Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss2029398	KWOK|OVLP-000925-671782		fwd/T	A/T	gaccctgtccacccatgtcctcttgtctgc	ggcgcagcagagcgtccgcacacagcactt	10/06/00	10/10/03	87	Genomic			99 %
ss2531877	SC_JCM|AC026968.3_50340		fwd/T	A/T	gaccctgtccacccatgtcctcttgtctgc	ggcgcagcagagcgtccgcacacagcactt	11/03/00	10/10/03	89	Genomic			unknown
ss2821971	TSC-CSHL|TSC0997661		fwd/T	A/T	gaccctgtccacccatgtcctcttgtctgc	ggcgcagcagagcgtccgcacacagcactt	01/02/01	10/30/04	92	Genomic			unknown
ss3242381	YUSUKE|IMS-JST052466		fwd/T	A/T	gaccctgtccacccatgtcctcttgtctgc	ggcgcagcagagcgtccgcacacagcactt	09/05/01	10/10/03	100	Genomic			unknown
ss16406952	CSHL-HAPMAP|CSHL-HuAA-200402.chr1.NT_021937.16_62221		rev/B	A/T	aagtgctgtgtgcggacgctctgctgcgcc	gcagacaagaggacatgggtggacagggtc	02/17/04	03/04/04	120	Genomic			unknown
ss68757519	PERLEGEN|PGP00983073		rev/	A/T	aagtgctgtgtgcggacgctctgctgcgcc	gcagacaagaggacatgggtggacagggtc	01/30/07	01/30/07	127	Genomic			unknown
ss77570157	HGSV|Cor12156_SNV_20070510.chr1_5869428		rev/	A/T	aagtgctgtgtgcggacgctctgctgcgcc	gcagacaagaggacatgggtggacagggtc	10/09/07	10/13/07	129	Genomic			unknown
ss79039372	HGSV|Cor18507_SNV_20070510.chr1_5869428		rev/	A/T	aagtgctgtgtgcggacgctctgctgcgcc	gcagacaagaggacatgggtggacagggtc	10/19/07	10/21/07	129	Genomic			unknown
ss84060822	HGSV|Cor19240_SNV_20070510.chr1_5869428		rev/	A/T	aagtgctgtgtgcggacgctctgctgcgcc	gcagacaagaggacatgggtggacagggtc	11/30/07	12/06/07	130	Genomic			unknown
ss87191960	BCMHGSC_JDW|JWB-0005753		rev/	A/T	aagtgctgtgtgcggacgctctgctgcgcc	gcagacaagaggacatgggtggacagggtc	02/26/08	02/26/08	129	Genomic			unknown

Fasta sequence   (Legend)

 GCAGGGATGC TGTGTGGACC TCCGTGTCAG GGACACAGCC AGCAGATCTC TGTCCAGCAC
 TGCCTGAGAT CCATGCCTGG GCGGGGCCGG CCAGTTCCAC CCAGACCACA TGGTCAAGGA
 AGGGGGTGGT GGTGGCGATG CTTGTGGAGA AATGTCCTCT TCTGAGATCG CGGGTGGTGG
 GCAGCCAGCA ATAGCCCCTT GTGGAGGAGA GTGTGCCTGG GACCCTGTCC ACCCATGTCC
 TCTTGTCTGC
 W
 GGCGCAGCAG AGCGTCCGCA CACAGCACTT GCGGGACCTA CAGGTCATCG CCGCCTACCG
 GGAACGCACG AAGGCCGAGA GCATCGCCAG CCTGCTGAGC CTGGCCATCA CCACGGAGCA
 CACGCTCCAC GCCACGCTGG GGGTCGCCGA GTTCTTTGAG TTTGTGCTTA AGAACCCCCA
 CAACACACAG CACACGGTGA CTGTGGAGAT CGACAACCCC GAGCTCAGGT GAGGTCTCAG
 TGGTGCCCGT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_021937->NM_015102 sv function
HuRef	NW_001838523->NM_015102 sv function
Celera	NW_923572->NM_015102 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/T	T/T	HWP	A	T
ss2821971	HapMap-CEU	European	120	IG	0.700	0.283	0.017	0.655	0.842	0.158
	HapMap-HCB	Asian	90	IG	0.667	0.311	0.022	0.752	0.822	0.178
	HapMap-JPT	Asian	88	IG	0.636	0.341	0.023	0.584	0.807	0.193
	HapMap-YRI	Sub-Saharan African	120	IG	0.833	0.150	0.017	0.479	0.908	0.092
ss3242381	JBIC-allele		1490	AF					0.820	0.180
ss68757519	HapMap-CEU	European	120	GF	1.000				1.000
	HapMap-HCB	Asian	90	GF	1.000				1.000
	HapMap-JPT	Asian	90	GF	1.000				1.000
	HapMap-YRI	Sub-Saharan African	120	GF	1.000				1.000

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN