Reference SNP(refSNP) Cluster Report: rs1192929

Reference SNP(refSNP) Cluster Report: rs1192929

refSNP ID: rs1192929
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	87/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NT_078088.3:g.372873A>G

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss82816335 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1192929 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss1682137	KWOK\|OVLP-000925-240369	fwd/B	C/T	caccaaggaacagcggcctaagtgagggcc	ctcgccctcagcactcttccctggggaaag	10/05/00	10/10/03	87	Genomic	99 %
ss2654622	SC_JCM\|AP001824.2_60214	fwd/B	C/T	caccaaggaacagcggcctaagtgagggcc	ctcgccctcagcactcttccctggggaaag	11/03/00	10/10/03	89	Genomic	unknown
ss3519835	SC_JCM\|AP001888.3_51809	fwd/B	C/T	caccaaggaacagcggcctaagtgagggcc	ctcgccctcagcactcttccctggggaaag	09/24/01	10/10/03	100	Genomic	unknown
ss16128260	SC_SNP\|NT_078088.2_371797	rev/T	A/G	ctttccccagggaagagtgctgagggcgag	ggccctcacttaggccgctgttccttggtg	11/18/03	11/22/03	120	Genomic	unknown
ss82816335	HGSV\|Cor18956_SNV_20070510.chr11_69221855	rev/T	A/G	ctttccccagggaagagtgctgagggcgag	ggccctcacttaggccgctgttccttggtg	11/30/07	12/03/07	130	Genomic	unknown

Fasta sequence (Legend)

 TTAGCGGGTT TGGGCCAGCC AGCTCTAGTG GTGGAGGCTG GTTTGGGCCC TGCTGTCCTG
 CCCTTTCCTC ATGCCTAGGG GCTTGGCTTC CTCAGTCCAC CTTCTCTCTA GCAGTCTCAG
 TGGTTAGGGC GGCCTCTCTG CCAGGAGTGT TTTTGGCTGC AGGAAACAAA CACCAAGGAA
 CAGCGGCCTA AGTGAGGGCC
 Y
 CTCGCCCTCA GCACTCTTCC CTGGGGAAAG ACGTTCCTGC ATTTAACAGT GCCCCCCCCA
 CCCCCCACCA TTAGATGCCT GTAGAAACCC TCAAGTTGTG ACAACCAAAA TACCTCCAGA
 AGTTGTTGCA TGTTCTTAGG AGGCAAGATC ACCCTTAACG GAGGACCACT GACCGGAGCA
 AATAGGATTT CTTTTTGTCC AGCCACAAAT CCAGAGGGAC CCAGTGACCC AGCGATGCCT
 GGGCTGTGCC CTGTGTGATT CCCTTGGTGT CCCTGTCCTG CTGGGGCCTC GTCTCGCCAG
 GGCTGCTGTG GCTTCAGCTG AGCGCCCTGT

GeneView

GeneView via analysis of contig annotation: FGF19 fibroblast growth factor 19

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_078088->NM_005117

function

HuRef

NW_001838027->NM_005117

function

Celera

NW_925106->NM_005117

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_078088->NM_005117->NP_005108	372873	reverse	3' near gene

HuRef	NW_001838027->NM_005117->NP_005108	372877	reverse	3' near gene

Celera	NW_925106->NM_005117->NP_005108	15157788	reverse	3' near gene

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs1192929 maps exactly once on NCBI human chromosome 11

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
11	NW_001838027.1	372877	65804859	minus	A	alt_assembly_8	HuRef	HuRef	view	200
11	NW_925106.1	15157788	66809712	minus	A	alt_assembly_1	Celera	Celera	view	200
11	NT_078088.3	372873	69221855	minus	A	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_078088 AP001824 AP001888 AP001888.2

dbSNP Blast Analysis
GenBank HTGS Finished:
AP001888.4 NC_000011.8

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .