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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract



RepeatMasker repeats found in sequence:

No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames.

Query= SSH5D03.SEQ(1>401) (374 letters)

  Translating both strands of query sequence in all 6 reading frames

Database: nr 505,245 sequences; 158,518,215 total letters.



     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 10 Sequences     : less than 10 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 3138 617 |=============================================================
   6310 2521 513 |===================================================
   3980 2008 437 |===========================================
   2510 1571 398 |=======================================
   1580 1173 333 |=================================
   1000  840 249 |========================
    631  591 185 |==================
    398  406 153 |===============
    251  253  84 |========
    158  169  55 |=====
    100  114  30 |===
   63.1   84  13 |=
   39.8   71  19 |=
   25.1   52  18 |=
   15.8   34   4 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 30  <<<<<<<<<<<<<<<<<
   10.0   30   6 |:
   6.31   24   3 |:
   3.98   21   0 |
   2.51   21   2 |:
   1.58   19   0 |
   1.00   19   0 |
   0.63   19   0 |
   0.40   19   1 |:
   0.25   18   0 |
   0.16   18   0 |
   0.10   18   1 |:
  0.063   17   0 |
  0.040   17   0 |
  0.025   17   0 |
  0.016   17   0 |
  0.010   17   0 |
 0.0063   17   0 |
 0.0040   17   0 |
 0.0025   17   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|6226702|sp|Q08069|RS8_MAIZE40S RIBOSOMAL PROTEIN S... +3   462  6.7e-43   1
gi|3264759|gb|AAC24583.1|(AF071889) 40S ribosomal pro... +3   459  1.4e-42   1
gi|1351014|sp|P49199|RS8_ORYSA40S RIBOSOMAL PROTEIN S... +3   438  2.3e-40   1
gi|3806118|gb|AAC69196.1|(AF097201) 40S ribosomal pro... +3   282  2.9e-26   2
gi|3396100|gb|AAC28863.1|(AF080430) ribosomal protein... +3   262  6.7e-25   2
gi|134017|sp|P25204|RS8_LEIMA40S RIBOSOMAL PROTEIN S8... +3   251  7.4e-24   2
gi|1245435|gb|AAA93474.1|(U50471) putative ribosomal ... +3   275  4.4e-23   1
gi|1351011|sp|P48156|RS8_CAEELPROBABLE 40S RIBOSOMAL ... +3   244  1.7e-22   2
gi|4506743ref|NP_001003.1| ribosomal protein S8 >gi|6... +3   269  1.9e-22   1
gi|7301850|gb|AAF56959.1|(AE003771) CG7808 gene produ... +3   266  3.9e-22   1
gi|7529642|emb|CAB86469.1|(AL163481) 40s ribosomal pr... +3   249  2.5e-20   1
gi|6094196|sp|O14049|RS8_SCHPO40S RIBOSOMAL PROTEIN S... +3   246  5.2e-20   1
gi|171727|gb|AAA63573.1|(J05637) unknown gene; putati... +3   242  1.4e-19   1
gi|6319399ref|NP_009481.1| Ribosomal protein S8A (S14... +3   242  1.4e-19   1
gi|3777552|gb|AAC64931.1|(AF078069) 40S ribosomal pro... +3   228  4.2e-18   1
gi|7440238|pir||T05908probable ribosomal protein S8 -... +3   163  3.2e-11   1
gi|321100|pir||A606876-1E protein - human                +3    89  0.0022    1
gi|1710486|sp|P54048|RL12_METJA50S RIBOSOMAL PROTEIN ... +3    75  0.066     1
gi|2497875|sp|P55952|MT_POTPOMETALLOTHIONEIN (MT) >gi... +2    68  0.31      1
gi|2147667|pir||S59072metallothionein isoform Ia - bl... +2    61  0.92      1
gi|2497872|sp|P55949|MT1_CALSIMETALLOTHIONEIN-I (MT-I... +2    61  0.92      1
gi|127387|sp|P02805|MT1_SCYSEMETALLOTHIONEIN-I (MT-I)... +2    59  0.99      1
gi|3643797|gb|AAC42599.1|(AF055339) salmosin5 [Gloydi... +2    74  0.994     1
gi|1420985|pdb|1DME|   Cd-6 Metallothionein-1 (Cd-6 M... +2    58  0.997     1
gi|6723700|emb|CAB66892.1|(AL035264) hypothetical pro... +3    80  0.9991    1
gi|7486867|pir||T10554hypothetical protein T12G13.110... +3    65  0.9997    1
gi|6322888ref|NP_012960.1| Ykr035cp >gi|549606|sp|P36... -1    73  0.99992   1
gi|5174762ref|NP_005945.1| metallothionein 3 (growth ... +2    56  0.99995   1
gi|2147668|pir||S59073metallothionein isoform IIa - b... +2    56  0.99995   1
gi|2497873|sp|P55950|MT2_CALSIMETALLOTHIONEIN-II (MT-... +2    56  0.99995   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|6226702             |__________________________________________________
gi|3264759             |__________________________________________________
gi|1351014             |__________________________________________________
gi|3806118             |___________________________________________       
gi|3396100             |___________________________________________       
gi|134017              |__________________________________________________
gi|1245435             |_________________________________________________ 
gi|1351011             |___________________________________________       
gi|4506743             |__________________________________________________
gi|7301850             |_________________________________________________ 
gi|7529642             |_________________________________________________ 
gi|6094196             |_________________________________________________ 
gi|171727              |___________________________________________       
gi|6319399             |___________________________________________       
gi|3777552             |__________________________________________________
gi|7440238             |______________                                    
gi|321100              |___________                                       
gi|1710486             |__________________________________                
gi|6723700             |             ____________________                 
gi|7486867             |          _____________________                   
                        __________________________________________________
Query sequence:        |                   |                   |          | 125
                       0                  50                 100


Locus_ID                Frame 2 Hits
gi|3806118             |                                           _______
gi|3396100             |                                           _______
gi|134017              |                                            ______
gi|1351011             |                                           _______
gi|2497875             |              _________________                   
gi|2147667             |              _________________                   
gi|2497872             |              _________________                   
gi|127387              |              _________________                   
gi|3643797             |   ______________________                         
gi|1420985             |              _________                           
gi|5174762             |             __________________                   
gi|2147668             |              _________________                   
gi|2497873             |              _________________                   
Prosite Hits:                                          _____      ____    
                        __________________________________________________
Query sequence:        |                   |                   |          | 125
                       0                  50                 100
__________________
Prosite hits:
   TYR_PHOSPHO_SITE     Tyrosine kinase phosphorylation site.    108..115
   PROKAR_LIPOPROTEIN   Prokaryotic membrane lipoprotein lipid a 79..89
__________________


Locus_ID                Frame -1 Hits
gi|6322888             |                                                  
                        __________________________________________________
Query sequence:        |                   |                   |          | 125
                       0                  50                 100

Use the and icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).
Use the icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the icon (if present) to retrieve links to the Protein Data Bank database.


to_Entrezto_Relatedto_Related >gi|6226702|sp|Q08069|RS8_MAIZE  40S RIBOSOMAL PROTEIN S8
            >gi|7440237|pir||T04088 ribosomal protein S8 - maize
            >gi|1498053|gb|AAB06330.1| (U64436) ribosomal protein S8 [Zea mays]
            Length = 221

Frame  3 hits (HSPs):                        ____________________________ 
Annotated Domains:       ________________________________________________ 
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 221
                       0          50        100        150         200
__________________

Annotated Domains:
   PRODOM               PD005658: RS8(7) RS8E(3)                 9..110
   PRODOM               PD009322: RS8(7)                         113..214
   PROSITE              RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________


  Plus Strand HSPs:

 Score = 462 (162.6 bits), Expect = 6.7e-43, P = 6.7e-43
 Identities = 96/124 (77%), Positives = 103/124 (83%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKT-AAKKETAEEGGDAAAAAEEAKKSN 179
             TQTLVKSAIVQVDAAPFKQWYL HYGV+IGRKKKT AAKK+ AE G +  AAAEE KKSN
Sbjct:    94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAE-GQEVEAAAEETKKSN 152

Query:   180 HVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNS 359
             HV RKLEKR++ R LD HIEEQFG GRLLACISSRPGQCGRADGYILE   +  F  K  
Sbjct:   153 HVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKEL-EFYMKKL 211

Query:   360 QKKKG 374
             Q+KKG
Sbjct:   212 QRKKG 216


to_Entrezto_Relatedto_Related >gi|3264759|gb|AAC24583.1|  (AF071889) 40S ribosomal protein S8 [Prunus
            armeniaca]
            Length = 221

Frame  3 hits (HSPs):                        ____________________________ 
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 221
                       0          50        100        150         200

  Plus Strand HSPs:

 Score = 459 (161.6 bits), Expect = 1.4e-42, P = 1.4e-42
 Identities = 97/124 (78%), Positives = 103/124 (83%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAA-KKETAEEGGDAAAAAEEAKKSN 179
             TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAA KK+T EEG    A  EEAKKSN
Sbjct:    94 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPEEG---EATTEEAKKSN 150

Query:   180 HVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNS 359
             HV  KLEKRQ+ R LDAHIEEQFGGG+LLACISSRPGQCG+ADG ILE   +  F  K  
Sbjct:   151 HVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKEL-EFYMKKL 209

Query:   360 QKKKG 374
             Q+KKG
Sbjct:   210 QRKKG 214


to_Entrezto_Relatedto_Related >gi|1351014|sp|P49199|RS8_ORYSA  40S RIBOSOMAL PROTEIN S8
            >gi|7440236|pir||T04082 probable ribosomal protein S8 - rice
            >gi|968902|dbj|BAA07207.1| (D38010) ribosomal protein S8 [Oryza
            sativa]
            Length = 220

Frame  3 hits (HSPs):                        ____________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 220
                       0          50        100        150         200
__________________

Annotated Domains:
   DOMO                 DM01695: RATRIBOSOMALPROTEINS8           1..198
   PFAM                 Ribosomal_S8e: Ribosomal protein S8e     3..128
   PRODOM               PD005658: RS8(7) RS8E(3)                 9..110
   PRODOM               PD009322: RS8(7)                         113..213
   PROSITE              RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________


  Plus Strand HSPs:

 Score = 438 (154.2 bits), Expect = 2.3e-40, P = 2.3e-40
 Identities = 92/124 (74%), Positives = 96/124 (77%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             TQTLVKSAIVQVDAAPFKQWYL HYGV+IGRKKK          G DA A  EEAKKSNH
Sbjct:    94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKEPPHPRGCC-GQDAEATTEEAKKSNH 152

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362
             V RKLEKRQ+ R LDAHIEEQFG GRLLACISSRPGQCGRADGYILE   +  F  K  Q
Sbjct:   153 VVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKEL-EFYMKKLQ 211

Query:   363 KKKG 374
             +KKG
Sbjct:   212 RKKG 215


to_Entrezto_Relatedto_Related >gi|3806118|gb|AAC69196.1|  (AF097201) 40S ribosomal protein S8 [Schizophyllum
            commune]
            Length = 149

Frame  3 hits (HSPs):             _________________________________       
Frame  2 hits (HSPs):                                             ______  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100

  Plus Strand HSPs:

 Score = 282 (99.3 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
 Identities = 62/107 (57%), Positives = 70/107 (65%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T T VKSAIVQVDA PF+QWY  HY   + +K K  A           A  AE+ K SNH
Sbjct:    31 TNTFVKSAIVQVDATPFRQWYEAHYAQPVTKKGKQHAP----------APEAEDKKLSNH 80

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323
             VQRKL +R+KD K+D  +E QF  GRL A ISSRPGQ GRADGYILE
Sbjct:    81 VQRKLTERKKDAKIDPLLESQFAAGRLYAAISSRPGQSGRADGYILE 127

 Score = 38 (13.4 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
 Identities = 7/15 (46%), Positives = 12/15 (80%), Frame = +2

Query:   329 KDLEFYMKKLPKEKR 373
             ++LEFY++KL   K+
Sbjct:   129 QELEFYVRKLRAGKQ 143


to_Entrezto_Relatedto_Related >gi|3396100|gb|AAC28863.1|  (AF080430) ribosomal protein S8 [Apis mellifera]
            Length = 207

Frame  3 hits (HSPs):                        _________________________    
Frame  2 hits (HSPs):                                                 ____
                        __________________________________________________
Database sequence:     |           |           |           |            | | 207
                       0          50         100         150          200

  Plus Strand HSPs:

 Score = 262 (92.2 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
 Identities = 56/107 (52%), Positives = 71/107 (66%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T+TLVK+AIV +DA PF+QWY  HY + +GRK+   AK   AEE           K+S  
Sbjct:    92 TKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKR--GAKLTEAEE------EVLNKKRSKK 143

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323
              + K + RQ+  K++  +EEQF  GR+LACISSRPGQCGR DGYILE
Sbjct:   144 AEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILE 190

 Score = 45 (15.8 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
 Identities = 7/14 (50%), Positives = 12/14 (85%), Frame = +2

Query:   329 KDLEFYMKKLPKEK 370
             K+LEFYM+++  +K
Sbjct:   192 KELEFYMRRIKSKK 205


to_Entrezto_Relatedto_Related >gi|134017|sp|P25204|RS8_LEIMA  40S RIBOSOMAL PROTEIN S8 >gi|102061|pir||S20063
            ribosomal protein S8 (upstream gene) - Leishmania major
            >gi|283415|pir||S20064 ribosomal protein S8.e, cytosolic -
            Leishmania major >gi|9578|emb|CAA44714.1| (X62942) homologous to
            rat ribosomal protein S8 [Leishmania major]
            >gi|9579|emb|CAA44715.1| (X62942) homologous to rat ribosomal
            protein S8 [Leishmania major]
            Length = 220

Frame  3 hits (HSPs):                       ______________________________
Frame  2 hits (HSPs):                                                 ____
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 220
                       0          50        100        150         200
__________________

Annotated Domains:
   DOMO                 DM01695: RATRIBOSOMALPROTEINS8           1..203
   PFAM                 Ribosomal_S8e: Ribosomal protein S8e     3..127
   PRODOM               PD005658: RS8(7) RS8E(3)                 9..109
   PRODOM               PD009322: RS8(7)                         112..218
   PROSITE              RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________


  Plus Strand HSPs:

 Score = 251 (88.4 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
 Identities = 57/127 (44%), Positives = 83/127 (65%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGG--DAAAAAEEA--- 167
             T+TLVK+ IV VDAAPFK+WY +HYG+++   KK+      AE+ G   A AAA++    
Sbjct:    93 TKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKSAHAAADKYDVN 152

Query:   168 KKSNHVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT 347
             K S  +QR+  +R+++ +++  I +Q   GR+LA I+SRPGQ GRADG +LE   +  F 
Sbjct:   153 KASPKLQREWTRRRRNHRVEKAIADQLREGRVLARITSRPGQSGRADGILLEGAEL-QFY 211

Query:   348 *KNSQKKK 371
              K  +KKK
Sbjct:   212 LKRLEKKK 219

 Score = 46 (16.2 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
 Identities = 7/14 (50%), Positives = 13/14 (92%), Frame = +2

Query:   332 DLEFYMKKLPKEKR 373
             +L+FY+K+L K+K+
Sbjct:   207 ELQFYLKRLEKKKK 220


to_Entrezto_Relatedto_Related >gi|1245435|gb|AAA93474.1|  (U50471) putative ribosomal protein S8 [Anopheles
            gambiae]
            Length = 135

Frame  3 hits (HSPs):          __________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100

  Plus Strand HSPs:

 Score = 275 (96.8 bits), Expect = 4.4e-23, P = 4.4e-23
 Identities = 60/122 (49%), Positives = 80/122 (65%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T+TLVK+AI+ +DA+PF+QWY  HY + +G+K++  A        G+    +++  KSN 
Sbjct:    22 TKTLVKNAIIVIDASPFRQWYESHYLLPLGKKRELKA--------GEEDVLSKKRTKSN- 72

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362
               RK  KRQK+ K+D  +EEQF  GRLLACISSRPGQ GRADGYILE   +  +  K   
Sbjct:    73 -LRKYVKRQKNAKIDPAVEEQFNAGRLLACISSRPGQVGRADGYILEGKELEFYLKKIKN 131

Query:   363 KK 368
             KK
Sbjct:   132 KK 133


to_Entrezto_Relatedto_Related >gi|1351011|sp|P48156|RS8_CAEEL  PROBABLE 40S RIBOSOMAL PROTEIN S8
            >gi|7440242|pir||T16343 hypothetical protein F42C5.8 -
            Caenorhabditis elegans >gi|1065942|gb|AAA81485.1| (U40799) coded
            for by C. elegans cDNA yk51c6.5; coded for by C. elegans cDNA
            yk107e3.5; coded for by C. elegans cDNA yk103h6.5; coded for by C.
            elegans cDNA yk55e5.5; coded for by C. elegans cDNA yk78a4.5; coded
            for by C. elegans cDNA yk107e3.3; coded >
            Length = 208

Frame  3 hits (HSPs):                         ________________________    
Frame  2 hits (HSPs):                                                 ____
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 208
                       0          50         100         150         200
__________________

Annotated Domains:
   DOMO                 DM01695: RATRIBOSOMALPROTEINS8           1..190
   PFAM                 Ribosomal_S8e: Ribosomal protein S8e     3..127
   PRODOM               PD005658: RS8(7) RS8E(3)                 9..109
   PRODOM               PD009322: RS8(7)                         112..205
   PROSITE              RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________


  Plus Strand HSPs:

 Score = 244 (85.9 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
 Identities = 56/107 (52%), Positives = 70/107 (65%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T+TLVK AI+ VDAAPF+QWY  HY + + RKK   AK   +EE      A    K+S+H
Sbjct:    93 TKTLVKGAIISVDAAPFRQWYEAHYALPLARKKN--AK--LSEEDN----AILNKKRSHH 144

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323
               +K  +RQK   +DA + EQF  GRLLA ISS PGQ G+A+GYILE
Sbjct:   145 TMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILE 191

 Score = 40 (14.1 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
 Identities = 6/14 (42%), Positives = 12/14 (85%), Frame = +2

Query:   329 KDLEFYMKKLPKEK 370
             K+L+FY++K+  +K
Sbjct:   193 KELDFYLRKIRAKK 206


to_Entrezto_Related >gi|4506743  ref|NP_001003.1| ribosomal protein S8 >gi|6677813 ref|NP_033124.1||
            ribosomal protein S8 >gi|134009|sp|P09058|RS8_HUMAN 40S RIBOSOMAL
            PROTEIN S8 >gi|70907|pir||R3RT8 ribosomal protein S8 - rat
            >gi|107619|pir||S25022 ribosomal protein S8, cytosolic - human
            >gi|625511|pir||S42110 ribosomal protein S8 - mouse
            >gi|36150|emb|CAA47670.1| (X67247) ribosomal protein S8 [Homo
            sapiens] >gi|57139|emb|CAA29732.1| (X06423) ribosomal protein S8
            (AA 1-208) [Rattus norvegicus] >gi|313298|emb|CAA52050.1| (X73829)
            ribosomal protein S8 [Mus musculus]
            Length = 208

Frame  3 hits (HSPs):                         ____________________________
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 208
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 269 (94.7 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 56/124 (45%), Positives = 81/124 (65%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T+TLVK+ IV +D+ P++QWY  HY + +GRKK     K T EE           K+S  
Sbjct:    93 TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKK---GAKLTPEE-----EEILNKKRSKK 144

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362
             +Q+K ++R+K+ K+ + +EEQF  G+LLACI+SRPGQCGRADGY+LE   +  F  +  +
Sbjct:   145 IQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKEL-EFYLRKIK 203

Query:   363 KKKG 374
              +KG
Sbjct:   204 ARKG 207


to_Entrezto_Relatedto_Related >gi|7301850|gb|AAF56959.1|  (AE003771) CG7808 gene product [Drosophila
            melanogaster]
            Length = 219

Frame  3 hits (HSPs):                          ___________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 266 (93.6 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 57/122 (46%), Positives = 77/122 (63%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T+TLVK++IV +DA PF+QWY  HY + +GRK+    K    E+  D        K+S  
Sbjct:   104 TKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNP--KHAQKEDENDVLTK----KRSEK 157

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362
             V +K  +RQK  K++  +E+QF  GR+LACISSRPGQCGR+DGYILE   +  +  K   
Sbjct:   158 VMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIKS 217

Query:   363 KK 368
             KK
Sbjct:   218 KK 219


to_Entrezto_Relatedto_Related >gi|7529642|emb|CAB86469.1|  (AL163481) 40s ribosomal protein s8
            [Schizosaccharomyces pombe]
            Length = 200

Frame  3 hits (HSPs):                          ___________________________
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150

  Plus Strand HSPs:

 Score = 249 (87.7 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 59/122 (48%), Positives = 71/122 (58%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T TL KSAIVQ+DAAPF+ WY  HYG+ +G K     KK TA              KS H
Sbjct:    93 TNTLTKSAIVQIDAAPFRVWYETHYGILMGSK----GKKATATP----------TPKSKH 138

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362
             VQRK   R  D K+D+ +E QF  GRL A +SSRPGQ GR DGYILE   +  +  + + 
Sbjct:   139 VQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAP 198

Query:   363 KK 368
             KK
Sbjct:   199 KK 200


to_Entrezto_Relatedto_Related >gi|6094196|sp|O14049|RS8_SCHPO  40S RIBOSOMAL PROTEIN S8
            >gi|7489959|pir||T38527 40s ribosomal protein - fission yeast
            (Schizosaccharomyces pombe) >gi|2414627|emb|CAB16376.1| (Z99259)
            40s ribosomal protein s8. [Schizosaccharomyces pombe]
            Length = 200

Frame  3 hits (HSPs):                          ___________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150
__________________

Annotated Domains:
   PFAM                 Ribosomal_S8e: Ribosomal protein S8e     3..127
   PRODOM               PD005658: RS8(7) RS8E(3)                 8..110
   PRODOM               PD009322: RS8(7)                         112..199
   PROSITE              RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________


  Plus Strand HSPs:

 Score = 246 (86.6 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 58/122 (47%), Positives = 71/122 (58%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T TL KSAIVQ+DAAPF+ WY  HYG+ +G K     KK T+              KS H
Sbjct:    93 TNTLTKSAIVQIDAAPFRVWYETHYGILMGSK----GKKATSTPN----------PKSKH 138

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362
             VQRK   R  D K+D+ +E QF  GRL A +SSRPGQ GR DGYILE   +  +  + + 
Sbjct:   139 VQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAP 198

Query:   363 KK 368
             KK
Sbjct:   199 KK 200


to_Entrezto_Relatedto_Related >gi|171727|gb|AAA63573.1|  (J05637) unknown gene; putative [Saccharomyces
            cerevisiae]
            Length = 131

Frame  3 hits (HSPs):           ____________________________________      
                        __________________________________________________
Database sequence:     |                  |                  |            | 131
                       0                 50                100

  Plus Strand HSPs:

 Score = 242 (85.2 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 52/107 (48%), Positives = 65/107 (60%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T TL K+AIVQ+DA PF+QW+  HYG  +G+KK    K+E            E   KS +
Sbjct:    24 TNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNV--KEE------------ETVAKSKN 69

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323
              +RK   R    K+++ +E QF  GRL ACISSRPGQ GR DGYILE
Sbjct:    70 AERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILE 116


to_Entrezto_Related >gi|6319399  ref|NP_009481.1| Ribosomal protein S8A (S14A) (rp19) (YS9); Rps8ap
            >gi|6320949 ref|NP_011028.1|| Ribosomal protein S8B (S14B) (rp19)
            (YS9); Rps8bp >gi|464725|sp|P05754|RS8_YEAST 40S RIBOSOMAL PROTEIN
            S8 (S14) (YS9) (RP19) >gi|625512|pir||S45591 ribosomal protein
            S8.e, cytosolic - yeast (Saccharomyces cerevisiae)
            >gi|407523|emb|CAA81525.1| (Z26879) ribosomal protein S8
            [Saccharomyces cerevisiae] >gi|536115|emb|CAA84893.1| (Z35833) ORF
            YBL072c [Saccharomyces cerevisiae] >gi|603340|gb|AAB64657.1|
            (U18839) Rps8bp: Ribosome protein, small subunit [Saccharomyces
            cerevisiae]
            Length = 200

Frame  3 hits (HSPs):                          ________________________   
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150

  Plus Strand HSPs:

 Score = 242 (85.2 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 52/107 (48%), Positives = 65/107 (60%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T TL K+AIVQ+DA PF+QW+  HYG  +G+KK    K+E            E   KS +
Sbjct:    93 TNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNV--KEE------------ETVAKSKN 138

Query:   183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323
              +RK   R    K+++ +E QF  GRL ACISSRPGQ GR DGYILE
Sbjct:   139 AERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILE 185


to_Entrezto_Relatedto_Related >gi|3777552|gb|AAC64931.1|  (AF078069) 40S ribosomal protein S8 [Griffithsia
            japonica]
            Length = 204

Frame  3 hits (HSPs):                         ___________________________ 
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200

  Plus Strand HSPs:

 Score = 228 (80.3 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 59/123 (47%), Positives = 72/123 (58%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182
             T T VK  I+Q+DA PF+Q+Y  HYG++IG+KK            GD     EE+K S  
Sbjct:    93 TNTFVKGCIIQIDATPFRQYYHNHYGIDIGKKK-----------AGD-----EESKFSKR 136

Query:   183 VQRKLEKRQKDR-KLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNS 359
                K EKR + R  LD  I+E F  GRL A I+SRPGQ GRADGY+LE   +  F  K  
Sbjct:   137 HAGKQEKRCQTRLPLDEGIKELFQSGRLYASIASRPGQSGRADGYLLEGKEL-EFYAKAM 195

Query:   360 QKKK 371
             QKKK
Sbjct:   196 QKKK 199


to_Entrezto_Relatedto_Related >gi|7440238|pir||T05908  probable ribosomal protein S8 - barley (fragment)
            >gi|3355616|emb|CAA03954.1| (AJ000228) ribosomal protein S8
            [Hordeum vulgare]
            Length = 126

Frame  3 hits (HSPs):                                       ______________
                        __________________________________________________
Database sequence:     |                   |                   |          | 126
                       0                  50                 100

  Plus Strand HSPs:

 Score = 163 (57.4 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 31/33 (93%), Positives = 32/33 (96%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKK 101
             TQTLVK+AIVQVDAAPFKQWYL HYGVEIGRKK
Sbjct:    94 TQTLVKNAIVQVDAAPFKQWYLTHYGVEIGRKK 126


to_Entrezto_Relatedto_Related >gi|321100|pir||A60687  6-1E protein - human
            Length = 128

Frame  3 hits (HSPs):                                      ____________   
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 128
                       0                  50                100
__________________

Annotated Domains:
   DOMO                 DM01695: RATRIBOSOMALPROTEINS8           1..129
   PROSITE              RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________


  Plus Strand HSPs:

 Score = 89 (31.3 bits), Expect = 0.0022, P = 0.0022
 Identities = 14/27 (51%), Positives = 21/27 (77%), Frame = +3

Query:     3 TQTLVKSAIVQVDAAPFKQWYLQHYGV 83
             T+TLVK+ IV +D+ P++QWY  HY +
Sbjct:    93 TKTLVKNCIVLIDSTPYRQWYESHYAL 119


to_Entrezto_Relatedto_Related >gi|1710486|sp|P54048|RL12_METJA  50S RIBOSOMAL PROTEIN L12P
            >gi|2119124|pir||D64363 ribosomal protein L12 - Methanococcus
            jannaschii >gi|1499306|gb|AAB98498.1| (U67500) LSU ribosomal
            protein L12A (P1) [Methanococcus jannaschii]
            Length = 102

Frame  3 hits (HSPs):             ________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |         |        |         |         | | 102
                       0        20        40       60        80       100
__________________

Annotated Domains:
   DOMO                 DM00632: RATACIDICRIBOSOMALPROTEINP1     1..101
   PFAM                 60s_ribosomal: 60s Acidic ribosomal prot 1..90
   PRODOM               PD006531: RL12(10) O57705(1)             1..49
__________________


  Plus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 0.068, P = 0.066
 Identities = 26/82 (31%), Positives = 38/82 (46%), Frame = +3

Query:     6 QTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNHV 185
             + ++ +A V+VD A  K       GV+I      AA    A     A AAA E KK    
Sbjct:    23 KAVLSAAGVEVDDARVKALVAGLEGVDIEEAIANAAMPVAAAPAAAAPAAAAEEKKEE-- 80

Query:   186 QRKLEKRQKDRKLDAHIEEQFG 251
             ++K EK+++D    A +   FG
Sbjct:    81 EKKEEKKEEDTAAVAGLAALFG 102


to_Entrezto_Relatedto_Related >gi|2497875|sp|P55952|MT_POTPO  METALLOTHIONEIN (MT) >gi|1935922|gb|AAB52227.1|
            metallothionein 1, MT 1=6.157 kda inducible sulphur-rich
            metal-binding protein [Potamon potamios=semi-terrestrial crabs,
            midgut gland tissue, Peptide, 58 aa]
            Length = 58

Frame  2 hits (HSPs):            _______________________________          
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40
__________________

Annotated Domains:
   Entrez               Domain: BETA.                            1..29
   Entrez               Domain: ALPHA.                           30..58
   Entrez               metal-binding site: CLUSTER B.           4
   Entrez               metal-binding site: CLUSTER B.           5
   Entrez               metal-binding site: CLUSTER B.           10
   Entrez               metal-binding site: CLUSTER B.           12
   Entrez               metal-binding site: CLUSTER B.           17
   Entrez               metal-binding site: CLUSTER B.           21
   Entrez               metal-binding site: CLUSTER B.           23
   Entrez               metal-binding site: CLUSTER B.           26
   Entrez               metal-binding site: CLUSTER B.           28
   Entrez               metal-binding site: CLUSTER A.           31
   Entrez               metal-binding site: CLUSTER A.           34
   Entrez               metal-binding site: CLUSTER A.           38
   Entrez               metal-binding site: CLUSTER A.           40
   Entrez               metal-binding site: CLUSTER A.           46
   Entrez               metal-binding site: CLUSTER A.           50
   Entrez               metal-binding site: CLUSTER A.           54
   Entrez               metal-binding site: CLUSTER A.           56
   Entrez               metal-binding site: CLUSTER A.           57
   PFAM                 metalthio: Metallothionein               1..58
   PRINTS               MTCRUSTACEAN1: Crustacean metallothionei 2..18
   PRINTS               MTCRUSTACEAN2: Crustacean metallothionei 20..38
   PRINTS               MTCRUSTACEAN3: Crustacean metallothionei 43..54
   PRODOM               PD000782: MT(23) MT1(12) MT2(11)         2..57
   PROSITE              4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 28..39
__________________


  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 0.38, P = 0.31
 Identities = 17/41 (41%), Positives = 22/41 (53%), Frame = +2

Query:   110 CQEGNCRGGW*C-CCSCRRSQKE*PCAEKIGEAPERSKA*CS 232
             C+EG C+ G  C C SCR S    PC +   E   +SK  C+
Sbjct:    12 CEEGKCKAG--CKCTSCRCS----PCEKCTSECECKSKEECA 47


to_Entrezto_Relatedto_Related >gi|2147667|pir||S59072  metallothionein isoform Ia - blue crab
            >gi|1176448|gb|AAB35437.1| metallothionein isoform Ia, MT-Ia
            [Callinectes sapidus=blue crabs, hepatopancreas tissues, Peptide,
            58 aa]
            Length = 58

Frame  2 hits (HSPs):           _______________________________           
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40
__________________

Annotated Domains:
   DOMO                 DM08543:                                 1..58
__________________


  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 2.5, P = 0.92
 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2

Query:   110 CQEGNCRGGW*C-CCSCRRSQKE*PCAEKIGEAPERSKA*CS 232
             CQEG C+ G  C C SCR S    PC +        +K  CS
Sbjct:    11 CQEGGCKAG--CQCTSCRCS----PCQKCTSGCKCATKEECS 46


to_Entrezto_Relatedto_Related >gi|2497872|sp|P55949|MT1_CALSI  METALLOTHIONEIN-I (MT-I) (MT-IB/MT-IA)
            >gi|6449389|gb|AAF08964.1| (AF200418) cadmium-inducible
            metallothionein CdMT-I [Callinectes sapidus]
            Length = 59

Frame  2 hits (HSPs):            ______________________________           
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 59
                       0               20               40
__________________

Annotated Domains:
   Entrez               Domain: BETA.                            1..29
   Entrez               Domain: ALPHA.                           30..59
   Entrez               metal-binding site: CLUSTER B.           5
   Entrez               metal-binding site: CLUSTER B.           6
   Entrez               metal-binding site: CLUSTER B.           10
   Entrez               metal-binding site: CLUSTER B.           12
   Entrez               metal-binding site: CLUSTER B.           17
   Entrez               metal-binding site: CLUSTER B.           21
   Entrez               metal-binding site: CLUSTER B.           23
   Entrez               metal-binding site: CLUSTER B.           26
   Entrez               metal-binding site: CLUSTER B.           28
   Entrez               metal-binding site: CLUSTER A.           31
   Entrez               metal-binding site: CLUSTER A.           34
   Entrez               metal-binding site: CLUSTER A.           38
   Entrez               metal-binding site: CLUSTER A.           40
   Entrez               metal-binding site: CLUSTER A.           46
   Entrez               metal-binding site: CLUSTER A.           50
   Entrez               metal-binding site: CLUSTER A.           54
   Entrez               metal-binding site: CLUSTER A.           56
   Entrez               metal-binding site: CLUSTER A.           57
   PFAM                 metalthio: Metallothionein               2..58
   PRINTS               MTCRUSTACEAN1: Crustacean metallothionei 2..18
   PRINTS               MTCRUSTACEAN2: Crustacean metallothionei 20..38
   PRINTS               MTCRUSTACEAN3: Crustacean metallothionei 43..54
   PRODOM               PD000782: MT(23) MT1(12) MT2(11)         4..57
__________________


  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 2.5, P = 0.92
 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2

Query:   110 CQEGNCRGGW*C-CCSCRRSQKE*PCAEKIGEAPERSKA*CS 232
             CQEG C+ G  C C SCR S    PC +        +K  CS
Sbjct:    12 CQEGGCKAG--CQCTSCRCS----PCQKCTSGCKCATKEECS 47


to_Entrezto_Relatedto_Related >gi|127387|sp|P02805|MT1_SCYSE  METALLOTHIONEIN-I (MT-I) >gi|72171|pir||SMKD1S
            metallothionein 1 - mud crab
            Length = 58

Frame  2 hits (HSPs):           ___________________________________       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40
__________________

Annotated Domains:
   Entrez               Domain: BETA.                            1..28
   Entrez               Domain: ALPHA.                           29..58
   Entrez               metal-binding site: CLUSTER B.           4
   Entrez               metal-binding site: CLUSTER B.           5
   Entrez               metal-binding site: CLUSTER B.           9
   Entrez               metal-binding site: CLUSTER B.           11
   Entrez               metal-binding site: CLUSTER B.           16
   Entrez               metal-binding site: CLUSTER B.           20
   Entrez               metal-binding site: CLUSTER B.           22
   Entrez               metal-binding site: CLUSTER B.           25
   Entrez               metal-binding site: CLUSTER B.           27
   Entrez               metal-binding site: CLUSTER A.           30
   Entrez               metal-binding site: CLUSTER A.           33
   Entrez               metal-binding site: CLUSTER A.           37
   Entrez               metal-binding site: CLUSTER A.           39
   Entrez               metal-binding site: CLUSTER A.           45
   Entrez               metal-binding site: CLUSTER A.           49
   Entrez               metal-binding site: CLUSTER A.           53
   Entrez               metal-binding site: CLUSTER A.           55
   Entrez               metal-binding site: CLUSTER A.           56
   PFAM                 metalthio: Metallothionein               1..57
   PRINTS               MTCRUSTACEAN1: Crustacean metallothionei 1..17
   PRINTS               MTCRUSTACEAN2: Crustacean metallothionei 19..37
   PRINTS               MTCRUSTACEAN3: Crustacean metallothionei 42..53
   PRODOM               PD000782: MT(23) MT1(12) MT2(11)         3..56
__________________


  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 4.4, P = 0.99
 Identities = 19/41 (46%), Positives = 22/41 (53%), Frame = +2

Query:   110 CQEGNCRGGW*C-CCSCRRSQKE*PCAE--KIGEAPERSKA*CS 232
             C+EG C+ G  C C SCR S  E  C+   K     E SK  CS
Sbjct:    11 CKEGGCKEG--CQCTSCRCSPCE-KCSSGCKCANKEECSKT-CS 50


to_Entrezto_Relatedto_Related >gi|3643797|gb|AAC42599.1|  (AF055339) salmosin5 [Gloydius halys brevicaudus]
            Length = 190

Frame  2 hits (HSPs):                                 ______________      
                        __________________________________________________
Database sequence:     |            |             |            |          | 190
                       0           50           100          150

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 5.1, P = 0.99
 Identities = 22/54 (40%), Positives = 26/54 (48%), Frame = +2

Query:    26 YCSG*CCSIQTVVSSALWC*DW*EKEDSCQEGNCRGGW*CCCSCRRSQ-KE*PCA 187
             YC    C I      ALW  D  E EDSC E N +G +     CR+   K+ PCA
Sbjct:   115 YCYNGNCPIMYHQCYALWGADVYEAEDSCFESNKKGNY-YYGYCRKENGKKIPCA 168


to_Entrezto_Relatedto_pdb >gi|1420985|pdb|1DME|     Cd-6 Metallothionein-1 (Cd-6 Mt) (Beta Domain) (Nmr,
            Minimized Average Structure) >gi|1420988|pdb|1DMF|  Cd-6
            Metallothionein-1 (Cd-6 Mt) (Beta Domain) (Nmr, 18 Structures)
            Length = 28

Frame  2 hits (HSPs):                    _________________________________
                        __________________________________________________
Database sequence:     |                                 |                | 28
                       0                                20

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 5.7, P = 1.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Frame = +2

Query:   110 CQEGNCRGGW*C-CCSCRRS 166
             CQEG C+ G  C C SCR S
Sbjct:    11 CQEGGCKAG--CQCTSCRCS 28


to_Entrezto_Relatedto_Related >gi|6723700|emb|CAB66892.1|  (AL035264) hypothetical protein L8032.10
            [Leishmania major]
            Length = 890

Frame  3 hits (HSPs):          ____                                       
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 890
                       0      150     300      450     600      750

  Plus Strand HSPs:

 Score = 80 (28.2 bits), Expect = 7.1, P = 1.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Frame = +3

Query:   102 KTAAKKETAEEGGDAAAAAEEAKKSNHVQRKLEKRQKDRKLDAHIEE 242
             K A  ++      + AAAAE+AKK    +RK  +RQ+ R+  A  EE
Sbjct:   138 KKAQMEDAVTRAEETAAAAEDAKKRRRAERKKSRRQQRRQQQAEEEE 184


to_Entrezto_Relatedto_Related >gi|7486867|pir||T10554  hypothetical protein T12G13.110 - Arabidopsis thaliana
            >gi|5262200|emb|CAB45797.1| (AL080252) putative protein
            [Arabidopsis thaliana] >gi|7267467|emb|CAB81163.1| (AL161510)
            putative protein [Arabidopsis thaliana]
            Length = 99

Frame  3 hits (HSPs):                  _________________________          
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 99
                       0        20        40        60        80

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 8.2, P = 1.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Frame = +3

Query:    78 GVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNHVQRKLEKRQKDRKLDA 230
             GV + R+KKT +K  T E+   A+ +  E KK ++  +  E   K++ LD+
Sbjct:    32 GVYLQRRKKTISKPTTTEDEEKASQSMWEIKKKDNEMK--EGLSKNKMLDS 80


to_Entrezto_Related >gi|6322888  ref|NP_012960.1| Ykr035cp >gi|549606|sp|P36129|YK15_YEAST
            HYPOTHETICAL 23.2 KD PROTEIN IN DAL80-GAP1 INTERGENIC REGION
            >gi|539250|pir||S38107 hypothetical protein YKR035c - yeast
            (Saccharomyces cerevisiae) >gi|486471|emb|CAA82109.1| (Z28260) ORF
            YKR035c [Saccharomyces cerevisiae]
            Length = 213

Frame -1 hits (HSPs):            ___________________                      
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 213
                       0          50         100        150         200

  Minus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 9.5, P = 1.0
 Identities = 27/80 (33%), Positives = 40/80 (50%), Frame = -1

Query:   335 NP*PFQNVA--ISSATLTRSRGNASKQTPTTKLLLNVSIKLSIFLALLQFSLHMVTLFGF 162
             N  PF +    ISS+TL+ S   AS+ TP +   L +  K S   + L  S+ MV  + F
Sbjct:    41 NSMPFSSATLLISSSTLSLSTSMASEFTPISSYTLTLVSKSSNCCSNL--SIIMVICWRF 98

Query:   161 -FCSCSSITTLLCSFLLGSCLL 99
              FC+  S+    C     +CL+
Sbjct:    99 IFCNALSMPLQTCPIDADTCLI 120


to_Entrezto_Related >gi|5174762  ref|NP_005945.1| metallothionein 3 (growth inhibitory factor
            (neurotrophic)) >gi|127404|sp|P25713|MT3_HUMAN METALLOTHIONEIN-III
            (MT-III) (GROWTH INHIBITORY FACTOR) (GIF) (GIFB)
            >gi|422998|pir||B46034 metallothionein 3, brain-specific - human
            >gi|187547|gb|AAA36214.1| (M93311) metallothionein-III [Homo
            sapiens] >gi|565190|gb|AAB31396.1| (S72043) growth inhibitory
            factor, GIF=metallothionein homolog [human, brain, Peptide, 68 aa]
            [Homo sapiens] >gi|914851|emb|CAA61763.1| (X89604)
            metallothionein-III [Homo sapiens]
            Length = 68

Frame  2 hits (HSPs):               ____________________________________  
                        __________________________________________________
Database sequence:     |             |              |              |      | 68
                       0            20             40             60

  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 9.9, P = 1.0
 Identities = 20/48 (41%), Positives = 24/48 (50%), Frame = +2

Query:   104 DSCQ-EG-NCRGGW*CCCSCRRSQKE*PCAE----KIGEAPERSKA*CS 232
             DSC+ EG  C      CCSC  ++ E  CA+    K GEA E     CS
Sbjct:    18 DSCKCEGCKCTSCKKSCCSCCPAECE-KCAKDCVCKGGEAAEAEAEKCS 65


to_Entrezto_Relatedto_Related >gi|2147668|pir||S59073  metallothionein isoform IIa - blue crab
            >gi|1176449|gb|AAB35438.1| metallothionein isoform IIa, MT-IIa
            [Callinectes sapidus=blue crabs, hepatopancreas tissues, Peptide,
            57 aa]
            Length = 57

Frame  2 hits (HSPs):           ________________________________          
                        __________________________________________________
Database sequence:     |                |                 |               | 57
                       0               20                40

  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 9.9, P = 1.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2

Query:   110 CQEGNCRGGW*CCC-SCRRSQKE*PCAEKIGEAPERSKA*CS 232
             C+EG C+ G  C C SCR      PC +   E    SK  CS
Sbjct:    11 CKEGECKTG--CKCKSCRCP----PCDKCSSECKCTSKEECS 46


to_Entrezto_Relatedto_Related >gi|2497873|sp|P55950|MT2_CALSI  METALLOTHIONEIN-II (MT-II) (MT-IIB/MT-IIA)
            >gi|6449391|gb|AAF08965.1| (AF200419) cadmium-inducible
            metallothionein CdMT-II [Callinectes sapidus]
            Length = 58

Frame  2 hits (HSPs):            _______________________________          
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40
__________________

Annotated Domains:
   Entrez               Domain: BETA.                            1..29
   Entrez               Domain: ALPHA.                           30..58
   Entrez               metal-binding site: CLUSTER B.           5
   Entrez               metal-binding site: CLUSTER B.           6
   Entrez               metal-binding site: CLUSTER B.           10
   Entrez               metal-binding site: CLUSTER B.           12
   Entrez               metal-binding site: CLUSTER B.           17
   Entrez               metal-binding site: CLUSTER B.           21
   Entrez               metal-binding site: CLUSTER B.           23
   Entrez               metal-binding site: CLUSTER B.           26
   Entrez               metal-binding site: CLUSTER B.           28
   Entrez               metal-binding site: CLUSTER A.           31
   Entrez               metal-binding site: CLUSTER A.           34
   Entrez               metal-binding site: CLUSTER A.           38
   Entrez               metal-binding site: CLUSTER A.           40
   Entrez               metal-binding site: CLUSTER A.           46
   Entrez               metal-binding site: CLUSTER A.           50
   Entrez               metal-binding site: CLUSTER A.           54
   Entrez               metal-binding site: CLUSTER A.           56
   Entrez               metal-binding site: CLUSTER A.           57
   PFAM                 metalthio: Metallothionein               2..58
   PRINTS               MTCRUSTACEAN1: Crustacean metallothionei 2..18
   PRINTS               MTCRUSTACEAN2: Crustacean metallothionei 20..38
   PRINTS               MTCRUSTACEAN3: Crustacean metallothionei 43..54
   PRODOM               PD000782: MT(23) MT1(12) MT2(11)         3..57
__________________


  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 9.9, P = 1.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2

Query:   110 CQEGNCRGGW*CCC-SCRRSQKE*PCAEKIGEAPERSKA*CS 232
             C+EG C+ G  C C SCR      PC +   E    SK  CS
Sbjct:    12 CKEGECKTG--CKCKSCRCP----PCDKCSSECKCTSKEECS 47


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.98

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.318   0.133   0.387  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.354   0.152   0.698  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.340   0.148   0.449  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.331   0.141   0.432  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.358   0.153   0.577  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.339   0.141   0.494  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      124       124       10.  71 3  12 22  0.10    33
                                                    29  0.11    35
   +2      0      124       123       10.  71 3  12 22  0.10    33
                                                    29  0.11    35
   +1      0      124       123       10.  71 3  12 22  0.10    33
                                                    29  0.11    35
   -1      0      124       124       10.  71 3  12 22  0.10    33
                                                    29  0.11    35
   -2      0      124       124       10.  71 3  12 22  0.10    33
                                                    29  0.11    35
   -3      0      124       123       10.  71 3  12 22  0.10    33
                                                    29  0.11    35


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  30
  No. of states in DFA:  594 (59 KB)
  Total size of DFA:  177 KB (192 KB)
  Time to generate neighborhood:  0.02u 0.00s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  184.30u 0.98s 185.28t  Elapsed: 00:00:58
  Total cpu time:  184.37u 1.02s 185.39t  Elapsed: 00:00:58
  Start:  Wed Feb 14 20:51:22 2001   End:  Wed Feb 14 20:52:20 2001

Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000