BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= PGN_0554 hypothetical protein
(189 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34541213|ref|NP_905692.1| hypothetical protein PG1555 [P... 384 e-105
gi|153806139|ref|ZP_01958807.1| hypothetical protein BACCAC... 154 4e-36
gi|29345902|ref|NP_809405.1| integral membrane protein [Bac... 152 1e-35
gi|167764708|ref|ZP_02436829.1| hypothetical protein BACSTE... 152 1e-35
gi|150004735|ref|YP_001299479.1| integral membrane protein ... 148 2e-34
gi|53713983|ref|YP_099975.1| integral membrane protein [Bac... 146 6e-34
gi|160890477|ref|ZP_02071480.1| hypothetical protein BACUNI... 129 1e-28
gi|53713807|ref|YP_099799.1| integral membrane protein [Bac... 128 2e-28
gi|160885822|ref|ZP_02066825.1| hypothetical protein BACOVA... 126 9e-28
gi|167753616|ref|ZP_02425743.1| hypothetical protein ALIPUT... 116 7e-25
gi|73668343|ref|YP_304358.1| integral membrane protein [Met... 112 1e-23
gi|20093212|ref|NP_619287.1| MotA/TolQ/ExbB proton channel ... 109 1e-22
gi|150386668|ref|ZP_01925189.1| MotA/TolQ/ExbB proton chann... 105 2e-21
gi|20093420|ref|NP_619495.1| MotA/TolQ/ExbB proton channel ... 101 3e-20
gi|20089242|ref|NP_615317.1| MotA/TolQ/ExbB proton channel ... 101 3e-20
gi|21227699|ref|NP_633621.1| integral membrane protein [Met... 100 4e-20
gi|126177994|ref|YP_001045959.1| MotA/TolQ/ExbB proton chan... 100 5e-20
gi|116754461|ref|YP_843579.1| integral membrane protein [Me... 100 7e-20
gi|91774177|ref|YP_566869.1| MotA/TolQ/ExbB proton channel ... 97 4e-19
gi|169830903|ref|YP_001716885.1| conserved hypothetical pro... 89 1e-16
gi|45358054|ref|NP_987611.1| MotA/TolQ/ExbB proton channel ... 87 7e-16
gi|91201663|emb|CAJ74723.1| conserved hypothetical protein ... 86 9e-16
gi|150398936|ref|YP_001322703.1| MotA/TolQ/ExbB proton chan... 84 5e-15
gi|15678698|ref|NP_275813.1| hypothetical protein MTH671 [M... 84 6e-15
gi|148262851|ref|YP_001229557.1| Biopolymer transport prote... 81 4e-14
gi|118744576|ref|ZP_01592567.1| biopolymer transport protei... 81 4e-14
gi|148643778|ref|YP_001274291.1| predicted biopolymer trans... 79 1e-13
gi|159905141|ref|YP_001548803.1| MotA/TolQ/ExbB proton chan... 77 5e-13
gi|134046505|ref|YP_001097990.1| MotA/TolQ/ExbB proton chan... 77 6e-13
gi|148643461|ref|YP_001273974.1| biopolymer transport prote... 76 1e-12
gi|150403120|ref|YP_001330414.1| MotA/TolQ/ExbB proton chan... 75 2e-12
gi|118579663|ref|YP_900913.1| MotA/TolQ/ExbB proton channel... 74 4e-12
gi|87307039|ref|ZP_01089185.1| integral membrane protein [B... 74 4e-12
gi|89896605|ref|YP_520092.1| hypothetical protein DSY3859 [... 74 7e-12
gi|171915176|ref|ZP_02930646.1| MotA/TolQ/ExbB proton chann... 72 2e-11
gi|84489900|ref|YP_448132.1| conserved hypothetical membran... 70 9e-11
gi|20093506|ref|NP_613353.1| Biopolymer transport protein [... 69 1e-10
gi|114567479|ref|YP_754633.1| hypothetical protein Swol_196... 69 2e-10
gi|67157563|ref|ZP_00418812.1| hypothetical protein AvinDRA... 61 4e-08
gi|146282158|ref|YP_001172311.1| hypothetical protein PST_1... 60 6e-08
gi|39935467|ref|NP_947743.1| hypothetical protein RPA2400 [... 60 8e-08
gi|91774473|ref|YP_544229.1| MotA/TolQ/ExbB proton channel ... 59 2e-07
gi|167364794|ref|ZP_02298938.1| conserved hypothetical prot... 58 3e-07
gi|152989267|ref|YP_001348722.1| hypothetical protein PSPA7... 58 3e-07
gi|30248642|ref|NP_840712.1| hypothetical protein NE0631 [N... 58 4e-07
gi|30248760|ref|NP_840830.1| hypothetical protein NE0756 [N... 57 5e-07
gi|15597120|ref|NP_250614.1| hypothetical protein PA1924 [P... 57 6e-07
>gi|34541213|ref|NP_905692.1| hypothetical protein PG1555 [Porphyromonas gingivalis W83]
gi|34397529|gb|AAQ66591.1| conserved domain protein [Porphyromonas gingivalis W83]
Length = 192
Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/189 (99%), Positives = 189/189 (100%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+SNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT
Sbjct: 4 LSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 63
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGL 120
EALRAEAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGL
Sbjct: 64 EALRAEAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGL 123
Query: 121 MGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVW 180
MGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVW
Sbjct: 124 MGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVW 183
Query: 181 LDYINEKLS 189
LDYINEKLS
Sbjct: 184 LDYINEKLS 192
>gi|153806139|ref|ZP_01958807.1| hypothetical protein BACCAC_00394 [Bacteroides caccae ATCC 43185]
gi|149130816|gb|EDM22022.1| hypothetical protein BACCAC_00394 [Bacteroides caccae ATCC 43185]
Length = 204
Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 128/195 (65%), Gaps = 10/195 (5%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAG-LD 59
+S++++W+S GLLVPV+ LI LF ++LLL G+ +G + S R+ + ++ N+ G L
Sbjct: 4 ISDILYWISTGLLVPVIVLLIILFCRALLLAGSFYGQYMSIRKTE----ALLRNELGKLT 59
Query: 60 TEALRAEAAKRPHAPFENVLA---EVLDADS--ARRNLLIGRYELSREQRLSSAKVLTKF 114
+E + +K P V+ +VLDA A+ L+ +E++ ++ L+ +K LTK
Sbjct: 60 SETVGELNSKLPEKSRSLVIMYMRQVLDARDTPAQVQRLLANFEIAADKDLAISKTLTKL 119
Query: 115 GPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYN 174
GPILGLMGTLIPMGPAL GL++GDI MAYNMQ+AFATTV+G+ A AVG++ + + +
Sbjct: 120 GPILGLMGTLIPMGPALAGLASGDIASMAYNMQIAFATTVVGLVAGAVGFLTQQVKQRWY 179
Query: 175 RNDLVWLDYINEKLS 189
D+ L++I E L+
Sbjct: 180 LQDMTNLEFIAELLN 194
>gi|29345902|ref|NP_809405.1| integral membrane protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29337796|gb|AAO75599.1| integral membrane protein [Bacteroides thetaiotaomicron VPI-5482]
Length = 205
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 123/191 (64%), Gaps = 2/191 (1%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+S++++W+S GLLVPV+ LI LF +++LL G+ +G + S R+ + +
Sbjct: 4 ISDILYWISTGLLVPVIVLLIILFCRAILLAGSFYGQYLSIRKTETLLRNELSKLTPDTV 63
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADS--ARRNLLIGRYELSREQRLSSAKVLTKFGPIL 118
E L ++ + + + +VLDA A+ L+ +E++ ++ L+ +K LTK GPIL
Sbjct: 64 EELSSKLPENSRSLVITYMRQVLDARDTPAQVQRLLANFEIAADKDLAISKTLTKLGPIL 123
Query: 119 GLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDL 178
GLMGTLIPMGPAL GL++GDI MAYNMQ+AFATTV+G+ A AVG++ + + + D+
Sbjct: 124 GLMGTLIPMGPALAGLASGDIASMAYNMQIAFATTVVGLVAGAVGFLTQQVKQRWYLQDM 183
Query: 179 VWLDYINEKLS 189
L++I+E L+
Sbjct: 184 TNLEFISELLN 194
>gi|167764708|ref|ZP_02436829.1| hypothetical protein BACSTE_03098 [Bacteroides stercoris ATCC
43183]
gi|167697377|gb|EDS13956.1| hypothetical protein BACSTE_03098 [Bacteroides stercoris ATCC
43183]
Length = 199
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 125/191 (65%), Gaps = 2/191 (1%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+S++++W+S GLLVPV+ LI LF +S+LLLG FG + + R+ ++
Sbjct: 4 ISDILYWISTGLLVPVIVLLIILFGRSVLLLGNFFGQYLAIRKTDALLRKELDALTPETV 63
Query: 61 EALRAEAAKRPHAPFENVLAEVLD-ADS-ARRNLLIGRYELSREQRLSSAKVLTKFGPIL 118
L +K+ ++ + +++ DS A L+ +E++ ++ L+ +K LTK GP+L
Sbjct: 64 SELGGHLSKKNNSLVVAYIHRIIEMKDSPAHVQRLLADFEIAADKDLAISKTLTKMGPML 123
Query: 119 GLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDL 178
GLMGTLIPMGPALVGLSTGDI MAYNMQVAFATTV+G+F+SA+G+I + + + D+
Sbjct: 124 GLMGTLIPMGPALVGLSTGDIASMAYNMQVAFATTVVGLFSSAIGFITQQVKQRWYLQDM 183
Query: 179 VWLDYINEKLS 189
L++++E L+
Sbjct: 184 TNLEFLSELLN 194
>gi|150004735|ref|YP_001299479.1| integral membrane protein [Bacteroides vulgatus ATCC 8482]
gi|149933159|gb|ABR39857.1| integral membrane protein [Bacteroides vulgatus ATCC 8482]
Length = 199
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 130/194 (67%), Gaps = 8/194 (4%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+S+++FW+SNGLLVPVV LI LFI+SLLL+G+ FG + + RR T A + + L
Sbjct: 4 ISDILFWISNGLLVPVVVLLIILFIRSLLLIGSFFGQYLAIRR---TDALLRQQLDTLTI 60
Query: 61 EALRAEAAKRPHAPFENVLA---EVLDADS--ARRNLLIGRYELSREQRLSSAKVLTKFG 115
+ L K P V+A VL++ A L+ +E++ ++ L+ +K LTK G
Sbjct: 61 DTLSELEGKLPVKSNSLVIAYIRRVLESKDRPAHVQRLLADFEITADKDLAISKTLTKMG 120
Query: 116 PILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNR 175
P+LGLMGTLIPMGPALVGLSTGDI MAYNMQVAFATTV+G+F+SA+G+I + + +
Sbjct: 121 PMLGLMGTLIPMGPALVGLSTGDIASMAYNMQVAFATTVVGLFSSAIGFITQQVKQRWYL 180
Query: 176 NDLVWLDYINEKLS 189
D+ L++++E L+
Sbjct: 181 QDMTNLEFLSELLT 194
>gi|53713983|ref|YP_099975.1| integral membrane protein [Bacteroides fragilis YCH46]
gi|60682184|ref|YP_212328.1| hypothetical protein BF2711 [Bacteroides fragilis NCTC 9343]
gi|52216848|dbj|BAD49441.1| integral membrane protein [Bacteroides fragilis YCH46]
gi|60493618|emb|CAH08407.1| putative membrane protein [Bacteroides fragilis NCTC 9343]
Length = 200
Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 127/195 (65%), Gaps = 10/195 (5%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+S++++W+S GLLVP + LI LF ++LLL+G+ +G + S R+ + ++ N+ T
Sbjct: 4 ISDILYWISTGLLVPDIVLLIVLFGRALLLVGSFYGQYLSIRKTE----ALLRNELNALT 59
Query: 61 EALRAE-AAKRPHAPFENVLA---EVLDADS--ARRNLLIGRYELSREQRLSSAKVLTKF 114
A E A K P V++ +VL A A+ L+ +E++ ++ L+ +K LTK
Sbjct: 60 PATVMELADKLPEKSSSLVISYIRQVLQAHESPAQIQRLLANFEIAADKDLAISKTLTKL 119
Query: 115 GPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYN 174
GPILGLMGTLIPMGPAL GL++GDI MAYNMQ+AFATTV+G+ A AVG++ + + +
Sbjct: 120 GPILGLMGTLIPMGPALAGLASGDIASMAYNMQIAFATTVVGLVAGAVGFLTQQVKQRWY 179
Query: 175 RNDLVWLDYINEKLS 189
D+ L++++E L+
Sbjct: 180 LQDMTNLEFLSELLN 194
>gi|160890477|ref|ZP_02071480.1| hypothetical protein BACUNI_02919 [Bacteroides uniformis ATCC 8492]
gi|156860209|gb|EDO53640.1| hypothetical protein BACUNI_02919 [Bacteroides uniformis ATCC 8492]
Length = 201
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 119/191 (62%), Gaps = 2/191 (1%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+SN +FW+SNGLLVPVV L+ F+++++L G FG + + Q+ F +EN +
Sbjct: 4 ISNTLFWISNGLLVPVVVLLLLFFLRAIILAGGFFGEFYQRMKLQKQFTETLENITPENI 63
Query: 61 EALRAEAAKRPHAPFENVLAEV--LDADSARRNLLIGRYELSREQRLSSAKVLTKFGPIL 118
+ L + ++P L+++ D+A L+ YE+ E+ L ++ K GP+L
Sbjct: 64 DGLLQQLPSAGNSPLLRNLSKLSAHRDDAAYCEHLLANYEMEAEKELGRSRTFIKLGPML 123
Query: 119 GLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDL 178
GLMGTLIPMGPALVGL+ GDI MAYNMQVAFATTV+G+ +AVG I L + + + ++
Sbjct: 124 GLMGTLIPMGPALVGLAQGDISSMAYNMQVAFATTVVGLVIAAVGVITLQVKQRWYAREM 183
Query: 179 VWLDYINEKLS 189
L+Y+ + +S
Sbjct: 184 NDLEYLYKVIS 194
>gi|53713807|ref|YP_099799.1| integral membrane protein [Bacteroides fragilis YCH46]
gi|60682025|ref|YP_212169.1| putative transport-related membrane protein [Bacteroides fragilis
NCTC 9343]
gi|52216672|dbj|BAD49265.1| integral membrane protein [Bacteroides fragilis YCH46]
gi|60493459|emb|CAH08245.1| putative transport-related membrane protein [Bacteroides fragilis
NCTC 9343]
Length = 205
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 117/192 (60%), Gaps = 6/192 (3%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRR--RQETFACIIENKAGL 58
+SN +FW+SNGLLVPVV L+ F +++LL G FG + YRR Q++ A +E
Sbjct: 4 ISNALFWISNGLLVPVVVLLLLFFARAVLLAGGFFGEF--YRRVHTQKSLAEQLEELTPD 61
Query: 59 DTEALRAEAAKRPHAPFENVLAEVLDA--DSARRNLLIGRYELSREQRLSSAKVLTKFGP 116
+ E P + + ++ ++A L+ +E+ EQ L ++ K GP
Sbjct: 62 NIEEKANSLTGDRSTPLQRCVYKLYTHRDNAAYCERLLANFEVDAEQELGRSRTFVKLGP 121
Query: 117 ILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRN 176
+LGLMGTLIPMGPALVGL+TGDI MAYNMQVAFATTV+GM +A+G + L I + +
Sbjct: 122 MLGLMGTLIPMGPALVGLATGDIASMAYNMQVAFATTVVGMVIAAIGVVTLQIRQRWYAR 181
Query: 177 DLVWLDYINEKL 188
++ L++I++ L
Sbjct: 182 EINDLEFISKTL 193
>gi|160885822|ref|ZP_02066825.1| hypothetical protein BACOVA_03826 [Bacteroides ovatus ATCC 8483]
gi|156108635|gb|EDO10380.1| hypothetical protein BACOVA_03826 [Bacteroides ovatus ATCC 8483]
Length = 202
Score = 126 bits (316), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 123/191 (64%), Gaps = 5/191 (2%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+S ++FWV+N LL+P + L+ LF++SL+L+G + + + R+ + +I++ A +D
Sbjct: 4 ISKLLFWVANSLLIPDIIILLCLFVRSLILIGGTYNMYMTKRKNDKALDQLIKD-ARIDD 62
Query: 61 EALRAEAAKRPHAPFENVLAEVL--DADSARRNLLIGRYELSREQRLSSAKVLTKFGPIL 118
L+A + ++ + L ++L A + + LI ++E E+ +S +K+L K GP+L
Sbjct: 63 --LKAALPDKDNSLYMGYLRDLLYHPASADYSDFLITKFENEAEKDVSLSKMLAKIGPVL 120
Query: 119 GLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDL 178
GL+GTLI M PALVGLSTGDI MAYNMQV FATTV+G+ SAVG I++ + + D+
Sbjct: 121 GLIGTLISMSPALVGLSTGDISGMAYNMQVVFATTVVGLVISAVGLISMQFKQRWYAKDV 180
Query: 179 VWLDYINEKLS 189
LDY++ L+
Sbjct: 181 NNLDYVSRVLN 191
>gi|167753616|ref|ZP_02425743.1| hypothetical protein ALIPUT_01895 [Alistipes putredinis DSM 17216]
gi|167658241|gb|EDS02371.1| hypothetical protein ALIPUT_01895 [Alistipes putredinis DSM 17216]
Length = 200
Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 120/190 (63%), Gaps = 2/190 (1%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+S V+FWV+N LL+P + L+ LFI++LLL+G ++ + + R+ + +I+N
Sbjct: 4 ISQVLFWVANSLLIPDILLLLLLFIRALLLVGGIYNQYMAKRKNDKRLNDLIKNLTPDKV 63
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADSARR--NLLIGRYELSREQRLSSAKVLTKFGPIL 118
+ LR + ++ + L ++L +++ + LI +E E+ + +K+LTK GP+L
Sbjct: 64 DDLRKALPAKDNSLYIRYLRDLLTNPASQDYADYLISNFENDAEKDVILSKLLTKIGPVL 123
Query: 119 GLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDL 178
GL+GTLI M PALVGLSTGDI M+YNMQV FATTV+G+ S VG ++L + + D+
Sbjct: 124 GLIGTLIAMSPALVGLSTGDIAGMSYNMQVVFATTVVGLVISGVGLVSLQFKQRWYAKDV 183
Query: 179 VWLDYINEKL 188
LDY++ KL
Sbjct: 184 NNLDYVSRKL 193
>gi|73668343|ref|YP_304358.1| integral membrane protein [Methanosarcina barkeri str. Fusaro]
gi|72395505|gb|AAZ69778.1| integral membrane protein [Methanosarcina barkeri str. Fusaro]
Length = 207
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+SN+M S LL+PV+ L L SL+ LG Y +R + + N ++
Sbjct: 7 LSNMMNVFSTALLIPVMFLLTILVFVSLIQLGEFLS---EYTKRHRDWNNLETNCKKIEC 63
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADSARR-------------NLLIGRYELSREQRLSS 107
E ++ ++ A EN+ + AR L YEL +RL
Sbjct: 64 ELQNSDFSEASRA-LENIKQNYMVTSFAREAAKYLKERHFPAIERLSQEYELKMAKRLEH 122
Query: 108 AKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIAL 167
K+ + GP+LGLMGTLIP+GPAL+GLS GD+ +A N+ +AFATTV+G+FA+ +GY+
Sbjct: 123 TKITSTIGPMLGLMGTLIPLGPALIGLSKGDLETLAQNLMIAFATTVVGLFAAGIGYVLT 182
Query: 168 HIVRTYNRNDLVWLDYI 184
+ R + D+ +DYI
Sbjct: 183 QVRRRWYWEDMSDIDYI 199
>gi|20093212|ref|NP_619287.1| MotA/TolQ/ExbB proton channel family protein [Methanosarcina
acetivorans C2A]
gi|19918561|gb|AAM07767.1| MotA/TolQ/ExbB proton channel family protein [Methanosarcina
acetivorans C2A]
Length = 273
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 4 VMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRR--RQETFACIIENKAGLDTE 61
+M+ S LL PVV L+ + SL+L+G + R R+ C + G +
Sbjct: 10 IMYTFSAALLYPVVIVLMLSVLASLILIGEFLSEYAKRHRDIRKLEDDC---KELGKTVK 66
Query: 62 ALR-AEAAKRPHAPFENVLAEVLDADSA----RR-----NLLIGRYELSREQRLSSAKVL 111
L EAAK +N + D+A +R L YE+ ++L K+L
Sbjct: 67 NLEFPEAAKALREIRQNFMVTSFSRDAAPFIEQRYFSAIEKLAAEYEIGMSKQLEKTKIL 126
Query: 112 TKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVR 171
P+LGLMGTLIP+GPAL+GLS GDI +A N+ +AFATTV+G+FA +VGY+ + R
Sbjct: 127 ATISPMLGLMGTLIPLGPALIGLSQGDIATLANNLMIAFATTVVGLFAGSVGYVLTQVRR 186
Query: 172 TYNRNDLVWLDYI 184
+ DL +DYI
Sbjct: 187 RWYWEDLSDIDYI 199
>gi|150386668|ref|ZP_01925189.1| MotA/TolQ/ExbB proton channel [Victivallis vadensis ATCC BAA-548]
gi|150256926|gb|EDM94348.1| MotA/TolQ/ExbB proton channel [Victivallis vadensis ATCC BAA-548]
Length = 196
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 61 EALRA----EAAKRPHAPFENVLAEV--LDADSARRNLLIGRYELSREQRLSSAKVLTKF 114
EA+R+ E K F LAE+ L+ D I YE+ E L ++ + K
Sbjct: 56 EAIRSGQEIEPGKLGTGIFARHLAELASLNWDELECEKRITEYEMKYEHELERSRFMMKV 115
Query: 115 GPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYN 174
P+LGLMGTLIPMGPAL GL++GDIG MAYNMQ+AFATTV+G FA+ VG + + R +
Sbjct: 116 APMLGLMGTLIPMGPALGGLASGDIGSMAYNMQIAFATTVVGCFAAGVGLLVYSVRRHWY 175
Query: 175 RNDLVWLDYINEK 187
++ L Y+ E+
Sbjct: 176 AEEISNLRYVLER 188
>gi|20093420|ref|NP_619495.1| MotA/TolQ/ExbB proton channel family protein [Methanosarcina
acetivorans C2A]
gi|19918793|gb|AAM07975.1| MotA/TolQ/ExbB proton channel family protein [Methanosarcina
acetivorans C2A]
Length = 209
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 11/190 (5%)
Query: 5 MFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIEN-KAGLDTEAL 63
++ S+ LL PV+ L L SL+ LG + R + + + + L A
Sbjct: 11 IYVFSSALLYPVMILLTLLVFVSLIQLGEFLSEYSKRTRDRNSLEVSCKKIRQSLHISAF 70
Query: 64 RAEAAKRPHAPFENVLAEVLDADSAR----RNL-----LIGRYELSREQRLSSAKVLTKF 114
+EA+K +N + +SA+ +N L YE+ +RL K+++
Sbjct: 71 -SEASKALLNIKQNYMVTTFAKESAQYLEDQNFPATGKLSEEYEIRMAKRLEHTKIISTV 129
Query: 115 GPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYN 174
P+LGLMGTLIP+GPAL+GLS GD+ +A N+ +AFATTV+G+F++ + Y+ + R +
Sbjct: 130 APMLGLMGTLIPLGPALIGLSQGDLETLAQNLMIAFATTVVGLFSAGIAYVLTQVRRRWY 189
Query: 175 RNDLVWLDYI 184
D+ +DYI
Sbjct: 190 WEDMSDIDYI 199
>gi|20089242|ref|NP_615317.1| MotA/TolQ/ExbB proton channel family protein [Methanosarcina
acetivorans C2A]
gi|19914121|gb|AAM03797.1| MotA/TolQ/ExbB proton channel family protein [Methanosarcina
acetivorans C2A]
Length = 209
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 11/190 (5%)
Query: 5 MFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIEN-KAGLDTEAL 63
++ S+ LL PV+ L L SL+ LG + R + + + + L A
Sbjct: 11 IYVFSSALLYPVMILLTLLVFVSLIQLGEFLSEYSKRTRDRNSLEVSCKKIRQSLHISAF 70
Query: 64 RAEAAKRPHAPFENVLAEVLDADSAR----RNL-LIGR----YELSREQRLSSAKVLTKF 114
+EA+K +N + +SA+ +N IG+ YE+ +RL K+++
Sbjct: 71 -SEASKALLNIKQNYMVTTFAKESAQYLEDQNFPAIGKLSEEYEIRMAKRLEHTKIISTV 129
Query: 115 GPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYN 174
P+LGLMGTLIP+GPAL+GLS GD+ +A N+ +AFATTV+G+F++ + Y+ + R +
Sbjct: 130 APMLGLMGTLIPLGPALIGLSQGDLETLAQNLMIAFATTVVGLFSAGIAYVLTQVRRRWY 189
Query: 175 RNDLVWLDYI 184
D+ +DYI
Sbjct: 190 WEDMSDIDYI 199
>gi|21227699|ref|NP_633621.1| integral membrane protein [Methanosarcina mazei Go1]
gi|20906094|gb|AAM31293.1| integral membrane protein [Methanosarcina mazei Go1]
Length = 197
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 9 SNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDTEALRAEAA 68
S LL+PV+ L L SL+ LG Y +R + + N L+ + LR
Sbjct: 5 STALLIPVMFLLSLLVFLSLIQLGEFLS---EYTKRHRDWNNLEANCKKLEND-LRNSDF 60
Query: 69 KRPHAPFENVLAEVLDADSAR--------RNL-----LIGRYELSREQRLSSAKVLTKFG 115
EN+ + AR ++L L YE+ +RL K+ + G
Sbjct: 61 TEASRALENIKQNYMVTSFARDASKYLKEKHLPAIERLSQEYEIQMAKRLEHTKITSTIG 120
Query: 116 PILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNR 175
P+LGLMGTLIP+GPAL+GLS GD+ +A N+ +AFATTV+G+FA+ +GY+ + R +
Sbjct: 121 PMLGLMGTLIPLGPALIGLSAGDLETLAQNLMIAFATTVVGLFAAGIGYVLTQVRRRWYW 180
Query: 176 NDLVWLDYI 184
D+ +DYI
Sbjct: 181 EDMSDIDYI 189
>gi|126177994|ref|YP_001045959.1| MotA/TolQ/ExbB proton channel [Methanoculleus marisnigri JR1]
gi|125860788|gb|ABN55977.1| MotA/TolQ/ExbB proton channel [Methanoculleus marisnigri JR1]
Length = 206
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 10/192 (5%)
Query: 3 NVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRR--------QETFACIIEN 54
MF +S LL P + L+ + +L LG + R +ET A +
Sbjct: 10 ETMFTLSGALLYPAIILLLVFVVWTLTALGQFISEYSGRTRNLEQLRDGCRETRALVQAR 69
Query: 55 KAGLDTEALRAEAAKRPHAPFENVLAEVLDAD--SARRNLLIGRYELSREQRLSSAKVLT 112
G E L + F LA++LD D S L+ YE+ L K+LT
Sbjct: 70 SYGEAAETLATSGSNPLLRSFTGDLAKLLDDDRFSIESEKLLQDYEIRIAAELERLKILT 129
Query: 113 KFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRT 172
+ P+LGLMGTLIP+GPAL+GLS G++ +A N+ +AF+TTV+G+FA + Y + R
Sbjct: 130 RTAPMLGLMGTLIPLGPALMGLSAGNVETLASNLVIAFSTTVLGLFAGGIAYTIMLTKRR 189
Query: 173 YNRNDLVWLDYI 184
+ DL ++Y+
Sbjct: 190 WYLQDLSDMEYV 201
>gi|116754461|ref|YP_843579.1| integral membrane protein [Methanosaeta thermophila PT]
gi|116665912|gb|ABK14939.1| integral membrane protein [Methanosaeta thermophila PT]
Length = 214
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 3 NVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDTEA 62
++++ S LL P + L+ LF SL+L+G++ + S RR + A L +
Sbjct: 8 SLLYIFSTSLLYPDMICLLVLFGWSLILVGSVIQEYTSRRRDVHELEEVTLRAASLASSG 67
Query: 63 LRAEAA------KRPHAPFENVLAEVLDADSARRNLLIGRYE-------LSREQRLSSAK 109
EAA + P VL E+ A S N+L R E L +RL +
Sbjct: 68 REKEAAEVLSGYRSPQ--LAGVLGEI--AASLESNILRVRLEKILQDAELDMARRLEPLR 123
Query: 110 VLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHI 169
+ + GPILGLMGTLIPMGPALV LS GD+ MA ++ +AFATTVIG+ + Y +L I
Sbjct: 124 IGMRVGPILGLMGTLIPMGPALVSLSRGDVQSMAASLIIAFATTVIGLVVGGICYCSLLI 183
Query: 170 VRTYNRNDLVWLDY 183
+ DL L+Y
Sbjct: 184 RNRWYHQDLSDLEY 197
>gi|91774177|ref|YP_566869.1| MotA/TolQ/ExbB proton channel [Methanococcoides burtonii DSM 6242]
gi|91713192|gb|ABE53119.1| MotA/TolQ/ExbB proton channel [Methanococcoides burtonii DSM 6242]
Length = 207
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 9/131 (6%)
Query: 67 AAKRPHAPFENVLAEVLDADSARR---------NLLIGRYELSREQRLSSAKVLTKFGPI 117
AA++ H+ +N L D+ + L YE+ +RL K+L+ P+
Sbjct: 73 AAEKLHSLDQNQLVTSFAKDAGEYLKQNSISSIDWLSEEYEVRMTKRLEQTKILSTVAPM 132
Query: 118 LGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRND 177
LGLMGTLIP+GPAL+GL+ GDI Q+A N+ +AFATTV+G+FA VGY+ I + + D
Sbjct: 133 LGLMGTLIPLGPALIGLAQGDILQLANNLMIAFATTVLGLFAGVVGYVLTLIRKRWYWQD 192
Query: 178 LVWLDYINEKL 188
+ +DY+ + +
Sbjct: 193 MADIDYLMDSM 203
>gi|169830903|ref|YP_001716885.1| conserved hypothetical protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169637747|gb|ACA59253.1| conserved hypothetical protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 226
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 8 VSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQ----ETFACIIENKAGLDTEAL 63
++ LL+PV+ GL++ F++ LL LG L G W+ R ++ E F + E T
Sbjct: 16 LAQSLLIPVIIGLLFFFVRVLLELGGLMGEWKERREQKPAGFELFKEMAEASCYGSTPGT 75
Query: 64 RAEAAKRPHA--PFENVLAEVLDADSARRNLLIGRYELSREQR----LSSAKVLTKFGPI 117
A P A L ++ D R +L ++ E++ L + + GP+
Sbjct: 76 PAAVNNLPDALGRVMESLKDIKTTDPEVRRILTQKFLEQEEEKALSTLDKTDAIARLGPM 135
Query: 118 LGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRND 177
LGLMGTLIP+GP L L GD+ +A + +AF TTV G+ A + + R + D
Sbjct: 136 LGLMGTLIPLGPGLAALGKGDLTTLAAAIIIAFDTTVAGLAARGLAFWISKTRRRWYARD 195
Query: 178 LVWLDYINE 186
L L+ E
Sbjct: 196 LTILEGATE 204
>gi|45358054|ref|NP_987611.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis S2]
gi|44920811|emb|CAF30047.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis S2]
Length = 213
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQS-YRRRQETFACIIENKAGLD 59
+S + +S LL+PVVA L+ +++ G + R + II +
Sbjct: 10 LSTTLHIISQSLLLPVVAFLLLFMAYAVINFGEFMAEYSGRVRVNSKDLKNIINTLPDKN 69
Query: 60 TEALRAEAAK----RPHAPFENVLAEVLDAD-----SARRNLLIGRYELSREQRLSSAKV 110
+ + + +K R H L E D S RNL I R EL E+ L
Sbjct: 70 AQEISSLISKMRLNRAHIEIIKELCEEECKDLKMVESHARNL-IEREELRLEKTLEKTDF 128
Query: 111 LTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIV 170
+T+ GP LGLMGTLIPMGP L L GDI +A + +AF TTV+G+ A + Y+ +
Sbjct: 129 VTRLGPTLGLMGTLIPMGPGLAALGAGDIHSLANAIIIAFDTTVVGLAAGGICYVISKVR 188
Query: 171 RTYNRNDLVWLDYINEKL 188
R + + LD + E +
Sbjct: 189 RRWYEEQMSTLDVLMESV 206
>gi|91201663|emb|CAJ74723.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 220
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 20/202 (9%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRR------QETFACIIEN 54
+ +++ +S+ +L PV+ LI LF+ ++ G F ++ ++ +E +IE+
Sbjct: 7 LQSILSVISSAMLYPVMILLIVLFVWMIITTGEFFSEYRKRKKHTLKREMKELIESLIES 66
Query: 55 KAGLDTEALRAEAAKRPHAPFENVLAEVLD---ADSARRNLLIGRYELSREQRLSSA--- 108
+ E + P A F L E +D D R + I S+EQ+++ +
Sbjct: 67 LSQKKPEISPFLKREMP-AYFREFLGEFIDELKGDKDARGIRIEYLLQSKEQKMARSLDK 125
Query: 109 -KVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIAL 167
+++ + GP LGLMGT+IPMGPAL LS GD+ ++ N+ +AF TTV+G+ A+G A
Sbjct: 126 LRLMVRIGPTLGLMGTIIPMGPALSALSKGDLEMLSSNIIIAFTTTVVGL---AIGITAY 182
Query: 168 HIVRTYNR---NDLVWLDYINE 186
+ NR D+ ++Y E
Sbjct: 183 FLSMMKNRWIHEDIKNIEYFTE 204
>gi|150398936|ref|YP_001322703.1| MotA/TolQ/ExbB proton channel [Methanococcus vannielii SB]
gi|150011639|gb|ABR54091.1| MotA/TolQ/ExbB proton channel [Methanococcus vannielii SB]
Length = 213
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 13/197 (6%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRR--RQETFACIIENKAGL 58
+S + +S LL+PV+ L+ I S++L G + + +E I E
Sbjct: 10 LSTTLHAISQSLLIPVIVVLLIFMIYSVMLFGEFMAEYSGRTKINSKELQKIITEISNKR 69
Query: 59 DTEALRAEAAKRPHAP--FENVLAEVLDADSARRNL-------LIGRYELSREQRLSSAK 109
E L E+ + + P + ++ E +SA L ++ + EL E+ L
Sbjct: 70 SNEVL--ESINKLNIPKSYIKIIEESDLNESADHKLREANARTILEKEELRLEKTLEKTD 127
Query: 110 VLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHI 169
+T+ GP GLMGTLIPMGP L L GD+ +A + +AF TTV+G+ A + Y+ I
Sbjct: 128 FITRLGPTFGLMGTLIPMGPGLAALGAGDVTSLANAIIIAFDTTVVGLAAGGICYVISKI 187
Query: 170 VRTYNRNDLVWLDYINE 186
R + + L+ I E
Sbjct: 188 RRRWYEEQMYNLESILE 204
>gi|15678698|ref|NP_275813.1| hypothetical protein MTH671 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2621754|gb|AAB85176.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
Length = 226
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 10/196 (5%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQ----ETFACIIENKA 56
+S + VS LL+PV+AGL+ + +++ LG L + R E+ I N
Sbjct: 10 LSGALHVVSQSLLIPVIAGLLLFMVYAIVTLGGLISEYSGRIRTDVKELESAIKSISNPG 69
Query: 57 GLDTEALRAEAAKRPH---APFENVLAEVLDADSARRNL---LIGRYELSREQRLSSAKV 110
+ ++ P A ++ +R L LI EL + L +
Sbjct: 70 TPEKIIEVVDSMDIPQSQKAVLTDIAGTAELGPKSREALARKLIENEELRAAKSLEKTDI 129
Query: 111 LTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIV 170
+T+ GP LGLMGTLIPMGP L L GDI +A + +AF TTV+G+ + + YI +
Sbjct: 130 VTRLGPTLGLMGTLIPMGPGLAALGAGDINTLAQAIIIAFDTTVVGLASGGIAYIISKVR 189
Query: 171 RTYNRNDLVWLDYINE 186
R + L L+ + E
Sbjct: 190 RRWYEEYLSNLETMAE 205
>gi|148262851|ref|YP_001229557.1| Biopolymer transport protein-like protein [Geobacter uraniireducens
Rf4]
gi|146396351|gb|ABQ24984.1| Biopolymer transport protein-like protein [Geobacter uraniireducens
Rf4]
Length = 198
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+ V++ +S+ LL PVVAGL+ L + +G W RRQ + +A L T
Sbjct: 7 LETVLYLISSVLLFPVVAGLVLLVGWVTIFIGGFLREW--LERRQGVSTPLERYRARL-T 63
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGL 120
AL A+A ++ + LD R L+ EL+ + L + + + GP LGL
Sbjct: 64 AAL-ADAPEKSN----------LDIAMER---LLQTAELALVKSLDKIRFVIRVGPALGL 109
Query: 121 MGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVW 180
MGTLIPMG +L L+ GD+ +MA +M AF T V+G+ S V Y+ + + R D+
Sbjct: 110 MGTLIPMGISLSSLAQGDMPKMAGSMVTAFTTVVVGLACSVVAYLMSLVKEKWVRADMRE 169
Query: 181 LDYINE 186
++Y E
Sbjct: 170 MEYQTE 175
>gi|118744576|ref|ZP_01592567.1| biopolymer transport protein [Geobacter lovleyi SZ]
gi|118682507|gb|EAV88915.1| biopolymer transport protein [Geobacter lovleyi SZ]
Length = 198
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 29/193 (15%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+ ++ +S+ LL PVVAGL+ L + G W RR
Sbjct: 7 LETFLYLISSVLLFPVVAGLVLLVAWVAIFAGGFLREWIERRRN---------------- 50
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADSARRNL------LIGRYELSREQRLSSAKVLTKF 114
P F+ L L+ A +L L+ EL++ + L + + +
Sbjct: 51 -------TSNPLERFQKQLTATLEEGGATPDLDLQAERLLQTAELAQIKSLDKIRFVIRV 103
Query: 115 GPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYN 174
GP LGLMGTLIPMG +L L+ GD+ +MA +M AF T V+G+ S + Y+ + +
Sbjct: 104 GPALGLMGTLIPMGISLSSLAQGDMPKMAGSMVTAFTTVVVGLACSVLAYLMSLVKEKWV 163
Query: 175 RNDLVWLDYINEK 187
R DL +++ EK
Sbjct: 164 RADLREMEFFTEK 176
>gi|148643778|ref|YP_001274291.1| predicted biopolymer transport protein [Methanobrevibacter smithii
ATCC 35061]
gi|148552795|gb|ABQ87923.1| predicted biopolymer transport protein [Methanobrevibacter smithii
ATCC 35061]
Length = 214
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 20/201 (9%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRR------RQETFACIIEN 54
+S + +S L +PV+ L+ + + S++ LG + S ++ R F I
Sbjct: 10 LSGALNVISQSLTIPVMVLLLIIAVVSVIALGGFISEYTSMKKVGVGKIRDLIFK--INT 67
Query: 55 KAGLDTEALRAEAAKRPHAPFENVLAEV-----LDADS----ARRNLLIGRYELSREQRL 105
A +D + P + + VL E+ LD+DS AR+ L+ E ++ L
Sbjct: 68 AASVDDLMNVISGSDIPKSQ-KKVLTEIAKSEALDSDSREALARK--LVEHEEEKIDKSL 124
Query: 106 SSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYI 165
+ ++T+ GP LGLMGTLIP+GP L L GD+ +A + +AF TTV+G+ + A+ Y
Sbjct: 125 RNTDIITRVGPTLGLMGTLIPLGPGLAALGAGDVNTLADALTIAFDTTVVGIGSGALCYF 184
Query: 166 ALHIVRTYNRNDLVWLDYINE 186
I R + L LD +++
Sbjct: 185 ISKIRRGWYDQYLSDLDALSD 205
>gi|159905141|ref|YP_001548803.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis C6]
gi|159886634|gb|ABX01571.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis C6]
Length = 213
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 86 DSARRNLLIGRYELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYN 145
+S RNL I + EL E+ L +T+ GP LGLMGTLIPMGP L L GDI +A
Sbjct: 105 ESHARNL-IEKEELRLEKTLEKTDFVTRLGPTLGLMGTLIPMGPGLAALGAGDIHSLANA 163
Query: 146 MQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVWLDYINEKL 188
+ +AF TTV+G+ A + Y+ + R + + L+ + E +
Sbjct: 164 IIIAFDTTVVGLAAGGICYVISKVRRRWYEEQMSTLEVLMESV 206
>gi|134046505|ref|YP_001097990.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis C5]
gi|132664130|gb|ABO35776.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis C5]
Length = 213
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 76 ENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLS 135
E A++ +S RNL I + EL E+ L +T+ GP LGLMGTLIPMGP L L
Sbjct: 95 EEGCADLKMTESHARNL-IEKEELRLEKTLEKTDFVTRLGPTLGLMGTLIPMGPGLAALG 153
Query: 136 TGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVWLDYINEKL 188
GDI +A + +AF TTV+G+ A + Y+ + R + + L+ + E +
Sbjct: 154 AGDIHALANAIIIAFDTTVVGLAAGGICYVISKVRRRWYEEQMSTLEVLIESV 206
>gi|148643461|ref|YP_001273974.1| biopolymer transport protein [Methanobrevibacter smithii ATCC
35061]
gi|148552478|gb|ABQ87606.1| biopolymer transport protein [Methanobrevibacter smithii ATCC
35061]
Length = 213
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 14/198 (7%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRR-RQETFACIIEN----K 55
+S+ + VS LL PV+ ++ I +L +G L S + E ++ + +
Sbjct: 9 LSSFIHIVSESLLTPVMILIVVGLIVVILCIGGLINERISRKTISSEELESLVRDVSFSQ 68
Query: 56 AGLDTEALRAEAAKRPHAPFENVLAEVLD----ADSARRNL---LIGRYELSREQRLSSA 108
+ + E L E+ +NVL ++ + AR+ L LI E + +
Sbjct: 69 SHSEIEKLIEESNLFDFQ--KNVLVKIANNYDIGSEARKALASELISAEETKLIKSTNKT 126
Query: 109 KVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALH 168
VL + GPILGL+GTLIP+GP L L +GDI +A + VAF TTV G+ A+ Y+
Sbjct: 127 DVLVRVGPILGLLGTLIPLGPGLAALGSGDIVTLAEALTVAFDTTVTGLVIGALAYLVSK 186
Query: 169 IVRTYNRNDLVWLDYINE 186
+ + +DL+ L+ I E
Sbjct: 187 FKKQWYESDLIVLETIAE 204
>gi|150403120|ref|YP_001330414.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis C7]
gi|150034150|gb|ABR66263.1| MotA/TolQ/ExbB proton channel [Methanococcus maripaludis C7]
Length = 213
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 86 DSARRNLLIGRYELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYN 145
+S RNL I + EL E+ L +T+ GP LGLMGTLIPMGP L L GDI +A
Sbjct: 105 ESHARNL-IEKEELRLEKTLEKTDFVTRLGPTLGLMGTLIPMGPGLAALGAGDIHALANA 163
Query: 146 MQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVWLDYINEKL 188
+ +AF TTV+G+ A + ++ + R + + L+ + E +
Sbjct: 164 IIIAFDTTVVGLAAGGICFVISKVRRRWYEEQMSTLEVLMESV 206
>gi|118579663|ref|YP_900913.1| MotA/TolQ/ExbB proton channel [Pelobacter propionicus DSM 2379]
gi|118502373|gb|ABK98855.1| MotA/TolQ/ExbB proton channel [Pelobacter propionicus DSM 2379]
Length = 197
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 29/192 (15%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+ + +F +S+ LL PVV L+ + ++ G + RRQ F +
Sbjct: 7 LESFLFIISSVLLFPVVTALVLITCWVVVFFGWFLREYLD--RRQGRFVSL--------- 55
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADSARRNL------LIGRYELSREQRLSSAKVLTKF 114
+ LA+ L+A + + NL L+ EL + L + + +
Sbjct: 56 ------------ERYRTALAKELEATTDKANLDIALERLLQAAELGLIKSLDKIRFVIRV 103
Query: 115 GPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYN 174
GP LGLMGTLIPMG +L ++ GD+ +MA +M AF T V+G+ +S V Y+ + +
Sbjct: 104 GPALGLMGTLIPMGISLSAMAQGDMPKMAGSMVTAFTTVVVGLASSVVAYVMSLVKEKWV 163
Query: 175 RNDLVWLDYINE 186
R D+ ++++ E
Sbjct: 164 RADMREMEFMTE 175
>gi|87307039|ref|ZP_01089185.1| integral membrane protein [Blastopirellula marina DSM 3645]
gi|87290412|gb|EAQ82300.1| integral membrane protein [Blastopirellula marina DSM 3645]
Length = 112
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 98 ELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGM 157
EL R+S + + P+LGL GTLIP+GPAL+G+S GD+ +A N+ VAF+TTV+G+
Sbjct: 9 ELEAASRISRLNLFARISPMLGLAGTLIPLGPALLGISHGDLESLAQNLVVAFSTTVLGL 68
Query: 158 FASAVGYIALHIVRTYNRNDLVWLDYINEKLS 189
FA V + I R D+ +++ + L+
Sbjct: 69 FAGGVFFAIGAIRRQVYAQDIANAEFVFQCLT 100
>gi|89896605|ref|YP_520092.1| hypothetical protein DSY3859 [Desulfitobacterium hafniense Y51]
gi|89336053|dbj|BAE85648.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 224
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 10/196 (5%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQET-FACIIENKAGLD 59
+S + + G+LVP + L+ L I S+ +G L RRR + +I+ G
Sbjct: 5 LSETLHLIGQGILVPCLIVLVALIITSVWQVGDLLVELFMERRRMKVDIYALIKEIHGAG 64
Query: 60 TEALRAEAA-----KRPHAPFENVLAEV--LDADS--ARRNLLIGRYELSREQRLSSAKV 110
E LR +R + ++AE L S A L+ E E+ + +
Sbjct: 65 PEGLRKTIEGSGLIRRQREALQQLVAESKGLPQPSLVAMAQRLLATEEGKYERTTAVTDL 124
Query: 111 LTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIV 170
+ K GP+ GL+GTLIP+GP +V L GD ++ ++ +AF T + G+ ++AV Y+ +I
Sbjct: 125 VAKLGPMFGLLGTLIPLGPGIVALGMGDTATLSASLAIAFDTAIAGVSSAAVSYVISNIR 184
Query: 171 RTYNRNDLVWLDYINE 186
+ + + L + I E
Sbjct: 185 KRWYDDYLTNFELIME 200
>gi|171915176|ref|ZP_02930646.1| MotA/TolQ/ExbB proton channel [Verrucomicrobium spinosum DSM 4136]
Length = 212
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 111 LTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIV 170
LT+ P+LGLMGTLIP+GPAL GL+ GD+ ++ N+ VAF TVIG+ V + +
Sbjct: 125 LTRVAPMLGLMGTLIPLGPALTGLAAGDMAMLSGNLVVAFTATVIGVLIGCVSFSLGLVR 184
Query: 171 RTYNRNDLVWLDYINEKL 188
R + + D+ L+YI +L
Sbjct: 185 RNWYQRDMSDLEYIIARL 202
>gi|84489900|ref|YP_448132.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
gi|84373219|gb|ABC57489.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
Length = 214
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRR----------------R 44
+S + ++ LL+PV+ L+ I +++ LG + + ++ +
Sbjct: 11 LSGALNVIAQSLLLPVMILLVIFVIFAIIELGAIIAEYTGRKKITAKDKSIIIKNIASCK 70
Query: 45 QETFACIIENKAGL---DTEALRAEAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSR 101
+ C + N + L D E L + AK ++ EVL RNLL + E
Sbjct: 71 TQDEICQVLNDSKLKKYDKEILTS-IAKLDKELYDKQTREVL-----ARNLLEDQ-EFKV 123
Query: 102 EQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASA 161
E+ L A ++ K G GL+GT+IPMGP L L GD+ + N+ VAF TT G+ A +
Sbjct: 124 EKSLEKADIVAKVGSGCGLLGTIIPMGPGLAALGNGDMVTLTSNLTVAFNTTTAGLAAGS 183
Query: 162 VGYIALHIVRTYNRNDLVWLDYINEKL 188
+ ++ I + DL L ++E +
Sbjct: 184 LCFVISKIRSRWYEEDLAMLYDLSETI 210
>gi|20093506|ref|NP_613353.1| Biopolymer transport protein [Methanopyrus kandleri AV19]
gi|19886338|gb|AAM01283.1| Biopolymer transport protein [Methanopyrus kandleri AV19]
Length = 202
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 104 RLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVG 163
++S +++ + GP+LGLMGTLIP+GP L L+ G+I +A ++ AFATTV+G+ ++
Sbjct: 111 KVSRTRIVVRLGPMLGLMGTLIPLGPGLEQLAKGNIAGLATSLITAFATTVVGLASAGAC 170
Query: 164 YIALHIVRTYNRNDLVWLDYINEKL 188
Y+ + R D+ L+++ E +
Sbjct: 171 YVITLFRSRWYRKDVSDLEFLAETI 195
>gi|114567479|ref|YP_754633.1| hypothetical protein Swol_1965 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338414|gb|ABI69262.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 212
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Query: 5 MFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQ-----ETFACIIENK-AGL 58
M ++ GLLVP + L+ ++ +G+L RRR E E G+
Sbjct: 13 MHIIAYGLLVPTLIILLLFVALVIVEMGSLLVEALGERRRSKVNIPELLNAFKEKDFEGI 72
Query: 59 DTEALRAEAAKRPHAPFE-----NVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTK 113
E + + +R A N L V ARR L+G EL + S ++ +
Sbjct: 73 RDEIMNSSLLRRQKAALSELLKYNDLPGVSRQALARR--LLGDEELYYARITSRTDLVAR 130
Query: 114 FGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTY 173
GP+ GLM TLIP+GP L+ L GD +A ++ +AF TV G+ A+ V Y + + +
Sbjct: 131 LGPMFGLMATLIPLGPGLIALGQGDTKTLADSLLIAFDATVTGLAAAGVAYAISQLRKRW 190
Query: 174 NRNDLVWLDYINEKL 188
+ L L+ + E L
Sbjct: 191 YEDYLAGLEALMESL 205
>gi|67157563|ref|ZP_00418812.1| hypothetical protein AvinDRAFT_2238 [Azotobacter vinelandii AvOP]
gi|67085471|gb|EAM04945.1| hypothetical protein AvinDRAFT_2238 [Azotobacter vinelandii AvOP]
Length = 150
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 108 AKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIAL 167
+ ++ + GPILGLMGTLIP+GP L L GD+ + M+VAF TV+G+ G++
Sbjct: 69 SDLIARLGPILGLMGTLIPLGPGLAALGEGDLKVLGVAMRVAFDATVMGLLGGMAGFVLG 128
Query: 168 HIVRTY 173
+ R +
Sbjct: 129 RLRRRW 134
>gi|146282158|ref|YP_001172311.1| hypothetical protein PST_1795 [Pseudomonas stutzeri A1501]
gi|145570363|gb|ABP79469.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
Length = 181
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 52/85 (61%)
Query: 103 QRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAV 162
QRL +V ++ P+LGL+ T+IPMGPAL+ L+ D + N+ +AF+ ++ + AS++
Sbjct: 96 QRLEWLRVTSRSAPMLGLVATMIPMGPALLALTESDAKGIGENLVIAFSAVILALIASSI 155
Query: 163 GYIALHIVRTYNRNDLVWLDYINEK 187
+ L + R + +L ++ + E+
Sbjct: 156 TFFVLTVRRRWLLQELRAIERMGEQ 180
>gi|39935467|ref|NP_947743.1| hypothetical protein RPA2400 [Rhodopseudomonas palustris CGA009]
gi|39649319|emb|CAE27841.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 156
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 66 EAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGLMGTLI 125
EA +R + LA A A + L EL RL +++++ P+LGL+ T+I
Sbjct: 38 EALQRARGTHRSQLAAYQKASGATNDDL----ELWILHRLEWLRIVSRTAPMLGLVATMI 93
Query: 126 PMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVWLDYIN 185
PMGPAL+ L+T D + N+ VAF+ ++ + ++++ + L + R + +L + N
Sbjct: 94 PMGPALLALTTSDAKAVGENLVVAFSAVILALVSASITFFVLTVRRRWYLVELRDFERAN 153
Query: 186 E 186
E
Sbjct: 154 E 154
>gi|91774473|ref|YP_544229.1| MotA/TolQ/ExbB proton channel [Methylobacillus flagellatus KT]
gi|91708460|gb|ABE48388.1| MotA/TolQ/ExbB proton channel [Methylobacillus flagellatus KT]
Length = 145
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 103 QRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAV 162
RL A +L + P+LGLM T+IP+GP L L GD Q+A + AF TV+G+ A +
Sbjct: 63 HRLERADLLGRIPPMLGLMATIIPLGPGLAALGQGDPAQLAQAVTTAFDATVLGLIAGII 122
Query: 163 GYI 165
G +
Sbjct: 123 GLV 125
>gi|167364794|ref|ZP_02298938.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
gi|167067243|gb|EDR71575.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
Length = 193
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 66 EAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGLMGTLI 125
EA +R + LA A A + L EL +L +++++ P+LGL+ T+I
Sbjct: 75 EALQRARGTHRSQLAAYQKASGATNDDL----ELWILHKLEWLRIVSRTAPMLGLVATMI 130
Query: 126 PMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVWLDYIN 185
PMGPAL+ L+T D + N+ VAF+ ++ + ++++ + L + R + +L + N
Sbjct: 131 PMGPALLALTTSDAKAVGENLVVAFSAVILALVSASITFFVLTVRRRWYLVELRDFERAN 190
Query: 186 E 186
E
Sbjct: 191 E 191
>gi|152989267|ref|YP_001348722.1| hypothetical protein PSPA7_3362 [Pseudomonas aeruginosa PA7]
gi|150964425|gb|ABR86450.1| hypothetical protein PSPA7_3362 [Pseudomonas aeruginosa PA7]
Length = 158
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 98 ELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGM 157
EL QRL +V ++ P+LGL+ T+IPMGPAL+ L+ D + N+ VAF+ ++ +
Sbjct: 68 ELWIMQRLEWLRVTSRSAPMLGLVATMIPMGPALLALTRNDAQGIGENLVVAFSAVILAL 127
Query: 158 FASAVGYIALHIVRTYNRNDL 178
A++V + L + R + +L
Sbjct: 128 VAASVTFFILTVRRRWLLQEL 148
>gi|30248642|ref|NP_840712.1| hypothetical protein NE0631 [Nitrosomonas europaea ATCC 19718]
gi|30180237|emb|CAD84542.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 180
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 31/171 (18%)
Query: 1 MSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDT 60
+ + ++ +S L PV+ L +F+ SL LG L F I+ +
Sbjct: 4 LESFLYEISRFFLTPVLIILCIMFVLSLFALGMLL------------FDLILRSLHFSVR 51
Query: 61 EALRAEAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGL 120
++L+ + P A E + EL + L ++ ++ P+LGL
Sbjct: 52 QSLQHYRERHPQANTEAI-------------------ELHLLKLLEPLRLTSRVAPMLGL 92
Query: 121 MGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVR 171
+ T+IPMGPALV ++ G+ ++A N+ VAF+ ++ + +++ Y+ L + R
Sbjct: 93 VATMIPMGPALVAVAAGNTQEIAENLVVAFSAVIVALVTASISYVVLSMRR 143
>gi|30248760|ref|NP_840830.1| hypothetical protein NE0756 [Nitrosomonas europaea ATCC 19718]
gi|30180355|emb|CAD84667.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 169
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 98 ELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGM 157
EL + + ++ ++ P+LGL+ T+IPMGPALV +S G+ MA ++ VAF+ +I +
Sbjct: 70 ELQLLRLIEPLRITSRVAPMLGLVATMIPMGPALVAVSAGNAQGMAESLIVAFSAVIIAL 129
Query: 158 FASAVGYIALHIVRTYNRNDL 178
+++ Y L I R + +L
Sbjct: 130 LTASLSYFVLTIRRRWLLEEL 150
>gi|15597120|ref|NP_250614.1| hypothetical protein PA1924 [Pseudomonas aeruginosa PAO1]
gi|84321391|ref|ZP_00969749.1| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa
C3719]
gi|84327764|ref|ZP_00975780.1| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa
2192]
gi|107101359|ref|ZP_01365277.1| hypothetical protein PaerPA_01002394 [Pseudomonas aeruginosa PACS2]
gi|116049878|ref|YP_791313.1| hypothetical protein PA14_39630 [Pseudomonas aeruginosa UCBPP-PA14]
gi|9947918|gb|AAG05312.1|AE004618_6 hypothetical protein PA1924 [Pseudomonas aeruginosa PAO1]
gi|115585099|gb|ABJ11114.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126166947|gb|EAZ52458.1| hypothetical protein PACG_00896 [Pseudomonas aeruginosa C3719]
gi|126193693|gb|EAZ57756.1| hypothetical protein PA2G_00962 [Pseudomonas aeruginosa 2192]
Length = 158
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 98 ELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGM 157
EL QRL ++ ++ P+LGL+ T+IPMGPAL+ L+ D + N+ VAF+ ++ +
Sbjct: 68 ELWIMQRLEWLRITSRSAPMLGLVATMIPMGPALLALTRNDAQGIGENLVVAFSAVILAL 127
Query: 158 FASAVGYIALHIVRTYNRNDL 178
A+++ + L + R + +L
Sbjct: 128 VAASITFFILTVRRRWLLQEL 148
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 884,634,002
Number of sequences in database: 2,620,852
Database: /apps/blastdb/nr.01
Posted date: May 10, 2008 4:52 AM
Number of letters in database: 976,814,986
Number of sequences in database: 2,761,530
Database: /apps/blastdb/nr.02
Posted date: May 10, 2008 4:46 AM
Number of letters in database: 360,829,861
Number of sequences in database: 1,132,722
Lambda K H
0.324 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 763,730,097
Number of Sequences: 6515104
Number of extensions: 28324180
Number of successful extensions: 109874
Number of sequences better than 1.0e-04: 48
Number of HSP's better than 0.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109799
Number of HSP's gapped (non-prelim): 51
length of query: 189
length of database: 2,222,278,849
effective HSP length: 126
effective length of query: 63
effective length of database: 1,401,375,745
effective search space: 88286671935
effective search space used: 88286671935
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 117 (49.7 bits)