Reference SNP(refSNP) Cluster Report: rs10904559

Reference SNP(refSNP) Cluster Report: rs10904559

refSNP ID: rs10904559
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss39770866 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10904559 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss15789896	SC_SNP\|NT_077567.3_73803	fwd/B	C/T	caccaggacctgggggaagcacaggcacaa	ggccacagctgagagctgacccaggcccca	11/17/03	11/22/03	120	Genomic	unknown
ss16481019	CSHL-HAPMAP\|CSHL-HuAA-200402.chr10.NT_077567.3_73803	fwd/B	C/T	caccaggacctgggggaagcacaggcacaa	ggccacagctgagagctgacccaggcccca	02/17/04	03/04/04	120	Genomic	unknown
ss18878936	SC_SNP\|SC-CHR9-12_NA07340-200402.chr10.NT_077567.3_73803	fwd/B	C/T	caccaggacctgggggaagcacaggcacaa	ggccacagctgagagctgacccaggcccca	02/20/04	03/04/04	120	Genomic	unknown
ss39770866	ABI\|hCV30931535	fwd/B	C/T	caccaggacctgggggaagcacaggcacaa	ggccacagctgagagctgacccaggcccca	07/16/05	07/16/05	126	Genomic	unknown

Fasta sequence (Legend)

 AGCAGGCACT ACTCTAACCC CACTCCACCC TACTCCTGGC AGCCTATCCA GGTACCCACT
 GGACAGTCCC CTGTTAAGAC CGATGATCAG GAATCCTCAC TCTTCCCCAG AATGGAGCGT
 GCAGCCTGGC CCCAACAGCC GCAGCATGAA ACGCCGTGGC AAGTTCTCTG CAGCAGGGTC
 TGTCCCTTCT TGCAGCAGCT ACTGGAAAGG TGGGAATGGG GAAGACAGTC AGCCTGCTCT
 TGGGATATCT GAGGGCAGGG TTGGAGTCAC CACCAGGACC TGGGGGAAGC ACAGGCACAA
 Y
 GGCCACAGCT GAGAGCTGAC CCAGGCCCCA GGATGGCCGA CCGCTGCCCC AGCAGTGGAG
 AAACACCCAC GTCGGTGTAG AATCAGGCCA GGCCAGCCAC AGGCTAACCC AGGAGCAGAC
 GGCTTGAGAG CAGGGAGTGG GGCGGCTCCA AGCTCAGCAG GCCTCATTTC TAGACAGGGA
 GAGGGGATGG TAGGGCAGGA CCCACATGTG ACACCTGAGA GCTACAAAGG AGGAGGCCAG
 GACACCCCCT GGGGGAGCAC TGGAGTGTTG GGTACAGCAA CAAGGCAATA TGGCCGTCTG

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs10904559 was not linked to the human genome 36.3 because it aligned to more than 2 locations on the genome.

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
10	NW_001837930.2	5264966	78633	minus	A	alt_assembly_8	HuRef	HuRef	view	300
10	NW_924584.1	88026	88026	plus	T	alt_assembly_1	Celera	Celera	view	300
10	NT_077567.3	73803	123803	plus	T	ref_assembly	reference	reference	view	300
Y	NT_113974.1	299931	57743368	minus	G	ref_par	reference	PAR	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_077567

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AL713922.12 NC_000010.9	BX322596.3

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .