Reference SNP(refSNP) Cluster Report: rs181410

Reference SNP(refSNP) Cluster Report: rs181410

refSNP ID: rs181410
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	79/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NM_001196.2:c.-58-4496A>T
NM_197966.1:c.81-4496A>T
NM_197967.1:c.-276-10657A>T
NT_011519.10:g.1389586T>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss12528728 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs181410 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss240896	KWOK\|OVLP-000621-377302	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	06/30/00	10/10/03	79	Genomic	94 %
ss543622	SC_JCM\|AC007845.12_26389	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	07/12/00	10/10/03	92	Genomic	unknown
ss827341	SC_JCM\|AC006285.1_142583	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	07/27/00	10/10/03	92	Genomic	unknown
ss1053228	KWOK\|OVLP-000804-96228	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	09/02/00	10/10/03	92	Genomic	94 %
ss1315675	TSC-CSHL\|TSC0155939	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	09/06/00	10/10/03	92	Genomic	95 %
ss2066005	KWOK\|OVLP-000925-263731	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	10/07/00	10/10/03	92	Genomic	94 %
ss2066129	KWOK\|OVLP-000925-270427	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	10/07/00	10/10/03	92	Genomic	94 %
ss5849794	SC_JCM\|NT_011519.9_1385417	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	01/10/03	10/10/03	111	Genomic	unknown
ss7991371	SC_SNP\|NT_011519.9_1385417	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	04/15/03	10/10/03	114	Genomic	unknown
ss12528728	WI_SSAHASNP\|chr22.NT_011519.10_1389586	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	07/04/03	04/07/04	116	Genomic	unknown
ss13343826	SC_SNP\|NT_011519.10_1389586	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	10/22/03	10/31/03	119	Genomic	unknown
ss17722040	CSHL-HAPMAP\|CSHL-HuCC-200402.chr22.NT_011519.10_1389586	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	02/19/04	03/04/04	120	Genomic	unknown
ss21844683	SSAHASNP\|WGSA-200403-chr22.chr22.NT_011519.10_1389586	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	03/20/04	03/20/04	121	Genomic	unknown
ss23587991	PERLEGEN\|afd4575045	fwd/B	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	08/10/04	09/13/04	123	Genomic	unknown
ss44303176	ABI\|hCV2655120	fwd/	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	07/18/05	11/03/06	126	Genomic	unknown
ss65825320	KRIBB_YJKIM\|KHS1105	fwd/	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	10/17/06	12/16/06	127	Genomic	unknown
ss69277471	PERLEGEN\|PGP04575045	fwd/	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	01/30/07	08/14/07	127	Genomic	unknown
ss82450301	HGSV\|Cor18956_SNV_20070510.chr22_16611990	fwd/	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	11/30/07	12/02/07	130	Genomic	unknown
ss82653044	HGSV\|Cor19240_SNV_20070510.chr22_16611990	fwd/	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	11/30/07	12/03/07	130	Genomic	unknown
ss91872802	BCMHGSC_JDW\|JWB-1508974	fwd/	A/T	tttaagggccagatatctgcagggcagtcc	ctccttggtcaacatcatccctgtcttcct	02/26/08	03/02/08	129	Genomic	unknown

Fasta sequence (Legend)

 CCTCACGAGT ATGCTCAGAT GCCAGCTTTG CTTCTGAGGC CTATGTGCCT CCCATGCACT
 CTGGAAGCCA AATGTCCTGG AACTCATTGA AAACACCATG CAGTTGGTCA GATAGAGGCA
 TGGGTCACAC GGGGACAAGC ACAGCACACA GGTGCTCCCA GAAGAAGATT TTTAAGGGCC
 AGATATCTGC AGGGCAGTCC
 W
 CTCCTTGGTC AACATCATCC CTGTCTTCCT AGTCCCACTC ACAGGAAACA GCTGACTCAC
 TGAATTTCTT TTCCAGTTtt tttgtttttg tttttgtttg tgtttttttt ggagacagag
 tctcacctgt gtaacccagg ctggagtaca atggcatggt cttggctcac tgcaacctcc
 gcctcccaga ttctagcgat tctcctgcct tagcctcctg agtaactggg actacaggtg
 tgtgccacca cacccggcta atttttgtat ttttagtaga gacggacttt cactatgttg
 ggcaggctgg tcttgaactc ctgacttcat gatcgcccac cttggcctcc caaaatgctg
 ggattacagg cgtgagccac cgtgcctggc cTGAATTTCT TTttttcttt tctttttttt
 tttttttttt ttgagtcgga gtcttgctct gtcgcccagg ctggagtgcg gtggcacgat
 ctcagctcac tgcaagctcc gcctcccagg ttcacgccat tctcctgcct cagcctcccg
 agtagatggg actacaggtg cccagcacca tgcccgctaa tttAGGAACA TCGTGCTGCT
 CTAGGAACGT CGATCCACCC ACCAAACTTC ACAGCATGCT CCGTGCAGTG CCAAGGAAAG
 CTCCAACCCG GAAATGTGAA CACACATGGA CCAT

GeneView

GeneView via analysis of contig annotation: BID BH3 interacting domain death agonist

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_011519->NM_001196

function

reference

NT_011519->NM_197966

function

reference

NT_011519->NM_197967

function

HuRef

NW_001838735->NM_197966

function

Celera

NW_927406->NM_001196

function

Celera

NW_927406->NM_197966

function

Celera

NW_927406->NM_197967

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_011519->NM_001196->NP_001187	1389586	reverse	intron

reference	NT_011519->NM_197966->NP_932070	1389586	reverse	intron

reference	NT_011519->NM_197967->NP_932071	1389586	reverse	intron

HuRef	NW_001838735->NM_197966->NP_932070	428666	forward	intron

Celera	NW_927406->NM_001196->NP_001187	1190136	reverse	intron

Celera	NW_927406->NM_197966->NP_932070	1190136	reverse	intron

Celera	NW_927406->NM_197967->NP_932071	1190136	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs181410 maps exactly once on NCBI human chromosome 22

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
22	NW_927406.1	1190136	1857136	plus	A	alt_assembly_1	Celera	Celera	view	200
22	NW_001838735.2	428666	2051668	minus	A	alt_assembly_8	HuRef	HuRef	view	200
22	NT_011519.10	1389586	16617436	plus	T	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_011519.9 AC007845 AC007845.12 AC016025 AC016025.12

dbSNP Blast Analysis
GenBank HTGS Finished:
AC006285.13 AC007845.14 AC016025.14 NC_000022.9

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/T	T/T	HWP	A	T
ss12528728	HapMap-CEU	European	120	IG	0.383	0.433	0.183	0.479	0.600	0.400

	HapMap-HCB	Asian	90	IG	0.844	0.156		0.584	0.922	0.078

	HapMap-JPT	Asian	88	IG	0.932	0.068		1.000	0.966	0.034

	HapMap-YRI	Sub-Saharan African	120	IG	0.483	0.450	0.067	0.527	0.708	0.292

	CHMJ	Asian	74	IG					0.946	0.054

ss23587991	AFD_EUR_PANEL	European	46	IG	0.565	0.304	0.130	0.251	0.717	0.283

	AFD_AFR_PANEL	African American	44	IG	0.455	0.500	0.045	0.371	0.705	0.295

	AFD_CHN_PANEL	Asian	46	IG	0.739	0.261		0.479	0.870	0.130

ss44303176	AoD_African_American		90	AF					0.670	0.330

	AoD_Caucasian		92	AF					0.640	0.360

	AoD_Chinese		90	AF					0.970	0.030

	AoD_Japanese		90	AF					0.950	0.050

ss65825320	KHP1		180	AF	0.944	0.056		1.000	0.972	0.028

ss69277471	HapMap-CEU	European	120	GF	0.517	0.467	0.017		0.750	0.250

	HapMap-HCB	Asian	90	GF	0.911	0.089			0.956	0.044

	HapMap-JPT	Asian	90	GF	0.978	0.022			0.989	0.011

	HapMap-YRI	Sub-Saharan African	120	GF	0.633	0.367			0.817	0.183

Concordant Genotype	Total Sample	A/A	A/T	T/T
ss12528728	210	157	51	1
ss23587991	68	40	23	2
ss69277471	210	158	51	1

RefSNP Genotype Summary	Total Individual	A/A	A/T	T/T
rs181410	332	194	72	3

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
151	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
151	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	chr22-HapMap-CEU
159	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
159	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	chr22-HapMap-CEU
160	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12239	CEPH1334.13	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
160	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12239	CEPH1334.13	chr22-HapMap-CEU
162	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA07019	CEPH1340.02	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
162	ss23587991	A/T	PERLEGEN	AFD_EUR_PANEL	NA07019		71_IND_CHR_22
162	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA07019	CEPH1340.02	chr22-HapMap-CEU
171	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA07022	CEPH1340.11	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
171	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA07022	CEPH1340.11	chr22-HapMap-CEU
174	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
174	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	chr22-HapMap-CEU
175	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA06991	CEPH1341.02	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
175	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA06991	CEPH1341.02	chr22-HapMap-CEU
186	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA06993	CEPH1341.13	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
186	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA06993	CEPH1341.13	chr22-HapMap-CEU
187	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA06985	CEPH1341.14	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
187	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA06985	CEPH1341.14	chr22-HapMap-CEU
199	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA12056	CEPH1344.12	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
199	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12056	CEPH1344.12	chr22-HapMap-CEU
214	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA07345	CEPH1345.13	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
214	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA07345	CEPH1345.13	chr22-HapMap-CEU
215	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA10857	CEPH1346.01	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
215	ss23587991	T/T	PERLEGEN	AFD_EUR_PANEL	NA10857		71_IND_CHR_22
215	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA10857	CEPH1346.01	chr22-HapMap-CEU
225	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA12043	CEPH1346.11	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
225	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12043	CEPH1346.11	chr22-HapMap-CEU
226	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA12044	CEPH1346.12	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
226	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12044	CEPH1346.12	chr22-HapMap-CEU
229	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA10859	CEPH1347.02	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
229	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA10859	CEPH1347.02	chr22-HapMap-CEU
239	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA11882	CEPH1347.15	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
239	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA11882	CEPH1347.15	chr22-HapMap-CEU
254	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
254	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	chr22-HapMap-CEU
263	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA11830	CEPH1350.11	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
263	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA11830	CEPH1350.11	chr22-HapMap-CEU
335	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12707	CEPH1358.01	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
335	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12707	CEPH1358.01	chr22-HapMap-CEU
344	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12716	CEPH1358.11	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
344	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12716	CEPH1358.11	chr22-HapMap-CEU
399	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
399	ss23587991	T/T	PERLEGEN	AFD_EUR_PANEL	NA10830		71_IND_CHR_22
399	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	chr22-HapMap-CEU
408	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA12154	CEPH1408.10	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
408	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12154	CEPH1408.10	chr22-HapMap-CEU
409	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA12236	CEPH1408.11	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
409	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12236	CEPH1408.11	chr22-HapMap-CEU
429	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA10835	CEPH1416.01	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
429	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA10835	CEPH1416.01	chr22-HapMap-CEU
457	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA10839	CEPH1420.02	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
457	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA10839	CEPH1420.02	chr22-HapMap-CEU
465	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12004	CEPH1420.10	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
465	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12004	CEPH1420.10	chr22-HapMap-CEU
466	ss12528728	T/T	CSHL-HAPMAP	HapMap-CEU	NA12005	CEPH1420.11	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
466	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12005	CEPH1420.11	chr22-HapMap-CEU
546	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12761	CEPH1447.10	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
546	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12761	CEPH1447.10	chr22-HapMap-CEU
577	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12813	CEPH1454.13	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
577	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12813	CEPH1454.13	chr22-HapMap-CEU
611	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12865	CEPH1459.02	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
611	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12865	CEPH1459.02	chr22-HapMap-CEU
618	ss12528728	A/A	CSHL-HAPMAP	HapMap-CEU	NA12872	CEPH1459.09	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
618	ss69277471	A/T	CSHL-HAPMAP	HapMap-CEU	NA12872	CEPH1459.09	chr22-HapMap-CEU
623	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12878	CEPH1463.02	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
623	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12878	CEPH1463.02	chr22-HapMap-CEU
636	ss12528728	A/T	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	r23_ch22_CEU_illumina:golden_gate_1.0.0	966307
636	ss69277471	A/A	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	chr22-HapMap-CEU
5136	ss12528728	T/T	CSHL-HAPMAP	HapMap-YRI	NA19132	YOR101.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5136	ss69277471	A/T	CSHL-HAPMAP	HapMap-YRI	NA19132	YOR101.01	chr22-HapMap-YRI
5137	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5137	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	chr22-HapMap-YRI
5138	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19130	YOR101.03	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5138	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19130	YOR101.03	chr22-HapMap-YRI
5140	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19099	YOR105.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5140	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19099	YOR105.02	chr22-HapMap-YRI
5146	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19238	YOR117.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5146	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19238	YOR117.02	chr22-HapMap-YRI
5150	ss12528728	A/T	CSHL-HAPMAP	HapMap-HCB	NA18529	CH18529	r23_ch22_HCB_illumina:golden_gate_1.1.0	966307
5150	ss69277471	A/A	CSHL-HAPMAP	HapMap-HCB	NA18529	CH18529	chr22-HapMap-HCB
5155	ss12528728	A/T	CSHL-HAPMAP	HapMap-HCB	NA18537	CH18537	r23_ch22_HCB_illumina:golden_gate_1.1.0	966307
5155	ss69277471	A/A	CSHL-HAPMAP	HapMap-HCB	NA18537	CH18537	chr22-HapMap-HCB
5186	ss12528728	A/T	CSHL-HAPMAP	HapMap-HCB	NA18582	CH18582	r23_ch22_HCB_illumina:golden_gate_1.1.0	966307
5186	ss69277471	A/A	CSHL-HAPMAP	HapMap-HCB	NA18582	CH18582	chr22-HapMap-HCB
5193	ss12528728	A/T	CSHL-HAPMAP	HapMap-JPT	NA18942	JA18942	r23_ch22_JPT_illumina:golden_gate_1.1.0	966307
5193	ss69277471	A/A	CSHL-HAPMAP	HapMap-JPT	NA18942	JA18942	chr22-HapMap-JPT
5212	ss12528728	A/T	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	r23_ch22_JPT_illumina:golden_gate_1.1.0	966307
5212	ss69277471	A/A	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	chr22-HapMap-JPT
5240	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5240	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	chr22-HapMap-YRI
5244	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA18860	YOR012.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5244	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA18860	YOR012.01	chr22-HapMap-YRI
5245	ss12528728	T/T	CSHL-HAPMAP	HapMap-YRI	NA18858	YOR012.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5245	ss69277471	A/T	CSHL-HAPMAP	HapMap-YRI	NA18858	YOR012.02	chr22-HapMap-YRI
5254	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA18870	YOR017.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5254	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA18870	YOR017.02	chr22-HapMap-YRI
5259	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA18857	YOR023.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5259	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA18857	YOR023.01	chr22-HapMap-YRI
5262	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA18863	YOR024.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5262	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA18863	YOR024.01	chr22-HapMap-YRI
5263	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA18861	YOR024.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5263	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA18861	YOR024.02	chr22-HapMap-YRI
5266	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5266	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	chr22-HapMap-YRI
5273	ss12528728	T/T	CSHL-HAPMAP	HapMap-YRI	NA19101	YOR042.03	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5273	ss69277471	A/T	CSHL-HAPMAP	HapMap-YRI	NA19101	YOR042.03	chr22-HapMap-YRI
5280	ss12528728	T/T	CSHL-HAPMAP	HapMap-YRI	NA19173	YOR047.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5280	ss69277471	A/T	CSHL-HAPMAP	HapMap-YRI	NA19173	YOR047.01	chr22-HapMap-YRI
5283	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5283	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	chr22-HapMap-YRI
5286	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5286	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	chr22-HapMap-YRI
5295	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5295	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	chr22-HapMap-YRI
5296	ss12528728	T/T	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5296	ss69277471	A/T	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	chr22-HapMap-YRI
5298	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19120	YOR060.01	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5298	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19120	YOR060.01	chr22-HapMap-YRI
5300	ss12528728	A/T	CSHL-HAPMAP	HapMap-YRI	NA19119	YOR060.03	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5300	ss69277471	A/A	CSHL-HAPMAP	HapMap-YRI	NA19119	YOR060.03	chr22-HapMap-YRI
5302	ss12528728	T/T	CSHL-HAPMAP	HapMap-YRI	NA19140	YOR071.02	r23_ch22_YRI_illumina:golden_gate_1.1.0	966307
5302	ss69277471	A/T	CSHL-HAPMAP	HapMap-YRI	NA19140	YOR071.02	chr22-HapMap-YRI

Genotype data submitted for	341	samples from	332	individuals	Individual with multiple genotypes submission:	270

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .