R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9758555|dbj|BAB09056.1| (AB006703) gb|AAD20086.1~gene_id:MRH10.6~similar to
unknown protein [Arabidopsis thaliana]
Length = 450
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 450
0 150 300
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/42 (61%), Positives = 31/42 (73%), Frame = +2
Query: 5 GRGSYQSDAPRGRFNSRNFGRGNGQDGGDRDYNKSKGNGFYR 130
GRG Y ++APRGRF R GRGN QDGGD Y + +GNG+YR
Sbjct: 409 GRGGYPTEAPRGRFGGRGSGRGN-QDGGD--Y-RPRGNGYYR 446
>gi|10697011|emb|CAC12722.1| (AL390738) bA438F9.2 (novel protein similar to
heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)) [Homo sapiens]
Length = 70
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.6, P = 0.80
Identities = 20/53 (37%), Positives = 25/53 (47%), Frame = +2
Query: 5 GRGSYQSDAPRGRFN--SRNFGRGNGQDGGDRDYNKSKGNGFYRPSPHQERGHSG 163
G GSY +D G +N S NFG G + G R G G Y P + G+ G
Sbjct: 6 GSGSY-NDF--GNYNNQSSNFGPMKGGNFGGRSSGPCGGGGQYFAKPRNQGGYGG 57
>gi|10177321|dbj|BAB10647.1| (AB008269) contains similarity to RNA-binding
protein~gene_id:MSL3.12 [Arabidopsis thaliana]
Length = 460
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 3.4, P = 0.97
Identities = 25/60 (41%), Positives = 32/60 (53%), Frame = +2
Query: 8 RGSYQSDAPRGRFNSRNF--GRGNGQDGGDRDYNKSKGNGFYRP-SPHQERGHSGHHQVP 178
RG Y S RG F + +F GRG G GG Y + G RP S + G G+ +VP
Sbjct: 382 RGRYFSG--RGSFRNESFKGGRGGGGRGG---YGRGGGEFSGRPKSSNPRNGGEGYQRVP 436
Query: 179 RNG 187
+NG
Sbjct: 437 QNG 439
>gi|1174321|gb|AAD13517.1| pregastric lipase, LPGL {N-terminal} [lambs,
pharyngeal organs, Peptide Partial, 35 aa, segment 1 of 2]
Length = 35
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | 35
0 20
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 4.5, P = 0.99
Identities = 10/21 (47%), Positives = 16/21 (76%), Frame = +3
Query: 183 MGRILLSPESTKNISQRIQFW 245
+G+I +PE++ N+SQ I FW
Sbjct: 2 LGKIAENPEASMNVSQMISFW 22
>gi|2136879|pir||S59904 lipase, pregastric - sheep (fragments)
Length = 62
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 4.5, P = 0.99
Identities = 10/21 (47%), Positives = 16/21 (76%), Frame = +3
Query: 183 MGRILLSPESTKNISQRIQFW 245
+G+I +PE++ N+SQ I FW
Sbjct: 2 LGKIAENPEASMNVSQMISFW 22
>gi|3859669|emb|CAA22007.1| (AL033502) hypothetical protein [Candida albicans]
Length = 263
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 4.6, P = 0.99
Identities = 22/55 (40%), Positives = 31/55 (56%), Frame = +2
Query: 5 GRGSYQSDAPRGRFNS-RNFGRGNGQDGGDRDYNKSKG--NGFYRPSPHQERGHSGH 166
GRG Y+ D RG + R+ GRG G GG RD + G +G YR +++ G G+
Sbjct: 147 GRGGYR-DGGRGGYGGYRDGGRGGGY-GGYRDGGRGGGYRDGGYRDGGYRDGGRGGY 201
>gi|8778814|gb|AAF79819.1|AC007396_20 (AC007396) T4O12.22 [Arabidopsis
thaliana]
Length = 369
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 369
0 150 300
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 7.8, P = 1.0
Identities = 21/61 (34%), Positives = 32/61 (52%), Frame = +2
Query: 14 SYQSDAPRGRF-NSRNFGRGNGQDGGDRDYNKSKGNGFYRPSPHQERGHS--GHHQVPRN 184
SY RGR +SR GRG G +G +Y+ + G+ +PH+ RG+ G + P
Sbjct: 206 SYGRGRGRGRGRSSRGRGRG-GYNGPPNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQ 264
Query: 185 GQ 190
G+
Sbjct: 265 GR 266
>gi|912722|gb|AAA82849.1| (U30776) envelope glycoprotein gp41 [Human
immunodeficiency virus type 1]
Length = 91
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 9.6, Sum P(2) = 1.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = +3
Query: 240 FWVQIFQL*IVNFSRLDQILIFFMS*IKLFREYGWDV 350
FWV + L + + RL +L+ ++L GWD+
Sbjct: 38 FWVDLRNLCLFLYHRLRDLLLIVTRIVELLGRRGWDL 74
Score = 38 (13.4 bits), Expect = 9.6, Sum P(2) = 1.0
Identities = 6/15 (40%), Positives = 12/15 (80%), Frame = +2
Query: 68 GNGQDGGDRDYNKSK 112
G ++GGD+D ++S+
Sbjct: 14 GIEEEGGDKDRDRSR 28
>gi|912725|gb|AAA82851.1| (U30777) envelope glycoprotein gp41 [Human
immunodeficiency virus type 1]
Length = 91
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 9.6, Sum P(2) = 1.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = +3
Query: 240 FWVQIFQL*IVNFSRLDQILIFFMS*IKLFREYGWDV 350
FWV + L + + RL +L+ ++L GWD+
Sbjct: 38 FWVDLRNLCLFLYHRLRDLLLIVTRIVELLGRRGWDL 74
Score = 38 (13.4 bits), Expect = 9.6, Sum P(2) = 1.0
Identities = 6/15 (40%), Positives = 12/15 (80%), Frame = +2
Query: 68 GNGQDGGDRDYNKSK 112
G ++GGD+D ++S+
Sbjct: 14 GIEEEGGDKDRDRSR 28
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.347 0.156 0.491
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.344 0.156 0.537
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.357 0.156 0.590
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.155 0.557
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.367 0.172 0.692
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.154 0.526
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 161 160 10. 75 3 12 22 0.10 34
30 0.099 37
+2 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
+1 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
-1 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
-2 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
-3 0 161 161 10. 75 3 12 22 0.10 34
30 0.10 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 9
No. of states in DFA: 591 (58 KB)
Total size of DFA: 197 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 157.85u 1.16s 159.01t Elapsed: 00:00:34
Total cpu time: 157.87u 1.20s 159.07t Elapsed: 00:00:34
Start: Mon Feb 4 23:01:54 2002 End: Mon Feb 4 23:02:28 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000