WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker repeats found in sequence:No Repeats Found.Reference: Gish, Warren (1994-1997). unpublished. Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72.Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames.
Query= SSH5D03.SEQ(1>401) (374 letters)
Translating both strands of query sequence in all 6 reading framesDatabase: nr 505,245 sequences; 158,518,215 total letters.Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 10 Sequences : less than 10 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 3138 617 |============================================================= 6310 2521 513 |=================================================== 3980 2008 437 |=========================================== 2510 1571 398 |======================================= 1580 1173 333 |================================= 1000 840 249 |======================== 631 591 185 |================== 398 406 153 |=============== 251 253 84 |======== 158 169 55 |===== 100 114 30 |=== 63.1 84 13 |= 39.8 71 19 |= 25.1 52 18 |= 15.8 34 4 |: >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 30 <<<<<<<<<<<<<<<<< 10.0 30 6 |: 6.31 24 3 |: 3.98 21 0 | 2.51 21 2 |: 1.58 19 0 | 1.00 19 0 | 0.63 19 0 | 0.40 19 1 |: 0.25 18 0 | 0.16 18 0 | 0.10 18 1 |: 0.063 17 0 | 0.040 17 0 | 0.025 17 0 | 0.016 17 0 | 0.010 17 0 | 0.0063 17 0 | 0.0040 17 0 | 0.0025 17 1 |: Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N gi|6226702|sp|Q08069|RS8_MAIZE40S RIBOSOMAL PROTEIN S... +3 462 6.7e-43 1 gi|3264759|gb|AAC24583.1|(AF071889) 40S ribosomal pro... +3 459 1.4e-42 1 gi|1351014|sp|P49199|RS8_ORYSA40S RIBOSOMAL PROTEIN S... +3 438 2.3e-40 1 gi|3806118|gb|AAC69196.1|(AF097201) 40S ribosomal pro... +3 282 2.9e-26 2 gi|3396100|gb|AAC28863.1|(AF080430) ribosomal protein... +3 262 6.7e-25 2 gi|134017|sp|P25204|RS8_LEIMA40S RIBOSOMAL PROTEIN S8... +3 251 7.4e-24 2 gi|1245435|gb|AAA93474.1|(U50471) putative ribosomal ... +3 275 4.4e-23 1 gi|1351011|sp|P48156|RS8_CAEELPROBABLE 40S RIBOSOMAL ... +3 244 1.7e-22 2 gi|4506743ref|NP_001003.1| ribosomal protein S8 >gi|6... +3 269 1.9e-22 1 gi|7301850|gb|AAF56959.1|(AE003771) CG7808 gene produ... +3 266 3.9e-22 1 gi|7529642|emb|CAB86469.1|(AL163481) 40s ribosomal pr... +3 249 2.5e-20 1 gi|6094196|sp|O14049|RS8_SCHPO40S RIBOSOMAL PROTEIN S... +3 246 5.2e-20 1 gi|171727|gb|AAA63573.1|(J05637) unknown gene; putati... +3 242 1.4e-19 1 gi|6319399ref|NP_009481.1| Ribosomal protein S8A (S14... +3 242 1.4e-19 1 gi|3777552|gb|AAC64931.1|(AF078069) 40S ribosomal pro... +3 228 4.2e-18 1 gi|7440238|pir||T05908probable ribosomal protein S8 -... +3 163 3.2e-11 1 gi|321100|pir||A606876-1E protein - human +3 89 0.0022 1 gi|1710486|sp|P54048|RL12_METJA50S RIBOSOMAL PROTEIN ... +3 75 0.066 1 gi|2497875|sp|P55952|MT_POTPOMETALLOTHIONEIN (MT) >gi... +2 68 0.31 1 gi|2147667|pir||S59072metallothionein isoform Ia - bl... +2 61 0.92 1 gi|2497872|sp|P55949|MT1_CALSIMETALLOTHIONEIN-I (MT-I... +2 61 0.92 1 gi|127387|sp|P02805|MT1_SCYSEMETALLOTHIONEIN-I (MT-I)... +2 59 0.99 1 gi|3643797|gb|AAC42599.1|(AF055339) salmosin5 [Gloydi... +2 74 0.994 1 gi|1420985|pdb|1DME| Cd-6 Metallothionein-1 (Cd-6 M... +2 58 0.997 1 gi|6723700|emb|CAB66892.1|(AL035264) hypothetical pro... +3 80 0.9991 1 gi|7486867|pir||T10554hypothetical protein T12G13.110... +3 65 0.9997 1 gi|6322888ref|NP_012960.1| Ykr035cp >gi|549606|sp|P36... -1 73 0.99992 1 gi|5174762ref|NP_005945.1| metallothionein 3 (growth ... +2 56 0.99995 1 gi|2147668|pir||S59073metallothionein isoform IIa - b... +2 56 0.99995 1 gi|2497873|sp|P55950|MT2_CALSIMETALLOTHIONEIN-II (MT-... +2 56 0.99995 1 Locally-aligned regions (HSPs) with respect to query sequence: Locus_ID Frame 3 Hits gi|6226702 |__________________________________________________ gi|3264759 |__________________________________________________ gi|1351014 |__________________________________________________ gi|3806118 |___________________________________________ gi|3396100 |___________________________________________ gi|134017 |__________________________________________________ gi|1245435 |_________________________________________________ gi|1351011 |___________________________________________ gi|4506743 |__________________________________________________ gi|7301850 |_________________________________________________ gi|7529642 |_________________________________________________ gi|6094196 |_________________________________________________ gi|171727 |___________________________________________ gi|6319399 |___________________________________________ gi|3777552 |__________________________________________________ gi|7440238 |______________ gi|321100 |___________ gi|1710486 |__________________________________ gi|6723700 | ____________________ gi|7486867 | _____________________ __________________________________________________ Query sequence: | | | | 125 0 50 100 Locus_ID Frame 2 Hits gi|3806118 | _______ gi|3396100 | _______ gi|134017 | ______ gi|1351011 | _______ gi|2497875 | _________________ gi|2147667 | _________________ gi|2497872 | _________________ gi|127387 | _________________ gi|3643797 | ______________________ gi|1420985 | _________ gi|5174762 | __________________ gi|2147668 | _________________ gi|2497873 | _________________ Prosite Hits: _____ ____ __________________________________________________ Query sequence: | | | | 125 0 50 100 __________________ Prosite hits: TYR_PHOSPHO_SITE Tyrosine kinase phosphorylation site. 108..115 PROKAR_LIPOPROTEIN Prokaryotic membrane lipoprotein lipid a 79..89 __________________ Locus_ID Frame -1 Hits gi|6322888 | __________________________________________________ Query sequence: | | | | 125 0 50 100
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>gi|6226702|sp|Q08069|RS8_MAIZE 40S RIBOSOMAL PROTEIN S8 >gi|7440237|pir||T04088 ribosomal protein S8 - maize >gi|1498053|gb|AAB06330.1| (U64436) ribosomal protein S8 [Zea mays] Length = 221 Frame 3 hits (HSPs): ____________________________ Annotated Domains: ________________________________________________ __________________________________________________ Database sequence: | | | | | | 221 0 50 100 150 200 __________________ Annotated Domains: PRODOM PD005658: RS8(7) RS8E(3) 9..110 PRODOM PD009322: RS8(7) 113..214 PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30 __________________ Plus Strand HSPs: Score = 462 (162.6 bits), Expect = 6.7e-43, P = 6.7e-43 Identities = 96/124 (77%), Positives = 103/124 (83%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKT-AAKKETAEEGGDAAAAAEEAKKSN 179 TQTLVKSAIVQVDAAPFKQWYL HYGV+IGRKKKT AAKK+ AE G + AAAEE KKSN Sbjct: 94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAE-GQEVEAAAEETKKSN 152 Query: 180 HVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNS 359 HV RKLEKR++ R LD HIEEQFG GRLLACISSRPGQCGRADGYILE + F K Sbjct: 153 HVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKEL-EFYMKKL 211 Query: 360 QKKKG 374 Q+KKG Sbjct: 212 QRKKG 216 >gi|3264759|gb|AAC24583.1| (AF071889) 40S ribosomal protein S8 [Prunus armeniaca] Length = 221 Frame 3 hits (HSPs): ____________________________ __________________________________________________ Database sequence: | | | | | | 221 0 50 100 150 200 Plus Strand HSPs: Score = 459 (161.6 bits), Expect = 1.4e-42, P = 1.4e-42 Identities = 97/124 (78%), Positives = 103/124 (83%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAA-KKETAEEGGDAAAAAEEAKKSN 179 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAA KK+T EEG A EEAKKSN Sbjct: 94 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPEEG---EATTEEAKKSN 150 Query: 180 HVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNS 359 HV KLEKRQ+ R LDAHIEEQFGGG+LLACISSRPGQCG+ADG ILE + F K Sbjct: 151 HVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKEL-EFYMKKL 209 Query: 360 QKKKG 374 Q+KKG Sbjct: 210 QRKKG 214 >gi|1351014|sp|P49199|RS8_ORYSA 40S RIBOSOMAL PROTEIN S8 >gi|7440236|pir||T04082 probable ribosomal protein S8 - rice >gi|968902|dbj|BAA07207.1| (D38010) ribosomal protein S8 [Oryza sativa] Length = 220 Frame 3 hits (HSPs): ____________________________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | | 220 0 50 100 150 200 __________________ Annotated Domains: DOMO DM01695: RATRIBOSOMALPROTEINS8 1..198 PFAM Ribosomal_S8e: Ribosomal protein S8e 3..128 PRODOM PD005658: RS8(7) RS8E(3) 9..110 PRODOM PD009322: RS8(7) 113..213 PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30 __________________ Plus Strand HSPs: Score = 438 (154.2 bits), Expect = 2.3e-40, P = 2.3e-40 Identities = 92/124 (74%), Positives = 96/124 (77%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 TQTLVKSAIVQVDAAPFKQWYL HYGV+IGRKKK G DA A EEAKKSNH Sbjct: 94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKEPPHPRGCC-GQDAEATTEEAKKSNH 152 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362 V RKLEKRQ+ R LDAHIEEQFG GRLLACISSRPGQCGRADGYILE + F K Q Sbjct: 153 VVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKEL-EFYMKKLQ 211 Query: 363 KKKG 374 +KKG Sbjct: 212 RKKG 215 >gi|3806118|gb|AAC69196.1| (AF097201) 40S ribosomal protein S8 [Schizophyllum commune] Length = 149 Frame 3 hits (HSPs): _________________________________ Frame 2 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | 149 0 50 100 Plus Strand HSPs: Score = 282 (99.3 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26 Identities = 62/107 (57%), Positives = 70/107 (65%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T T VKSAIVQVDA PF+QWY HY + +K K A A AE+ K SNH Sbjct: 31 TNTFVKSAIVQVDATPFRQWYEAHYAQPVTKKGKQHAP----------APEAEDKKLSNH 80 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323 VQRKL +R+KD K+D +E QF GRL A ISSRPGQ GRADGYILE Sbjct: 81 VQRKLTERKKDAKIDPLLESQFAAGRLYAAISSRPGQSGRADGYILE 127 Score = 38 (13.4 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26 Identities = 7/15 (46%), Positives = 12/15 (80%), Frame = +2 Query: 329 KDLEFYMKKLPKEKR 373 ++LEFY++KL K+ Sbjct: 129 QELEFYVRKLRAGKQ 143 >gi|3396100|gb|AAC28863.1| (AF080430) ribosomal protein S8 [Apis mellifera] Length = 207 Frame 3 hits (HSPs): _________________________ Frame 2 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | | | 207 0 50 100 150 200 Plus Strand HSPs: Score = 262 (92.2 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25 Identities = 56/107 (52%), Positives = 71/107 (66%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T+TLVK+AIV +DA PF+QWY HY + +GRK+ AK AEE K+S Sbjct: 92 TKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKR--GAKLTEAEE------EVLNKKRSKK 143 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323 + K + RQ+ K++ +EEQF GR+LACISSRPGQCGR DGYILE Sbjct: 144 AEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILE 190 Score = 45 (15.8 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25 Identities = 7/14 (50%), Positives = 12/14 (85%), Frame = +2 Query: 329 KDLEFYMKKLPKEK 370 K+LEFYM+++ +K Sbjct: 192 KELEFYMRRIKSKK 205 >gi|134017|sp|P25204|RS8_LEIMA 40S RIBOSOMAL PROTEIN S8 >gi|102061|pir||S20063 ribosomal protein S8 (upstream gene) - Leishmania major >gi|283415|pir||S20064 ribosomal protein S8.e, cytosolic - Leishmania major >gi|9578|emb|CAA44714.1| (X62942) homologous to rat ribosomal protein S8 [Leishmania major] >gi|9579|emb|CAA44715.1| (X62942) homologous to rat ribosomal protein S8 [Leishmania major] Length = 220 Frame 3 hits (HSPs): ______________________________ Frame 2 hits (HSPs): ____ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | 220 0 50 100 150 200 __________________ Annotated Domains: DOMO DM01695: RATRIBOSOMALPROTEINS8 1..203 PFAM Ribosomal_S8e: Ribosomal protein S8e 3..127 PRODOM PD005658: RS8(7) RS8E(3) 9..109 PRODOM PD009322: RS8(7) 112..218 PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30 __________________ Plus Strand HSPs: Score = 251 (88.4 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24 Identities = 57/127 (44%), Positives = 83/127 (65%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGG--DAAAAAEEA--- 167 T+TLVK+ IV VDAAPFK+WY +HYG+++ KK+ AE+ G A AAA++ Sbjct: 93 TKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKSAHAAADKYDVN 152 Query: 168 KKSNHVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT 347 K S +QR+ +R+++ +++ I +Q GR+LA I+SRPGQ GRADG +LE + F Sbjct: 153 KASPKLQREWTRRRRNHRVEKAIADQLREGRVLARITSRPGQSGRADGILLEGAEL-QFY 211 Query: 348 *KNSQKKK 371 K +KKK Sbjct: 212 LKRLEKKK 219 Score = 46 (16.2 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24 Identities = 7/14 (50%), Positives = 13/14 (92%), Frame = +2 Query: 332 DLEFYMKKLPKEKR 373 +L+FY+K+L K+K+ Sbjct: 207 ELQFYLKRLEKKKK 220 >gi|1245435|gb|AAA93474.1| (U50471) putative ribosomal protein S8 [Anopheles gambiae] Length = 135 Frame 3 hits (HSPs): __________________________________________ __________________________________________________ Database sequence: | | | | 135 0 50 100 Plus Strand HSPs: Score = 275 (96.8 bits), Expect = 4.4e-23, P = 4.4e-23 Identities = 60/122 (49%), Positives = 80/122 (65%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T+TLVK+AI+ +DA+PF+QWY HY + +G+K++ A G+ +++ KSN Sbjct: 22 TKTLVKNAIIVIDASPFRQWYESHYLLPLGKKRELKA--------GEEDVLSKKRTKSN- 72 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362 RK KRQK+ K+D +EEQF GRLLACISSRPGQ GRADGYILE + + K Sbjct: 73 -LRKYVKRQKNAKIDPAVEEQFNAGRLLACISSRPGQVGRADGYILEGKELEFYLKKIKN 131 Query: 363 KK 368 KK Sbjct: 132 KK 133 >gi|1351011|sp|P48156|RS8_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S8 >gi|7440242|pir||T16343 hypothetical protein F42C5.8 - Caenorhabditis elegans >gi|1065942|gb|AAA81485.1| (U40799) coded for by C. elegans cDNA yk51c6.5; coded for by C. elegans cDNA yk107e3.5; coded for by C. elegans cDNA yk103h6.5; coded for by C. elegans cDNA yk55e5.5; coded for by C. elegans cDNA yk78a4.5; coded for by C. elegans cDNA yk107e3.3; coded > Length = 208 Frame 3 hits (HSPs): ________________________ Frame 2 hits (HSPs): ____ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | 208 0 50 100 150 200 __________________ Annotated Domains: DOMO DM01695: RATRIBOSOMALPROTEINS8 1..190 PFAM Ribosomal_S8e: Ribosomal protein S8e 3..127 PRODOM PD005658: RS8(7) RS8E(3) 9..109 PRODOM PD009322: RS8(7) 112..205 PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30 __________________ Plus Strand HSPs: Score = 244 (85.9 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22 Identities = 56/107 (52%), Positives = 70/107 (65%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T+TLVK AI+ VDAAPF+QWY HY + + RKK AK +EE A K+S+H Sbjct: 93 TKTLVKGAIISVDAAPFRQWYEAHYALPLARKKN--AK--LSEEDN----AILNKKRSHH 144 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323 +K +RQK +DA + EQF GRLLA ISS PGQ G+A+GYILE Sbjct: 145 TMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILE 191 Score = 40 (14.1 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22 Identities = 6/14 (42%), Positives = 12/14 (85%), Frame = +2 Query: 329 KDLEFYMKKLPKEK 370 K+L+FY++K+ +K Sbjct: 193 KELDFYLRKIRAKK 206 >gi|4506743 ref|NP_001003.1| ribosomal protein S8 >gi|6677813 ref|NP_033124.1|| ribosomal protein S8 >gi|134009|sp|P09058|RS8_HUMAN 40S RIBOSOMAL PROTEIN S8 >gi|70907|pir||R3RT8 ribosomal protein S8 - rat >gi|107619|pir||S25022 ribosomal protein S8, cytosolic - human >gi|625511|pir||S42110 ribosomal protein S8 - mouse >gi|36150|emb|CAA47670.1| (X67247) ribosomal protein S8 [Homo sapiens] >gi|57139|emb|CAA29732.1| (X06423) ribosomal protein S8 (AA 1-208) [Rattus norvegicus] >gi|313298|emb|CAA52050.1| (X73829) ribosomal protein S8 [Mus musculus] Length = 208 Frame 3 hits (HSPs): ____________________________ __________________________________________________ Database sequence: | | | | | | 208 0 50 100 150 200 Plus Strand HSPs: Score = 269 (94.7 bits), Expect = 1.9e-22, P = 1.9e-22 Identities = 56/124 (45%), Positives = 81/124 (65%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T+TLVK+ IV +D+ P++QWY HY + +GRKK K T EE K+S Sbjct: 93 TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKK---GAKLTPEE-----EEILNKKRSKK 144 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362 +Q+K ++R+K+ K+ + +EEQF G+LLACI+SRPGQCGRADGY+LE + F + + Sbjct: 145 IQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKEL-EFYLRKIK 203 Query: 363 KKKG 374 +KG Sbjct: 204 ARKG 207 >gi|7301850|gb|AAF56959.1| (AE003771) CG7808 gene product [Drosophila melanogaster] Length = 219 Frame 3 hits (HSPs): ___________________________ __________________________________________________ Database sequence: | | | | | | 219 0 50 100 150 200 Plus Strand HSPs: Score = 266 (93.6 bits), Expect = 3.9e-22, P = 3.9e-22 Identities = 57/122 (46%), Positives = 77/122 (63%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T+TLVK++IV +DA PF+QWY HY + +GRK+ K E+ D K+S Sbjct: 104 TKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNP--KHAQKEDENDVLTK----KRSEK 157 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362 V +K +RQK K++ +E+QF GR+LACISSRPGQCGR+DGYILE + + K Sbjct: 158 VMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIKS 217 Query: 363 KK 368 KK Sbjct: 218 KK 219 >gi|7529642|emb|CAB86469.1| (AL163481) 40s ribosomal protein s8 [Schizosaccharomyces pombe] Length = 200 Frame 3 hits (HSPs): ___________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 Plus Strand HSPs: Score = 249 (87.7 bits), Expect = 2.5e-20, P = 2.5e-20 Identities = 59/122 (48%), Positives = 71/122 (58%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T TL KSAIVQ+DAAPF+ WY HYG+ +G K KK TA KS H Sbjct: 93 TNTLTKSAIVQIDAAPFRVWYETHYGILMGSK----GKKATATP----------TPKSKH 138 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362 VQRK R D K+D+ +E QF GRL A +SSRPGQ GR DGYILE + + + + Sbjct: 139 VQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAP 198 Query: 363 KK 368 KK Sbjct: 199 KK 200 >gi|6094196|sp|O14049|RS8_SCHPO 40S RIBOSOMAL PROTEIN S8 >gi|7489959|pir||T38527 40s ribosomal protein - fission yeast (Schizosaccharomyces pombe) >gi|2414627|emb|CAB16376.1| (Z99259) 40s ribosomal protein s8. [Schizosaccharomyces pombe] Length = 200 Frame 3 hits (HSPs): ___________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 __________________ Annotated Domains: PFAM Ribosomal_S8e: Ribosomal protein S8e 3..127 PRODOM PD005658: RS8(7) RS8E(3) 8..110 PRODOM PD009322: RS8(7) 112..199 PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30 __________________ Plus Strand HSPs: Score = 246 (86.6 bits), Expect = 5.2e-20, P = 5.2e-20 Identities = 58/122 (47%), Positives = 71/122 (58%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T TL KSAIVQ+DAAPF+ WY HYG+ +G K KK T+ KS H Sbjct: 93 TNTLTKSAIVQIDAAPFRVWYETHYGILMGSK----GKKATSTPN----------PKSKH 138 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNSQ 362 VQRK R D K+D+ +E QF GRL A +SSRPGQ GR DGYILE + + + + Sbjct: 139 VQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAP 198 Query: 363 KK 368 KK Sbjct: 199 KK 200 >gi|171727|gb|AAA63573.1| (J05637) unknown gene; putative [Saccharomyces cerevisiae] Length = 131 Frame 3 hits (HSPs): ____________________________________ __________________________________________________ Database sequence: | | | | 131 0 50 100 Plus Strand HSPs: Score = 242 (85.2 bits), Expect = 1.4e-19, P = 1.4e-19 Identities = 52/107 (48%), Positives = 65/107 (60%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T TL K+AIVQ+DA PF+QW+ HYG +G+KK K+E E KS + Sbjct: 24 TNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNV--KEE------------ETVAKSKN 69 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323 +RK R K+++ +E QF GRL ACISSRPGQ GR DGYILE Sbjct: 70 AERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILE 116 >gi|6319399 ref|NP_009481.1| Ribosomal protein S8A (S14A) (rp19) (YS9); Rps8ap >gi|6320949 ref|NP_011028.1|| Ribosomal protein S8B (S14B) (rp19) (YS9); Rps8bp >gi|464725|sp|P05754|RS8_YEAST 40S RIBOSOMAL PROTEIN S8 (S14) (YS9) (RP19) >gi|625512|pir||S45591 ribosomal protein S8.e, cytosolic - yeast (Saccharomyces cerevisiae) >gi|407523|emb|CAA81525.1| (Z26879) ribosomal protein S8 [Saccharomyces cerevisiae] >gi|536115|emb|CAA84893.1| (Z35833) ORF YBL072c [Saccharomyces cerevisiae] >gi|603340|gb|AAB64657.1| (U18839) Rps8bp: Ribosome protein, small subunit [Saccharomyces cerevisiae] Length = 200 Frame 3 hits (HSPs): ________________________ __________________________________________________ Database sequence: | | | | | 200 0 50 100 150 Plus Strand HSPs: Score = 242 (85.2 bits), Expect = 1.4e-19, P = 1.4e-19 Identities = 52/107 (48%), Positives = 65/107 (60%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T TL K+AIVQ+DA PF+QW+ HYG +G+KK K+E E KS + Sbjct: 93 TNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNV--KEE------------ETVAKSKN 138 Query: 183 VQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILE 323 +RK R K+++ +E QF GRL ACISSRPGQ GR DGYILE Sbjct: 139 AERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILE 185 >gi|3777552|gb|AAC64931.1| (AF078069) 40S ribosomal protein S8 [Griffithsia japonica] Length = 204 Frame 3 hits (HSPs): ___________________________ __________________________________________________ Database sequence: | | | | | | 204 0 50 100 150 200 Plus Strand HSPs: Score = 228 (80.3 bits), Expect = 4.2e-18, P = 4.2e-18 Identities = 59/123 (47%), Positives = 72/123 (58%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNH 182 T T VK I+Q+DA PF+Q+Y HYG++IG+KK GD EE+K S Sbjct: 93 TNTFVKGCIIQIDATPFRQYYHNHYGIDIGKKK-----------AGD-----EESKFSKR 136 Query: 183 VQRKLEKRQKDR-KLDAHIEEQFGGGRLLACISSRPGQCGRADGYILERLRIWSFT*KNS 359 K EKR + R LD I+E F GRL A I+SRPGQ GRADGY+LE + F K Sbjct: 137 HAGKQEKRCQTRLPLDEGIKELFQSGRLYASIASRPGQSGRADGYLLEGKEL-EFYAKAM 195 Query: 360 QKKK 371 QKKK Sbjct: 196 QKKK 199 >gi|7440238|pir||T05908 probable ribosomal protein S8 - barley (fragment) >gi|3355616|emb|CAA03954.1| (AJ000228) ribosomal protein S8 [Hordeum vulgare] Length = 126 Frame 3 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | 126 0 50 100 Plus Strand HSPs: Score = 163 (57.4 bits), Expect = 3.2e-11, P = 3.2e-11 Identities = 31/33 (93%), Positives = 32/33 (96%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKK 101 TQTLVK+AIVQVDAAPFKQWYL HYGVEIGRKK Sbjct: 94 TQTLVKNAIVQVDAAPFKQWYLTHYGVEIGRKK 126 >gi|321100|pir||A60687 6-1E protein - human Length = 128 Frame 3 hits (HSPs): ____________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | 128 0 50 100 __________________ Annotated Domains: DOMO DM01695: RATRIBOSOMALPROTEINS8 1..129 PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30 __________________ Plus Strand HSPs: Score = 89 (31.3 bits), Expect = 0.0022, P = 0.0022 Identities = 14/27 (51%), Positives = 21/27 (77%), Frame = +3 Query: 3 TQTLVKSAIVQVDAAPFKQWYLQHYGV 83 T+TLVK+ IV +D+ P++QWY HY + Sbjct: 93 TKTLVKNCIVLIDSTPYRQWYESHYAL 119 >gi|1710486|sp|P54048|RL12_METJA 50S RIBOSOMAL PROTEIN L12P >gi|2119124|pir||D64363 ribosomal protein L12 - Methanococcus jannaschii >gi|1499306|gb|AAB98498.1| (U67500) LSU ribosomal protein L12A (P1) [Methanococcus jannaschii] Length = 102 Frame 3 hits (HSPs): ________________________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | | 102 0 20 40 60 80 100 __________________ Annotated Domains: DOMO DM00632: RATACIDICRIBOSOMALPROTEINP1 1..101 PFAM 60s_ribosomal: 60s Acidic ribosomal prot 1..90 PRODOM PD006531: RL12(10) O57705(1) 1..49 __________________ Plus Strand HSPs: Score = 75 (26.4 bits), Expect = 0.068, P = 0.066 Identities = 26/82 (31%), Positives = 38/82 (46%), Frame = +3 Query: 6 QTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNHV 185 + ++ +A V+VD A K GV+I AA A A AAA E KK Sbjct: 23 KAVLSAAGVEVDDARVKALVAGLEGVDIEEAIANAAMPVAAAPAAAAPAAAAEEKKEE-- 80 Query: 186 QRKLEKRQKDRKLDAHIEEQFG 251 ++K EK+++D A + FG Sbjct: 81 EKKEEKKEEDTAAVAGLAALFG 102 >gi|2497875|sp|P55952|MT_POTPO METALLOTHIONEIN (MT) >gi|1935922|gb|AAB52227.1| metallothionein 1, MT 1=6.157 kda inducible sulphur-rich metal-binding protein [Potamon potamios=semi-terrestrial crabs, midgut gland tissue, Peptide, 58 aa] Length = 58 Frame 2 hits (HSPs): _______________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | 58 0 20 40 __________________ Annotated Domains: Entrez Domain: BETA. 1..29 Entrez Domain: ALPHA. 30..58 Entrez metal-binding site: CLUSTER B. 4 Entrez metal-binding site: CLUSTER B. 5 Entrez metal-binding site: CLUSTER B. 10 Entrez metal-binding site: CLUSTER B. 12 Entrez metal-binding site: CLUSTER B. 17 Entrez metal-binding site: CLUSTER B. 21 Entrez metal-binding site: CLUSTER B. 23 Entrez metal-binding site: CLUSTER B. 26 Entrez metal-binding site: CLUSTER B. 28 Entrez metal-binding site: CLUSTER A. 31 Entrez metal-binding site: CLUSTER A. 34 Entrez metal-binding site: CLUSTER A. 38 Entrez metal-binding site: CLUSTER A. 40 Entrez metal-binding site: CLUSTER A. 46 Entrez metal-binding site: CLUSTER A. 50 Entrez metal-binding site: CLUSTER A. 54 Entrez metal-binding site: CLUSTER A. 56 Entrez metal-binding site: CLUSTER A. 57 PFAM metalthio: Metallothionein 1..58 PRINTS MTCRUSTACEAN1: Crustacean metallothionei 2..18 PRINTS MTCRUSTACEAN2: Crustacean metallothionei 20..38 PRINTS MTCRUSTACEAN3: Crustacean metallothionei 43..54 PRODOM PD000782: MT(23) MT1(12) MT2(11) 2..57 PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 28..39 __________________ Plus Strand HSPs: Score = 68 (23.9 bits), Expect = 0.38, P = 0.31 Identities = 17/41 (41%), Positives = 22/41 (53%), Frame = +2 Query: 110 CQEGNCRGGW*C-CCSCRRSQKE*PCAEKIGEAPERSKA*CS 232 C+EG C+ G C C SCR S PC + E +SK C+ Sbjct: 12 CEEGKCKAG--CKCTSCRCS----PCEKCTSECECKSKEECA 47 >gi|2147667|pir||S59072 metallothionein isoform Ia - blue crab >gi|1176448|gb|AAB35437.1| metallothionein isoform Ia, MT-Ia [Callinectes sapidus=blue crabs, hepatopancreas tissues, Peptide, 58 aa] Length = 58 Frame 2 hits (HSPs): _______________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | 58 0 20 40 __________________ Annotated Domains: DOMO DM08543: 1..58 __________________ Plus Strand HSPs: Score = 61 (21.5 bits), Expect = 2.5, P = 0.92 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2 Query: 110 CQEGNCRGGW*C-CCSCRRSQKE*PCAEKIGEAPERSKA*CS 232 CQEG C+ G C C SCR S PC + +K CS Sbjct: 11 CQEGGCKAG--CQCTSCRCS----PCQKCTSGCKCATKEECS 46 >gi|2497872|sp|P55949|MT1_CALSI METALLOTHIONEIN-I (MT-I) (MT-IB/MT-IA) >gi|6449389|gb|AAF08964.1| (AF200418) cadmium-inducible metallothionein CdMT-I [Callinectes sapidus] Length = 59 Frame 2 hits (HSPs): ______________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | 59 0 20 40 __________________ Annotated Domains: Entrez Domain: BETA. 1..29 Entrez Domain: ALPHA. 30..59 Entrez metal-binding site: CLUSTER B. 5 Entrez metal-binding site: CLUSTER B. 6 Entrez metal-binding site: CLUSTER B. 10 Entrez metal-binding site: CLUSTER B. 12 Entrez metal-binding site: CLUSTER B. 17 Entrez metal-binding site: CLUSTER B. 21 Entrez metal-binding site: CLUSTER B. 23 Entrez metal-binding site: CLUSTER B. 26 Entrez metal-binding site: CLUSTER B. 28 Entrez metal-binding site: CLUSTER A. 31 Entrez metal-binding site: CLUSTER A. 34 Entrez metal-binding site: CLUSTER A. 38 Entrez metal-binding site: CLUSTER A. 40 Entrez metal-binding site: CLUSTER A. 46 Entrez metal-binding site: CLUSTER A. 50 Entrez metal-binding site: CLUSTER A. 54 Entrez metal-binding site: CLUSTER A. 56 Entrez metal-binding site: CLUSTER A. 57 PFAM metalthio: Metallothionein 2..58 PRINTS MTCRUSTACEAN1: Crustacean metallothionei 2..18 PRINTS MTCRUSTACEAN2: Crustacean metallothionei 20..38 PRINTS MTCRUSTACEAN3: Crustacean metallothionei 43..54 PRODOM PD000782: MT(23) MT1(12) MT2(11) 4..57 __________________ Plus Strand HSPs: Score = 61 (21.5 bits), Expect = 2.5, P = 0.92 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2 Query: 110 CQEGNCRGGW*C-CCSCRRSQKE*PCAEKIGEAPERSKA*CS 232 CQEG C+ G C C SCR S PC + +K CS Sbjct: 12 CQEGGCKAG--CQCTSCRCS----PCQKCTSGCKCATKEECS 47 >gi|127387|sp|P02805|MT1_SCYSE METALLOTHIONEIN-I (MT-I) >gi|72171|pir||SMKD1S metallothionein 1 - mud crab Length = 58 Frame 2 hits (HSPs): ___________________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | 58 0 20 40 __________________ Annotated Domains: Entrez Domain: BETA. 1..28 Entrez Domain: ALPHA. 29..58 Entrez metal-binding site: CLUSTER B. 4 Entrez metal-binding site: CLUSTER B. 5 Entrez metal-binding site: CLUSTER B. 9 Entrez metal-binding site: CLUSTER B. 11 Entrez metal-binding site: CLUSTER B. 16 Entrez metal-binding site: CLUSTER B. 20 Entrez metal-binding site: CLUSTER B. 22 Entrez metal-binding site: CLUSTER B. 25 Entrez metal-binding site: CLUSTER B. 27 Entrez metal-binding site: CLUSTER A. 30 Entrez metal-binding site: CLUSTER A. 33 Entrez metal-binding site: CLUSTER A. 37 Entrez metal-binding site: CLUSTER A. 39 Entrez metal-binding site: CLUSTER A. 45 Entrez metal-binding site: CLUSTER A. 49 Entrez metal-binding site: CLUSTER A. 53 Entrez metal-binding site: CLUSTER A. 55 Entrez metal-binding site: CLUSTER A. 56 PFAM metalthio: Metallothionein 1..57 PRINTS MTCRUSTACEAN1: Crustacean metallothionei 1..17 PRINTS MTCRUSTACEAN2: Crustacean metallothionei 19..37 PRINTS MTCRUSTACEAN3: Crustacean metallothionei 42..53 PRODOM PD000782: MT(23) MT1(12) MT2(11) 3..56 __________________ Plus Strand HSPs: Score = 59 (20.8 bits), Expect = 4.4, P = 0.99 Identities = 19/41 (46%), Positives = 22/41 (53%), Frame = +2 Query: 110 CQEGNCRGGW*C-CCSCRRSQKE*PCAE--KIGEAPERSKA*CS 232 C+EG C+ G C C SCR S E C+ K E SK CS Sbjct: 11 CKEGGCKEG--CQCTSCRCSPCE-KCSSGCKCANKEECSKT-CS 50 >gi|3643797|gb|AAC42599.1| (AF055339) salmosin5 [Gloydius halys brevicaudus] Length = 190 Frame 2 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | | 190 0 50 100 150 Plus Strand HSPs: Score = 74 (26.0 bits), Expect = 5.1, P = 0.99 Identities = 22/54 (40%), Positives = 26/54 (48%), Frame = +2 Query: 26 YCSG*CCSIQTVVSSALWC*DW*EKEDSCQEGNCRGGW*CCCSCRRSQ-KE*PCA 187 YC C I ALW D E EDSC E N +G + CR+ K+ PCA Sbjct: 115 YCYNGNCPIMYHQCYALWGADVYEAEDSCFESNKKGNY-YYGYCRKENGKKIPCA 168 >gi|1420985|pdb|1DME| Cd-6 Metallothionein-1 (Cd-6 Mt) (Beta Domain) (Nmr, Minimized Average Structure) >gi|1420988|pdb|1DMF| Cd-6 Metallothionein-1 (Cd-6 Mt) (Beta Domain) (Nmr, 18 Structures) Length = 28 Frame 2 hits (HSPs): _________________________________ __________________________________________________ Database sequence: | | | 28 0 20 Plus Strand HSPs: Score = 58 (20.4 bits), Expect = 5.7, P = 1.0 Identities = 12/19 (63%), Positives = 13/19 (68%), Frame = +2 Query: 110 CQEGNCRGGW*C-CCSCRRS 166 CQEG C+ G C C SCR S Sbjct: 11 CQEGGCKAG--CQCTSCRCS 28 >gi|6723700|emb|CAB66892.1| (AL035264) hypothetical protein L8032.10 [Leishmania major] Length = 890 Frame 3 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | | | | 890 0 150 300 450 600 750 Plus Strand HSPs: Score = 80 (28.2 bits), Expect = 7.1, P = 1.0 Identities = 18/47 (38%), Positives = 26/47 (55%), Frame = +3 Query: 102 KTAAKKETAEEGGDAAAAAEEAKKSNHVQRKLEKRQKDRKLDAHIEE 242 K A ++ + AAAAE+AKK +RK +RQ+ R+ A EE Sbjct: 138 KKAQMEDAVTRAEETAAAAEDAKKRRRAERKKSRRQQRRQQQAEEEE 184 >gi|7486867|pir||T10554 hypothetical protein T12G13.110 - Arabidopsis thaliana >gi|5262200|emb|CAB45797.1| (AL080252) putative protein [Arabidopsis thaliana] >gi|7267467|emb|CAB81163.1| (AL161510) putative protein [Arabidopsis thaliana] Length = 99 Frame 3 hits (HSPs): _________________________ __________________________________________________ Database sequence: | | | | | | 99 0 20 40 60 80 Plus Strand HSPs: Score = 65 (22.9 bits), Expect = 8.2, P = 1.0 Identities = 17/51 (33%), Positives = 29/51 (56%), Frame = +3 Query: 78 GVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNHVQRKLEKRQKDRKLDA 230 GV + R+KKT +K T E+ A+ + E KK ++ + E K++ LD+ Sbjct: 32 GVYLQRRKKTISKPTTTEDEEKASQSMWEIKKKDNEMK--EGLSKNKMLDS 80 >gi|6322888 ref|NP_012960.1| Ykr035cp >gi|549606|sp|P36129|YK15_YEAST HYPOTHETICAL 23.2 KD PROTEIN IN DAL80-GAP1 INTERGENIC REGION >gi|539250|pir||S38107 hypothetical protein YKR035c - yeast (Saccharomyces cerevisiae) >gi|486471|emb|CAA82109.1| (Z28260) ORF YKR035c [Saccharomyces cerevisiae] Length = 213 Frame -1 hits (HSPs): ___________________ __________________________________________________ Database sequence: | | | | | | 213 0 50 100 150 200 Minus Strand HSPs: Score = 73 (25.7 bits), Expect = 9.5, P = 1.0 Identities = 27/80 (33%), Positives = 40/80 (50%), Frame = -1 Query: 335 NP*PFQNVA--ISSATLTRSRGNASKQTPTTKLLLNVSIKLSIFLALLQFSLHMVTLFGF 162 N PF + ISS+TL+ S AS+ TP + L + K S + L S+ MV + F Sbjct: 41 NSMPFSSATLLISSSTLSLSTSMASEFTPISSYTLTLVSKSSNCCSNL--SIIMVICWRF 98 Query: 161 -FCSCSSITTLLCSFLLGSCLL 99 FC+ S+ C +CL+ Sbjct: 99 IFCNALSMPLQTCPIDADTCLI 120 >gi|5174762 ref|NP_005945.1| metallothionein 3 (growth inhibitory factor (neurotrophic)) >gi|127404|sp|P25713|MT3_HUMAN METALLOTHIONEIN-III (MT-III) (GROWTH INHIBITORY FACTOR) (GIF) (GIFB) >gi|422998|pir||B46034 metallothionein 3, brain-specific - human >gi|187547|gb|AAA36214.1| (M93311) metallothionein-III [Homo sapiens] >gi|565190|gb|AAB31396.1| (S72043) growth inhibitory factor, GIF=metallothionein homolog [human, brain, Peptide, 68 aa] [Homo sapiens] >gi|914851|emb|CAA61763.1| (X89604) metallothionein-III [Homo sapiens] Length = 68 Frame 2 hits (HSPs): ____________________________________ __________________________________________________ Database sequence: | | | | | 68 0 20 40 60 Plus Strand HSPs: Score = 56 (19.7 bits), Expect = 9.9, P = 1.0 Identities = 20/48 (41%), Positives = 24/48 (50%), Frame = +2 Query: 104 DSCQ-EG-NCRGGW*CCCSCRRSQKE*PCAE----KIGEAPERSKA*CS 232 DSC+ EG C CCSC ++ E CA+ K GEA E CS Sbjct: 18 DSCKCEGCKCTSCKKSCCSCCPAECE-KCAKDCVCKGGEAAEAEAEKCS 65 >gi|2147668|pir||S59073 metallothionein isoform IIa - blue crab >gi|1176449|gb|AAB35438.1| metallothionein isoform IIa, MT-IIa [Callinectes sapidus=blue crabs, hepatopancreas tissues, Peptide, 57 aa] Length = 57 Frame 2 hits (HSPs): ________________________________ __________________________________________________ Database sequence: | | | | 57 0 20 40 Plus Strand HSPs: Score = 56 (19.7 bits), Expect = 9.9, P = 1.0 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2 Query: 110 CQEGNCRGGW*CCC-SCRRSQKE*PCAEKIGEAPERSKA*CS 232 C+EG C+ G C C SCR PC + E SK CS Sbjct: 11 CKEGECKTG--CKCKSCRCP----PCDKCSSECKCTSKEECS 46 >gi|2497873|sp|P55950|MT2_CALSI METALLOTHIONEIN-II (MT-II) (MT-IIB/MT-IIA) >gi|6449391|gb|AAF08965.1| (AF200419) cadmium-inducible metallothionein CdMT-II [Callinectes sapidus] Length = 58 Frame 2 hits (HSPs): _______________________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | 58 0 20 40 __________________ Annotated Domains: Entrez Domain: BETA. 1..29 Entrez Domain: ALPHA. 30..58 Entrez metal-binding site: CLUSTER B. 5 Entrez metal-binding site: CLUSTER B. 6 Entrez metal-binding site: CLUSTER B. 10 Entrez metal-binding site: CLUSTER B. 12 Entrez metal-binding site: CLUSTER B. 17 Entrez metal-binding site: CLUSTER B. 21 Entrez metal-binding site: CLUSTER B. 23 Entrez metal-binding site: CLUSTER B. 26 Entrez metal-binding site: CLUSTER B. 28 Entrez metal-binding site: CLUSTER A. 31 Entrez metal-binding site: CLUSTER A. 34 Entrez metal-binding site: CLUSTER A. 38 Entrez metal-binding site: CLUSTER A. 40 Entrez metal-binding site: CLUSTER A. 46 Entrez metal-binding site: CLUSTER A. 50 Entrez metal-binding site: CLUSTER A. 54 Entrez metal-binding site: CLUSTER A. 56 Entrez metal-binding site: CLUSTER A. 57 PFAM metalthio: Metallothionein 2..58 PRINTS MTCRUSTACEAN1: Crustacean metallothionei 2..18 PRINTS MTCRUSTACEAN2: Crustacean metallothionei 20..38 PRINTS MTCRUSTACEAN3: Crustacean metallothionei 43..54 PRODOM PD000782: MT(23) MT1(12) MT2(11) 3..57 __________________ Plus Strand HSPs: Score = 56 (19.7 bits), Expect = 9.9, P = 1.0 Identities = 17/41 (41%), Positives = 20/41 (48%), Frame = +2 Query: 110 CQEGNCRGGW*CCC-SCRRSQKE*PCAEKIGEAPERSKA*CS 232 C+EG C+ G C C SCR PC + E SK CS Sbjct: 12 CKEGECKTG--CKCKSCRCP----PCDKCSSECKCTSKEECS 47 Parameters: filter=none matrix=BLOSUM62 V=50 B=50 E=10 gi H=1 sort_by_pvalue echofilter ctxfactor=5.98 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.318 0.135 0.401 +3 0 BLOSUM62 0.318 0.135 0.401 0.318 0.133 0.387 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.318 0.135 0.401 0.354 0.152 0.698 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.135 0.401 0.340 0.148 0.449 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.135 0.401 0.331 0.141 0.432 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.135 0.401 0.358 0.153 0.577 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.141 0.494 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 124 124 10. 71 3 12 22 0.10 33 29 0.11 35 +2 0 124 123 10. 71 3 12 22 0.10 33 29 0.11 35 +1 0 124 123 10. 71 3 12 22 0.10 33 29 0.11 35 -1 0 124 124 10. 71 3 12 22 0.10 33 29 0.11 35 -2 0 124 124 10. 71 3 12 22 0.10 33 29 0.11 35 -3 0 124 123 10. 71 3 12 22 0.10 33 29 0.11 35 Statistics: Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr Title: nr Release date: unknown Posted date: 8:50 PM CDT May 27, 2000 Format: BLAST # of letters in database: 158,518,215 # of sequences in database: 505,245 # of database sequences satisfying E: 30 No. of states in DFA: 594 (59 KB) Total size of DFA: 177 KB (192 KB) Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00 No. of threads or processors used: 4 Search cpu time: 184.30u 0.98s 185.28t Elapsed: 00:00:58 Total cpu time: 184.37u 1.02s 185.39t Elapsed: 00:00:58 Start: Wed Feb 14 20:51:22 2001 End: Wed Feb 14 20:52:20 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000