Reference SNP(refSNP) Cluster Report: rs4726462

Reference SNP(refSNP) Cluster Report: rs4726462

refSNP ID: rs4726462
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	111/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	G/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NM_001061.2:c.337-3323T>G
NM_030984.1:c.337-3323T>G
NT_007914.14:g.224219T>G

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss6514063 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4726462 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss6514063	WI_SSAHASNP\|NT_007914.10_190974		fwd/B	G/T	cttgaggctaggagttcaagaccagcctgg	caacatagtgagacaccatctctacaaaaa	02/12/03	10/10/03	111	Genomic			unknown

Fasta sequence (Legend)

 CTGACAACTA TTTCTTAAAT GACATGATTC AATGTCCCCT TACCATCTGA CTGCTCTTTT
 GAAATCATCA ATTTCCTCTT ATTGTGGGAC ATCTATAAAC AAAAAGAggc caggcacagt
 ggctcatgcc tgtaatccca gcactttggg agaccaaggt gggaggatct cttgaggcta
 ggagttcaag accagcctgg
 K
 caacatagtg agacaccatc tctacaaaaa aacttcaaaa ttagctgaca tggtggcatg
 tacctctagt cccagctact caggagactg agagggtagg atcgcttgag tccagaagtt
 tggggttcca gtgagccacg atcacaccaa tgcactaccg cctgggtgac agagcaagac
 cctgtttcaa aaaaaataaa

GeneView

GeneView via analysis of contig annotation: TBXAS1 thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_007914->NM_001061

function

reference

NT_007914->NM_030984

function

HuRef

NW_001839073->NM_001061

function

HuRef

NW_001839073->NM_030984

function

Celera

NW_923640->NM_001061

function

Celera

NW_923640->NM_030984

function

CRA_TCAGchr7v2

NT_079596->NM_001061

function

CRA_TCAGchr7v2

NT_079596->NM_030984

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_007914->NM_001061->NP_001052	224219	forward	intron

reference	NT_007914->NM_030984->NP_112246	224219	forward	intron

HuRef	NW_001839073->NM_001061->NP_001052	226978	forward	intron

HuRef	NW_001839073->NM_030984->NP_112246	226978	forward	intron

Celera	NW_923640->NM_001061->NP_001052	37113453	forward	intron

Celera	NW_923640->NM_030984->NP_112246	37113453	forward	intron

CRA_TCAGchr7v2	NT_079596->NM_001061->NP_001052	38997177	forward	intron

CRA_TCAGchr7v2	NT_079596->NM_030984->NP_112246	38997177	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs4726462 maps exactly once on NCBI human chromosome 7

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
7	NW_001839073.1	226978	133926525	plus	T	alt_assembly_8	HuRef	HuRef	view	200
7	NW_923640.1	37113453	134354702	plus	T	alt_assembly_1	Celera	Celera	view	200
7	NT_079596.2	38997177	138961609	plus	T	alt_assembly_2	CRA_TCAGchr7v2	CRA_TCAGchr7v2	view	200
7	NT_007914.14	224219	139279136	plus	T	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
10

dbSNP Blast Analysis
GenBank HTGS Finished:
AC004914.1 NC_000007.12

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .