886 AF406663.1 Flavobacterium sp. str. A14-B19 A14 prokMSA_id:74496 AB027704.1 Flavobacterium sp. str. B17 2.6.2.1.3.2.5536 OTU 1 seq prokMSA_id:2314 AF170749.1 Aequorivita sublithincola str. QSSC9-3 2.6.2.1.3.2.5538 OTU 1 seq prokMSA_id:54172 AF142951.1 clone TAYNAYA-5 2.6.2.1.3.2.5548 OTU 1 seq prokMSA_id:2452 AF001368.1 marine psychrophile str. SW17 2.6.2.1.3.2.5550 OTU 1 seq prokMSA_id:49506 AB032514.1 this has Porifera isolate str. MBIC1357 2.6.2.1.3.2.5555 OTU 1 seq prokMSA_id:26642 AJ318119.1 Waste-gas biofilter clone BIfcii29 2.6.2.1.3.2.5559 OTU 1 seq prokMSA_id:2460 AF142850.1 clone BURTON-32 2.6.2.1.3.2.5561 OTU 1 seq prokMSA_id:2461 AF142833.1 clone BURTON-13 2.6.2.1.3.2.5569 OTU 1 seq prokMSA_id:2399 AF142846.1 clone BURTON-28 2.6.2.1.3.2.5570 OTU 1 seq prokMSA_id:2462 AB017597.1 Flavobacterium sp. str. 5N-3 2.6.2.1.3.2.5571 OTU 1 seq prokMSA_id:2463 AB015545.1 deep-sea sediment clone BD2-17 2.6.2.1.3.2.5588 OTU 1 seq prokMSA_id:44727 AF321042.1 Flavobacterium sp. str. GOBB3-109 2.6.2.1.3.2.5589 OTU 1 seq prokMSA_id:78012 AY172238.1 2.6.2.1.3.2.5590 OTU 1 seq prokMSA_id:82700 AJ441001.1 lake microbial mat isolate str. R-9033 2.6.2.1.3.2.5591 OTU 1 seq prokMSA_id:36868 AF355051.1 marine clone Arctic97A-14 2.6.2.1.3.2.5598 OTU 3 seqs prokMSA_id:61975 AJ244697.1 Flavobacterium sp. str. V4.MO.31 = MM_2941 V4.MO.31 prokMSA_id:61980 AJ244691.1 Flavobacterium sp. str. V4.BO.21 = MM_2370 V4.BO.21 prokMSA_id:70361 AJ244696.1 Flavobacterium sp. str. V4.ME.09 = MM_2295 V4.ME.09 2.6.2.1.3.2.5615 OTU 1 seq prokMSA_id:71577 AF289165.1 freshwater clone PRD01b005B 2.6.2.1.3.2.5618 OTU 1 seq prokMSA_id:43791 AF465362.1 Flexibacter sp. str. UST991130-045 2.6.2.1.3.2.5622 OTU 2 seqs prokMSA_id:80973 AF468422.1 Arctic sea ice ARK10146 prokMSA_id:112807 AY922218.1 orange microbial mat on grey whale carcass Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131712 2.6.2.1.3.2.5628 OTU 1 seq prokMSA_id:44039 AF190220.1 directly dinoflagellate CCMP 1829 clone RSHD3B4 2.6.2.1.3.2.5629 OTU 1 seq prokMSA_id:21005 AB039830.1 Chryseobacterium proteolyticum str. 9670 2.6.2.1.3.2.5630 OTU 4 seqs prokMSA_id:71519 Z88574.2 HOS12 prokMSA_id:86285 AY274838.1 Delaware River estuary clone 1D10 prokMSA_id:104327 AY697868.1 Antarctica clone F1CA12 prokMSA_id:109145 AY794206.1 soil clone F4C41 2.6.2.1.3.2.5636 OTU 3 seqs prokMSA_id:2438 U62913.1 Psychroserpens burtonensis str. ACAM188 prokMSA_id:2445 U62911.1 Psychroserpens burtonensis str. ACAM167 prokMSA_id:2446 U62912.1 Psychroserpens burtonensis str. ACAM181 2.6.2.1.3.2.5641 OTU 1 seq prokMSA_id:30581 AF424336.1 CFB group clone MERTZ_2CM_80 2.6.2.1.3.2.5645 OTU 1 seq prokMSA_id:70542 AF366270.1 derived supragingival plaque on tooth surfaces clone DS022 sp. 2.6.2.1.3.2.5653 OTU 1 seq prokMSA_id:19303 AJ271010.1 Chryseobacterium joostei str. LMG 18212 2.6.2.1.3.2.5657 OTU 1 seq prokMSA_id:18364 AF354618.1 marine clone Arctic97A-13 2.6.2.1.3.2.5659 OTU 1 seq prokMSA_id:27077 AF170786.1 Flavobacteriaceae clone QSSC9L-8 2.6.2.1.3.2.5660 OTU 1 seq prokMSA_id:25083 AF259632.1 Philippines clone 13 2.6.2.1.3.2.5661 OTU 1 seq prokMSA_id:21882 AF260322.1 Antarctica: South Pole isolate str. Spd2B_4 2.6.2.1.3.2.5663 OTU 1 seq prokMSA_id:83115 AF539754.1 Cytophaga sp. str. E46 2.6.2.1.3.2.5671 OTU 1 seq prokMSA_id:85577 AY274863.1 Delaware River estuary clone CF96 2.6.2.1.3.2.5675 OTU 1 seq prokMSA_id:25476 AY038745.1 epilithon clone TAF-A35 2.6.2.1.3.2.5688 OTU 1 seq prokMSA_id:86531 AY243096.1 Ulvibacter litoralis str. KMM 3912 2.6.2.1.3.2.5695 OTU 1 seq prokMSA_id:77676 AJ535225.1 marine sediment above hydrate ridge clone Hyd24-41 bacterium 2.6.2.1.3.2.5697 OTU 1 seq prokMSA_id:49407 AF427479.1 Cytophaga sp. str. 41-DBG2 2.6.2.1.3.2.5714 OTU 2 seqs prokMSA_id:69811 AF521195.1 Brumimicrobium glaciale str. ACAM 644 prokMSA_id:70335 AF530156.1 Cf. Cytophaga sp. isolate str. MGP-8AN 2.6.2.1.3.2.5726 OTU 1 seq prokMSA_id:71901 AY008691.1 Bergeyella sp. oral AK152 clone 2.6.2.1.3.2.5727 OTU 5 seqs prokMSA_id:2424 AF142908.1 clone ORGANIC-6 prokMSA_id:60400 AF513434.2 Psychroflexus tropicus str. LA1 prokMSA_id:62484 AF513956.1 CFB group clone LA1-A3N prokMSA_id:62485 AF513959.1 Flavobacteriaceae clone LA1-B21N prokMSA_id:62486 AF513958.1 Flavobacteriaceae clone LAS-B39N 2.6.2.1.3.2.5730 OTU 1 seq prokMSA_id:81435 AJ548899.1 clone BIOEST-10 2.6.2.1.3.2.5733 OTU 7 seqs prokMSA_id:53677 AF277558.1 polar sea ice clone SIC.B8113 prokMSA_id:79769 AF468244.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-74 prokMSA_id:80367 AF468265.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKCH4-88 prokMSA_id:80618 AF468408.1 Arctic sea ice ARK10044 prokMSA_id:80944 AF468428.1 Arctic sea ice ARK10223 prokMSA_id:81144 AY167316.1 Antarctic pack ice Weddell Sea Southern Ocean isolate str. ANT9105 ANT9105 prokMSA_id:81534 AY165581.1 Antarctic pack ice Lasarev Sea Southern Ocean clone ANTXI/4_14-81 sea 2.6.2.1.3.2.5742 OTU 1 seq prokMSA_id:46038 AF277543.1 polar sea ice clone ARCTIC.16 2.6.2.1.3.2.5750 OTU 2 seqs prokMSA_id:19998 AF321019.2 Flavobacterium sp. str. GOBB3-C103-3 prokMSA_id:37648 AF321008.2 Flavobacterium sp. str. GOBB3-C101 2.6.2.1.3.2.5757 OTU 1 seq prokMSA_id:51701 AF354616.1 marine clone Arctic96B-24 2.6.2.1.3.2.5758 OTU 1 seq prokMSA_id:61125 AF530136.1 Tenacibaculum sp. str. MGP-10 2.6.2.1.3.2.5788 OTU 2 seqs prokMSA_id:19452 X85207.1 Type 1863 bulking filament prokMSA_id:21236 X85208.1 Type 1863 isolate str. F006C 2.6.2.1.3.2.5797 OTU 1 seq prokMSA_id:20686 AY038760.1 epilithon clone TAF-A70 2.6.2.1.3.2.5801 OTU 5 seqs prokMSA_id:23725 AJ391201.1 Flavobacterium sp. str. AS-40 prokMSA_id:46941 AF218782.1 Muricauda ruestringensis str. B1 prokMSA_id:51895 AF386740.1 Flavobacterium sp. str. 7BT prokMSA_id:60401 AF513435.1 Flavobacteriaceae isolate str. LA8 prokMSA_id:70926 AB073562.2 Cytophaga sp. str. MBIC04684 2.6.2.1.3.2.5807 OTU 1 seq prokMSA_id:40211 AF446285.1 USA: Yellowstone National Park Mammoth Hot Springs Angel Terrace clone FL13A12 2.6.2.1.3.2.5821 OTU 1 seq prokMSA_id:44589 AY038751.1 epilithon clone TAF-A38 2.6.2.1.3.2.5836 OTU 1 seq prokMSA_id:2377 U41348.1 Capnocytophaga granulosa 2.6.2.1.3.2.5838 OTU 3 seqs prokMSA_id:2443 U62914.1 Gelidibacter algens str. ACAM 536T C8ST5 prokMSA_id:2444 U62916.1 Gelidibacter algens str. ACAM 551 A296 prokMSA_id:17502 U62915.1 Gelidibacter algens str. ACAM 550 A374 2.6.2.1.3.2.5841 OTU 1 seq prokMSA_id:70616 AY005076.1 subgingival dental plaque clone BB167 2.6.2.1.3.2.5843 OTU 30 seqs prokMSA_id:2261 U60101.1 Riemerella anatipestifer str. ATCC 11845T prokMSA_id:22221 AF118416.1 Riemerella anatipestifer str. 4005 prokMSA_id:24404 AF118418.1 Riemerella anatipestifer str. 4280 prokMSA_id:47818 U60104.1 Riemerella anatipestifer str. 30/90 prokMSA_id:75752 AJ519403.1 uranium mining waste pile clone JG37-AG-16 sp. prokMSA_id:82260 BD175053.1 Slime control method in paper making step of neutral paper making. prokMSA_id:87140 AY278614.1 Flavobacteriaceae genomosp. C1 prokMSA_id:99413 AY672523.1 hydrothermal vent 9 degrees North East Rise Pacific Ocean clone CH4_1_BAC_16SrRNA_9N_EPR prokMSA_id:102561 AY612167.1 Riemerella anatipestifer str. PT0001-G prokMSA_id:102668 AY612180.1 Riemerella anatipestifer str. TRa2 prokMSA_id:107256 AY612175.1 Riemerella anatipestifer str. PT9404-D prokMSA_id:107400 AY612176.1 Riemerella anatipestifer str. PT9901-G prokMSA_id:107645 AY612190.1 Riemerella anatipestifer str. YL9001-D2 prokMSA_id:107796 AY612191.1 Riemerella anatipestifer str. YL9101-D1 prokMSA_id:110385 AY856449.1 Riemerella anatipestifer str. 114/02 prokMSA_id:110729 AY856447.1 Riemerella anatipestifer str. 112/02 prokMSA_id:110736 AY856448.1 Riemerella anatipestifer str. 113/02 prokMSA_id:111092 AY856450.1 Riemerella anatipestifer str. 115/02 prokMSA_id:111531 AY871828.1 Riemerella anatipestifer str. 8755 prokMSA_id:111765 AY871825.1 Riemerella anatipestifer str. H-1785 prokMSA_id:111861 AY871818.1 Riemerella anatipestifer str. D-24046 prokMSA_id:111914 AY871832.1 Riemerella anatipestifer str. S-4801 prokMSA_id:112028 AY871827.1 Riemerella anatipestifer str. D-28020 prokMSA_id:112071 AY871835.1 Riemerella anatipestifer str. 30/90 prokMSA_id:112182 AY871826.1 Riemerella anatipestifer str. H-2199 prokMSA_id:112896 AY920405.1 Riemerella anatipestifer str. RA-T1-117 prokMSA_id:113198 AY920406.1 Rosa chinensis str. RA-T1-118 prokMSA_id:114323 AY920411.1 Riemerella anatipestifer str. RA-T2-123 prokMSA_id:114330 AY920410.1 Riemerella anatipestifer str. RA-T2-122 prokMSA_id:114359 AY920409.1 Riemerella anatipestifer str. RA-T2-121 2.6.2.1.3.2.5847 OTU 1 seq prokMSA_id:72366 AY038756.1 epilithon clone TAF-B87 2.6.2.1.3.2.5859 OTU 1 seq prokMSA_id:22547 AF211292.1 hypersaline black mud clone CE55 2.6.2.1.3.2.5862 OTU 3 seqs prokMSA_id:2265 X67850.1 Flavobacterium paraogurii str. GIFU 1396T prokMSA_id:2274 X67848.1 Chryseobacterium indologenes str. ATCC 2989T prokMSA_id:2276 X67852.1 Chryseobacterium gleum str. NCTC 11432T 2.6.2.1.3.2.5867 OTU 1 seq prokMSA_id:48020 AF424356.1 CFB group clone MERTZ_0CM_293 2.6.2.1.3.2.5873 OTU 1 seq prokMSA_id:45481 AB032505.1 Tenacibaculum amylolyticum str. MBIC4355 2.6.2.1.3.2.5894 OTU 3 seqs prokMSA_id:36779 AF343928.1 Cytophaga sp. NBF7 prokMSA_id:42720 AF343933.1 Cytophaga sp. NBF12 prokMSA_id:69032 AF343935.1 marine NBF14 2.6.2.1.3.2.5896 OTU 2 seqs prokMSA_id:60625 AF406550.1 bacterioplankton clone AEGEAN_129 prokMSA_id:60635 AF406539.1 bacterioplankton clone AEGEAN_136 2.6.2.1.3.2.5901 OTU 5 seqs prokMSA_id:79763 AF468412.1 Arctic sea ice ARK10104 prokMSA_id:80437 AF468425.1 Arctic sea ice ARK10164 prokMSA_id:80488 AF468424.1 Arctic sea ice ARK10161 prokMSA_id:80779 AF468431.1 Arctic sea ice ARK10270 prokMSA_id:80970 AF468423.1 Arctic sea ice ARK10159 2.6.2.1.3.2.5903 OTU 1 seq prokMSA_id:68987 AY033305.1 marine bacterioplankton clone MB11E04 2.6.2.1.3.2.5904 OTU 4 seqs prokMSA_id:79692 AF468429.1 Arctic sea ice ARK10255 prokMSA_id:80980 AF468410.1 Arctic sea ice ARK10063 prokMSA_id:81123 AY167318.1 Psychroflexus torquis str. ANT9232b prokMSA_id:81527 AY167320.1 Psychroflexus torquis str. ANT9268 2.6.2.1.3.2.5906 OTU 2 seqs prokMSA_id:2373 X67609.1 Capnocytophaga sputigena prokMSA_id:2374 AF133536.1 Capnocytophaga sputigena str. CIP 100 897 2.6.2.1.3.2.5914 OTU 25 seqs prokMSA_id:21203 AJ344134.1 Gelidibacter mesophilus str. 2SM28 CECT 5104 prokMSA_id:25577 AJ344133.1 Gelidibacter mesophilus str. 2SM29T CECT 5103T prokMSA_id:61113 AF530147.1 Cf. Cytophaga sp. isolate str. MGP-67 prokMSA_id:79768 AY187688.1 marine environment isolate str. KMM 3901 prokMSA_id:79974 AF468277.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKIA-137 prokMSA_id:80530 AF468430.1 Arctic sea ice ARK10267 prokMSA_id:81005 AF468427.1 Arctic sea ice ARK10217 prokMSA_id:81008 AF468421.1 Arctic sea ice ARK10144 prokMSA_id:81033 AY167341.1 Psychroserpens sp. str. ARK10236 prokMSA_id:81654 AY218549.1 penguin droppings sediments clone KD1-108 prokMSA_id:82874 AF539760.1 marine isolate str. E42 prokMSA_id:83782 AY228461.1 Formosa algae str. KMM 3553 prokMSA_id:93315 AY259506.1 Gelidibacter sp. 'BSD 18' str. BSD S1 18 prokMSA_id:99602 AY521223.1 Winogradskyella thalassicola str. KMM 3907 prokMSA_id:102038 AY694001.1 Lacinutrix copepodicola str. DJ3 prokMSA_id:102333 AY694003.1 Calefactosor algoritergicola str. APA-1 prokMSA_id:102497 AY694004.1 Calefactosor gelidisalsuginis str. IC164 prokMSA_id:104230 AY651070.1 Bizionia paragoriae str. KMM 6029 prokMSA_id:106436 AY576655.1 Gillisia mitskevichiae str. KMM 6034 prokMSA_id:108084 AJ786810.1 nitrifying inoculum isolate R-22858 prokMSA_id:108359 AY781191.1 Psychroserpens sp. str. A622 prokMSA_id:108689 AY771714.1 Psychroserpens burtonensis str. S2-64 prokMSA_id:113281 AY922247.1 whale bone muddy seafloor off West Antarctic Peninsula Shelf (S65.10 W64.47) depth 560 meters clone 131848 prokMSA_id:113758 AY922250.1 whale bone muddy seafloor off West Antarctic Peninsula Shelf (S65.10 W64.47) depth 560 meters clone 131854 prokMSA_id:114234 AY922252.1 whale bone muddy seafloor off West Antarctic Peninsula Shelf (S65.10 W64.47) depth 560 meters clone 131857 2.6.2.1.3.2.5915 OTU 1 seq prokMSA_id:76123 AJ534682.1 ground water deep-well injection disposal site radioactive wastes Tomsk-7 clone S15A-MN27 bacterium 2.6.2.1.3.2.5918 OTU 2 seqs prokMSA_id:28957 AJ318191.1 Waste-gas biofilter clone BIui38 prokMSA_id:110915 AJ853512.1 landfill leachate clone GZKB17 2.6.2.1.3.2.5919 OTU 3 seqs prokMSA_id:22873 AF469612.1 Tenacibaculum skagerrakense str. D30 prokMSA_id:59171 AY136126.1 Gulf Eilat Red Sea isolate str. RED34 prokMSA_id:102825 AB073588.2 Cytophaga sp. I-377 2.6.2.1.3.2.5922 OTU 1 seq prokMSA_id:25172 AF424343.1 CFB group clone MERTZ_2CM_289 2.6.2.1.3.2.5931 OTU 14 seqs prokMSA_id:2310 AB010951.1 Flavobacterium columnare str. IAM 14301 (NCMB2248T) prokMSA_id:2311 AB010952.1 Flavobacterium columnare str. FK 401 prokMSA_id:2317 AB023660.1 Flavobacterium columnare str. ATCC 49513 (JIP 49/87) prokMSA_id:31594 AJ319020.1 Flavobacterium sp. str. IsoD1 infected salmonid fish tissue suffering flavobacterial diseases prokMSA_id:58640 AB078047.1 Flavobacterium columnare str. IFO 15943 prokMSA_id:77434 AY095342.1 Flavobacterium columnare prokMSA_id:101948 AJ831830.1 Flavobacterium columnare str. Htan5/03 prokMSA_id:106382 AJ831824.1 Flavobacterium columnare str. 3294/95 prokMSA_id:106544 AJ831825.1 Flavobacterium columnare str. 8128/97 prokMSA_id:106699 AJ831826.1 Flavobacterium columnare str. 8239/97 prokMSA_id:106854 AJ831827.1 Flavobacterium columnare str. 1397/00 prokMSA_id:107006 AJ831828.1 Flavobacterium columnare str. KE/02 prokMSA_id:107164 AJ831829.1 Flavobacterium columnare str. OS/03 prokMSA_id:107628 AY635167.1 Flavobacterium columnare str. ATCC 49512 2.6.2.1.3.2.5933 OTU 1 seq prokMSA_id:2325 AB015481.1 Flavobacterium columnare str. PH-97028 (IAM 14821) 2.6.2.1.3.2.5934 OTU 2 seqs prokMSA_id:45877 AB035150.2 Haloanella gallinarum str. PS3 prokMSA_id:86598 AY244776.1 Haloanella gallinarum str. 2002-2301269 2.6.2.1.3.2.5935 OTU 1 seq prokMSA_id:2326 AF087089.1 clone BS5 2.6.2.1.3.2.5942 OTU 1 seq prokMSA_id:67323 AF493679.1 Flavobacteriaceae str. SW072 2.6.2.1.3.2.5953 OTU 1 seq prokMSA_id:80559 AF468243.1 Arctic pack ice; northern Fram Strait; 80 31.1 N; 01 deg 59.7 min E clone ARKDMS-33 2.6.2.1.3.2.5954 OTU 21 seqs prokMSA_id:2296 AF145849.1 Metal-contaminated soil clone K20-54 prokMSA_id:2297 AF142841.1 clone BURTON-22 prokMSA_id:2298 AF162266.2 Flavobacterium frigidarium str. A2i; ATCC 700810; NCIMB 13737 prokMSA_id:2327 AF030380.1 Flavobacterium xanthum str. ACAM 81(T) prokMSA_id:18728 AF366583.1 Acanthamoeba sp. str. K69i prokMSA_id:22760 AF277542.1 polar sea ice clone SIC.ARCTIC.156 prokMSA_id:27830 AF366582.1 Acanthamoeba sp. str. KHLA1 prokMSA_id:28033 AF235124.1 Cytophaga sp. str. KT0234A prokMSA_id:30501 AF289167.1 freshwater clone PRD01b007B prokMSA_id:38264 AF150713.1 Elbe River snow isolate Iso8 Iso8_1304 prokMSA_id:58643 AB078043.1 Flavobacterium johnsoniae str. IFO 15970 prokMSA_id:67491 AF493695.1 Flavobacterium sp. SW254 prokMSA_id:69855 AF493638.1 Flavobacterium sp. str. EP209 prokMSA_id:69915 AF493658.1 Flavobacterium sp. str. EP217 prokMSA_id:70674 AF493642.1 Flavobacterium sp. str. EP236 prokMSA_id:71925 AF493635.1 Flavobacterium sp. str. EP030 prokMSA_id:77602 AB074609.1 synonym: CFB group clone APe4_4 prokMSA_id:83993 AF321038.2 Flavobacterium sp. str. GOBB3-209 prokMSA_id:85358 AJ441000.1 lake microbial mat isolate str. R-9003 prokMSA_id:91330 AY345505.1 Lake Waiau sediment clone W4A-G04 prokMSA_id:99774 AY212736.1 water 5 m downstream manure clone 41ds5 2.6.2.1.3.2.5955 OTU 1 seq prokMSA_id:61970 AJ244701.1 Flavobacterium sp. str. V4.MS.29 = MM_2747 V4.MS.29 2.6.2.1.3.2.5956 OTU 5 seqs prokMSA_id:58646 AB078039.1 Flexibacter aggregans str. IFO 15975 prokMSA_id:70583 AF235114.1 Cytophaga sp. str. KT02ds22 prokMSA_id:78926 AB094462.1 Flexibacter sp. str. 2216.15.5 prokMSA_id:81311 AB080771.1 Arenibacter troitsensis str. KMM3674 prokMSA_id:96209 AY394872.1 Cytophaga sp. str. EPR 14 2.6.2.1.3.2.5958 OTU 1 seq prokMSA_id:61974 AJ244698.1 Flavobacterium sp. str. V4.BS.09 = MM_2428 V4.BS.09 2.6.2.1.3.2.5960 OTU 1 seq prokMSA_id:45309 AF359541.1 Alexandrium tamarense PCC 173a 2.6.2.1.3.2.5967 OTU 1 seq prokMSA_id:25633 AF417891.1 antarctic soil clone bh2.57 2.6.2.1.3.2.5968 OTU 2 seqs prokMSA_id:19188 AF087048.1 clone BA12 prokMSA_id:31709 AF087045.1 clone BA6 2.6.2.1.3.2.5969 OTU 12 seqs prokMSA_id:2363 U41350.1 Capnocytophaga ochracea prokMSA_id:2364 U41354.1 Capnocytophaga ochracea prokMSA_id:2369 U41353.1 Capnocytophaga ochracea prokMSA_id:2394 U41351.1 Capnocytophaga ochracea prokMSA_id:26200 AY005078.1 subgingival dental plaque clone X066 prokMSA_id:29194 AY005080.1 subgingival dental plaque clone X089 prokMSA_id:39124 AY005079.1 subgingival dental plaque clone AA032 prokMSA_id:56144 AF543298.1 Capnocytophaga ochracea str. ChDC OS48 prokMSA_id:58284 AF543292.1 Capnocytophaga ochracea str. ChDC OS42 prokMSA_id:59534 AF538853.1 Capnocytophaga sp. oral strain str. P4G_35 P4 oral prokMSA_id:87442 AY278613.1 Capnocytophaga genomosp. C1 prokMSA_id:102901 AY429469.1 Capnocytophaga sp. P2 oral strain str. P4P_12 2.6.2.1.3.2.5971 OTU 43 seqs prokMSA_id:2402 M62799.1 Cytophaga uliginosa prokMSA_id:46683 AF235126.1 Cytophaga sp. str. KT02ds18 prokMSA_id:61123 AF530137.1 Zobellia sp. str. MGP-14 prokMSA_id:67321 AF493682.1 Flavobacteriaceae str. SW268 prokMSA_id:80846 AF468420.2 Arctic sea ice ARK10141 prokMSA_id:83542 AF539757.1 Cellulophaga sp. str. E6 prokMSA_id:83581 AF539758.1 Cellulophaga sp. str. RE2-13 prokMSA_id:83608 AY271626.1 Maribacter ulvicola str. KMM 3951 prokMSA_id:84346 AY241561.1 aggregates water column German Wadden Sea part North Sea isolate str. HP25 HP25 prokMSA_id:85064 AY271625.1 Maribacter aquivivus str. KMM 3949 prokMSA_id:85665 AY271624.1 Maribacter orientalis str. KMM 3947 prokMSA_id:86570 AY271623.1 Maribacter sedimenticola str. KMM 3903 prokMSA_id:89246 AY317149.1 Cytophaga sp. str. GE04 prokMSA_id:99698 AY445073.1 Muricauda flavescens str. SW-62 prokMSA_id:99862 AY445074.1 Muricauda flavescens str. SW-74 prokMSA_id:100346 AB073560.2 Cytophaga sp. I-2031 prokMSA_id:100411 AY654763.1 Oculina mucus isolate 106 prokMSA_id:100504 AB073561.2 Cytophaga sp. I-2034 prokMSA_id:100568 AY654764.1 Oculina mucus isolate 28 prokMSA_id:100810 AB073563.2 Cytophaga sp. str. MBIC04662 prokMSA_id:101133 AB073565.2 Cytophaga sp. I-762 prokMSA_id:101744 AB073581.2 Cytophaga sp. str. MBIC04670 prokMSA_id:102056 AB073583.2 Cytophaga sp. str. MBIC04666 prokMSA_id:102210 AB073584.2 Cytophaga sp. T-424 prokMSA_id:102352 AB073585.2 Cytophaga sp. T-565 prokMSA_id:102584 AB121974.1 Zobellia amurskyensis str. KMM 3526 prokMSA_id:102751 AB121975.1 Zobellia laminariae str. KMM 3676 prokMSA_id:102893 AB121976.1 Zobellia russellii str. KMM 3677 prokMSA_id:104707 AY654840.1 Oculina mucus isolate 85 prokMSA_id:104862 AB073554.2 Cytophaga sp. str. MBIC04671 prokMSA_id:105001 AB073555.2 Cytophaga sp. str. MBIC04672 prokMSA_id:105152 AB073556.2 Cytophaga sp. str. MBIC04673 prokMSA_id:105219 AY654759.1 Oculina mucus isolate 110 prokMSA_id:105314 AB073557.2 Cytophaga sp. str. MBIC04674 prokMSA_id:105471 AB073558.2 Cytophaga sp. str. MBIC04683 prokMSA_id:105618 AB073559.2 Cytophaga sp. str. MBIC04663 prokMSA_id:106018 AB073574.2 Cytophaga sp. str. MBIC04682 prokMSA_id:106162 AB073575.2 Cytophaga sp. str. MBIC04687 prokMSA_id:106331 AB073576.2 Cytophaga sp. str. MBIC04669 prokMSA_id:106493 AB073577.2 Cytophaga sp. str. MBIC04661 prokMSA_id:106649 AB073578.2 Cytophaga sp. str. MBIC04664 prokMSA_id:106804 AB073579.2 Cytophaga sp. str. MBIC04667 prokMSA_id:109219 AB180387.1 Cytophaga sp. str. No. 56 2.6.2.1.3.2.5977 OTU 1 seq prokMSA_id:20776 AJ318193.1 Waste-gas biofilter clone BIvi22 2.6.2.1.3.2.5981 OTU 1 seq prokMSA_id:29202 AF142953.1 clone TAYNAYA-7 2.6.2.1.3.2.5991 OTU 27 seqs prokMSA_id:20824 AB032507.1 Tenacibaculum ovolyticum str. IFO15992 prokMSA_id:24142 AB032508.1 Tenacibaculum ovolyticum str. IFO15993 prokMSA_id:31362 AF425756.1 Tenacibaculum sp. clone MERTZ_0CM_42 prokMSA_id:37069 AB032506.1 Tenacibaculum ovolyticum str. IAM14318 prokMSA_id:47567 AF333086.1 clone SIC.9-10 prokMSA_id:51108 AF277564.1 polar sea ice clone SIC.B9029 prokMSA_id:58631 AB078058.1 Tenacibaculum ovolyticum str. IFO 15947 prokMSA_id:66033 AB073587.2 Cytophaga sp. str. MBIC04665 prokMSA_id:66034 AB073586.2 Cytophaga sp. T-551 prokMSA_id:67328 AF493677.1 Tenacibaculum sp. str. SW258 prokMSA_id:70094 AF493675.1 Polaribacter sp. str. SW019 prokMSA_id:70449 AF493678.1 Tenacibaculum sp. str. SW274 prokMSA_id:73960 AF530150.1 Tenacibaculum sp. str. MGP-74/AN6 prokMSA_id:82951 AY274865.1 Delaware River estuary clone CF18 prokMSA_id:85098 AY274847.1 Delaware River estuary clone CF10 prokMSA_id:87187 AY285942.1 Flavobacteriaceae G1A2 prokMSA_id:87529 AY285945.1 Flavobacteriaceae G912S3B prokMSA_id:87711 AY285946.1 Flavobacteriaceae G912S4 prokMSA_id:92204 AY353820.1 Flavobacteriaceae G121102s2_3 prokMSA_id:92286 AY353814.1 Flavobacteriaceae G1112S4A prokMSA_id:92882 AY353819.1 Flavobacteriaceae G121102s2_2 prokMSA_id:92966 AY353815.1 Flavobacteriaceae G1112S4B prokMSA_id:93100 AY353817.1 Flavobacteriaceae G11A3 prokMSA_id:113130 AY922242.1 whale bone muddy seafloor off West Antarctic Peninsula Shelf (S65.10 W64.47) depth 560 meters clone 131819 prokMSA_id:113251 AY922235.1 whale bone muddy seafloor off West Antarctic Peninsula Shelf (S65.10 W64.47) depth 560 meters clone 131768 prokMSA_id:113326 AY922211.1 orange microbial mat on grey whale carcass Pacific Ocean Santa Cruz Basin (N33.30 W119.22) depth 1674 meters clone 131677 prokMSA_id:113813 AY922239.1 whale bone muddy seafloor off West Antarctic Peninsula Shelf (S65.10 W64.47) depth 560 meters clone 131792 2.6.2.1.3.2.5997 OTU 62 seqs prokMSA_id:2295 U85888.1 Flavobacterium sp. str. A265 prokMSA_id:2309 M62797.1 Flavobacterium aquatile prokMSA_id:2320 U85887.1 Flavobacterium sp. str. A103 prokMSA_id:2322 U85890.1 Flavobacterium sp. str. ACAM123 prokMSA_id:2330 M62792.1 Flexibacter aurantiacus prokMSA_id:2334 M59051.2 Flavobacterium johnsoniae prokMSA_id:2335 M58767.2 Flavobacterium flevense prokMSA_id:2401 AJ005973.1 Cellulophaga fucicola str. NN015860 () prokMSA_id:23812 AB032510.1 Cellulophaga lytica str. IFO15986 prokMSA_id:25886 AB032511.1 Cellulophaga lytica str. IFO16020 prokMSA_id:28162 AB032512.1 Cellulophaga lytica str. IFO16021 prokMSA_id:29722 AB032509.1 Cellulophaga lytica str. MBIC1544 prokMSA_id:31829 AY035870.1 Cellulophaga lytica str. ACEM21 prokMSA_id:34517 AB032513.1 Cellulophaga lytica str. IFO16022 prokMSA_id:52052 AF321014.2 Flavobacterium sp. str. GOBB3-317_2 prokMSA_id:58543 AJ440996.1 Flavobacterium gelidilacus str. LMG 21477 prokMSA_id:58544 AJ507151.1 Flavobacterium gelidilacus str. LMG 21619 prokMSA_id:58629 AB078060.1 Flavobacterium psychrophilum prokMSA_id:69711 AF529117.1 trichloroethene-contaminated site clone FTLM155 bacterium prokMSA_id:71270 AY145539.1 dilution (10e-7) freshwater section Weser estuary isolate str. CF-1 prokMSA_id:71465 AF493655.1 Flavobacterium sp. str. EP125 prokMSA_id:72663 AJ244699.1 Flavobacterium sp. str. V12.MO.200.17 prokMSA_id:73721 AF493637.1 Flavobacterium sp. str. EP130 prokMSA_id:73825 AY124339.1 CS910 prokMSA_id:82751 AJ440998.1 lake microbial mat isolate str. R-8963 prokMSA_id:84320 AJ440984.1 lake microbial mat isolate str. R-7666 prokMSA_id:84602 AJ440981.1 lake microbial mat isolate str. R-7579 prokMSA_id:85662 AF534436.1 Toolik Lake main station at 3 m depth clone TLM12 bacterium prokMSA_id:88618 AY315159.1 Glacier isolate str. FJS32 prokMSA_id:93990 AY259512.1 Gelidibacter sp. 'BSD 05' str. BSD S2 05 prokMSA_id:98800 AJ585429.1 Flavobacterium fryxellicola str. LMG 22022 prokMSA_id:99937 AY212665.1 water 20 m downstream manure clone 218ds20 prokMSA_id:99972 AB121102.1 cold seep sediment clone JS624-14 prokMSA_id:100337 AB154307.1 freshwater clone S9F-18 prokMSA_id:100666 AY581113.1 Flavobacterium antarcticum str. AT1026 prokMSA_id:100670 AY212682.1 water 5 m downstream manure clone 235ds5 prokMSA_id:100821 AY581114.1 Flavobacterium sp. AT1042 str. AT1042; IMSNU 14048; KCTC 12223 prokMSA_id:100900 AY212611.1 water 20 m upstream manure clone 15up prokMSA_id:100983 AY581115.1 Flavobacterium sp. AT1048 str. AT1048; IMSNU 14050; KCTC 12224 prokMSA_id:101227 AY752127.1 lake water clone S10.16 prokMSA_id:101883 AY694000.1 Subsaxibacter broadyi str. O6-2 prokMSA_id:102034 AY212618.1 water 20 m downstream manure clone 167ds20 prokMSA_id:103036 AY212709.1 water 5 m downstream manure clone 25ds5 prokMSA_id:103127 AB188214.1 Cytophaga sp. str. TUT1213 prokMSA_id:103379 AJ697702.1 mesotrophic lake clone SF62 prokMSA_id:103518 AJ697703.1 mesotrophic lake clone SF63 prokMSA_id:103586 AY622255.1 subsurface soil clone B-AQ60 prokMSA_id:104311 AY654753.1 Oculina mucus isolate 117 prokMSA_id:105158 AY693999.1 Subsaxibacter broadyi str. P7 prokMSA_id:108061 AJ786784.1 Flavobacterium sp. R-20816 prokMSA_id:108065 AJ786788.1 Flavobacterium sp. R-20822 prokMSA_id:108336 AY584585.1 Flavobacterium sp. HTCC554 prokMSA_id:109136 AY794193.1 soil clone F4C20 prokMSA_id:109222 AB180390.1 Cellulophaga sp. str. No. 62 prokMSA_id:109714 AY662493.1 Flavobacterium psychrophilum str. ATCC 49418 prokMSA_id:109940 AY662494.1 Flavobacterium psychrophilum str. CSF 259-93 prokMSA_id:111856 AF368756.1 Flavobacterium sp. str. 3A5 prokMSA_id:112078 AY883938.1 Gaetbulibacter saemankumensis str. SMK-36 prokMSA_id:112241 AY883937.1 Gaetbulibacter saemankumensis str. SMK-12 prokMSA_id:112379 AY883939.1 Gaetbulibacter saemankumensis str. SMK-45 prokMSA_id:112714 AB189355.1 cold seep sediment clone JT75-101 prokMSA_id:114404 AY922021.1 farm soil adjacent to silage storage bunker clone AKYG467 2.6.2.1.3.2.6000 OTU 1 seq prokMSA_id:2403 U85886.1 marine psychrophile str. ACAM210 2.6.2.1.3.2.6001 OTU 1 seq prokMSA_id:2404 AF001366.1 Cellulophaga algicola str. IC166 2.6.2.1.3.2.6002 OTU 1 seq prokMSA_id:2405 AF142840.1 clone BURTON-20 2.6.2.1.3.2.6004 OTU 1 seq prokMSA_id:2406 AF170735.1 Cytophaga-like isolate str. QSSC1-18 2.6.2.1.3.2.6014 OTU 1 seq prokMSA_id:48592 AF277520.1 polar sea ice clone SIC.946 2.6.2.1.3.2.6017 OTU 1 seq prokMSA_id:72799 AJ319024.1 Flavobacterium sp. str. IsoE1 infected salmonid fish tissue suffering flavobacterial diseases 2.6.2.1.3.2.6021 OTU 1 seq prokMSA_id:2353 AF142856.1 clone BURTON-38 2.6.2.1.3.2.6023 OTU 1 seq prokMSA_id:35551 AF300973.1 South Atlantic Bight; approximately 200 miles offshore 80 m water on NO3 as sole nitrogen source isolate str. A16s 2.6.2.1.3.2.6024 OTU 1 seq prokMSA_id:2354 AF142831.1 clone BURTON-11 2.6.2.1.3.2.6027 OTU 1 seq prokMSA_id:51596 AF087083.1 clone BAx1 2.6.2.1.3.2.6028 OTU 1 seq prokMSA_id:2411 M92279.1 Flavobacterium salegens 2.6.2.1.3.2.6035 OTU 7 seqs prokMSA_id:2247 U87100.1 Ornithobacterium rhinotracheale str. D95-36425 prokMSA_id:2248 U87101.1 Ornithobacterium rhinotracheale str. LMG 9086T prokMSA_id:2249 U87102.1 Ornithobacterium rhinotracheale str. LMG 11553 prokMSA_id:2250 U87103.1 Ornithobacterium rhinotracheale str. LMG 15870 prokMSA_id:2251 U87104.1 Ornithobacterium rhinotracheale str. LMG 11554 prokMSA_id:2252 U87105.1 Ornithobacterium rhinotracheale str. LMG 14578 prokMSA_id:2253 U87106.1 Ornithobacterium rhinotracheale str. LMG 11551 2.6.2.1.3.2.6040 OTU 2 seqs prokMSA_id:2413 AF001373.1 marine psychrophile str. IC148 prokMSA_id:102953 AY694007.1 Gillisia sandarakina str. IC148 2.6.2.1.3.2.6042 OTU 3 seqs prokMSA_id:24397 AJ320489.2 winter Bugach pond clone prokMSA_id:73968 AF530973.1 Bacteroidetes DGGE gel band so23 prokMSA_id:84227 AJ440977.1 lake microbial mat isolate str. R-7515 2.6.2.1.3.2.6043 OTU 1 seq prokMSA_id:73803 AY008312.1 Capnocytophaga sp. oral clone EL043 2.6.2.1.3.2.6044 OTU 1 seq prokMSA_id:85666 AY274841.1 Delaware River estuary clone 2D9 2.6.2.1.3.2.6052 OTU 1 seq prokMSA_id:2450 L10948.1 marine snow clone AGG13 2.6.2.1.3.2.6058 OTU 1 seq prokMSA_id:2362 L10947.1 marine snow clone AGG50 2.6.2.1.3.2.6067 OTU 10 seqs prokMSA_id:17681 AF328176.1 clone KS27 prokMSA_id:26719 AF277556.1 polar sea ice clone SIC.B8012 prokMSA_id:30111 AF328177.1 clone KS28 prokMSA_id:31861 AF328221.1 clone KS88 prokMSA_id:33373 AF328164.1 clone KS10 prokMSA_id:39816 AF328168.1 clone KS15 prokMSA_id:46252 AF195444.1 brown tide algal CCMP1784 isolate str. kbc13 prokMSA_id:51877 AF328169.1 clone KS16 prokMSA_id:75119 AY163576.1 Croceibacter atlanticus str. HTCC2559T; KCTC 12090T; ATCC BAA-628T prokMSA_id:83353 AJ557873.1 seawater 2.6.2.1.3.2.6075 OTU 2 seqs prokMSA_id:2365 X97245.1 Capnocytophaga cynodegmi str. ATCC 49044 prokMSA_id:2384 L14638.1 Capnocytophaga cynodegmi 2.6.2.1.3.2.6077 OTU 1 seq prokMSA_id:52923 AF388897.1 Flavobacterium sp. clone GOBB3-CL141 2.6.2.1.3.2.6079 OTU 1 seq prokMSA_id:78016 AB074611.1 synonym: CFB group clone APe4_42 2.6.2.1.3.2.6083 OTU 1 seq prokMSA_id:59360 AF502205.1 EBPR sludge lab scale clone HP1A39 2.6.2.1.3.2.6089 OTU 1 seq prokMSA_id:65530 AY095433.1 yard-trimming-compost clone S-72 2.6.2.1.3.2.6090 OTU 1 seq prokMSA_id:77694 AB074613.1 synonym: CFB group clone APe2_9 2.6.2.1.3.2.6093 OTU 1 seq prokMSA_id:17872 AJ400340.1 f cytometric sorted marine sample subpopulation 1 clone ZD0203 bacterium 2.6.2.1.3.2.6094 OTU 4 seqs prokMSA_id:48241 AF367855.1 USA: California isolate str. KHN36A prokMSA_id:53529 AF465364.1 Tenacibaculum sp. str. UST991130-047 prokMSA_id:58642 AB078044.1 Flexibacter aurantiacus subsp. copepodarum str. IFO 15978 subsp. prokMSA_id:59173 AY136123.1 Tenacibaculum sp. str. RED13 2.6.2.1.3.2.6098 OTU 2 seqs prokMSA_id:2370 X67610.1 Capnocytophaga ochracea str. ATCC 33596 prokMSA_id:2381 L14635.1 Capnocytophaga ochracea 2.6.2.1.3.2.6100 OTU 1 seq prokMSA_id:71527 AJ309324.1 Chryseobacterium defluvii B2 2.6.2.1.3.2.6103 OTU 1 seq prokMSA_id:17931 AF321015.1 CFB group isolate str. GOBB3-210 2.6.2.1.3.2.6104 OTU 3 seqs prokMSA_id:85631 AY274850.1 Delaware River estuary clone CF20 prokMSA_id:86070 AY274861.1 Delaware River estuary clone CF91 prokMSA_id:86177 AY274860.1 Delaware River estuary clone CF6 2.6.2.1.3.2.6112 OTU 1 seq prokMSA_id:39169 AF236015.1 CFB group isolate str. A1002 2.6.2.1.3.2.6113 OTU 3 seqs prokMSA_id:28744 AJ319021.1 Flavobacterium sp. str. IsoD2 infected salmonid fish tissue suffering flavobacterial diseases prokMSA_id:32751 AJ319019.1 Flavobacterium sp. str. IsoC2 infected salmonid fish tissue suffering flavobacterial diseases prokMSA_id:59118 AJ440504.1 Flavobacterium sp. BH11.5 2.6.2.1.3.2.6126 OTU 1 seq prokMSA_id:32560 AF217562.1 Chryseobacterium sp. str. FR2 2.6.2.1.3.2.6129 OTU 2 seqs prokMSA_id:39004 AF052742.1 Arenibacter latericius str. KMM 426; LMG 19694; CIP 106861 prokMSA_id:84611 AY271622.1 Arenibacter certesii str. KMM 3941 2.6.2.1.3.2.6140 OTU 1 seq prokMSA_id:28646 AF424354.1 CFB group clone MERTZ_0CM_248 2.6.2.1.3.2.6142 OTU 3 seqs prokMSA_id:26293 AF419681.1 hydrothermal vent sediment clone CS_B009 prokMSA_id:77994 AJ535223.1 marine sediment above hydrate ridge clone Hyd24-17 bacterium prokMSA_id:78061 AJ535217.1 marine sediment above hydrate ridge clone Hyd24-39 bacterium 2.6.2.1.3.2.6145 OTU 2 seqs prokMSA_id:22450 AF087062.1 clone MK12 prokMSA_id:65573 AY095388.1 yard-trimming-compost clone S-16 2.6.2.1.3.2.6149 OTU 1 seq prokMSA_id:50504 AF366000.1 USA: off La Jolla CA isolate str. S3 2.6.2.1.3.2.6151 OTU 1 seq prokMSA_id:26072 AF125327.1 Cytophaga sp. B12 2.6.2.1.3.2.6157 OTU 1 seq prokMSA_id:59536 AF538774.1 municipal wastewater treatment bioreactor clone LB-Q bacterium 2.6.2.1.3.2.6161 OTU 3 seqs prokMSA_id:34151 AF143825.1 hydrocarbon-degrading consortium clone 4-Org1-38 prokMSA_id:79592 AB071382.1 Vitellibacter vladivostokensis str. KMM3516 prokMSA_id:93854 AY259510.1 Aequorivita sp. 'BSD 02' str. BSD S2 02 2.6.2.1.3.2.6163 OTU 1 seq prokMSA_id:72573 AY038753.1 epilithon clone TAF-A188 2.6.2.1.3.2.6164 OTU 1 seq prokMSA_id:18143 AB057592.1 Flavobacteriaceae str. SA-0082 2.6.2.1.3.2.6186 OTU 1 seq prokMSA_id:39294 AF361197.1 mesoeutrophic reservoir clone 15 2.6.2.1.3.2.6195 OTU 1 seq prokMSA_id:72435 AF385544.1 purified crevicular epithelial cells clone AY017 oral 2.6.2.1.3.2.6197 OTU 1 seq prokMSA_id:39414 AF087072.1 clone MK18 2.6.2.1.3.2.6200 OTU 1 seq prokMSA_id:40807 AF321043.1 Flavobacterium sp. str. GOBB3-C108 2.6.2.1.3.2.6203 OTU 2 seqs prokMSA_id:68616 AY081986.1 atrazine-catabolizing microbial presence methanol clone KRA30+19 prokMSA_id:68626 AY081974.1 atrazine-catabolizing microbial presence methanol clone KRA30+03 2.6.2.1.3.2.6206 OTU 2 seqs prokMSA_id:33592 AF217563.1 Flexibacter sp. str. FR1 prokMSA_id:41509 AF220307.1 temperature petroleum reservoir clone O11D1 2.6.2.1.3.2.6208 OTU 1 seq prokMSA_id:67313 AF493690.1 Flavobacteriaceae str. SW325 2.6.2.1.3.2.6211 OTU 1 seq prokMSA_id:34364 AF469385.1 clone CTD5B 2.6.2.1.3.2.6215 OTU 1 seq prokMSA_id:46641 AF344179.1 Flavobacterium sp. str. cpw707 2.6.2.1.3.2.6220 OTU 1 seq prokMSA_id:19183 AF417880.1 antarctic soil clone bh1.62 2.6.2.1.3.2.6221 OTU 1 seq prokMSA_id:34569 AF354619.1 marine clone Arctic96AD-4 2.6.2.1.3.2.6229 OTU 1 seq prokMSA_id:39685 AB039966.1 Marine gliding isolate str. UWA-1 2.6.2.1.3.2.6241 OTU 2 seqs prokMSA_id:70870 AF254114.1 thiosulfate-oxidizing Cytophaga/Flavobacterium north atlantic abyssal sediments at 4500 m depth isolate str. AIII4 prokMSA_id:71563 AF254113.1 thiosulfate-oxidizing Cytophaga/Flavobacterium north atlantic abyssal sediments at 4500 m depth isolate str. AII3 AII3 2.6.2.1.3.2.6242 OTU 1 seq prokMSA_id:46707 Y17132.1 Psychroserpens aff. burtonensis 698 2.6.2.1.3.2.6246 OTU 3 seqs prokMSA_id:21242 AY005075.1 subgingival dental plaque clone BM058 prokMSA_id:23229 AF385569.1 purified crevicular epithelial cells clone BU084 oral prokMSA_id:73111 AY134894.1 Capnocytophaga sp. oral clone BR085 2.6.2.1.3.2.6248 OTU 2 seqs prokMSA_id:2367 U42010.1 Unknown prokMSA_id:37716 AY005073.1 Capnocytophaga sp. oral strain str. S3 2.6.2.1.3.2.6251 OTU 1 seq prokMSA_id:2268 AF050625.1 contaminated aquifer clone WsCH39 2.6.2.1.3.2.6252 OTU 1 seq prokMSA_id:61850 AF449259.1 Riftia pachyptila's tube clone R103-B20 2.6.2.1.3.2.6254 OTU 2 seqs prokMSA_id:23950 AF236016.1 CFB group isolate str. A0653 prokMSA_id:112578 AY904351.1 Flavobacillus indica str. GPTSA100-9 2.6.2.1.3.2.6256 OTU 1 seq prokMSA_id:41855 AF367853.1 kanamycin resistant isolate str. AG 2.6.2.1.3.2.6269 OTU 1 seq prokMSA_id:61189 AY080916.1 acidic forest soil clone UC1 2.6.2.1.3.2.6274 OTU 1 seq prokMSA_id:43553 AF087056.1 clone BS7 2.6.2.1.3.2.6284 OTU 1 seq prokMSA_id:2270 AF087053.1 clone BS1 2.6.2.1.3.2.6285 OTU 1 seq prokMSA_id:25565 AF424351.1 CFB group clone MERTZ_0CM_154 2.6.2.1.3.2.6310 OTU 1 seq prokMSA_id:70274 AF208293.1 Zobellia galactanivorans str. Dsij 2.6.2.1.3.2.6313 OTU 1 seq prokMSA_id:20632 AY037749.1 earthworm cast clone C147 2.6.2.1.3.2.6322 OTU 1 seq prokMSA_id:27491 AF417885.1 antarctic soil clone bh2.35 2.6.2.1.3.3 sf_3 4 seqs 2.6.2.1.3.3.6034 OTU 4 seqs prokMSA_id:2312 AB016515.1 Flavobacterium columnare str. EK-28 (IAM 14820) prokMSA_id:2315 AB015480.1 Flavobacterium columnare str. LP 8 prokMSA_id:109884 AY842901.1 Flavobacterium columnare str. Ga-6-93 prokMSA_id:110962 AY842900.1 Flavobacterium columnare str. LV339-01 2.6.2.1.4 Unclassified 17 seqs 2.6.2.1.4.1 sf_3 17 seqs 2.6.2.1.4.1.5248 OTU 1 seq prokMSA_id:86113 AY274839.1 Delaware River estuary clone 1G12 2.6.2.1.4.1.5350 OTU 1 seq prokMSA_id:73074 AF493694.1 Taff River epilithon isolate str. RW262 2.6.2.1.4.1.5430 OTU 1 seq prokMSA_id:24630 AB035556.1 marine strain:GY12 clone GY12 2.6.2.1.4.1.5461 OTU 1 seq prokMSA_id:80707 AF449770.1 CFB group clone ML310M-46 2.6.2.1.4.1.5586 OTU 1 seq prokMSA_id:2477 AJ224942.1 Koll-22 2.6.2.1.4.1.5689 OTU 1 seq prokMSA_id:79316 AF382110.1 bacterioplankton clone ZA2515c 2.6.2.1.4.1.5900 OTU 2 seqs prokMSA_id:21344 Z88577.1 HOS19 prokMSA_id:82792 AY274868.1 Delaware River estuary clone 1A5 2.6.2.1.4.1.6006 OTU 1 seq prokMSA_id:65462 AY102323.1 heavy metal-contaminated soil clone a13121 2.6.2.1.4.1.6144 OTU 1 seq prokMSA_id:28868 AJ318122.1 Waste-gas biofilter clone BIfcii9 2.6.2.1.4.1.6225 OTU 1 seq prokMSA_id:2255 AF087043.1 activated sludge clone BA2 2.6.2.1.4.1.6258 OTU 1 seq prokMSA_id:42542 AY028207.1 exposed to diatom detritus isolate str. BBFL7 BBFL7 2.6.2.1.4.1.6321 OTU 5 seqs prokMSA_id:2427 AB017046.1 Cytophaga sp. str. J18-M01 prokMSA_id:2428 AB017047.1 Cytophaga sp. str. AA8-2 prokMSA_id:2429 AB017048.1 Cytophaga sp. str. AA8-3 prokMSA_id:70738 AF359551.1 Alexandrium lusitanicum NEPCC 253 prokMSA_id:79767 AY195836.1 Kordia algicida str. OT-1 2.6.3 KSA1 12 seqs 2.6.3.1 Unclassified 12 seqs 2.6.3.1.1 Unclassified 12 seqs 2.6.3.1.1.1 sf_1 12 seqs 2.6.3.1.1.1.5833 OTU 4 seqs prokMSA_id:62692 AF507870.1 Mono Lake at depth 2 m station 6 July 2000 clone ML602J-37 bacterium prokMSA_id:63866 AF452591.1 CFB group clone ML110J-29 prokMSA_id:80582 AF449784.1 CFB group clone ML615J-21 prokMSA_id:80977 AF449782.1 CFB group clone ML602M-3 2.6.3.1.1.1.5951 OTU 3 seqs prokMSA_id:79775 AF449785.1 CFB group clone ML615J-4 prokMSA_id:80577 AF449778.1 CFB group clone ML513M-12 prokMSA_id:80853 AF449783.1 CFB group clone ML615J-16 2.6.3.1.1.1.6008 OTU 4 seqs prokMSA_id:62687 AF507873.1 Mono Lake at depth 23 m station 6 July 2000 clone ML623J-29 prokMSA_id:80578 AF449773.1 CFB group clone ML310M-34 prokMSA_id:80757 AF449772.1 CFB group clone ML310M-18 prokMSA_id:80875 AF449774.1 CFB group clone ML310M-40 2.6.3.1.1.1.6205 OTU 1 seq prokMSA_id:62487 AF513957.1 Cytophagales clone LA7-B21N 2.6.4 Sphingobacteria 542 seqs 2.6.4.1 Sphingobacteriales 542 seqs 2.6.4.1.1 Crenotrichaceae 163 seqs 2.6.4.1.1.1 sf_11 163 seqs 2.6.4.1.1.1.5254 OTU 1 seq prokMSA_id:22060 AF255633.1 EBPR sludge clone Ebpr5 2.6.4.1.1.1.5266 OTU 1 seq prokMSA_id:27437 AF234056.1 Sturt arid-zone soil clone #0319-2D13 2.6.4.1.1.1.5270 OTU 5 seqs prokMSA_id:29905 AF217497.1 Rhodothermus marinus str. PRQ-55 prokMSA_id:35404 AF217495.1 Rhodothermus marinus str. DSM 4253 prokMSA_id:37111 AF217498.1 Rhodothermus marinus str. NR-29 prokMSA_id:43102 AF217493.1 Rhodothermus marinus str. JCM 9785T prokMSA_id:74734 AF217494.1 Rhodothermus marinus str. DSM 4252T 2.6.4.1.1.1.5271 OTU 1 seq prokMSA_id:2650 AB015587.1 deep-sea sediment clone BD7-14 2.6.4.1.1.1.5281 OTU 1 seq prokMSA_id:2521 AF078775.1 Chitinophaga pinensis str. ACM 2034 2.6.4.1.1.1.5283 OTU 1 seq prokMSA_id:70346 AF361195.1 mesoeutrophic reservoir clone 09 2.6.4.1.1.1.5284 OTU 1 seq prokMSA_id:2522 AF013539.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.6.4.1.1.1.5288 OTU 1 seq prokMSA_id:2523 AF013562.2 Flexibacterial affiliation clone 2.6.4.1.1.1.5289 OTU 1 seq prokMSA_id:17675 AJ318153.1 Waste-gas biofilter clone BIjii2 2.6.4.1.1.1.5310 OTU 1 seq prokMSA_id:70292 AY038774.1 epilithon clone TAF-B80 2.6.4.1.1.1.5314 OTU 1 seq prokMSA_id:52719 AJ289995.1 Germany: Lake Fuchskuhle north basin clone FukuN24 FukuN24 2.6.4.1.1.1.5327 OTU 1 seq prokMSA_id:2536 AF087079.1 clone MK07 2.6.4.1.1.1.5328 OTU 1 seq prokMSA_id:2538 AF087071.1 activated sludge clone MK04 2.6.4.1.1.1.5334 OTU 1 seq prokMSA_id:103987 AB117715.1 autotrophic nitrifying biofilm clone NB-11 2.6.4.1.1.1.5344 OTU 1 seq prokMSA_id:2540 AB015265.1 Cytophaga sp. JTB251 2.6.4.1.1.1.5347 OTU 1 seq prokMSA_id:73931 AJ290034.1 Austria: Lake Gossenkoellesee clone GKS2-217 GKS2-217 2.6.4.1.1.1.5348 OTU 1 seq prokMSA_id:2546 AF039294.1 Lewinella nigricans str. ATCC23147 2.6.4.1.1.1.5354 OTU 3 seqs prokMSA_id:22940 AJ289993.1 Germany: Lake Fuchskuhle north basin clone FukuN21 FukuN21 prokMSA_id:50093 AJ289963.1 AH47 prokMSA_id:72978 AF361187.1 Flexibacter sp. str. CF 1 2.6.4.1.1.1.5358 OTU 1 seq prokMSA_id:2548 AF142895.1 clone EKHO-12 2.6.4.1.1.1.5359 OTU 1 seq prokMSA_id:2549 AF170780.1 Lewinella sp. clone QSSC9L-2 2.6.4.1.1.1.5375 OTU 1 seq prokMSA_id:2550 AF039292.1 Lewinella cohaerens str. ATCC23123 2.6.4.1.1.1.5378 OTU 1 seq prokMSA_id:2551 AF039295.1 Lewinella persicus str. ATCC23167 2.6.4.1.1.1.5381 OTU 1 seq prokMSA_id:2555 L10944.1 marine snow clone agg32 2.6.4.1.1.1.5382 OTU 1 seq prokMSA_id:2556 AF142869.1 clone BURTON-51 2.6.4.1.1.1.5384 OTU 1 seq prokMSA_id:2558 AF170779.1 Cytophagales clone QSSC9L-1 2.6.4.1.1.1.5387 OTU 1 seq prokMSA_id:16825 AJ290005.1 Germany: Lake Fuchskuhle clone FukuN47 2.6.4.1.1.1.5389 OTU 1 seq prokMSA_id:82843 AY238335.1 Flexibacter sp. str. MDA2495 2.6.4.1.1.1.5409 OTU 1 seq prokMSA_id:43204 AF255627.1 EBPR sludge clone Ebpr2 2.6.4.1.1.1.5420 OTU 2 seqs prokMSA_id:2644 AJ242997.1 halophilic isolate? EHB-5 prokMSA_id:2645 AJ242998.1 halophilic EHB-2 2.6.4.1.1.1.5449 OTU 1 seq prokMSA_id:37034 AJ318121.1 Waste-gas biofilter clone BIfcii37 2.6.4.1.1.1.5463 OTU 2 seqs prokMSA_id:58621 AB078068.1 Flexibacter sancti str. IFO 16034 prokMSA_id:58639 AB078049.1 Flexibacter filiformis str. IFO 15056 2.6.4.1.1.1.5466 OTU 1 seq prokMSA_id:72740 AF328206.1 clone KS69 2.6.4.1.1.1.5477 OTU 2 seqs prokMSA_id:2534 AF087087.1 activated sludge clone MK09 prokMSA_id:2539 AF087067.1 activated sludge clone MK11 2.6.4.1.1.1.5491 OTU 1 seq prokMSA_id:50373 AJ290025.1 Austria: Lake Gossenkoellesee clone GKS2-106 GKS2-106 2.6.4.1.1.1.5497 OTU 2 seqs prokMSA_id:29244 AB058902.1 Saprospira sp. str. SS95-4 prokMSA_id:30366 AB058901.1 Saprospira sp. str. SS92-11 2.6.4.1.1.1.5543 OTU 1 seq prokMSA_id:60618 AF407678.1 Great Artesian Basin clone Y30 2.6.4.1.1.1.5560 OTU 1 seq prokMSA_id:44289 AY062176.1 marine sediments isolate str. MSC1 2.6.4.1.1.1.5564 OTU 1 seq prokMSA_id:23809 AF255636.1 EBPR sludge clone Ebpr3 2.6.4.1.1.1.5567 OTU 1 seq prokMSA_id:55504 AY124340.1 CS57 2.6.4.1.1.1.5576 OTU 1 seq prokMSA_id:20042 AF314430.1 aerobic phosphorus-removal ecosystem clone PHOS-HE31 2.6.4.1.1.1.5581 OTU 1 seq prokMSA_id:31613 AJ252615.1 Agricultural soil SC-I-12 () clone SC-I-12 bacterium 2.6.4.1.1.1.5592 OTU 2 seqs prokMSA_id:39161 AF255645.1 EBPR sludge clone Ebpr18 prokMSA_id:41847 AF255639.1 EBPR sludge clone Ebpr17 2.6.4.1.1.1.5617 OTU 3 seqs prokMSA_id:29419 AF445721.1 CFB group clone SM2D04 prokMSA_id:33230 AF445681.1 travertine hot spring clone SM1E03 prokMSA_id:87377 AY293499.1 travertine terrace Yellowstone Hot Springs clone FL08B07 2.6.4.1.1.1.5619 OTU 1 seq prokMSA_id:81764 AY211072.1 anaerobic VC-degrading enrichment clone VC10 bacterium 2.6.4.1.1.1.5640 OTU 1 seq prokMSA_id:2519 M58782.1 Flexibacter elegans 2.6.4.1.1.1.5642 OTU 1 seq prokMSA_id:81937 AY218691.1 penguin droppings sediments clone KD8-73 2.6.4.1.1.1.5647 OTU 4 seqs prokMSA_id:33596 AF434946.1 sponge symbiont RSWS18 clone prokMSA_id:45159 AF434944.1 sponge symbiont RSWS16 clone prokMSA_id:60166 AJ347046.1 sponge clone TK44 prokMSA_id:96738 Y14143.1 Rhodothermus marinus ISR03 2.6.4.1.1.1.5654 OTU 1 seq prokMSA_id:63062 AB088636.1 Saprospira grandis str. ATCC23116 2.6.4.1.1.1.5669 OTU 4 seqs prokMSA_id:25133 AY038613.1 lacustrine subsurface sediment clone GL182.1 prokMSA_id:29854 AY038612.1 lacustrine subsurface sediment clone GL182.3 prokMSA_id:50765 AY053480.1 gas hydrate clone AT425_EubA6 prokMSA_id:68460 AF459795.1 Tetraponera binghami symbiont 2.6.4.1.1.1.5677 OTU 1 seq prokMSA_id:50627 AF087046.1 clone BA7 2.6.4.1.1.1.5722 OTU 1 seq prokMSA_id:31329 AY038773.1 epilithon clone TAF-B76 2.6.4.1.1.1.5743 OTU 1 seq prokMSA_id:44087 AF142785.1 clone ACE-3 2.6.4.1.1.1.5772 OTU 1 seq prokMSA_id:82403 AY218571.1 penguin droppings sediments clone KD2-128 2.6.4.1.1.1.5774 OTU 1 seq prokMSA_id:30398 AF195435.1 July collection clone kpj57rc 2.6.4.1.1.1.5790 OTU 7 seqs prokMSA_id:2642 AJ133744.1 halophilic EHB prokMSA_id:2646 AJ242999.1 halophilic isolate? EHB-3 prokMSA_id:27936 AF323501.1 Salinibacter ruber str. M8 prokMSA_id:28419 AF323500.1 Salinibacter ruber prokMSA_id:37202 AF323502.1 Salinibacter ruber str. POLA 18 prokMSA_id:43485 AF323503.1 Salinibacter ruber str. POLA 13 prokMSA_id:51274 AF323499.1 Salinibacter ruber str. M1 2.6.4.1.1.1.5798 OTU 1 seq prokMSA_id:29118 AF277544.1 polar sea ice clone ARCTIC.161 2.6.4.1.1.1.5829 OTU 1 seq prokMSA_id:2563 AF087054.1 activated sludge clone BS2 2.6.4.1.1.1.5832 OTU 1 seq prokMSA_id:58374 AF368190.1 non-EBPR sludge clone SBRT303 2.6.4.1.1.1.5845 OTU 4 seqs prokMSA_id:2541 AJ007871.1 cytophagales clone LD2 prokMSA_id:2542 AJ007874.1 cytophagales clone LD30 prokMSA_id:61777 AJ416157.1 Netherlands:Lake IJssel clone Med0-02 prokMSA_id:71535 AJ416169.1 Netherlands:Lake IJssel clone Urk0-01 2.6.4.1.1.1.5853 OTU 1 seq prokMSA_id:33318 AF277472.1 polar sea ice clone SIC.165 2.6.4.1.1.1.5857 OTU 1 seq prokMSA_id:2508 L11886.1 Cilia-associated respiratory bacillus 2.6.4.1.1.1.5863 OTU 1 seq prokMSA_id:2635 X95071.1 Rhodothermus obamensis 2.6.4.1.1.1.5872 OTU 1 seq prokMSA_id:46428 AJ252666.1 Agricultural soil SC-I-91 () clone SC-I-91 2.6.4.1.1.1.5875 OTU 1 seq prokMSA_id:38912 AF217496.1 Rhodothermus marinus str. PRQ-34 2.6.4.1.1.1.5884 OTU 6 seqs prokMSA_id:25213 AJ295507.1 rape rhizosphere clone wr0053 prokMSA_id:25227 AJ295511.1 rape rhizosphere clone wr0060 prokMSA_id:35540 AJ295472.1 rape rhizosphere clone wr0011 prokMSA_id:37328 AJ295464.1 rape rhizosphere clone wr0003 prokMSA_id:39882 AJ295463.1 rape rhizosphere clone wr0002 prokMSA_id:42289 AJ295528.1 rape rhizosphere clone wr0086 2.6.4.1.1.1.5888 OTU 28 seqs prokMSA_id:74932 AF538339.1 biological soil crust clone prokMSA_id:76380 AF538336.1 biological soil crust clone prokMSA_id:79291 AY188323.1 penguin droppings sediment clone KD6-86 prokMSA_id:80170 AY192292.1 Rocky Mountain alpine soil clone W3-1E prokMSA_id:81076 AY218677.1 penguin droppings sediments clone KD8-102 prokMSA_id:81081 AY218615.1 penguin droppings sediments clone KD3-74 prokMSA_id:81165 AY218619.1 penguin droppings sediments clone KD3-83 prokMSA_id:81417 AY218643.1 penguin droppings sediments clone KD4-68 prokMSA_id:81462 AY218692.1 penguin droppings sediments clone KD8-75 prokMSA_id:81521 AY218630.1 penguin droppings sediments clone KD4-25 prokMSA_id:81734 AY218589.1 penguin droppings sediments clone KD2-72 prokMSA_id:81785 AY218593.1 penguin droppings sediments clone KD2-78 prokMSA_id:81804 AY218658.1 penguin droppings sediments clone KD9-156 prokMSA_id:81845 AY218618.1 penguin droppings sediments clone KD3-81 prokMSA_id:81847 AY218770.1 penguin droppings sediments clone KD6-82 prokMSA_id:81875 AY218751.1 penguin droppings sediments clone KD6-125 prokMSA_id:81935 AY218708.1 clone KD7-36 prokMSA_id:82060 AY218765.1 penguin droppings sediments clone KD6-69 prokMSA_id:82129 AY218733.1 penguin droppings sediments clone KD5-2 prokMSA_id:82169 AY218673.1 penguin droppings sediments clone KD9-68 prokMSA_id:82204 AY218628.1 penguin droppings sediments clone KD4-13 prokMSA_id:82231 AY218681.1 penguin droppings sediments clone KD8-115 prokMSA_id:82277 AY218704.1 penguin droppings sediments clone KD7-116 prokMSA_id:82316 AY218661.1 penguin droppings sediments clone KD9-169 prokMSA_id:82360 AY218753.1 penguin droppings sediments clone KD6-136 prokMSA_id:84350 AY274148.1 gold mine tailings clone D143 prokMSA_id:85906 AY274132.1 gold mine tailings clone D124 prokMSA_id:104156 AY218674.1 penguin droppings sediments clone KD9-69 2.6.4.1.1.1.5925 OTU 1 seq prokMSA_id:16356 AY037715.1 earthworm cast clone C065 2.6.4.1.1.1.5948 OTU 1 seq prokMSA_id:42740 AF423292.1 soil clone 760-2 2.6.4.1.1.1.5970 OTU 1 seq prokMSA_id:40073 AJ290042.1 Germany: Lake Fuchskuhle south basin clone FukuS59 FukuS59 2.6.4.1.1.1.5987 OTU 1 seq prokMSA_id:29927 AJ252697.1 Rhizosphere soil RSC-II-81 () clone RSC-II-81 2.6.4.1.1.1.6003 OTU 1 seq prokMSA_id:47936 AF385548.1 purified crevicular epithelial cells clone AZ105 oral 2.6.4.1.1.1.6036 OTU 1 seq prokMSA_id:35871 AF314431.1 aerobic phosphorus-removal ecosystem clone PHOS-HE35 2.6.4.1.1.1.6049 OTU 1 seq prokMSA_id:59355 AF502210.1 EBPR sludge lab scale clone HP1B19 2.6.4.1.1.1.6050 OTU 1 seq prokMSA_id:62965 AF527580.1 EBPR sludge lab scale clone LPB08 2.6.4.1.1.1.6051 OTU 1 seq prokMSA_id:19837 AJ318142.1 Waste-gas biofilter clone BIhii16 2.6.4.1.1.1.6061 OTU 1 seq prokMSA_id:52545 AJ318154.1 Waste-gas biofilter clone BIjiii32 2.6.4.1.1.1.6111 OTU 2 seqs prokMSA_id:27005 AJ290011.1 Germany: Lake Fuchskuhle south basin clone FukuS23 FukuN23 prokMSA_id:96745 AJ575723.1 lake water clone SW56 2.6.4.1.1.1.6115 OTU 1 seq prokMSA_id:26060 AF424349.1 CFB group clone MERTZ_0CM_89 2.6.4.1.1.1.6123 OTU 1 seq prokMSA_id:58633 AB078055.1 Flexibacter japonensis str. IFO 16041 2.6.4.1.1.1.6130 OTU 1 seq prokMSA_id:47447 AJ252725.1 Potato plant root RC-III-62 () clone RC-III-62 2.6.4.1.1.1.6143 OTU 1 seq prokMSA_id:85194 AF534433.1 Toolik Lake main station at 3 m depth clone TLM09/TLMdgge12a 2.6.4.1.1.1.6148 OTU 1 seq prokMSA_id:47339 AF255635.1 EBPR sludge clone Ebpr1 2.6.4.1.1.1.6150 OTU 1 seq prokMSA_id:71851 AF181568.1 Flexibacter cf. sancti 1 2.6.4.1.1.1.6167 OTU 1 seq prokMSA_id:19885 AF145834.1 Metal-contaminated soil clone K20-37 2.6.4.1.1.1.6171 OTU 1 seq prokMSA_id:32581 AY056829.1 Bifissio spartinae str. AS1.1762 2.6.4.1.1.1.6196 OTU 1 seq prokMSA_id:26459 AJ318185.1 Waste-gas biofilter clone BIti15 2.6.4.1.1.1.6199 OTU 1 seq prokMSA_id:27029 AF314423.1 aerobic phosphorus-removal ecosystem clone PHOS-HE45 2.6.4.1.1.1.6243 OTU 1 seq prokMSA_id:42738 AB076886.1 Flexibacter sp. clone:TSL-25 clone TSL-25 2.6.4.1.1.1.6244 OTU 1 seq prokMSA_id:61843 AF529321.1 PCE-contaminated site clone CLi112 2.6.4.1.1.1.6245 OTU 1 seq prokMSA_id:31404 AJ290007.1 Germany: Lake Fuchskuhle clone FukuN54 2.6.4.1.1.1.6249 OTU 3 seqs prokMSA_id:2533 M58790.2 Haliscomenobacter hydrossis prokMSA_id:76801 AY168729.2 arsenite-oxidizing biofilm clone Hot Creek 49 prokMSA_id:79482 AY187353.1 drinking-water biofilm clone csbio160175 2.6.4.1.1.1.6267 OTU 4 seqs prokMSA_id:70436 AF316118.1 Cilia- respiratory isolate str. 96-1590 prokMSA_id:71059 AF316116.1 Cilia- respiratory isolate str. 246-57 prokMSA_id:71156 AF316117.1 Cilia- respiratory isolate str. 95-15405 prokMSA_id:71903 AF316115.1 Cilia- respiratory isolate str. 243-54 2.6.4.1.1.1.6281 OTU 1 seq prokMSA_id:34759 AF403192.1 aerosol clone cvf122192 2.6.4.1.1.1.6320 OTU 1 seq prokMSA_id:18670 AF445092.1 sandy loam rhizosphere Thlaspi caerulescens clone Tc12 2.6.4.1.1.1.6325 OTU 1 seq prokMSA_id:2512 M62798.1 Flavobacterium ferrugineum 2.6.4.1.1.1.691 OTU 2 seqs prokMSA_id:2636 X80994.1 Rhodothermus marinus prokMSA_id:2637 X77140.1 Rhodothermus marinus 2.6.4.1.2 Flammeovirgaceae 7 seqs 2.6.4.1.2.1 sf_1 4 seqs 2.6.4.1.2.1.5824 OTU 1 seq prokMSA_id:2626 L11703.1 Thermonema lapsum 2.6.4.1.2.1.5895 OTU 3 seqs prokMSA_id:2628 Y08956.1 Thermonema rossianum str. NR-27T prokMSA_id:2629 Y08957.1 Thermonema rossianum str. SC-1 prokMSA_id:2630 Y08958.1 Thermonema rossianum str. AG3-1 2.6.4.1.2.2 sf_2 1 seq 2.6.4.1.2.2.5839 OTU 1 seq prokMSA_id:2569 AF039296.1 Flexithrix dorotheae str. ATCC23163 2.6.4.1.2.3 sf_4 1 seq 2.6.4.1.2.3.5304 OTU 1 seq prokMSA_id:25963 AF366581.1 Acanthamoeba sp. str. TUMSJ-321 2.6.4.1.2.4 sf_5 1 seq 2.6.4.1.2.4.6084 OTU 1 seq prokMSA_id:58610 AB078078.1 Microscilla arenaria str. IFO 15982 2.6.4.1.3 Flexibacteraceae 227 seqs 2.6.4.1.3.1 sf_10 1 seq 2.6.4.1.3.1.5253 OTU 1 seq prokMSA_id:80101 AF449765.1 CFB group clone ML1218M-32 2.6.4.1.3.2 sf_11 4 seqs 2.6.4.1.3.2.5525 OTU 1 seq prokMSA_id:60616 AF407680.1 Great Artesian Basin clone Y63 2.6.4.1.3.2.5898 OTU 1 seq prokMSA_id:2647 AF018187.1 temperature clone env.OPS 2 2.6.4.1.3.2.638 OTU 2 seqs prokMSA_id:1386 AF027007.1 Cytophagales clone OPS1 prokMSA_id:2640 AF027006.1 hot spring clone OPB88 2.6.4.1.3.3 sf_19 219 seqs 2.6.4.1.3.3.5286 OTU 1 seq prokMSA_id:29165 X85209.1 Type 0411 2.6.4.1.3.3.5305 OTU 3 seqs prokMSA_id:2614 X90704.1 gram negative isolate str. IFAM 2074 prokMSA_id:2615 X90701.1 gram negative isolate str. IFAM 3211 prokMSA_id:2618 X90705.1 gram negative isolate str. IFAM 3359 2.6.4.1.3.3.5307 OTU 1 seq prokMSA_id:58606 AB078082.1 Microscilla sericea str. IFO 16561 2.6.4.1.3.3.5308 OTU 1 seq prokMSA_id:74081 AY038797.1 epilithon clone TAF-A99 2.6.4.1.3.3.5312 OTU 1 seq prokMSA_id:44553 AF403186.1 aerosol clone cvf122070 2.6.4.1.3.3.5315 OTU 1 seq prokMSA_id:66632 AY094494.1 extracted chamber connected to Ocean Drilling Program site 892b clone 1-13 bacterium 2.6.4.1.3.3.5321 OTU 7 seqs prokMSA_id:35716 AJ289964.1 AH57 prokMSA_id:67489 AF493693.1 Flectobacillus sp. str. EP293 prokMSA_id:72722 AJ011696.1 Flectobacillus sp. GWF20A prokMSA_id:77370 AY065626.1 Flectobacillus speluncae str. GWF20B prokMSA_id:77393 AJ535729.1 Arcicella aquatica str. NO-502 prokMSA_id:77560 AY065625.1 Flectobacillus speluncae str. GWF20C prokMSA_id:91727 AY345549.1 Lake Wai'ele'ele water isolate str. H22 2.6.4.1.3.3.5340 OTU 1 seq prokMSA_id:71316 AJ290035.1 Austria: Lake Gossenkoellesee clone GKS2-33 GKS2-33 2.6.4.1.3.3.5345 OTU 1 seq prokMSA_id:2601 AF142843.1 clone BURTON-24 2.6.4.1.3.3.5346 OTU 1 seq prokMSA_id:18766 AF170787.1 Flexibacter sp. clone QSSC9L-9 2.6.4.1.3.3.5357 OTU 1 seq prokMSA_id:58624 AB078065.1 Flexibacter ruber str. IFO 16677 2.6.4.1.3.3.5364 OTU 15 seqs prokMSA_id:71214 AJ244689.1 Cyclobacterium sp. str. V4.MS.32 = MM_2749 V4.MS.32 prokMSA_id:80523 AF468433.1 Arctic sea ice ARK10280 prokMSA_id:85114 AJ441012.1 lake microbial mat isolate str. LMG 21482 prokMSA_id:93224 AJ577141.1 Algoriphagus antarcticus str. LMG 21980 prokMSA_id:93561 AJ577267.1 Algoriphagus antarcticus str. LMG 21482 prokMSA_id:94046 AJ577142.1 Algoriphagus antarcticus str. LMG 21983 prokMSA_id:100047 AB086623.1 Cytophaga sp. str. MBIC01539 prokMSA_id:100794 AY699794.1 Algoriphagus yeomjeoni str. MSS-160 prokMSA_id:100952 AY699795.1 Algoriphagus yeomjeoni str. MSS-161 prokMSA_id:102395 AJ608641.1 Algoriphagus ratkowskyi str. LMG 21435 prokMSA_id:107447 AJ575263.1 Algoriphagus winogradskyi str. LMG 21969 prokMSA_id:107593 AJ575264.1 Algoriphagus aquimarinus str. LMG 21971 prokMSA_id:107745 AJ575265.1 Algoriphagus chordae str. LMG 21970 prokMSA_id:109500 AY835922.1 Algoriphagus locisalis str. MSS-170 prokMSA_id:110855 AY835923.1 Algoriphagus locisalis str. MSS-171 2.6.4.1.3.3.5365 OTU 2 seqs prokMSA_id:18798 AF289149.1 freshwater clone PRD01a001B prokMSA_id:28897 AF361200.1 mesoeutrophic reservoir clone 30 2.6.4.1.3.3.5366 OTU 1 seq prokMSA_id:58627 AB078061.1 Flexibacter roseolus str. IFO 16030 2.6.4.1.3.3.5368 OTU 2 seqs prokMSA_id:58616 AB078072.1 Flexibacter tractuosus str. IFO 15989 prokMSA_id:58617 AB078071.1 Flexibacter tractuosus str. IFO 15981 2.6.4.1.3.3.5372 OTU 1 seq prokMSA_id:82467 AJ548897.1 clone BIOEST-8 2.6.4.1.3.3.5404 OTU 11 seqs prokMSA_id:2426 M58769.2 Cytophaga latercula prokMSA_id:2430 D12665.1 Cytophaga latercula prokMSA_id:44430 AF425755.1 CFB group clone MERTZ_0CM_94 prokMSA_id:61118 AF530141.1 Cf. Cytophaga sp. isolate str. MGP-28/AN2 prokMSA_id:67317 AF493686.1 Flavobacteriaceae str. SW334 prokMSA_id:67318 AF493685.1 Flavobacteriaceae str. SW152 prokMSA_id:67319 AF493684.1 Flavobacteriaceae str. SW062 prokMSA_id:67320 AF493683.1 Flavobacteriaceae str. SW058 prokMSA_id:106400 AY608406.1 Aquimarina muelleri str. KMM 6020 prokMSA_id:106561 AY608407.1 Aquimarina muelleri str. KMM 6021 prokMSA_id:106718 AY608408.1 Aquimarina muelleri str. KMM 6028 2.6.4.1.3.3.5416 OTU 4 seqs prokMSA_id:82506 AY279981.1 Spirosoma escalantus str. HDK691; ATCC BAA-768 prokMSA_id:83668 AY279979.1 Spirosoma escalantus str. HDK627; ATCC BAA-767 prokMSA_id:83691 AY279980.1 Spirosoma escalantus str. HDK201; ATCC BAA-766 prokMSA_id:85731 AY279982.1 Spirosoma linguale str. ATCC 23276 2.6.4.1.3.3.5421 OTU 5 seqs prokMSA_id:55430 AB073572.2 Cytophaga sp. I-689 prokMSA_id:66036 AB073571.2 Cytophaga sp. I-105 prokMSA_id:66037 AB073570.2 Cytophaga sp. I-1147 prokMSA_id:66038 AB073569.2 Cytophaga sp. I-602 prokMSA_id:66039 AB073568.2 Cytophaga sp. I-601 2.6.4.1.3.3.5520 OTU 2 seqs prokMSA_id:20292 AF408275.1 Hymenobacter sp. clone KL-2-4-9 prokMSA_id:42223 AF408274.1 Hymenobacter sp. clone KL-2-4-2 2.6.4.1.3.3.5522 OTU 1 seq prokMSA_id:40349 AF408276.1 Hymenobacter sp. clone KL-26-2-11 2.6.4.1.3.3.5542 OTU 4 seqs prokMSA_id:66029 AB073595.2 Cytophaga sp. I-1787 prokMSA_id:66030 AB073594.2 Cytophaga sp. I-976 prokMSA_id:66031 AB073593.2 Cytophaga sp. I-482 prokMSA_id:70072 AB073596.2 Cytophaga sp. I-1789 2.6.4.1.3.3.5545 OTU 1 seq prokMSA_id:24449 AF408309.1 Hymenobacter group clone KL-37-1-8 2.6.4.1.3.3.5547 OTU 3 seqs prokMSA_id:66032 AB073591.2 Cytophaga sp. T-561 prokMSA_id:98937 AJ575266.1 Cyclobacterium marinum str. LMG 13164 prokMSA_id:105344 AY533665.1 Cyclobacterium marinum str. DSM 745 2.6.4.1.3.3.5563 OTU 1 seq prokMSA_id:66035 AB073573.2 Cytophaga sp. I-545 2.6.4.1.3.3.5566 OTU 1 seq prokMSA_id:82548 AY264838.1 Hongiella mannitolivorans str. IMSNU 14012 JC2050 2.6.4.1.3.3.5587 OTU 1 seq prokMSA_id:2478 AB015264.1 deepest cold-seep area Japan Trench clone JTB250 sp. 2.6.4.1.3.3.5595 OTU 1 seq prokMSA_id:77448 AY167836.1 Taxeobacter sp. str. SAFR-023 2.6.4.1.3.3.5602 OTU 1 seq prokMSA_id:59812 AY133378.1 coastal Antarctic sediment clone BB2_75 2.6.4.1.3.3.5662 OTU 4 seqs prokMSA_id:18627 AJ278780.1 Antarctic seawater isolate str. R7695 prokMSA_id:25304 AF367846.1 kanamycin resistant isolate str. Km5 prokMSA_id:26032 AF469384.1 clone CTD28B prokMSA_id:102544 AJ780980.1 KMM 6066 2.6.4.1.3.3.5667 OTU 1 seq prokMSA_id:81798 AY218749.1 penguin droppings sediments clone KD6-118 2.6.4.1.3.3.5682 OTU 1 seq prokMSA_id:66996 AB058919.1 Reichenbachia agariperforans str. KMM 3525 2.6.4.1.3.3.5701 OTU 1 seq prokMSA_id:19323 AF245645.1 CFB groupbacterium clone NAC60-3 2.6.4.1.3.3.5728 OTU 1 seq prokMSA_id:69822 AB073564.2 Cytophaga sp. str. MBIC04693 2.6.4.1.3.3.5729 OTU 1 seq prokMSA_id:77550 AY167829.1 Taxeobacter sp. str. SAFR-033 2.6.4.1.3.3.5744 OTU 1 seq prokMSA_id:26447 AF445684.1 travertine hot spring clone SM1E06 2.6.4.1.3.3.5748 OTU 1 seq prokMSA_id:2604 Y18836.1 Taxeobacter gelupurpurascens str. Txg1 2.6.4.1.3.3.5751 OTU 1 seq prokMSA_id:2605 Y18837.1 Taxeobacter sp. str. Txc1 2.6.4.1.3.3.5754 OTU 1 seq prokMSA_id:2608 AF013535.2 Pinyon Pine rhizosphere soil near Cosnino Arizona clone 2.6.4.1.3.3.5773 OTU 1 seq prokMSA_id:25907 AF403187.1 aerosol clone cvf122218 2.6.4.1.3.3.5775 OTU 1 seq prokMSA_id:23225 AF449431.1 Hymenobacter sp. str. MJ1 2.6.4.1.3.3.5780 OTU 1 seq prokMSA_id:36284 Y15342.1 Microscilla sp. PRLIST05 2.6.4.1.3.3.5793 OTU 3 seqs prokMSA_id:22447 AF235111.1 Cytophaga sp. str. KT11ds2 prokMSA_id:61968 AJ244703.1 Flavobacterium sp. str. V4.MS.12 = MM_2730 V4.MS.12 prokMSA_id:85151 AJ542652.1 Cytophaga sp. 4301-10/1 2.6.4.1.3.3.5794 OTU 1 seq prokMSA_id:2612 AF146228.1 clone CLEAR-1 2.6.4.1.3.3.5796 OTU 1 seq prokMSA_id:74295 AY038787.1 epilithon clone TAF-B100 2.6.4.1.3.3.5805 OTU 1 seq prokMSA_id:2617 X90702.1 gram negative isolate str. IFAM 3359 2.6.4.1.3.3.5842 OTU 1 seq prokMSA_id:45409 AJ252578.1 agricultural soil SI-11 2.6.4.1.3.3.5849 OTU 1 seq prokMSA_id:71338 AY038784.1 epilithon clone TAF-A119 2.6.4.1.3.3.5854 OTU 1 seq prokMSA_id:1911 AB015525.1 deep-sea sediment clone BD1-16 2.6.4.1.3.3.5856 OTU 1 seq prokMSA_id:1914 AJ240979.1 Norway:(Svalbard)Hornsund clone Sva1038 2.6.4.1.3.3.5866 OTU 1 seq prokMSA_id:2574 Y18835.1 Taxeobacter ocellatus str. Myx2105 2.6.4.1.3.3.5869 OTU 1 seq prokMSA_id:2575 Y18838.1 Taxeobacter ocellatus str. Txo1 2.6.4.1.3.3.5879 OTU 1 seq prokMSA_id:19038 AF408273.1 Hymenobacter group clone KL-2-5-13 2.6.4.1.3.3.5891 OTU 36 seqs prokMSA_id:17682 AF408281.1 Hymenobacter group clone KL-11-1-4 prokMSA_id:18171 AF408317.1 Hymenobacter group clone KL-114-2-8 prokMSA_id:18440 AF408285.1 Hymenobacter group clone KL-13-4-2 prokMSA_id:18647 AF408320.1 Hymenobacter group clone KL-114-2-1 prokMSA_id:18835 AF408321.1 Hymenobacter group clone KL-111-2-4 prokMSA_id:19707 AF408318.1 Hymenobacter group clone KL-114-2-3 prokMSA_id:21658 AF408307.1 Hymenobacter group clone KL-93-1-11 prokMSA_id:22065 AF408301.1 Hymenobacter group clone KL-94-2-7 prokMSA_id:23697 AF408293.1 Hymenobacter group clone KL-48-1-8 prokMSA_id:24199 AF408288.1 Hymenobacter group clone KL-27-1-4 prokMSA_id:24408 AF408315.1 Hymenobacter group clone KL-125-4-4 prokMSA_id:26934 AF408319.1 Hymenobacter group clone KL-114-2-2 prokMSA_id:27258 AF408322.1 Hymenobacter group clone KL-111-2-2 prokMSA_id:28499 AF408283.1 Hymenobacter group clone KL-114-2-5 prokMSA_id:29431 AF408310.1 Hymenobacter group clone KL-26-2-7 prokMSA_id:29557 AF408289.1 Hymenobacter group clone KL-27-1-8 prokMSA_id:29868 AF408292.1 Hymenobacter group clone KL-48-1-3 prokMSA_id:36763 AF408286.1 Hymenobacter group clone KL-2-5-1 prokMSA_id:37382 AF408312.1 Hymenobacter group clone KL-26-2-3 prokMSA_id:37430 AF408314.1 Hymenobacter group clone KL-26-2-14 prokMSA_id:38961 AF408313.1 Hymenobacter group clone KL-26-2-15 prokMSA_id:39156 AF408297.1 Hymenobacter group clone KL-59-7-4 prokMSA_id:39638 AF408303.1 Hymenobacter group clone KL-94-2-11 prokMSA_id:39913 AF408302.1 Hymenobacter group clone KL-94-2-4 prokMSA_id:39988 AF408304.1 Hymenobacter group clone KL-94-1-4 prokMSA_id:40455 AF408284.1 Hymenobacter group clone KL-125-4-11 prokMSA_id:42218 AF408291.1 Hymenobacter group clone KL-36-1-7 prokMSA_id:42810 AF408294.1 Hymenobacter group clone KL-53-2-5 prokMSA_id:42815 AF408282.1 Hymenobacter group clone KL-111-2-9 prokMSA_id:45352 AF408311.1 Hymenobacter group clone KL-26-2-4 prokMSA_id:47580 AF408299.1 Hymenobacter group clone KL-94-1-6 prokMSA_id:49913 AF408305.1 Hymenobacter group clone KL-94-1-3 prokMSA_id:50263 AF408298.1 Hymenobacter group clone KL-93-1-12 prokMSA_id:52329 AF408290.1 Hymenobacter group clone KL-27-1-9 prokMSA_id:52380 AF408296.1 Hymenobacter group clone KL-59-7-9 prokMSA_id:71125 AF408316.1 Hymenobacter group clone KL-125-4-2 2.6.4.1.3.3.5902 OTU 5 seqs prokMSA_id:23691 AF408306.1 Hymenobacter group clone KL-94-1-15 prokMSA_id:36577 AF408279.1 Taxeobacter sp. clone KL-59-7-7 prokMSA_id:39725 AF408287.1 Hymenobacter group clone KL-27-1-12 prokMSA_id:41203 AF408295.1 Hymenobacter group clone KL-59-7-8 prokMSA_id:46108 AF408278.1 Taxeobacter sp. clone KL-2-4-3 2.6.4.1.3.3.5910 OTU 1 seq prokMSA_id:2586 AF170733.1 Flexibacter-like isolate str. QSSC1-11 2.6.4.1.3.3.5911 OTU 1 seq prokMSA_id:2587 AF170778.1 Flexibacter sp. clone QSSC8L-18 2.6.4.1.3.3.5912 OTU 1 seq prokMSA_id:2588 AB015528.1 deep-sea sediment clone BD1-27 2.6.4.1.3.3.5936 OTU 1 seq prokMSA_id:2592 AJ011917.1 Flectobacillus sp. str. MWH38 filament-forming isolate fresh-water enrichments 2.6.4.1.3.3.5938 OTU 1 seq prokMSA_id:2595 AF137029.1 Dyadobacter fermentens str. NS114 2.6.4.1.3.3.5939 OTU 1 seq prokMSA_id:2596 AF137381.1 Runella zeae str. NS12 2.6.4.1.3.3.5944 OTU 1 seq prokMSA_id:60399 AF513436.1 Flexibacter group isolate str. LA48 2.6.4.1.3.3.5959 OTU 3 seqs prokMSA_id:82819 AY279977.1 Spirosoma navajo str. HDK666; ATCC BAA-763 prokMSA_id:84249 AY279978.1 Spirosoma navajo str. HDK660; ATCC BAA-764 prokMSA_id:85754 AY279976.1 Spirosoma navajo str. HDK663; ATCC BAA-765 2.6.4.1.3.3.5962 OTU 1 seq prokMSA_id:50855 AJ252694.1 Rhizosphere soil RSC-II-76 () clone RSC-II-76 2.6.4.1.3.3.5965 OTU 1 seq prokMSA_id:33872 AF215634.1 Acanthamoeba spp. symbiont 2.6.4.1.3.3.5978 OTU 1 seq prokMSA_id:38021 AF424348.1 CFB group clone MERTZ_0CM_57 2.6.4.1.3.3.5984 OTU 1 seq prokMSA_id:29921 AY038782.1 epilithon clone TAF-A28 2.6.4.1.3.3.5992 OTU 2 seqs prokMSA_id:24934 AF203475.1 Cytophaga marinoflava str. LMG1345T; ATCC19326T prokMSA_id:82233 AY167315.1 Cytophaga marinoflava str. ANT9103 2.6.4.1.3.3.5994 OTU 4 seqs prokMSA_id:41126 AF408272.1 Taxeobacter sp. clone KL-2-5-12 prokMSA_id:70352 AF408308.1 Hymenobacter group clone KL-93-1-10 prokMSA_id:82222 AJ549285.1 Hymenobacter sp. str. NS/50 prokMSA_id:83153 AJ440980.1 lake microbial mat isolate str. R-7572 2.6.4.1.3.3.5999 OTU 1 seq prokMSA_id:41046 AF403188.1 aerosol clone cvf122197 2.6.4.1.3.3.6019 OTU 1 seq prokMSA_id:85985 AY264839.1 Hongiella halophila str. IMSNU 14013 JC2051 2.6.4.1.3.3.6048 OTU 1 seq prokMSA_id:52858 AY038791.1 epilithon clone TAF-A130 2.6.4.1.3.3.6054 OTU 1 seq prokMSA_id:49920 AF314419.1 aerobic sludge clone PHOS-HE21 2.6.4.1.3.3.6055 OTU 1 seq prokMSA_id:65682 AF507701.1 forest soil clone C0108 2.6.4.1.3.3.6056 OTU 1 seq prokMSA_id:32162 AY038778.1 epilithon clone TAF-B75 2.6.4.1.3.3.6059 OTU 1 seq prokMSA_id:20151 AJ290033.1 Austria: Lake Gossenkoellesee clone GKS2-216 GKS2-216 2.6.4.1.3.3.6087 OTU 1 seq prokMSA_id:59894 AY133105.1 TCE-contaminated site clone ccspost2184 2.6.4.1.3.3.6124 OTU 1 seq prokMSA_id:58634 AB078054.1 Flexibacter flexilis subsp. pelliculosus str. IFO 16028 subsp. 2.6.4.1.3.3.6159 OTU 2 seqs prokMSA_id:82949 AY264840.1 Hongiella ornithinivorans str. IMSNU 14014 JC2052 prokMSA_id:100389 AY264841.1 Flexibacteraceae str. IMSNU 14015 JC2053 2.6.4.1.3.3.6184 OTU 1 seq prokMSA_id:32392 AY038796.1 epilithon clone TAF-B84 2.6.4.1.3.3.6194 OTU 1 seq prokMSA_id:24593 AJ431335.1 CFB group ikaite c9 2.6.4.1.3.3.6217 OTU 1 seq prokMSA_id:36224 AF408270.1 Hymenobacter group clone KL-53-2-6 2.6.4.1.3.3.6218 OTU 1 seq prokMSA_id:19106 AB015937.2 Microscilla sp. Nano 1 2.6.4.1.3.3.6219 OTU 1 seq prokMSA_id:40101 AF445698.1 travertine hot spring clone SM1G04 2.6.4.1.3.3.6224 OTU 1 seq prokMSA_id:18161 AF424338.1 CFB group clone MERTZ_2CM_107 2.6.4.1.3.3.6230 OTU 23 seqs prokMSA_id:2585 AB001518.1 Ixodes scapularis endosymbiont prokMSA_id:27784 AF319783.1 Encarsia pergandiella asexual line endosymbiont asexual prokMSA_id:38123 AF350221.1 endosymbiont Brevipalpus phoenicis prokMSA_id:82482 AY285777.1 Encarsia sp. 3 symbiont prokMSA_id:82648 AY279414.1 Oppiella nova symbiont prokMSA_id:82769 AY279401.1 Brevipalpus obovatus symbiont prokMSA_id:82774 AY279412.1 Brevipalpus phoenicis Riverside CA USA strain symbiont prokMSA_id:82984 AY279411.1 Balaustium sp. symbiont prokMSA_id:83033 AY279405.1 Aphytis sp. 3 symbiont prokMSA_id:83219 AY279406.1 Encarsia sp. 2 symbiont prokMSA_id:83469 AY279402.1 Aspidiotus nerii symbiont prokMSA_id:83840 AY279404.1 Aphytis lingnanensis symbiont prokMSA_id:83888 AY279415.1 Dicranotropis hamata symbiont prokMSA_id:84888 AY279403.1 Aphytis sp. 4 symbiont prokMSA_id:84920 AY279410.1 Petrobia harti symbiont prokMSA_id:85539 AY279408.1 Encarsiella noyesi symbiont prokMSA_id:85710 AY279409.1 Bemisia tabaci biotype symbiont prokMSA_id:86289 AY279407.1 Encarsia lutea symbiont prokMSA_id:92039 AB116515.1 Brevipalpus lewisi symbiont prokMSA_id:93122 AB116514.1 Brevipalpus californicus symbiont prokMSA_id:100336 AY331187.1 Encarsia hispida symbiont prokMSA_id:100973 AY635291.1 Endosymbiont Metaseiulus occidentalis clone pAJ233 prokMSA_id:101847 AY327470.1 Marietta sp. symbiont 2.6.4.1.3.3.6261 OTU 5 seqs prokMSA_id:79655 AF468338.1 Arctic sea ice cryoconite clone ARKCRY-50 prokMSA_id:80153 AF468337.1 Arctic sea ice cryoconite clone ARKCRY-118 prokMSA_id:80290 AF468332.1 melt pond on Arctic sea ice floe clone ARKMP-14 prokMSA_id:80558 AF468342.1 Arctic sea ice cryoconite clone ARKCRY-39 prokMSA_id:81016 AY198110.1 cryoconite hole clone ARKCRY2 2.6.4.1.3.3.6276 OTU 1 seq prokMSA_id:43316 AF408277.1 Hymenobacter group clone KL-27-1-11 2.6.4.1.3.3.6297 OTU 1 seq prokMSA_id:59352 AF502211.1 EBPR sludge lab scale clone HP1A92 2.6.4.1.3.3.6304 OTU 1 seq prokMSA_id:69788 AJ252610.1 Agricultural soil SC-I-6 () clone SC-I-6 2.6.4.1.3.3.6315 OTU 1 seq prokMSA_id:45068 AJ252723.1 Potato plant root RC-III-57 () clone RC-III-57 2.6.4.1.3.3.6319 OTU 4 seqs prokMSA_id:58635 AB078053.1 Flexibacter flexilis str. IFO 16027 prokMSA_id:58636 AB078052.1 Flexibacter flexilis str. IFO 16026 prokMSA_id:58637 AB078051.1 Flexibacter flexilis str. IFO 16025 prokMSA_id:58638 AB078050.1 Flexibacter flexilis str. IFO 15060 2.6.4.1.3.4 sf_20 1 seq 2.6.4.1.3.4.10311 OTU 1 seq prokMSA_id:79101 AJ431236.1 Cytophaga sp. str. BHI60-57B 2.6.4.1.3.5 sf_21 2 seqs 2.6.4.1.3.5.5770 OTU 2 seqs prokMSA_id:2631 AF027008.1 hot spring clone OPB73 prokMSA_id:2632 AF018199.1 hot spring clone env.OPS17 2.6.4.1.4 Saprospiraceae 23 seqs 2.6.4.1.4.1 sf_2 2 seqs 2.6.4.1.4.1.5478 OTU 2 seqs prokMSA_id:59357 AF502208.1 EBPR sludge lab scale clone HP1A94 prokMSA_id:59358 AF502207.1 EBPR sludge lab scale clone HP1A82 2.6.4.1.4.2 sf_4 14 seqs 2.6.4.1.4.2.5433 OTU 3 seqs prokMSA_id:36772 AF445664.1 travertine hot spring clone SM1C07 prokMSA_id:41088 AF445660.1 travertine hot spring clone SM1C03 prokMSA_id:47462 AF445647.1 travertine hot spring clone SM1A06 2.6.4.1.4.2.5457 OTU 2 seqs prokMSA_id:21302 AB058900.1 Saprospira sp. str. SS91-40 prokMSA_id:70825 AB088635.1 Saprospira sp. str. SS98-5 2.6.4.1.4.2.6323 OTU 9 seqs prokMSA_id:2531 AF087096.1 Candidatus Magnospira bakii clone BM15 prokMSA_id:2532 AF087057.1 Candidatus Magnospira bakii clone BM3 prokMSA_id:2559 AF087097.1 Candidatus Magnospira bakii clone BM02 prokMSA_id:2560 AF087091.1 Candidatus Magnospira bakii clone BM16 prokMSA_id:2561 AF087059.1 Candidatus Magnospira bakii clone BM5 prokMSA_id:2562 AF087058.1 Candidatus Magnospira bakii clone BM4 prokMSA_id:21458 AF087095.1 Candidatus Magnospira bakii clone BM09 prokMSA_id:23993 AF087060.1 Candidatus Magnospira bakii clone BM6 prokMSA_id:50421 AF087092.1 Candidatus Magnospira bakii clone BM18 2.6.4.1.4.3 sf_5 7 seqs 2.6.4.1.4.3.5417 OTU 7 seqs prokMSA_id:52540 AJ318106.1 Waste-gas biofilter clone BIai2 prokMSA_id:59356 AF502209.1 EBPR sludge lab scale clone HP1A28 prokMSA_id:68865 AJ318166.1 Waste-gas biofilter clone BIrii20 prokMSA_id:81414 AY218602.1 penguin droppings sediments clone KD3-117 prokMSA_id:81927 AY218762.1 penguin droppings sediments clone KD6-48 prokMSA_id:82069 AY218564.1 penguin droppings sediments clone KD1-64 prokMSA_id:82223 AY211071.1 anaerobic VC-degrading enrichment clone VC5 bacterium 2.6.4.1.5 Sphingobacteriaceae 99 seqs 2.6.4.1.5.1 sf_1 99 seqs 2.6.4.1.5.1.5250 OTU 1 seq prokMSA_id:42382 AJ438173.2 Pedobacter saltans str. DSM 12145T 2.6.4.1.5.1.5274 OTU 1 seq prokMSA_id:17550 AF336356.1 Germany: Wulfbach river resurgence Southern Germany isolate str. Wuba47 2.6.4.1.5.1.5278 OTU 1 seq prokMSA_id:22691 AJ438176.1 Sphingobacterium faecium str. DSM 11690T 2.6.4.1.5.1.5279 OTU 1 seq prokMSA_id:19131 AJ318181.1 Waste-gas biofilter clone BIsii5 2.6.4.1.5.1.5337 OTU 1 seq prokMSA_id:37703 AJ296577.1 uranium mining mill tailing clone GR-Sh2-12 GR-Sh2-12 2.6.4.1.5.1.5402 OTU 1 seq prokMSA_id:71779 AY038764.1 epilithon clone TAF-A147 2.6.4.1.5.1.5405 OTU 2 seqs prokMSA_id:42106 AF188170.1 directly Pfiesteria-complex dinoflagellate s (CCMP 1827 1829) and Pfiesteria piscicida clone MC-2 prokMSA_id:48801 AF188172.1 directly Pfiesteria piscicida dinoflagellate clone KEppib35 2.6.4.1.5.1.5432 OTU 5 seqs prokMSA_id:46477 AJ438175.1 Flavobacterium mizutaii str. DSM 11724T prokMSA_id:109364 AY838480.1 fruiting body Pleurotus eryngii clone PE24 prokMSA_id:109366 AY838481.1 fruiting body Pleurotus eryngii clone PE25 prokMSA_id:109369 AY838484.1 fruiting body Pleurotus eryngii clone PE28 prokMSA_id:109378 AY838493.1 fruiting body Pleurotus eryngii clone PE37 2.6.4.1.5.1.5444 OTU 1 seq prokMSA_id:67493 AF493691.1 Sphingobacteriaceae str. EP211 2.6.4.1.5.1.5459 OTU 2 seqs prokMSA_id:78203 AB074637.1 synonym: CFB group clone APe2_8 prokMSA_id:93552 AJ551152.1 Pedobacter sp. An13 2.6.4.1.5.1.5492 OTU 1 seq prokMSA_id:68384 AF492000.1 Sphingobacterium sp. str. HC-6155 2.6.4.1.5.1.5513 OTU 2 seqs prokMSA_id:26222 AF329967.1 Pedobacter sp. str. LMG 10351 prokMSA_id:26343 AF385549.1 purified crevicular epithelial cells clone AZ123 2.6.4.1.5.1.5541 OTU 1 seq prokMSA_id:50974 AJ295641.1 uranium mill tailing clone KF-Gitt2-34 2.6.4.1.5.1.5582 OTU 1 seq prokMSA_id:40435 AF260710.1 Sphingobacterium sp. str. S3 2.6.4.1.5.1.5601 OTU 10 seqs prokMSA_id:2491 AB020205.1 Sphingobacterium multivorum str. OM-A8 prokMSA_id:36348 AB076874.1 Sphingobacterium sp. clone:OS1L-21 clone OS1L-21 sp. prokMSA_id:63191 AJ496037.1 Sphingobacterium sp. p11E prokMSA_id:77995 AB098594.1 Sphingobacterium sp. str. TUT1026 prokMSA_id:79272 AB100738.1 Sphingobacterium multivorum str. IAM14316 prokMSA_id:79519 AB100739.1 Sphingobacterium multivorum str. IAM15026 prokMSA_id:100180 AY556415.1 Sphingobacterium sp. str. SGE3 prokMSA_id:102055 AJ619044.1 Brewery bottling plant clone MTAC21 prokMSA_id:109393 AY838520.1 fruiting body Tricholoma matsutake clone TM11 prokMSA_id:111579 AY753171.1 Bacteroidetes endosymbiont Metaseiulus occidentalis clone pAJ234 2.6.4.1.5.1.5605 OTU 1 seq prokMSA_id:77459 AY167837.1 Sphingobacterium sp. str. SAFR-022 2.6.4.1.5.1.5613 OTU 1 seq prokMSA_id:2485 AF170741.1 Cytophagales str. QSSC5-1 2.6.4.1.5.1.5614 OTU 1 seq prokMSA_id:2486 AB022889.1 "Sphingobacterium" sp. MBIC4147 2.6.4.1.5.1.5648 OTU 3 seqs prokMSA_id:2490 M58779.2 Sphingobacterium thalpophilum prokMSA_id:2499 X67851.1 Sphingobacterium thalpophilum str. NCTC 11429 prokMSA_id:26308 AJ438177.1 Sphingobacterium thalpophilum str. DSM 11723T 2.6.4.1.5.1.5658 OTU 1 seq prokMSA_id:33633 AJ252650.1 Agricultural soil SC-I-70 () clone SC-I-70 2.6.4.1.5.1.5674 OTU 1 seq prokMSA_id:74255 AJ318176.1 Waste-gas biofilter clone BIsi7 2.6.4.1.5.1.5699 OTU 1 seq prokMSA_id:47809 AB033630.1 Pedobacter sp. KP-2 2.6.4.1.5.1.5747 OTU 3 seqs prokMSA_id:33665 AY039834.1 Flavobacterium sp. str. jshs26 prokMSA_id:37473 AJ252710.1 Potato plant root RC-III-9 () clone RC-III-9 prokMSA_id:47105 AF375835.1 Flavobacterium sp. str. C204B 2.6.4.1.5.1.5840 OTU 1 seq prokMSA_id:31489 AJ295473.1 rape rhizosphere clone wr0012 2.6.4.1.5.1.5858 OTU 1 seq prokMSA_id:24148 AF388029.1 Flavobacterium sp. str. 36 2.6.4.1.5.1.5878 OTU 3 seqs prokMSA_id:2484 AB020206.1 Sphingobacterium sp. str. OM-E81 prokMSA_id:29206 AJ438174.1 Pedobacter piscium str. DSM 11725T prokMSA_id:39088 AJ438170.1 Pedobacter cryoconitis str. A37 2.6.4.1.5.1.5913 OTU 31 seqs prokMSA_id:20232 AF329966.1 Pedobacter sp. str. LMG 10342 prokMSA_id:36195 AF329965.1 Pedobacter sp. str. LMG 10354 prokMSA_id:36521 AF329964.1 Pedobacter sp. str. LMG 9527 prokMSA_id:44075 AJ318151.1 Waste-gas biofilter clone BIji46 prokMSA_id:46956 X89912.1 DSM 9249 prokMSA_id:60340 AF534201.1 soil clone Glu58 prokMSA_id:67490 AF493692.1 Sphingobacteriaceae str. EP316 prokMSA_id:70559 AF385531.1 swab advanced noma lesion clone Av100 prokMSA_id:75974 AY162137.1 Flavobacterium sp. str. MTN11 prokMSA_id:81220 AY218724.1 penguin droppings sediments clone KD5-103 prokMSA_id:82880 AY250892.1 lichen-dominated Antarctic cryptoendolithic community clone TLT005 prokMSA_id:85313 AY250857.1 lichen-dominated Antarctic cryptoendolithic community clone BPU107 prokMSA_id:91125 AY337604.1 agricultural soil isolate str. LC9 prokMSA_id:91480 AY337599.2 agricultural soil isolate str. EC2 prokMSA_id:95052 AJ583425.1 Pedobacter sp. str. HHS22 prokMSA_id:96908 AJ575721.1 lake water clone SW35 prokMSA_id:98093 AJ575725.1 lake water clone SW66 prokMSA_id:99619 AY509377.1 freshwater clone LiUU-3-212 prokMSA_id:101784 AY569286.1 pink microbial mat clone YJQ-9 prokMSA_id:105842 AY569290.1 pink microbial mat clone YJQ-15 prokMSA_id:106204 AF408950.1 Pedobacter sp. str. Ellin108 prokMSA_id:106242 AY571816.1 Sphingobacterium sp. 44/35 prokMSA_id:106893 AF409002.1 Sphingobacteriaceae str. Ellin160 prokMSA_id:106933 AY599660.1 fungal ascocarp clone Cl-3-TB8-II prokMSA_id:106997 AY549545.1 symbiont prokMSA_id:107089 AY599661.1 Flavobacterium sp. str. TB4-10-II prokMSA_id:107240 AY599662.1 Pedobacter sp. str. TB2-14-II prokMSA_id:107385 AY599663.1 Pedobacter sp. str. TB4-9-II prokMSA_id:107529 AY599664.1 Pedobacter sp. str. TB2-12-II prokMSA_id:107674 AY599665.1 fungal ascocarp clone Cl-78-TB2-II prokMSA_id:108075 AJ786798.1 Pedobacter sp. R-21937 2.6.4.1.5.1.6136 OTU 1 seq prokMSA_id:31688 AJ318186.1 Waste-gas biofilter clone BIti3 2.6.4.1.5.1.6156 OTU 2 seqs prokMSA_id:21292 AF361199.1 mesoeutrophic reservoir clone 26 prokMSA_id:40351 AF361198.1 mesoeutrophic reservoir clone 17 2.6.4.1.5.1.6158 OTU 1 seq prokMSA_id:59539 AF538748.1 municipal wastewater treatment bioreactor isolate str. CAGY10 2.6.4.1.5.1.6174 OTU 1 seq prokMSA_id:43436 AJ318187.1 Waste-gas biofilter clone BIti35 2.6.4.1.5.1.6185 OTU 2 seqs prokMSA_id:66760 AJ459411.1 Sphingobacterium spiritivorum str. DSM 2582 prokMSA_id:112258 AJ878852.1 Sphingobacterium spiritivorum B1 2.6.4.1.5.1.6188 OTU 2 seqs prokMSA_id:46199 AY038766.1 epilithon clone TAF-A198 prokMSA_id:73110 AY038765.1 epilithon clone TAF-A194 2.6.4.1.5.1.6191 OTU 1 seq prokMSA_id:30987 AF324208.1 CFB group clone pA47 2.6.4.1.5.1.6222 OTU 1 seq prokMSA_id:74412 AY038770.1 epilithon clone TAF-A131 2.6.4.1.5.1.6250 OTU 1 seq prokMSA_id:56235 AB078046.1 Flexibacter canadensis str. IFO 15130 2.6.4.1.5.1.6272 OTU 6 seqs prokMSA_id:2481 M11657.1 Sphingobacterium heparinum prokMSA_id:28476 AY038610.1 lacustrine subsurface sediment clone GL184.1 prokMSA_id:39221 AY038609.1 lacustrine subsurface sediment clone GL182.29 prokMSA_id:40607 AJ438171.1 Pedobacter africanus str. DSM 12126T prokMSA_id:52839 AJ438172.1 Pedobacter heparinus str. DSM 2366T prokMSA_id:68958 AY038611.1 lacustrine subsurface sediment clone GL182.33 2.6.4.1.5.1.6273 OTU 1 seq prokMSA_id:52137 AJ252602.1 rhizosphere soil RSI-35 2.6.4.1.5.1.6314 OTU 1 seq prokMSA_id:43819 AJ318173.1 Waste-gas biofilter clone BIsi29 2.6.4.1.6 Unclassified 23 seqs 2.6.4.1.6.1 sf_10 1 seq 2.6.4.1.6.1.5383 OTU 1 seq prokMSA_id:2557 AF142842.1 clone BURTON-23 2.6.4.1.6.2 sf_3 14 seqs 2.6.4.1.6.2.5740 OTU 1 seq prokMSA_id:83725 AY250875.1 lichen-dominated Antarctic cryptoendolithic community clone FBP292 bacterium 2.6.4.1.6.2.5755 OTU 1 seq prokMSA_id:53303 AF328217.1 clone KS84 2.6.4.1.6.2.5799 OTU 1 seq prokMSA_id:60633 AF406540.1 bacterioplankton clone AEGEAN_150 2.6.4.1.6.2.5937 OTU 1 seq prokMSA_id:2593 U13160.1 2.6.4.1.6.2.6168 OTU 1 seq prokMSA_id:83335 AF534435.1 Toolik Lake main station at 3 m depth clone TLM11/TLMdgge04 2.6.4.1.6.2.6172 OTU 1 seq prokMSA_id:18147 AF424366.1 CFB group clone MERTZ_21CM_141 2.6.4.1.6.2.6231 OTU 1 seq prokMSA_id:82023 AY218561.1 penguin droppings sediments clone KD1-39 2.6.4.1.6.2.6247 OTU 4 seqs prokMSA_id:2483 AF070444.1 Tuber borchii symbiont b-17BO prokMSA_id:28059 AF233292.1 Tuber borchii symbiont b-Z43 prokMSA_id:51029 AF233294.1 Tuber borchii symbiont b-10RA prokMSA_id:51168 AF233293.1 Tuber borchii symbiont b-1BO 2.6.4.1.6.2.6298 OTU 1 seq prokMSA_id:33001 AF445661.1 travertine hot spring clone SM1C04 2.6.4.1.6.2.6303 OTU 1 seq prokMSA_id:85393 AF534434.1 Toolik Lake main station at 3 m depth clone TLM10/TLMdgge01 2.6.4.1.6.2.6305 OTU 1 seq prokMSA_id:39931 AF142910.1 clone ORGANIC-8 2.6.4.1.6.3 sf_4 1 seq 2.6.4.1.6.3.6030 OTU 1 seq prokMSA_id:27657 AF445648.1 travertine hot spring clone SM1A07 2.6.4.1.6.4 sf_5 2 seqs 2.6.4.1.6.4.6102 OTU 1 seq prokMSA_id:48679 AY038776.1 epilithon clone TAF-B81 2.6.4.1.6.4.6255 OTU 1 seq prokMSA_id:53218 AJ290037.1 Austria: Lake Gossenkoellesee clone GKS2-70 GKS2-70 2.6.4.1.6.5 sf_6 3 seqs 2.6.4.1.6.5.5439 OTU 3 seqs prokMSA_id:56341 AF507859.1 Mono Lake at depth 35 m station 6 July 2000 clone ML635J-40 bacterium prokMSA_id:79827 AF449769.1 CFB group clone ML1228M-4 prokMSA_id:80791 AF449768.1 CFB group clone ML1228J-9 2.6.4.1.6.6 sf_8 1 seq 2.6.4.1.6.6.5380 OTU 1 seq prokMSA_id:2554 AJ007870.1 cytophagales clone LD1 2.6.4.1.6.7 sf_9 1 seq 2.6.4.1.6.7.5558 OTU 1 seq prokMSA_id:42683 AF142893.1 clone EKHO-10 2.6.5 Unclassified 45 seqs 2.6.5.1 Unclassified 45 seqs 2.6.5.1.1 Unclassified 45 seqs 2.6.5.1.1.1 sf_1 1 seq 2.6.5.1.1.1.5745 OTU 1 seq prokMSA_id:18282 AJ408219.1 equine large intestine clone PL11 2.6.5.1.1.2 sf_2 1 seq 2.6.5.1.1.2.5302 OTU 1 seq prokMSA_id:2034 AF018445.1 rumen clone JW16 2.6.5.1.1.3 sf_3 3 seqs 2.6.5.1.1.3.5908 OTU 1 seq prokMSA_id:21326 AF447140.1 clone TDC-S1:8 2.6.5.1.1.3.5982 OTU 1 seq prokMSA_id:70027 Y13206.1 manganese-reducing toluene degrading enrichment clone II 2.6.5.1.1.3.6133 OTU 1 seq prokMSA_id:20499 AF447125.1 clone TDC-S5:22 2.6.5.1.1.4 sf_4 34 seqs 2.6.5.1.1.4.5298 OTU 1 seq prokMSA_id:29526 AF142975.1 clone TAYNAYA-27 2.6.5.1.1.4.5309 OTU 1 seq prokMSA_id:71827 AF469375.1 clone 33-PA63B98 2.6.5.1.1.4.5311 OTU 1 seq prokMSA_id:32923 AY038388.1 CFB group clone CD3D3 2.6.5.1.1.4.5313 OTU 1 seq prokMSA_id:28458 AF424337.1 CFB group clone MERTZ_2CM_101 2.6.5.1.1.4.5318 OTU 2 seqs prokMSA_id:63865 AF452592.1 CFB group clone ML110J-35 prokMSA_id:79883 AF449781.1 CFB group clone ML602M-17 2.6.5.1.1.4.5534 OTU 1 seq prokMSA_id:49571 AF424341.1 CFB group clone MERTZ_2CM_270 2.6.5.1.1.4.5583 OTU 1 seq prokMSA_id:2471 AF142849.1 clone BURTON-31 2.6.5.1.1.4.5616 OTU 1 seq prokMSA_id:2488 AF097805.1 sludge clone 49511 2.6.5.1.1.4.5633 OTU 1 seq prokMSA_id:2497 AF142861.1 clone BURTON-43 2.6.5.1.1.4.5637 OTU 1 seq prokMSA_id:77100 AY164378.1 hypersaline anoxic basin; brine interface Bannock Mediterranean Sea clone BLIB-51 2.6.5.1.1.4.5638 OTU 1 seq prokMSA_id:62694 AF507864.1 Mono Lake at depth 35 m station 6 July 2000 clone ML635J-44 bacterium 2.6.5.1.1.4.5649 OTU 1 seq prokMSA_id:22127 AF195425.1 July collection clone kpj60f 2.6.5.1.1.4.5678 OTU 1 seq prokMSA_id:36986 AF424333.1 clone MERTZ_2CM_1 2.6.5.1.1.4.5703 OTU 1 seq prokMSA_id:59793 AY133397.1 coastal Antarctic sediment clone BB2_87 2.6.5.1.1.4.5785 OTU 2 seqs prokMSA_id:62696 AF507862.1 Mono Lake at depth 35 m station 6 July 2000 clone ML635J-56 prokMSA_id:62698 AF507861.1 Mono Lake at depth 23 m station 6 July 2000 clone ML623J-20 2.6.5.1.1.4.5787 OTU 1 seq prokMSA_id:62699 AF507860.1 Mono Lake at depth 35 m station 6 July 2000 clone ML635J-1 bacterium 2.6.5.1.1.4.5810 OTU 1 seq prokMSA_id:1903 AF142860.1 clone BURTON-42 2.6.5.1.1.4.5814 OTU 1 seq prokMSA_id:1904 AF142825.1 clone BURTON-5 2.6.5.1.1.4.5815 OTU 1 seq prokMSA_id:41113 AF424345.1 CFB group clone MERTZ_2CM_347 2.6.5.1.1.4.5850 OTU 2 seqs prokMSA_id:1898 AF050541.1 contaminated aquifer clone WCHA1-01 prokMSA_id:26565 AF276461.1 PCB-contaminated St. Lawrence River sediment clone RFLP 92E 2.6.5.1.1.4.6038 OTU 1 seq prokMSA_id:46205 AF424367.1 CFB group clone MERTZ_21CM_238 2.6.5.1.1.4.6082 OTU 1 seq prokMSA_id:33969 AB056708.1 Japan:HokkaidoSizunaiHU Livestock Farm clone YT26 2.6.5.1.1.4.6101 OTU 1 seq prokMSA_id:26698 AF211291.1 hypersaline black mud clone CE54 2.6.5.1.1.4.6114 OTU 1 seq prokMSA_id:26752 AF424365.1 CFB group clone MERTZ_21CM_75 2.6.5.1.1.4.6175 OTU 1 seq prokMSA_id:1897 AF050540.1 contaminated aquifer clone WCHA1-14 2.6.5.1.1.4.6181 OTU 1 seq prokMSA_id:37588 AF424340.1 CFB group clone MERTZ_2CM_232 2.6.5.1.1.4.6190 OTU 1 seq prokMSA_id:41838 AF195427.1 July collection clone kpj11rc 2.6.5.1.1.4.6227 OTU 1 seq prokMSA_id:2002 AF142826.1 clone BURTON-6 2.6.5.1.1.4.6268 OTU 1 seq prokMSA_id:77910 AY171371.1 marine sediment clone s34 2.6.5.1.1.4.6289 OTU 1 seq prokMSA_id:32790 AF424352.1 CFB group clone MERTZ_0CM_182 2.6.5.1.1.4.6296 OTU 1 seq prokMSA_id:48628 AF195440.1 brown tide algal CCMP1784 clone kpc113rc 2.6.5.1.1.5 sf_5 2 seqs 2.6.5.1.1.5.5786 OTU 2 seqs prokMSA_id:58613 AB078074.1 Flexibacter tractuosus str. IFO 16037 prokMSA_id:58614 AB078075.1 Flexibacter tractuosus str. IFO 16038 2.6.5.1.1.6 sf_6 1 seq 2.6.5.1.1.6.5655 OTU 1 seq prokMSA_id:26841 AF188175.1 directly Pfiesteria piscicida dinoflagellate clone KEppib45 2.6.5.1.1.7 sf_7 1 seq 2.6.5.1.1.7.8794 OTU 1 seq prokMSA_id:7781 AF142853.1 clone BURTON-35 2.6.5.1.1.8 sf_8 1 seq 2.6.5.1.1.8.5826 OTU 1 seq prokMSA_id:2627 AF013555.2 volcanic cinder field Sunset Crater Arizona clone 2.6.5.1.1.9 sf_9 1 seq 2.6.5.1.1.9.5519 OTU 1 seq prokMSA_id:65554 AY095412.1 yard-trimming-compost clone S-44 2.7 BRC1 3 seqs 2.7.1 Unclassified 3 seqs 2.7.1.1 Unclassified 3 seqs 2.7.1.1.1 Unclassified 3 seqs 2.7.1.1.1.1 sf_1 2 seqs 2.7.1.1.1.1.5051 OTU 1 seq prokMSA_id:37044 AJ390454.1 soil clone PBS-III-24 2.7.1.1.1.1.5143 OTU 1 seq prokMSA_id:19077 AJ390438.1 soil clone PBS-II-1 2.7.1.1.1.2 sf_2 1 seq 2.7.1.1.1.2.118 OTU 1 seq prokMSA_id:82144 AY218548.1 penguin droppings sediments clone KD1-1 2.8 Caldithrix 2 seqs 2.8.1 Unclassified 2 seqs 2.8.1.1 Caldithrales 2 seqs 2.8.1.1.1 Caldithraceae 2 seqs 2.8.1.1.1.1 sf_1 1 seq 2.8.1.1.1.1.2384 OTU 1 seq prokMSA_id:26077 AF286032.1 saltmarsh clone LCP-89 2.8.1.1.1.2 sf_2 1 seq 2.8.1.1.1.2.91 OTU 1 seq prokMSA_id:53652 AF323775.1 benzoate-degrading consortium clone BA059 2.9 Chlamydiae 81 seqs 2.9.1 Chlamydiae 81 seqs 2.9.1.1 Chlamydiales 81 seqs 2.9.1.1.1 Chlamydiaceae 42 seqs 2.9.1.1.1.1 sf_1 42 seqs 2.9.1.1.1.1.4685 OTU 1 seq prokMSA_id:2952 U68426.2 Chlamydophila pneumoniae str. N16 2.9.1.1.1.1.4686 OTU 5 seqs prokMSA_id:3024 U73110.2 Chlamydia suis str. S45 prokMSA_id:3025 U68420.2 Chlamydia suis str. R22 prokMSA_id:103253 AY661794.1 Chlamydia suis str. 13VII prokMSA_id:103405 AY661795.1 Chlamydia suis str. 14V prokMSA_id:103676 AY661797.1 Chlamydia suis str. 32XII 2.9.1.1.1.1.4820 OTU 7 seqs prokMSA_id:2948 L06108.1 Chlamydophila pneumoniae prokMSA_id:3006 Z49873.1 Chlamydia pneumoniae prokMSA_id:3007 AE001668.1 Chlamydophila pneumoniae str. CWL029 prokMSA_id:3008 Z49874.1 Chlamydophila pneumoniae prokMSA_id:49993 NC_000922.1 Chlamydophila pneumoniae str. CWL029 prokMSA_id:90574 AE017160.1 Chlamydophila pneumoniae str. TW-183 prokMSA_id:112346 NC_002179.2 Chlamydophila pneumoniae AR39 2.9.1.1.1.1.4822 OTU 17 seqs prokMSA_id:2955 U68443.2 Chlamydia trachomatis str. L2/434/BU; ATCC VR-902B prokMSA_id:2956 D85722.1 Chlamydia trachomatis str. E/UW-5/Cx prokMSA_id:3009 D89067.1 Chlamydia trachomatis str. HAR-13 prokMSA_id:3010 D88316.1 Chlamydia trachomatis prokMSA_id:3011 D85719.1 Chlamydia trachomatis str. B/TW-5/OT prokMSA_id:3012 D85720.1 Chlamydia trachomatis str. C/TW-3/OT prokMSA_id:3013 D85721.1 Chlamydia trachomatis str. D/TW-3/CX prokMSA_id:3014 AE001345.1 Chlamydia trachomatis str. D/UW-3/CX prokMSA_id:3015 AE001347.1 Chlamydia trachomatis str. D/UW-3/CX prokMSA_id:3041 D85718.1 Chlamydia muridarum prokMSA_id:3042 U68437.2 Chlamydia muridarum str. SFPD prokMSA_id:19114 E17345.1 Chlamydia trachomatis MoPn/Weiss-Nigg prokMSA_id:49665 E17344.1 Chlamydia trachomatis A/Har-13T prokMSA_id:50790 NC_000117.1 Chlamydia trachomatis D/UW-3/CX prokMSA_id:83720 AE002280.2 Chlamydia muridarum prokMSA_id:84873 NC_002620.2 Chlamydia muridarum prokMSA_id:85637 AE002279.2 Chlamydia muridarum 2.9.1.1.1.1.4826 OTU 12 seqs prokMSA_id:3027 D88317.1 Chlamydophila pecorum str. E58 prokMSA_id:3028 U73782.1 Chlamydophila pecorum str. BE prokMSA_id:3029 U73785.1 Chlamydophila pecorum str. Bo/E8 prokMSA_id:3030 D85714.1 Chlamydophila pecorum str. Bo/Shizuoka prokMSA_id:3031 D85715.1 Chlamydophila pecorum str. Bo/Maeda prokMSA_id:3032 D85716.1 Chlamydophila pecorum prokMSA_id:3033 D85717.1 Chlamydophila pecorum str. Koala type II prokMSA_id:3034 AB001774.1 Chlamydophila pecorum str. Bo-1485 prokMSA_id:3035 AB001775.1 Chlamydophila pecorum str. Bo-Maeda prokMSA_id:3036 AB001776.1 Chlamydophila pecorum str. Bo-Yokohama prokMSA_id:3037 AB001777.1 Chlamydophila pecorum prokMSA_id:36991 E17343.1 Chlamydia pecorum Bo/Maeda 2.9.1.1.2 Parachlamydiaceae 29 seqs 2.9.1.1.2.1 sf_1 29 seqs 2.9.1.1.2.1.4696 OTU 2 seqs prokMSA_id:2930 AF098330.1 endosymbiont of Acanthamoeba sp. TUME1 prokMSA_id:2933 AF083616.1 endosymbiont of Acanthamoeba sp. UWC22 2.9.1.1.2.1.4741 OTU 1 seq prokMSA_id:25273 AF364568.1 Chlamydiales clone P-6 2.9.1.1.2.1.4758 OTU 1 seq prokMSA_id:24341 AF177275.1 Neochlamydia hartmannellae 2.9.1.1.2.1.4788 OTU 1 seq prokMSA_id:2924 AF142864.1 clone BURTON-46 2.9.1.1.2.1.4790 OTU 1 seq prokMSA_id:2925 U68599.1 Amazon clone M12 2.9.1.1.2.1.4823 OTU 2 seqs prokMSA_id:2920 Y07556.1 Parachlamydia acanthamoebae str. Bn9 prokMSA_id:49792 AF366365.1 Parachlamydia sp. Hall's coccus 2.9.1.1.2.1.4834 OTU 12 seqs prokMSA_id:22160 AF364577.1 Chlamydiales clone P-11 prokMSA_id:24629 AF364562.1 Chlamydiales clone P-13 prokMSA_id:25769 AF364571.1 Chlamydiales clone P-17 prokMSA_id:26915 AF364573.1 Chlamydiales clone P-19 prokMSA_id:30860 AF364567.1 Chlamydiales clone P-15 prokMSA_id:31998 AF364574.1 Chlamydiales clone P-8 prokMSA_id:33726 AF364566.1 Chlamydiales clone P-14 prokMSA_id:34118 AF364576.1 Chlamydiales clone P-10 prokMSA_id:40042 AF364570.1 Chlamydiales clone P-16 prokMSA_id:43225 AF364560.1 Chlamydiales clone P-1 prokMSA_id:43574 AF364572.1 Chlamydiales clone P-18 prokMSA_id:50356 AF364578.1 Chlamydiales clone P-12 2.9.1.1.2.1.4836 OTU 3 seqs prokMSA_id:18839 AF364569.1 Chlamydiales clone P-7 prokMSA_id:38880 AF364564.1 Chlamydiales clone P-4 prokMSA_id:44515 AF364575.1 Chlamydiales clone P-9 2.9.1.1.2.1.4886 OTU 1 seq prokMSA_id:23644 AF308693.1 clinical clone corvenA4 2.9.1.1.2.1.4896 OTU 1 seq prokMSA_id:2931 AF083614.1 endosymbiont of Acanthamoeba sp. UWE1 2.9.1.1.2.1.4898 OTU 1 seq prokMSA_id:2932 AF083615.1 endosymbiont of Acanthamoeba sp. UWE25 2.9.1.1.2.1.4924 OTU 2 seqs prokMSA_id:45999 AF364563.1 Chlamydiales clone P-3 prokMSA_id:51801 AF364565.1 Chlamydiales clone P-5 2.9.1.1.2.1.4964 OTU 1 seq prokMSA_id:67842 AY082465.1 neutral pH mine biofilm clone 44a-B1-34 2.9.1.1.3 Simkaniaceae 5 seqs 2.9.1.1.3.1 sf_1 5 seqs 2.9.1.1.3.1.4663 OTU 1 seq prokMSA_id:2935 U68460.2 Simkania negevensis 2.9.1.1.3.1.4702 OTU 1 seq prokMSA_id:83246 AY223862.1 Candidatus Rhabdochlamydia porcellionis clone RKPsHep porcellionis 2.9.1.1.3.1.4723 OTU 1 seq prokMSA_id:33207 AF448723.2 freshwater clone cvE9 2.9.1.1.3.1.4743 OTU 2 seqs prokMSA_id:17182 AF400484.1 Bemisia tabaci biotype Jatropha symbiont prokMSA_id:89521 AY140910.1 Fritschea bemisiae 2.9.1.1.4 Unclassified 3 seqs 2.9.1.1.4.1 sf_1 3 seqs 2.9.1.1.4.1.4787 OTU 1 seq prokMSA_id:2923 AF142972.1 clone TAYNAYA-24 2.9.1.1.4.1.4926 OTU 1 seq prokMSA_id:30011 AF424515.1 Chlamydiales clone MERTZ_2CM_173 2.9.1.1.4.1.4946 OTU 1 seq prokMSA_id:31309 AF448722.2 freshwater clone cvE6 2.9.1.1.5 Waddliaceae 2 seqs 2.9.1.1.5.1 sf_1 2 seqs 2.9.1.1.5.1.4909 OTU 1 seq prokMSA_id:2936 AF042496.1 Waddlia chondrophila 2.9.1.1.5.1.4936 OTU 1 seq prokMSA_id:54620 AF346001.1 Waddlia chondrophila