BLASTP 2.0.8 [Jan-05-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= YDL043C PRP11, Chr IV from 375676-376476, reverse complement (266 letters) Database: nr 361,503 sequences; 110,384,460 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|2498800|sp|Q07350|PR11_YEAST PRE-MRNA SPLICING FACTOR PRP11 ... 467 e-131 gi|1279673|emb|CAA96446| (Z71781) RNA11 [Saccharomyces cerevisiae] 460 e-129 gi|3289979 (AC005263) SP62_HUMAN; SAP 62; SF3A66 [Homo sapiens] 68 5e-11 gi|2498942|sp|Q62203|SP62_MOUSE SPLICEOSOME ASSOCIATED PROTEIN ... 68 5e-11 gi|2498941|sp|Q15428|SP62_HUMAN SPLICEOSOME ASSOCIATED PROTEIN ... 68 7e-11 gi|3875770|emb|CAA92593| (Z68297) Similarity to Human splicosom... 65 4e-10 gi|3298548 (AC004681) putative spliceosomal protein [Arabidopsi... 57 2e-07 >gi|2498800|sp|Q07350|PR11_YEAST PRE-MRNA SPLICING FACTOR PRP11 >gi|2133073|pir||S67576 PRP11 protein - yeast (Saccharomyces cerevisiae) >gi|1431030|emb|CAA98602| (Z74091) ORF YDL043c [Saccharomyces cerevisiae] >gi|226088|prf||1410273A RNA11 gene [Saccharomyces cerevisiae] Length = 266 Score = 467 bits (1188), Expect = e-131 Identities = 233/252 (92%), Positives = 233/252 (92%) Query: 1 MNYLEXXXXXXXXXXIASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYK 60 MNYLE IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYK Sbjct: 1 MNYLEGVGSKKGGGGIASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYK 60 Query: 61 NHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQ 120 NHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQ Sbjct: 61 NHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQ 120 Query: 121 KIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLI 180 KIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLI Sbjct: 121 KIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLI 180 Query: 181 RIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSEXXXXXXXXXGVDELNKKC 240 RIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSE GVDELNKKC Sbjct: 181 RIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKC 240 Query: 241 TFWDAISKLYYV 252 TFWDAISKLYYV Sbjct: 241 TFWDAISKLYYV 252 >gi|1279673|emb|CAA96446| (Z71781) RNA11 [Saccharomyces cerevisiae] Length = 263 Score = 460 bits (1170), Expect = e-129 Identities = 228/237 (96%), Positives = 228/237 (96%) Query: 16 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH Sbjct: 13 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 72 Query: 76 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI 135 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI Sbjct: 73 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI 132 Query: 136 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKG 195 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKG Sbjct: 133 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKG 192 Query: 196 KKFLVIAYEPFENIAIELPPNEILFSEXXXXXXXXXGVDELNKKCTFWDAISKLYYV 252 KKFLVIAYEPFENIAIELPPNEILFSE GVDELNKKCTFWDAISKLYYV Sbjct: 193 KKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYV 249 >gi|3289979 (AC005263) SP62_HUMAN; SAP 62; SF3A66 [Homo sapiens] Length = 464 Score = 68.3 bits (164), Expect = 5e-11 Identities = 57/204 (27%), Positives = 90/204 (43%), Gaps = 32/204 (15%) Query: 16 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75 +AS S+ N RR+ + L + T KD PY KNH G CKLC T+H Sbjct: 16 VASSSESNRDRRERLRQLALE------TIDINKD------PYFMKNHLGSYECKLCLTLH 63 Query: 76 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI 135 + S H GKKH N+ RR K + + ++ +E K+ +K Sbjct: 64 NNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPA-------PEKVKVEVKKFVKIGR-- 114 Query: 136 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELS-DTKQK 194 P K+ ++ + G L Q++Y E+ E + P R +S E + + Sbjct: 115 PGYKVTKQRDSEMGQQSLLFQIDY-PEIAEG---------IMPRHRFMSAYEQRIEPPDR 164 Query: 195 GKKFLVIAYEPFENIAIELPPNEI 218 ++L++A EP+E IA ++P EI Sbjct: 165 RWQYLLMAAEPYETIAFKVPSREI 188 >gi|2498942|sp|Q62203|SP62_MOUSE SPLICEOSOME ASSOCIATED PROTEIN 62 (SAP 62) (SF3A66) >gi|633251|emb|CAA58703| (X83733) spliceosome SAP62 [Mus musculus] Length = 485 Score = 68.3 bits (164), Expect = 5e-11 Identities = 57/204 (27%), Positives = 90/204 (43%), Gaps = 32/204 (15%) Query: 16 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75 +AS S+ N RR+ + L + T KD PY KNH G CKLC T+H Sbjct: 16 VASSSESNRDRRERLRQLALE------TIDINKD------PYFMKNHLGSYECKLCLTLH 63 Query: 76 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI 135 + S H GKKH N+ RR K + + ++ +E K+ +K Sbjct: 64 NNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPA-------PEKVKVEVKKFVKIGR-- 114 Query: 136 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELS-DTKQK 194 P K+ ++ + G L Q++Y E+ E + P R +S E + + Sbjct: 115 PGYKVTKQRDTEMGQQSLLFQIDY-PEIAEG---------IMPRHRFMSAYEQRIEPPDR 164 Query: 195 GKKFLVIAYEPFENIAIELPPNEI 218 ++L++A EP+E IA ++P EI Sbjct: 165 RWQYLLMAAEPYETIAFKVPSREI 188 >gi|2498941|sp|Q15428|SP62_HUMAN SPLICEOSOME ASSOCIATED PROTEIN 62 (SAP 62) (SF3A66) >gi|627605|pir||A47655 spliceosome-associated protein SAP 62 - human >gi|409219 (L21990) spiceosomal protein [Homo sapiens] Length = 464 Score = 67.9 bits (163), Expect = 7e-11 Identities = 57/204 (27%), Positives = 90/204 (43%), Gaps = 32/204 (15%) Query: 16 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75 +AS S+ N RR+ + L + T KD PY KNH G CKLC T+H Sbjct: 16 VASSSESNRDRREPLRQLALE------TIDINKD------PYFMKNHLGSYECKLCLTLH 63 Query: 76 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI 135 + S H GKKH N+ RR K + + ++ +E K+ +K Sbjct: 64 NNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPA-------PEKVKVEVKKFVKIGR-- 114 Query: 136 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELS-DTKQK 194 P K+ ++ + G L Q++Y E+ E + P R +S E + + Sbjct: 115 PGYKVTKQRDSEMGQQSLLFQIDY-PEIAEG---------IMPRHRFMSAYEQRIEPPDR 164 Query: 195 GKKFLVIAYEPFENIAIELPPNEI 218 ++L++A EP+E IA ++P EI Sbjct: 165 RWQYLLMAAEPYETIAFKVPSREI 188 >gi|3875770|emb|CAA92593| (Z68297) Similarity to Human splicosome-associated protein SAP62 (PIR Acc. No. A47655); cDNA EST EMBL:C08866 comes from this gene; cDNA EST yk247a3.3 comes from this gene; cDNA EST yk247a3.5 comes from this gene; cDNA EST yk371... Length = 610 Score = 65.2 bits (156), Expect = 4e-10 Identities = 61/240 (25%), Positives = 99/240 (40%), Gaps = 51/240 (21%) Query: 16 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75 +AS + + RR+ + L + T +KD PY +NH G CKLC T+H Sbjct: 16 VASAADAGVDRRERLRQLALE------TIDLQKD------PYFMRNHIGTYECKLCLTLH 63 Query: 76 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDF--RQQQKIIEAKQSLKNNG 133 + S H GKKH N+ RR + Q+ F Q+ +E K+ +K Sbjct: 64 NNEGSYLAHTQGKKHQANLARR---------AAKEQSEQPFLPAPQKAAVETKKFVKIGR 114 Query: 134 TIPVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELS-DTK 192 P K+ ++P G L Q++Y E+ + + P R +S E Sbjct: 115 --PGYKVTKERDPGAGQQALLFQIDY-PEIADG---------IAPRHRFMSAYEQKIQPP 162 Query: 193 QKGKKFLVIAYEPFENIAIELPPNEILFSEXXXXXXXXXGVDELNKKCTFWDAISKLYYV 252 K ++L+ A EP+E I ++P E VD+ K T W+ +K +++ Sbjct: 163 DKRWQYLLFAAEPYETIGFKIPSRE---------------VDKSEKFWTMWNKDTKQFFL 207 >gi|3298548 (AC004681) putative spliceosomal protein [Arabidopsis thaliana] Length = 275 Score = 56.6 bits (134), Expect = 2e-07 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%) Query: 55 NPYIYKNHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTH 114 +PY +NH G CKLC T+H + + H GK+H N+ +R Sbjct: 41 DPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAA--------------- 85 Query: 115 DFRQQQKIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKENSV------ 168 R+ + Q LK N ++ + K G G + Y E+++ S+ Sbjct: 86 --REAKDAPTKPQPLKRN-------VSVRRTVKIGRPGYRVTKQYDPELQQRSLLFQIEY 136 Query: 169 -DSDDKAKVPPLIRIVSGLELS-DTKQKGKKFLVIAYEPFENIAIELPPNEI 218 + +D K P R +S E K ++L+ A EP+E IA ++P E+ Sbjct: 137 PEIEDNIK--PRHRFMSSYEQKVQPYDKSYQYLLFAAEPYEIIAFKVPSTEV 186 Database: nr Posted date: Mar 13, 1999 7:20 PM Number of letters in database: 110,384,460 Number of sequences in database: 361,503 Lambda K H 0.313 0.132 0.374 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50178902 Number of Sequences: 361503 Number of extensions: 1948558 Number of successful extensions: 3688 Number of sequences better than 1.0e-03: 7 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 3682 Number of HSP's gapped (non-prelim): 7 length of query: 266 length of database: 110384460 effective HSP length: 57 effective length of query: 209 effective length of database: 89778789 effective search space: 18763766901 effective search space used: 18763766901 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 42 (21.9 bits) S2: 102 (44.1 bits)