proteins
| 71 proteins |
C | COG0039 | Malate/lactate dehydrogenases | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Nostoc sp. PCC 7120 (Nostocales | Nostocali) | ||||
| alr4322 | ||||
364 letters (r) 0
0 1728 ||| 1 all1226 (364) 115
-15
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= all1226
(364 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
all1226 670 0.0
DRB0089 38 0.030
aq_1665 35 0.31
SP0964 35 0.37
MA2987 32 1.7
TVN1030 32 1.9
BS_citH 32 2.6
AGl151 32 2.9
sll0249 32 3.0
Ta0633 31 4.2
AF0506 31 4.5
lin0516 31 5.5
MTH1143 31 5.6
BH3158 30 7.9
AF1468 30 9.8
SP1735 30 9.8
# >all1226
# Length = 364
#
# Score = 670 bits (1728), Expect = 0.0
# Identities = 364/364 (100%), Positives = 364/364 (100%)
#
# Query: 1 MTLAFSLSAVQGVYAQSTDVTSEPFIQAALTLMTFDYFATKCKQGSGFTPSHAAKIEAWQ 60
# MTLAFSLSAVQGVYAQSTDVTSEPFIQAALTLMTFDYFATKCKQGSGFTPSHAAKIEAWQ
# Sbjct: 1 MTLAFSLSAVQGVYAQSTDVTSEPFIQAALTLMTFDYFATKCKQGSGFTPSHAAKIEAWQ 60
#
# Query: 61 TANGVGQLRLHLRELDRYPTQKQKLEQAVVQVTEKIAEQGTNLDACNLALLVSDLPNAQF 120
# TANGVGQLRLHLRELDRYPTQKQKLEQAVVQVTEKIAEQGTNLDACNLALLVSDLPNAQF
# Sbjct: 61 TANGVGQLRLHLRELDRYPTQKQKLEQAVVQVTEKIAEQGTNLDACNLALLVSDLPNAQF 120
#
# Query: 121 ATVSPQLLAPSSPSKVPQKVVPSPTNTFRVTSSPSDSKTLAQIDRFGFNSRTVMGIGGFL 180
# ATVSPQLLAPSSPSKVPQKVVPSPTNTFRVTSSPSDSKTLAQIDRFGFNSRTVMGIGGFL
# Sbjct: 121 ATVSPQLLAPSSPSKVPQKVVPSPTNTFRVTSSPSDSKTLAQIDRFGFNSRTVMGIGGFL 180
#
# Query: 181 TTDIYPVVLFRNGDALTDVKGLSFAGGIEAHKRAHPGKWTRWRRQGGKLQLAQKGKWNAL 240
# TTDIYPVVLFRNGDALTDVKGLSFAGGIEAHKRAHPGKWTRWRRQGGKLQLAQKGKWNAL
# Sbjct: 181 TTDIYPVVLFRNGDALTDVKGLSFAGGIEAHKRAHPGKWTRWRRQGGKLQLAQKGKWNAL 240
#
# Query: 241 SFPTTYPKLPDNFKLDGLFRSLSGTGTVAIGGSQSVSAWRDYRFWADGRVVRGGGAGGRT 300
# SFPTTYPKLPDNFKLDGLFRSLSGTGTVAIGGSQSVSAWRDYRFWADGRVVRGGGAGGRT
# Sbjct: 241 SFPTTYPKLPDNFKLDGLFRSLSGTGTVAIGGSQSVSAWRDYRFWADGRVVRGGGAGGRT 300
#
# Query: 301 EGGGSSTVTSSTAPNQRGRYRVQGLTLQITYEDGSEERRILITDPKNSQSAIWLDGIGYT 360
# EGGGSSTVTSSTAPNQRGRYRVQGLTLQITYEDGSEERRILITDPKNSQSAIWLDGIGYT
# Sbjct: 301 EGGGSSTVTSSTAPNQRGRYRVQGLTLQITYEDGSEERRILITDPKNSQSAIWLDGIGYT 360
#
# Query: 361 RRKQ 364
# RRKQ
# Sbjct: 361 RRKQ 364
#
#
# >DRB0089
# Length = 471
#
# Score = 38.1 bits (87), Expect = 0.030
# Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 11/192 (5%)
#
# Query: 172 TVMGIGGFLTTDIYPVVLF-RNGDALTDVKGLSFAGGIEAHKRAHPGKWTRWRRQGGKLQ 230
# + +G+GG +T YPV LF ++G D + + ++ P KW +W RQG
# Sbjct: 287 SAVGVGG-MTITTYPVSLFLKDGTVFNDPYWAPTSFNFKLSRQLEPQKWGKWTRQGNNFT 345
#
# Query: 231 LA-QKGKWNALSFPTTYPKLPDNFKLDGLFRSLSGTGTVAIGGSQSVSAWRDYRFWADGR 289
# + G+ + LP +L G F ++SG GT ++GG V + Y F D
# Sbjct: 346 IKWSDGRTDTFIVKGAPKALPAGTRLSGTFETISGGGTTSLGGDTIVVSSGTYTFRPD-- 403
#
# Query: 290 VVRGGGAGGRTEGGGSSTVTSSTAPNQRGRYRVQGLTLQITYEDGSEERRILITDPKNSQ 349
# G G S TV SS A G Y V G + + S+ERR+ + +
# Sbjct: 404 -GTFTGGSFGGGGDSSVTVGSSRASG--GTYSVSGYGITLR-GSASQERRLFFA--RYND 457
#
# Query: 350 SAIWLDGIGYTR 361
# +++ YTR
# Sbjct: 458 DMLYIGSSTYTR 469
#
#
# >aq_1665
# Length = 334
#
# Score = 34.7 bits (78), Expect = 0.31
# Identities = 24/73 (32%), Positives = 32/73 (42%), Gaps = 16/73 (21%)
#
# Query: 150 VTSSPSDSKTLAQIDRFGFNSRTVMGIGGFLTT----------------DIYPVVLFRNG 193
# V S+P D+ T A I GF R V+G+ G L + DI +VL +G
# Sbjct: 135 VVSNPVDTLTYATIKLTGFEPRRVIGMAGVLDSARFKNFVKEKIGISNADIRTLVLGTHG 194
#
# Query: 194 DALTDVKGLSFAG 206
# D + V SF G
# Sbjct: 195 DLMVPVTSHSFIG 207
#
#
# >SP0964
# Length = 312
#
# Score = 34.7 bits (78), Expect = 0.37
# Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
#
# Query: 102 NLDACNLALLVSDLPNAQFATVSPQLLAPSSPSKVPQKVVPSPTNTFRVTSSPSDSKT-- 159
# N+D CN LL+ P+ + V + A P V K+ PS T+ V + D+
# Sbjct: 136 NVDHCNHGLLIGQDPDLAYDVVKAAVEASEVPVYV--KLTPSVTDIVTVAKAAEDAGASG 193
#
# Query: 160 LAQID-----RFGFNSRTVM---GIGGFLTTDIYPVV--LFRNGDALTDVKGLSFAGGIE 209
# L I+ RF +R + G GG ++PV L R TD+ + GG++
# Sbjct: 194 LTMINTLVGMRFDLKTRKPILANGTGGMSGPAVFPVALKLIRQVAQTTDLPIIGM-GGVD 252
#
# Query: 210 AHKRA 214
# + + A
# Sbjct: 253 SAEAA 257
#
#
# >MA2987
# Length = 560
#
# Score = 32.3 bits (72), Expect = 1.7
# Identities = 17/73 (23%), Positives = 32/73 (43%)
#
# Query: 119 QFATVSPQLLAPSSPSKVPQKVVPSPTNTFRVTSSPSDSKTLAQIDRFGFNSRTVMGIGG 178
# +F +V + P +K + ++ S T+ +P+ + + +DR GF +
# Sbjct: 245 RFYSVIKKATQPEDAAKAAEGIIASGTDVSGPAKAPNSNVQVCSVDRSGFEESVLQAKEH 304
#
# Query: 179 FLTTDIYPVVLFR 191
# DI+ VVL R
# Sbjct: 305 IFAGDIFQVVLSR 317
#
#
# >TVN1030
# Length = 223
#
# Score = 32.3 bits (72), Expect = 1.9
# Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
#
# Query: 91 QVTEKIAEQGTNLDACNLALLVSDLPNAQFATVSPQLLAPSSPSKVPQKVVPSPTNTFRV 150
# +VTE I E + D+C++ L D+ ++ F +P+L P + +P TF
# Sbjct: 59 KVTELIME---SCDSCSVTAL--DITDSMF---NPELTKRCKFVVSPAESLPFSDETFDR 110
#
# Query: 151 TSSPSDSKTLAQIDRFGFNSRTVMGIGG-FLTTDIY 185
# SS ++ LA +D++ V+ GG F+ DI+
# Sbjct: 111 VSSAFLTRNLADVDKYFSEVYRVLKPGGIFVNLDIF 146
#
#
# >BS_citH
# Length = 312
#
# Score = 32.0 bits (71), Expect = 2.6
# Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
#
# Query: 136 VPQKVVP-SPTNTFRVTSSPSDSKTLAQIDRFGFNSRTVMGIGGFLTT------------ 182
# V Q++V SP + V ++P D+ T A GF V+G G L T
# Sbjct: 107 VTQEIVKYSPDSIIVVLTNPVDAMTYAVYKESGFPKERVIGQSGVLDTARFRTFVAEELN 166
#
# Query: 183 ----DIYPVVLFRNGDALTDVKGLSFAGGI 208
# D+ VL +GD + + S+AGGI
# Sbjct: 167 LSVKDVTGFVLGGHGDDMVPLVRYSYAGGI 196
#
#
# >AGl151
# Length = 550
#
# Score = 31.6 bits (70), Expect = 2.9
# Identities = 18/48 (37%), Positives = 29/48 (59%), Gaps = 5/48 (10%)
#
# Query: 252 NFKLDGLFRSLSGTGTV---AIGGSQSVSAWRDYRFWADGRVVRGGGA 296
# +FKL LF +++ + +V AI G ++SAW +RF D + + GGA
# Sbjct: 448 HFKLPELFAAVAPSASVTLAAIAGPLAISAWMGFRF--DYSLAQAGGA 493
#
#
# >sll0249
# Length = 251
#
# Score = 31.6 bits (70), Expect = 3.0
# Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 4/46 (8%)
#
# Query: 219 WTRWRRQGGKLQLAQKGKWNALSFPTTYPKLPDNFKLDGLFRSLSG 264
# W RW++ G +L L +GK+ F +P++ F+L +RSL G
# Sbjct: 199 WQRWKKPGDRLWLCPEGKY---FFQFEHPEI-TAFQLQQFWRSLQG 240
#
#
# >Ta0633
# Length = 422
#
# Score = 31.2 bits (69), Expect = 4.2
# Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 5/78 (6%)
#
# Query: 104 DACNLA-LLVSDLPNAQFATVSPQLLAPSSPSKVPQKVVPSPTNTFRVTSSP----SDSK 158
# DAC A + +S++P +FA +PQL +VP KV+ S V ++ + +
# Sbjct: 106 DACRRAGIDISEIPIEEFARDNPQLKNARRAMRVPDKVIRSYEFVVSVAAAAHLMGTKIR 165
#
# Query: 159 TLAQIDRFGFNSRTVMGI 176
# T + + + +V GI
# Sbjct: 166 TYSDVKKIDIEGNSVTGI 183
#
#
# >AF0506
# Length = 366
#
# Score = 30.8 bits (68), Expect = 4.5
# Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
#
# Query: 33 MTFDYFATKCKQGSGFTPSHAAKIEAWQTANGVGQLRLHLRELDRYPTQKQKLEQAVVQV 92
# M A KC + T +IE W+T + G+++L L+ +D + ++Q +V+
# Sbjct: 1 MNIREIAAKCSKCGYCTTCPTYRIEGWETVSPRGKIQLALKYVD----GEIDVDQKIVKD 56
#
# Query: 93 TEKIAEQGTNLDACNLALLVSDLPNAQFATVSPQLLAPSS 132
# K + G + C + L + D T+ + LAP S
# Sbjct: 57 IFKCSVCGLCQEVCPVELPLIDFWEELRRTLVQKGLAPLS 96
#
#
# >lin0516
# Length = 475
#
# Score = 30.8 bits (68), Expect = 5.5
# Identities = 11/23 (47%), Positives = 16/23 (68%)
#
# Query: 245 TYPKLPDNFKLDGLFRSLSGTGT 267
# TYP+ P+N K D +F+ +GT T
# Sbjct: 173 TYPETPENLKFDNVFKKNNGTNT 195
#
#
# >MTH1143
# Length = 343
#
# Score = 30.8 bits (68), Expect = 5.6
# Identities = 30/122 (24%), Positives = 48/122 (38%), Gaps = 18/122 (14%)
#
# Query: 5 FSLSAVQGVYAQSTDVTSEPFIQAALTLMTFDYFATKCKQGSGFTPSHAAKIEAWQTANG 64
# F+ + Y S T + ++AAL + C GF HA K N
# Sbjct: 73 FAAGTSKNGYYNSFFKTDDEILEAALIIEESGIPRVSCSGAHGFNGEHAVKAARIVKENT 132
#
# Query: 65 VGQLRLHL-RELDRYPTQKQKLEQAVVQVTEKIAEQGTNLDACNLALLVSDLPNAQFATV 123
# +L +++ +L+R TEK+A+ GT+ CNL +L F++V
# Sbjct: 133 SLELLINVGSDLNR-------------SATEKLADYGTDTVCCNLETTNREL----FSSV 175
#
# Query: 124 SP 125
# P
# Sbjct: 176 KP 177
#
#
# >BH3158
# Length = 314
#
# Score = 30.0 bits (66), Expect = 7.9
# Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
#
# Query: 143 SPTNTFRVTSSPSDSKTLAQIDRFGFNSRTVMGIGGFLTT----------------DIYP 186
# SP V ++P+D+ T GF V+G G L T DI
# Sbjct: 115 SPNAYIIVLTNPADAMTYTVYKESGFPKNRVIGQSGVLDTARFRTFVAQELNLSVEDITG 174
#
# Query: 187 VVLFRNGDALTDVKGLSFAGGIEAHK 212
# VL +GD + + S+AGGI K
# Sbjct: 175 FVLGGHGDDMVPLIRYSYAGGIPLEK 200
#
#
# >AF1468
# Length = 489
#
# Score = 30.0 bits (66), Expect = 9.8
# Identities = 36/140 (25%), Positives = 58/140 (40%), Gaps = 21/140 (15%)
#
# Query: 202 LSFAGGIEAHKRAHPGKWTRWRRQGGKLQLAQKGKWNALSFPTTYPKLPDNFKLDGLFRS 261
# +SF G H ++ K T +G +L + ++S P + L D ++ +
# Sbjct: 194 VSFYSGNNYH--SYTAKLTPAFEEGSELAV-------SVSVPQSSAFLYDVVEISATITN 244
#
# Query: 262 LSGTGTVAIGGSQSVSAWRDYRFWADGRVVRGGGAGGRTEGGGSSTVTSSTAPNQRGRYR 321
# L AI S S + +G+V+ E G SS VT +P + GR
# Sbjct: 245 LKDDAVSAIKFSASSN---------NGKVLLSTDEIAELESGESSEVTLLYSPERSGR-- 293
#
# Query: 322 VQGLTLQITYEDGSEERRIL 341
# +TL I+Y+DG + R L
# Sbjct: 294 -DVITLAISYKDGMGKERTL 312
#
#
# >SP1735
# Length = 311
#
# Score = 30.0 bits (66), Expect = 9.8
# Identities = 45/188 (23%), Positives = 75/188 (38%), Gaps = 23/188 (12%)
#
# Query: 86 EQAVVQVTEKIAEQGTNLDACNLALLVSDLPNA-----QFATVSPQLLAPSSPSKVPQKV 140
# E+A V + E + E ++ ++D N + A V LL + P+ + +
# Sbjct: 130 EEAGVTIMEMVKEMDAGDMISRRSIPITDEDNVGTLFEKLALVGRDLLLDTLPAYIAGDI 189
#
# Query: 141 VPSPTNTFRVTSSPSDSKTLAQIDRFGFNSRTVMGIGGFLTTDIYPVV-LFRNGDALTDV 199
# P P +T +VT SP+ ++D N + I G + +PV F GD
# Sbjct: 190 KPEPQDTSQVTFSPNIKPEEEKLDWNKTNRQLFNQIRGM---NPWPVAHTFLKGDRFKIY 246
#
# Query: 200 KGLSFAGGIEAHKRAHPGKWTRWRRQGGKLQLAQKGKWNALSF----PTTYPKLPDNFKL 255
# + L G + +PG+ GK +L ALS P PK+ L
# Sbjct: 247 EALPVEG------QGNPGEILSI----GKKELIVATAEGALSLKQVQPAGKPKMDIASFL 296
#
# Query: 256 DGLFRSLS 263
# +G+ R+L+
# Sbjct: 297 NGVGRTLT 304
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.316 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,096,828
Number of Sequences: 192987
Number of extensions: 1911757
Number of successful extensions: 6189
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6171
Number of HSP's gapped (non-prelim): 27
length of query: 364
length of database: 59,019,183
effective HSP length: 111
effective length of query: 253
effective length of database: 37,597,626
effective search space: 9512199378
effective search space used: 9512199378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
S2: 66 (30.0 bits)