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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs6622151          
refSNP ID: rs6622151
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_018301.2:c.524-11540G>C
NT_011651.16:g.29639917C>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss8509185 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6622151 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss8509185SC_SNP|NT_011651.13_29581413fwd/BC/Gaggggtgatggcaaacgtctgtaatcccagtactcggaaggctgaggcacgggaattgct05/23/0310/10/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs6622151|allelePos=401|totalLen=801|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=116
 ATCAGTAAAC AAACTACATA CACATACACT Catatggagg aagagaggta aagcaaatgt
 ggcaagttgt caacagttgg tgaacgcagg tgaagggtgt gggtgtattc tttcaacttt
 tctccacatt tgatattttc caaaataaaa GGTTGAGGAA AATAACACTT GACTAAAGGC
 TTTAAAAAAA GTAACATAAA TTggccaggt gtggtggctc atgcctacaa tcccaacact
 ttgggaggct gaggtgagtg gatcactgga ggtcaggagt tccagactag cttggccaac
 atggcgtgtg ccactgtccc tggtgaatat tttgtatttc tagtctgtac taaaaatata
 aaaattagcc aggggtgatg gcaaacgtct gtaatcccag
 S
 tactcggaag gctgaggcac gggaattgct cgaacctggg aagtggaggt tgcagtgagc
 tgaaatcatg cccctgcact ttagcctggg cgacacagtg gactctgtct caaaaaaaaa
 aaaagaaaaa aaaaGTAACA TAAATAAATG TTAACTAATA ATAAAGGGAA AAAAGCACAA
 CAAAATACAA GTAAATACTC ATCAGATTag agtctgacga tatctgttgt ggacaaggat
 gtagagcaac ctaaacattt ccacatggct ggtggaattt taacttgggg gaatcccttc
 agaaattagt taacagctat taaagttgaa gacaatgtga acacttcacc acccaattcc
 actcctagat atataccctg agaaactcct gcacacgtgT

  GeneView back to top
GeneView via analysis of contig annotation: RBM41 RNA binding motif protein 41
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_011651->NM_018301
svfunction
HuRefNW_001842391->NM_018301
svfunction
CeleraNW_927717->NM_018301
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_011651->NM_018301->NP_06077129639917reverseintron
HuRefNW_001842391->NM_018301->NP_060771865634reverseintron
CeleraNW_927717->NM_018301->NP_0607713099437reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs6622151 maps exactly once on NCBI human chromosome X
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
XNW_001842391.186563495970909plusCalt_assembly_8HuRefHuRefview400
XNT_011651.1629639917106230265plusCref_assemblyreferencereferenceview400
XNW_927717.13099437106814919plusCalt_assembly_1CeleraCeleraview400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011651
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AL390039.10 NC_000023.9 AC023366.2

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
with2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .