Prostate data (Specificity index cutoff 3)

Name

Serial Number

Number of ESTs

Number of Inserts

Number of zeroes

Prostate libraries

Non-Prostate hits

Putative id or est names

 

1

651

589

120

no (7) ca(11)

pancr.tu bonma.xx breas.tu

GLANDULAR KALLIKREIN 2

PROSTATE SPECIFIC ANTIGEN

 

2

367

339

3

no (7)

ca (8)

testi.xx bonma.xx

prostate-secreted seminal plasma protein (HT:3547)

 

3

103

101

17

no (3)

kidne.ca colon.ca

gb:M81651_rna1 SEMENOGELIN II PRECURSOR

C15

4

26

26

26

ca

-

ni72d09 ni72e05 ni62e03 ni67h04 ni75f09 ni79d06 nt93f03 nt89d09 nz45f03 nz46b09 nz47b10 nz43h11 nw84g08 nw85b12 nw86b05 nz52e11 ny44a09 ny41e06 ny41h05 ny42a06 nw72b04 nw79c04 nw75a06 nw81a01 nw77b10 nw83d05 (Crisp-3)

C1

5

16

10

16

no(2) tu

-

nc16a06 nc19c11 nc13d11 nf29f09 nv14g08 nc45d06 nc47f03 nc46c10 nt57e01 np08f05

 

6

15

14

1

no(5)

ca(3)

colon.ca colon.ca colon.xx pancr.xx

nc08h07 nf32a08 nc35e08 np04c09 np04h02 nu91g06 ns93g05 ny47g11 nj05e01 nj52h03 nj62g06 nj55d06 nj97a07 nj84d05

C3

7

12

9

8

ca(2)

livsp.ft brain.in breas.no

WP:F58E6.3 CE06018 EGF-LIKE DOMAIN ;

This cluster has ligation or bookeeping errors

PAGE

8

12

10

0

no(2)

ca(2)

mixed placenta(4) liverspleen.ft

nc27g01 nf19h11 nh24a11 nh24e10 nc33g02 nc79f08 nr35f03 nh32c06 nt72b09 nt78f01

 

9

10

6

7

no

tonsil colon.tu

REP gb:J04809_rna1 ADENYLATE KINASE ISOENZYME 1

 

10

10

8

1

no(3) ca(2)

liverspleen.ft

muscle.no brain.xx

REP EST containing Alu repeat

C2

11

9

6

9

no tu

-

nc14b02 nc04c08 nc06e12 nc71b05 nc71b06 nt71d07

 

12

9

6

6

tu

ovary.tu

REP nc49e12 nc50a10 nc50a11 nt62h03 nt78f11 nt78h02

 

13

9

9

0

no(2) ca(2)

bonma.xx lung.ca lung.xx(2)

gb:U01101 CLARA CELL PHOSPHOLIPID-BINDING PROTEIN PRECURSOR

 

14

8

8

8

xx

-

ny61h10 ny50b02 ny50c10 ny50h02 ny51f09 ny57a05 ny60e04 ny60f08

 

15

8

7

1

ca(4) no

bonma.xx

REP Contains ESTs with more than 300 hits

 

16

7

7

7

ca(4) no

-

REP gb:M87338 ACTIVATOR 1 40 KD SUBUNIT (??)

C9

17

7

5

7

tu

-

REP nc45b05 nc46b12 nc47g07 nc50e02 nc50e01

 

18

7

5

0

tu

thyro.xx tonsi.xx ovary.tu

gb:M85165 SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1B (HUMAN);

C10

19

6

4

6

no

-

REP nc21c02 nc21g08 nc25h05 nc27d09

C4

20

6

4

6

no

-

nc09h02 nc27e02 nc11c01 nc11g03

C5

21

6

3

6

no

-

nc09b07 nc26f02 nc19e02

C13

22

6

4

6

no(2) ca

-

REP nh22c07 nc35f10 nc78a06 nj45e02 lipoxygenase

 

23

6

4

6

ca(2)

-

no99f10 nr19c01 nc44b01 nc44b11

C11

24

6

3

6

tu

-

nc45b06 nc47c02 nc47e09

 

25

6

4

6

tu

-

gb:M23263 ANDROGEN RECEPTOR (HUMAN);

 

26

6

6

6

tu

-

np12a06 np11a06 np11c06 np07g09 np11g06 np08g04

 

27

6

6

4

tu

lung.xx

P40486 HYPOTHETICAL 59.2 KD PROTEIN (yiest)

 

28

6

6

0

tg

heart.ft(2) foreskin.me poole.xx

SNAP-23 protein

 

29

6

6

0

no(2) ca(2)

brain.tg muscl.ca

gb:K01911 NEUROPEPTIDE Y PRECURSOR

 

30

6

5

0

ca(3) no

colon.ca breas.no

SW:P29775 DNA-BINDING PROTEIN D-ETS-4 ;

 

31

6

5

0

ca(2) no(2)

bone.sa

SW:P31271 HOMEOTIC PROTEIN HOX-A13 ;

 

32

6

5

0

ca tu

brain.tu total.ft place.xx place.in

np78g07 nc48e12 ns90g02 nt81c04 nt79g04

 

33

6

3

0

tu

lung.xx livsp.ft

nc44a10 nc44f02 nc50d07

 

34

6

6

0

xx ca

ovary.tu breast.no placenta

REP ny51a06 ny51c06 ny55a05 ny59b12 ny51e10 ny61d02

 

35

5

3

5

no

-

REP gb:M34309 ERBB-3 RECEPTOR PROTEIN-TYROSINE KINASE

 

36

5

4

5

no tu ca

-

nc22g03 nf31g01 ng89f07 np08g02

C12

37

5

3

5

no

-

REP nc09b11 nc26c10 nc17g01

 

38

5

5

5

no ca ca no

-

REP nf23b02 nk57a10 nk52c07 no34h04 no47a09

C14

39

5

3

5

ca no

-

nc74f10 nc75f10 nj94a02

 

40

5

3

5

ca

-

TR:G531106 G531106 SYT. ;

C8

41

5

3

5

tu

-

nc47a06 nc47d03 nc51c05

 

42

5

5

5

xx

-

REP ny50a09 ny52d08 ny60c04 ny52f08 ny52h08

 

43

5

5

5

xx

-

ny50a11 ny54b05 ny55h12 ny57b09 ny61b10

 

44

5

5

5

xx

-

ny50a12 ny54e08 ny53b04 ny56b11 ny56b12

 

45

5

5

5

xx

-

ny59d06 ny59f08 ny59h08 ny53b09 ny60h03

 

46

5

5

3

tu

lung.ca lung.xx

REP nt68a11 ns89c03 nt75e07 nt74a07 nt83g03

 

47

5

5

2

ca tu ca

brain.xx colon.ca muscle.ca

REP nf35b09 nt69e12 nt70d07 nt85b08 nt88g10

 

48

5

5

2

xx

tonsil.xx

ny61g08 ny50h11 ny59c10 ny59c12 ny52f04

 

49

5

5

1

no no no ca

placenta.in bone.sa colon.tu

nc62c04 nc62c05 nq76g01 nj03a04 no33f03

 

50

5

4

0

ca

foreskin.me

nc34g10 nc73a11 nc73e11 nr24c11

 

51

5

5

0

ca tu ca

spleen.xx adipo.tg muscl.no

SW:PLZF_HUMAN Q05516 ZINC FINGER PROTEIN PLZF ;

 

52

5

4

0

ca

breast.no(2) livsp.ft

nc76b03 nc76b02 nc78a03 nc78c03

C7

53

5

4

0

ca tu

testis.xx

ng90g10 nc44h02 nc45e06 nc51d11

 

54

5

5

0

tu

heart.ft mixed.xx

nt58g01 nt70e03 ns90g11 nt60b12 nt64c03

 

55

5

5

0

tu xx ca no

muscl.ca ovary.no liver.ca

REP nt59c05 nt66e05 nj86a01 nk57a05 ny61b01

 

56

5

5

0

tu

liverspleen.ft

REP nv95h08 nv93b07 nv93d10 nv99e12 nv97b04

 

 



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Abstract

Bibliography

Molecular Modeling Section
Laboratory of Molecular Biology
National Cancer Institute

National Institutes of Health