R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|461753|sp|P35100|CLPA_PEA ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT
CLPA HOMOLOG PRECURSOR >gi|419773|pir||S31164 endopeptidase Clp
ATP-binding chain precursor, chloroplast - garden pea
>gi|169128|gb|AAA33680.1| (L09547) nuclear encoded precursor to
chloroplast protein [Pisum sativum]
Length = 922
Frame 3 hits (HSPs): _________
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 922
0 150 300 450 600 750 900
__________________
Annotated Domains:
Entrez Domain: I. 255..502
Entrez Domain: II. 569..760
Entrez np-binding site: ATP (POTENTIAL). 300..307
Entrez np-binding site: ATP (POTENTIAL). 643..650
PFAM clpA_B: Chaperonin clpA/B 568..895
PRINTS CLPPROTEASEA1: CLPA protease motif I - 2 639..657
PRINTS CLPPROTEASEA2: CLPA protease motif II - 684..702
PRINTS CLPPROTEASEA3: CLPA protease motif III - 713..731
PRINTS CLPPROTEASEA4: CLPA protease motif IV - 746..760
PRODOM PD023617: 1..85
PRODOM PD150830: 89..112
PRODOM PD002024: CLPC(3) CLPB(2) 114..234
PRODOM PD186957: 236..272
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 274..409
PRODOM PD001382: CLPB(9) CLPA(3) CLPC(3) 411..445
PRODOM PD186056: CLPB(9) CLPA(3) CLPC(3) 447..480
PRODOM PD005402: CLPB(5) CLPC(3) UVRB(3) 482..545
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 568..894
PRODOM PD192573: CLPA_PEA 896..921
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 300..307
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 643..650
PROSITE CLPAB_1: Chaperonins clpA/B signature 1. 387..399
PROSITE CLPAB_2: Chaperonins clpA/B signature 2. 669..687
__________________
Plus Strand HSPs:
Score = 321 (113.0 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 65/90 (72%), Positives = 76/90 (84%), Frame = +1
Query: 7 MARVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMMSALRTNGLRMSGFSGLRTFNPLDT 186
MARVLAQS++VPGLVA H+ Q KGSGK KRS K M ALRT+GLRMSGFSGLRTFN L+T
Sbjct: 1 MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNT 60
Query: 187 MLRPGIDFHSKVSIATSSRQARATRCVAQS 276
M+RPG+DFHSKVS A SSR+ARA R + ++
Sbjct: 61 MMRPGLDFHSKVSKAVSSRRARAKRFIPRA 90
Score = 179 (63.0 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 39/69 (56%), Positives = 49/69 (71%), Frame = +2
Query: 266 LPKAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHL 445
+P+AMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K GI+L
Sbjct: 87 IPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINL 146
Query: 446 QXAXLELKK 472
+ A +E++K
Sbjct: 147 KDARVEVEK 155
Score = 121 (42.6 bits), Expect = 0.00031, P = 0.00031
Identities = 43/106 (40%), Positives = 51/106 (48%), Frame = +3
Query: 225 HCNVFAASKSYQMRC----PKPCLSVSLRKQSKLIMLAQXEARLLVTILLAQNKFYWVLS 392
H V A S + R P+ K K+IMLAQ EAR L + + L
Sbjct: 69 HSKVSKAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLI 128
Query: 393 AKGTGIAAKVLKSMGFTSXMXXWN*-KNNWKGYGFVAVEIHY-PRA 524
+GTGIAAKVLKSMG K +G GFVAVEI + PRA
Sbjct: 129 GEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRA 174
Score = 81 (28.5 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 170 FTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLRE 205
Score = 59 (20.8 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 14/46 (30%), Positives = 26/46 (56%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMG 437
+ +++ L+Q EAR L + L +G G+AA+VL+++G
Sbjct: 173 RAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG 218
>gi|399213|sp|P31542|CLAB_LYCES ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT
CLPA HOMOLOG CD4B PRECURSOR >gi|100190|pir||B35905 endopeptidase
Clp ATP-binding chain B precursor, chloroplast - tomato
>gi|170435|gb|AAA34161.1| (M32604) ATP-dependent protease (CD4B)
[Lycopersicon esculentum]
Length = 923
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 923
0 150 300 450 600 750 900
__________________
Annotated Domains:
BLOCKS BL00870A: Chaperonins clpA/B proteins. 269..315
BLOCKS BL00870B: Chaperonins clpA/B proteins. 321..365
BLOCKS BL00870C: Chaperonins clpA/B proteins. 378..426
BLOCKS BL00870D: Chaperonins clpA/B proteins. 454..496
BLOCKS BL00870E: Chaperonins clpA/B proteins. 595..649
BLOCKS BL00870F: Chaperonins clpA/B proteins. 667..715
BLOCKS BL00870G: Chaperonins clpA/B proteins. 727..760
BLOCKS BL00870H: Chaperonins clpA/B proteins. 798..812
BLOCKS BL00870I: Chaperonins clpA/B proteins. 856..868
Entrez Domain: I. 255..502
Entrez Domain: II. 569..760
Entrez np-binding site: ATP (POTENTIAL). 300..307
Entrez np-binding site: ATP (POTENTIAL). 643..650
PFAM clpA_B: Chaperonin clpA/B 568..895
PRINTS CLPPROTEASEA1: CLPA protease motif I - 2 639..657
PRINTS CLPPROTEASEA2: CLPA protease motif II - 684..702
PRINTS CLPPROTEASEA3: CLPA protease motif III - 713..731
PRINTS CLPPROTEASEA4: CLPA protease motif IV - 746..760
PRODOM PD023617: 1..86
PRODOM PD150830: 89..112
PRODOM PD002024: CLPC(3) CLPB(2) 114..234
PRODOM PD186957: 236..272
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 274..409
PRODOM PD001382: CLPB(9) CLPA(3) CLPC(3) 411..445
PRODOM PD186056: CLPB(9) CLPA(3) CLPC(3) 447..480
PRODOM PD005402: CLPB(5) CLPC(3) UVRB(3) 482..545
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 568..894
PRODOM PD077549: CLAA(1) CLAB(1) 896..922
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 300..307
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 643..650
PROSITE CLPAB_1: Chaperonins clpA/B signature 1. 387..399
PROSITE CLPAB_2: Chaperonins clpA/B signature 2. 669..687
__________________
Plus Strand HSPs:
Score = 181 (63.7 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 40/69 (57%), Positives = 49/69 (71%), Frame = +2
Query: 266 LPKAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHL 445
+PKAMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K GI+L
Sbjct: 87 VPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINL 146
Query: 446 QXAXLELKK 472
+ A +E++K
Sbjct: 147 KDARVEVEK 155
Score = 160 (56.3 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 36/90 (40%), Positives = 53/90 (58%), Frame = +1
Query: 7 MARVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMMSALRTNGLRMSGFSGLRTFNPLDT 186
MAR L QS ++P VA R + GSGK KR+ M+ +++ L + F+GLR N +DT
Sbjct: 1 MARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDT 60
Query: 187 MLRPGIDFHSKVSIATSSRQARATRCVAQS 276
++R G SKV+ AT R+ R R V ++
Sbjct: 61 LVRSGETLQSKVAAATYVRRPRGCRFVPKA 90
Score = 122 (42.9 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 39/87 (44%), Positives = 45/87 (51%), Frame = +3
Query: 270 PKPCLSVSLRKQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSX 449
PK K K+IMLAQ EAR L + + L +GTGIAAKVLKSMG
Sbjct: 88 PKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 147
Query: 450 MXXWN*-KNNWKGYGFVAVEIHY-PRA 524
K +G GFVAVEI + PRA
Sbjct: 148 DARVEVEKIIGRGSGFVAVEIPFTPRA 174
Score = 79 (27.8 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 170 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLRE 205
Score = 52 (18.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMG 437
+ +++ L+ EAR L + L +G G+AA+VL+++G
Sbjct: 173 RAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG 218
>gi|9758239|dbj|BAB08738.1| (AB017063) ATP-dependent Clp protease, ATP-binding
subunit [Arabidopsis thaliana]
Length = 929
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 929
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 173 (60.9 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 39/67 (58%), Positives = 47/67 (70%), Frame = +2
Query: 272 KAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQX 451
KAMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K GI+L+
Sbjct: 92 KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKD 151
Query: 452 AXLELKK 472
A +E++K
Sbjct: 152 ARVEVEK 158
Score = 167 (58.8 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 41/83 (49%), Positives = 53/83 (63%), Frame = +1
Query: 13 RVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMM-SALRTNGLRMSGFSGLRTFNPLDTM 189
RVLAQS P L R+ +GSG+ +RS KMM S L+ +GLRM GF GLR N LDT+
Sbjct: 6 RVLAQSTP-PSLACYQRNVPSRGSGRSRRSVKMMCSQLQVSGLRMQGFMGLRGNNALDTL 64
Query: 190 LRPGIDFHSKVSIATSSRQARATR 261
+ DFHSKV A + + +A+R
Sbjct: 65 GKSRQDFHSKVRQAMNVPKGKASR 88
Score = 118 (41.5 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 37/77 (48%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTGIAAKVLKSMG K
Sbjct: 101 KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII 160
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 161 GRGSGFVAVEIPFTPRA 177
Score = 79 (27.8 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 173 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLRE 208
Score = 52 (18.3 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMG 437
+ +++ L+ EAR L + L +G G+AA+VL+++G
Sbjct: 176 RAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG 221
>gi|399212|sp|P31541|CLAA_LYCES ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT
CLPA HOMOLOG CD4A PRECURSOR >gi|100189|pir||A35905 endopeptidase
Clp ATP-binding chain A precursor, chloroplast - tomato
>gi|170433|gb|AAA34160.1| (M32603) ATP-dependent protease (CD4A)
[Lycopersicon esculentum]
Length = 926
Frame 3 hits (HSPs): _________
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 926
0 150 300 450 600 750 900
__________________
Annotated Domains:
BLOCKS BL00870A: Chaperonins clpA/B proteins. 271..317
BLOCKS BL00870B: Chaperonins clpA/B proteins. 323..367
BLOCKS BL00870C: Chaperonins clpA/B proteins. 380..428
BLOCKS BL00870D: Chaperonins clpA/B proteins. 456..498
BLOCKS BL00870E: Chaperonins clpA/B proteins. 598..652
BLOCKS BL00870F: Chaperonins clpA/B proteins. 670..718
BLOCKS BL00870G: Chaperonins clpA/B proteins. 730..763
BLOCKS BL00870H: Chaperonins clpA/B proteins. 801..815
BLOCKS BL00870I: Chaperonins clpA/B proteins. 859..871
DOMO DM01326: CHAPERONINSCLPA/B 93..180
DOMO DM01326: CHAPERONINSCLPA/B 182..266
DOMO DM00024: AAA-PROTEINFAMILY 268..419
DOMO DM00638: CHAPERONINSCLPA/B 421..508
DOMO DM00798: CHAPERONINSCLPA/B 510..601
DOMO DM00024: AAA-PROTEINFAMILY 603..769
DOMO DM00327: CHAPERONINSCLPA/B 771..909
Entrez Domain: 2 X 32 AA APPROXIMATE REPEATS. 110..216
Entrez Repetitive region: 1. 110..141
Entrez Repetitive region: 2. 185..216
Entrez Domain: I. 257..504
Entrez Domain: II. 572..763
Entrez np-binding site: ATP (POTENTIAL). 302..309
Entrez np-binding site: ATP (POTENTIAL). 646..653
PFAM clpA_B: Chaperonin clpA/B 571..898
PRINTS CLPPROTEASEA1: CLPA protease motif I - 2 642..660
PRINTS CLPPROTEASEA2: CLPA protease motif II - 687..705
PRINTS CLPPROTEASEA3: CLPA protease motif III - 716..734
PRINTS CLPPROTEASEA4: CLPA protease motif IV - 749..763
PRODOM PD023617: 2..88
PRODOM PD150830: 91..114
PRODOM PD002024: CLPC(3) CLPB(2) 116..236
PRODOM PD186957: 238..274
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 276..411
PRODOM PD001382: CLPB(9) CLPA(3) CLPC(3) 413..447
PRODOM PD186056: CLPB(9) CLPA(3) CLPC(3) 449..482
PRODOM PD005402: CLPB(5) CLPC(3) UVRB(3) 484..547
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 571..897
PRODOM PD077549: CLAA(1) CLAB(1) 899..925
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 302..309
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 646..653
PROSITE CLPAB_1: Chaperonins clpA/B signature 1. 389..401
PROSITE CLPAB_2: Chaperonins clpA/B signature 2. 672..690
__________________
Plus Strand HSPs:
Score = 181 (63.7 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 40/69 (57%), Positives = 49/69 (71%), Frame = +2
Query: 266 LPKAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHL 445
+PKAMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K GI+L
Sbjct: 89 VPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINL 148
Query: 446 QXAXLELKK 472
+ A +E++K
Sbjct: 149 KDARVEVEK 157
Score = 155 (54.6 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 38/92 (41%), Positives = 55/92 (59%), Frame = +1
Query: 4 IMARVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMMSALRTNGLRMSGFSGLRTFNPLD 183
+MAR L QS N+ VA R GQ GS K +R+ +M+ ++ R++ F+GLR N LD
Sbjct: 1 MMARALVQSTNILPSVAGERAGQFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNALD 60
Query: 184 TML-RPGIDFHSKVSIATSSRQARATRCVAQS 276
T+L + G HSKV+ AT R+ R R V ++
Sbjct: 61 TLLVKSGETLHSKVAAATFVRRPRGCRFVPKA 92
Score = 125 (44.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 44/107 (41%), Positives = 54/107 (50%), Frame = +3
Query: 222 IHCNVFAASKSYQMR-C---PKPCLSVSLRKQSKLIMLAQXEARLLVTILLAQNKFYWVL 389
+H V AA+ + R C PK K K+IMLAQ EAR L + + L
Sbjct: 70 LHSKVAAATFVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGL 129
Query: 390 SAKGTGIAAKVLKSMGFTSXMXXWN*-KNNWKGYGFVAVEIHY-PRA 524
+GTGIAAKVLKSMG K +G GF+AVEI + PRA
Sbjct: 130 IGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFIAVEIPFTPRA 176
Score = 79 (27.8 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 172 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLRE 207
Score = 52 (18.3 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMG 437
+ +++ L+ EAR L + L +G G+AA+VL+++G
Sbjct: 175 RAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG 220
>gi|2921158|gb|AAC04687.1| (AF022909) ClpC [Arabidopsis thaliana]
Length = 928
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 928
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 173 (60.9 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 39/67 (58%), Positives = 47/67 (70%), Frame = +2
Query: 272 KAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQX 451
KAMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K GI+L+
Sbjct: 91 KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKD 150
Query: 452 AXLELKK 472
A +E++K
Sbjct: 151 ARVEVEK 157
Score = 146 (51.4 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 37/83 (44%), Positives = 48/83 (57%), Frame = +1
Query: 13 RVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMMSALRTNGLRMSGFSGLRTFNPLDTML 192
RVLAQS P L R+ +GSG+ +RS KMM + L M GF GLR N LDT+
Sbjct: 6 RVLAQSTP-PSLACYQRNVPSRGSGRSRRSVKMMCIIFNVWLPMQGFMGLRGNNALDTLG 64
Query: 193 RPGIDFHSKVSIATSSRQARATR 261
+ DFHSKV A + + +A+R
Sbjct: 65 KSRQDFHSKVRQAMNVPKGKASR 87
Score = 118 (41.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 37/77 (48%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTGIAAKVLKSMG K
Sbjct: 100 KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII 159
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 160 GRGSGFVAVEIPFTPRA 176
Score = 80 (28.2 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 172 FTPRAKRVLELSLEATRQLGHNYIGSEHLLLGLLRE 207
Score = 44 (15.5 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 8/17 (47%), Positives = 14/17 (82%), Frame = +3
Query: 387 LSAKGTGIAAKVLKSMG 437
L +G G+AA+VL+++G
Sbjct: 204 LLREGEGVAARVLENLG 220
>gi|4105131|gb|AAD02267.1| (AF043539) ClpC protease [Spinacia oleracea]
Length = 891
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 891
0 150 300 450 600 750
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 38/67 (56%), Positives = 47/67 (70%), Frame = +2
Query: 272 KAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQX 451
+AMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K GI+L+
Sbjct: 88 RAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKD 147
Query: 452 AXLELKK 472
A +E++K
Sbjct: 148 ARVEVEK 154
Score = 136 (47.9 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 36/90 (40%), Positives = 52/90 (57%), Frame = +1
Query: 7 MARVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMMSALRTNGLRMSGFSGLRTFNPLDT 186
MA L QS N+P L A +GQ + S K ++ KMM++L+ G RM FSG+R N LDT
Sbjct: 1 MAGALIQSTNIPSL-AYKVNGQFQRSDKGNKAVKMMASLQDPGYRMRTFSGVRGGNALDT 59
Query: 187 MLRPGIDFHSKVSIATSSRQARATRCVAQS 276
+ F+SK+ S R+ A+R V ++
Sbjct: 60 LGTTSECFYSKMRAVLSVRKGTASRGVVRA 89
Score = 118 (41.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 37/77 (48%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTGIAAKVLKSMG K
Sbjct: 97 KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII 156
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 157 GRGSGFVAVEIPFTPRA 173
Score = 79 (27.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 169 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLRE 204
Score = 52 (18.3 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMG 437
+ +++ L+ EAR L + L +G G+AA+VL+++G
Sbjct: 172 RAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG 217
>gi|5360574|dbj|BAA82062.1| (AB022324) AtClpC [Arabidopsis thaliana]
Length = 952
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 952
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 207 (72.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 44/88 (50%), Positives = 60/88 (68%), Frame = +2
Query: 209 FILRYPLQRLRGKQELPDALPKAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGL 388
F+++Y L + G+++ +PKAMFERFTEKAIKV S ++ LGHNFVGTEQILLGL
Sbjct: 91 FLVKYKLAKSSGREKASRCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGL 150
Query: 389 IGERNWYCC*GAKVHGIHLQXAXLELKK 472
IGE K GI+L+ + +E++K
Sbjct: 151 IGEGTGIAAKVLKSMGINLKDSRVEVEK 178
Score = 124 (43.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 40/90 (44%), Positives = 47/90 (52%), Frame = +3
Query: 264 RC-PKPCLSVSLRKQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGF 440
RC PK K K+IML+Q EAR L + + L +GTGIAAKVLKSMG
Sbjct: 108 RCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGI 167
Query: 441 TSXMXXWN*-KNNWKGYGFVAVEIHY-PRA 524
K +G GFVAVEI + PRA
Sbjct: 168 NLKDSRVEVEKIIGRGSGFVAVEIPFTPRA 197
Score = 100 (35.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/57 (42%), Positives = 35/57 (61%), Frame = +1
Query: 106 KMMSALRTNGLRMSGFSGLRTFNPLDTMLRPGIDFHSKVSIATSSRQARATRCVAQS 276
KMMS+L+ L + FSGLR + LD + RP F K +A SS + +A+RCV ++
Sbjct: 57 KMMSSLQAPLLTIQSFSGLRAPSALDYLGRPSPGFLVKYKLAKSSGREKASRCVPKA 113
Score = 79 (27.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 193 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLRE 228
Score = 52 (18.3 bits), Expect = 0.0074, Sum P(2) = 0.0073
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMG 437
+ +++ L+ EAR L + L +G G+AA+VL+++G
Sbjct: 196 RAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG 241
>gi|11265212|pir||T49283 AtClpC - Arabidopsis thaliana
>gi|7576225|emb|CAB87915.1| (AL132963) AtClpC [Arabidopsis
thaliana]
Length = 952
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 952
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 207 (72.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 44/88 (50%), Positives = 60/88 (68%), Frame = +2
Query: 209 FILRYPLQRLRGKQELPDALPKAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGL 388
F+++Y L + G+++ +PKAMFERFTEKAIKV S ++ LGHNFVGTEQILLGL
Sbjct: 91 FLVKYKLAKSSGREKASRCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGL 150
Query: 389 IGERNWYCC*GAKVHGIHLQXAXLELKK 472
IGE K GI+L+ + +E++K
Sbjct: 151 IGEGTGIAAKVLKSMGINLKDSRVEVEK 178
Score = 124 (43.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 40/90 (44%), Positives = 47/90 (52%), Frame = +3
Query: 264 RC-PKPCLSVSLRKQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGF 440
RC PK K K+IML+Q EAR L + + L +GTGIAAKVLKSMG
Sbjct: 108 RCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGI 167
Query: 441 TSXMXXWN*-KNNWKGYGFVAVEIHY-PRA 524
K +G GFVAVEI + PRA
Sbjct: 168 NLKDSRVEVEKIIGRGSGFVAVEIPFTPRA 197
Score = 100 (35.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/57 (42%), Positives = 35/57 (61%), Frame = +1
Query: 106 KMMSALRTNGLRMSGFSGLRTFNPLDTMLRPGIDFHSKVSIATSSRQARATRCVAQS 276
KMMS+L+ L + FSGLR + LD + RP F K +A SS + +A+RCV ++
Sbjct: 57 KMMSSLQAPLLTIQSFSGLRAPSALDYLGRPSPGFLVKYKLAKSSGREKASRCVPKA 113
Score = 79 (27.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 16/36 (44%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++G+E +LLGL+ E
Sbjct: 193 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLRE 228
Score = 52 (18.3 bits), Expect = 0.0074, Sum P(2) = 0.0073
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMG 437
+ +++ L+ EAR L + L +G G+AA+VL+++G
Sbjct: 196 RAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG 241
>gi|1168972|sp|P46523|CLPA_BRANA ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT
CLPA PRECURSOR >gi|480969|pir||S37557 endopeptidase Clp ATP-binding
chain A, chloroplast - rape (fragment) >gi|406311|emb|CAA53077.1|
(X75328) clpA [Brassica napus]
Length = 874
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): ___
Annotated Domains: _______________ ____________________
__________________________________________________
Database sequence: | | | | | | | 874
0 150 300 450 600 750
__________________
Annotated Domains:
Entrez Domain: I. 204..451
Entrez Domain: II. 517..708
Entrez np-binding site: ATP (POTENTIAL). 249..256
Entrez np-binding site: ATP (POTENTIAL). 591..598
PFAM clpA_B: Chaperonin clpA/B 516..842
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 249..256
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 591..598
PROSITE CLPAB_1: Chaperonins clpA/B signature 1. 336..348
PROSITE CLPAB_2: Chaperonins clpA/B signature 2. 617..635
__________________
Plus Strand HSPs:
Score = 173 (60.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 39/67 (58%), Positives = 47/67 (70%), Frame = +2
Query: 272 KAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQX 451
KAMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K GI+L+
Sbjct: 39 KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKD 98
Query: 452 AXLELKK 472
A +E++K
Sbjct: 99 ARVEVEK 105
Score = 118 (41.5 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 37/77 (48%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTGIAAKVLKSMG K
Sbjct: 48 KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII 107
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 108 GRGSGFVAVEIPFTPRA 124
Score = 37 (13.0 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 11/35 (31%), Positives = 18/35 (51%), Frame = +1
Query: 172 NPLDTMLRPGIDFHSKVSIATSSRQARATRCVAQS 276
N LDT+ R F KV A + + + +R V ++
Sbjct: 6 NVLDTLGRSRQSFGGKVRQAMNVPKGKGSRGVVKA 40
>gi|7428213|pir||S71553 endopeptidase Clp ATP-binding chain C - Synechococcus
sp. (strain PCC 7942) >gi|755163|gb|AAB67745.1| (U16134) ClpC
[Synechococcus sp.]
Length = 839
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 839
0 150 300 450 600 750
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 37/67 (55%), Positives = 47/67 (70%), Frame = +2
Query: 272 KAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQX 451
+AMFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K G++L+
Sbjct: 14 EAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKD 73
Query: 452 AXLELKK 472
A +E++K
Sbjct: 74 ARIEVEK 80
Score = 116 (40.8 bits), Expect = 0.0015, P = 0.0015
Identities = 36/77 (46%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTG+AAKVLKSMG K
Sbjct: 23 KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKII 82
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 83 GRGSGFVAVEIPFTPRA 99
Score = 85 (29.9 bits), Expect = 9.9, P = 1.0
Identities = 18/36 (50%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++GTE +LLGLI E
Sbjct: 95 FTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIRE 130
>gi|7428212|pir||S76330 probable endopeptidase Clp ATP-binding chain -
Synechocystis sp. (strain PCC 6803) >gi|1001555|dbj|BAA10182.1|
(D64000) ATP-dependent Clp protease regulatory subunit
[Synechocystis sp.]
Length = 821
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 821
0 150 300 450 600 750
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 36/65 (55%), Positives = 45/65 (69%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQXAX 457
MFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K G++L+ A
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 458 LELKK 472
+E++K
Sbjct: 61 IEVEK 65
Score = 116 (40.8 bits), Expect = 0.0014, P = 0.0014
Identities = 36/77 (46%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTG+AAKVLKSMG K
Sbjct: 8 KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKII 67
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 68 GRGSGFVAVEIPFTPRA 84
Score = 85 (29.9 bits), Expect = 9.6, P = 1.0
Identities = 18/36 (50%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++GTE +LLGLI E
Sbjct: 80 FTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIRE 115
>gi|11467609 ref|NP_050661.1| Clp protease ATP binding subunit [Guillardia
theta] >gi|5921798|sp|O78410|CLPC_GUITH ATP-DEPENDENT CLP PROTEASE
ATP-BINDING SUBUNIT CLPA HOMOLOG >gi|3602934|gb|AAC35595.1|
(AF041468) Clp protease ATP binding subunit [Guillardia theta]
Length = 819
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 819
0 150 300 450 600 750
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 36/65 (55%), Positives = 45/65 (69%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQXAX 457
MFERFTEKAIKV + ++ LGHNFVGTEQILLGLIGE K G++L+ A
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDAR 60
Query: 458 LELKK 472
+E++K
Sbjct: 61 VEVEK 65
Score = 117 (41.2 bits), Expect = 0.0011, P = 0.0011
Identities = 37/77 (48%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTGIAAKVLKSMG K
Sbjct: 8 KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKII 67
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 68 GRGSGFVAVEIPFTPRA 84
Score = 85 (29.9 bits), Expect = 9.6, P = 1.0
Identities = 18/36 (50%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A +V S ++ LGHN++GTE +LLGLI E
Sbjct: 80 FTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIRE 115
>gi|11465497 ref|NP_045112.1| unknown; Clp protease ATP binding subunit
[Cyanidium caldarium] >gi|6466400|gb|AAF12982.1|AF022186_105
(AF022186) unknown; Clp protease ATP binding subunit [Cyanidium
caldarium]
Length = 854
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 854
0 150 300 450 600 750
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 35/67 (52%), Positives = 45/67 (67%), Frame = +2
Query: 272 KAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQX 451
K MFERFTEKA+KV + ++ LGHNFVGTEQILLG++GE K GI L+
Sbjct: 30 KNMFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKD 89
Query: 452 AXLELKK 472
A +E++K
Sbjct: 90 ARIEVEK 96
Score = 114 (40.1 bits), Expect = 0.0029, P = 0.0029
Identities = 34/77 (44%), Positives = 43/77 (55%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + + +GTG+AAK LKSMG T K
Sbjct: 39 KAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKII 98
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVA+EI + PRA
Sbjct: 99 GRGSGFVAIEIPFTPRA 115
>gi|11465798 ref|NP_053942.1| Clp protease ATP binding subunit [Porphyra
purpurea] >gi|1705925|sp|P51332|CLPC_PORPU ATP-DEPENDENT CLP
PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG >gi|2147187|pir||S73253
endopeptidase Clp ATP-binding chain B - red alga (Porphyra
purpurea) chloroplast >gi|1276798|gb|AAC08218.1| (U38804) Clp
protease ATP binding subunit [Porphyra purpurea]
Length = 821
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 821
0 150 300 450 600 750
Plus Strand HSPs:
Score = 156 (54.9 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 34/65 (52%), Positives = 44/65 (67%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQXAX 457
MFERFTEKAIKV + ++ LGHNFVGTEQILLGL+GE K ++L+ A
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDAR 60
Query: 458 LELKK 472
+E++K
Sbjct: 61 VEVEK 65
Score = 107 (37.7 bits), Expect = 0.021, P = 0.021
Identities = 35/77 (45%), Positives = 42/77 (54%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+IMLAQ EAR L + + L +GTGIAA+VLKSM K
Sbjct: 8 KAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKII 67
Query: 477 WKGYGFVAVEIHY-PRA 524
+G GFVAVEI + PRA
Sbjct: 68 GRGSGFVAVEIPFTPRA 84
>gi|11357229|pir||T47485 clpC-like protein - Arabidopsis thaliana
>gi|6996248|emb|CAB75474.1| (AL138657) clpC-like protein
[Arabidopsis thaliana]
Length = 341
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 341
0 150 300
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/65 (50%), Positives = 42/65 (64%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQXAX 457
MFERFTEKAIKV + ++ LG+NF GTE ILL LIGE K GI+L+ A
Sbjct: 1 MFERFTEKAIKVITLAQEEARRLGYNFFGTEHILLSLIGEGTGIAAKVLKSMGINLKDAR 60
Query: 458 LELKK 472
+E++K
Sbjct: 61 VEVEK 65
Score = 102 (35.9 bits), Expect = 0.027, P = 0.026
Identities = 34/76 (44%), Positives = 38/76 (50%), Frame = +3
Query: 300 KQSKLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFTSXMXXWN*-KNN 476
K K+I LAQ EAR L L +GTGIAAKVLKSMG K
Sbjct: 8 KAIKVITLAQEEARRLGYNFFGTEHILLSLIGEGTGIAAKVLKSMGINLKDARVEVEKII 67
Query: 477 WKGYGFVAVEIHY-PR 521
+G GFV VEI + PR
Sbjct: 68 GRGSGFVVVEIPFTPR 83
>gi|11467441 ref|NP_043587.1| caseinolytic-like Clp protease [Odontella
sinensis] >gi|1352089|sp|P49574|CLPC_ODOSI ATP-DEPENDENT CLP
PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG >gi|7428214|pir||S78246
endopeptidase Clp ATP-binding chain C - Odontella sinensis
chloroplast >gi|1185136|emb|CAA91619.1| (Z67753) caseinolytic-like
Clp protease [Odontella sinensis]
Length = 885
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 885
0 150 300 450 600 750
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/64 (46%), Positives = 42/64 (65%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQXAX 457
MFE+FTE AIKV S ++ +GHNFVGTEQ+LLG+IG+R+ K + L+ A
Sbjct: 1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGIGARALKKQKVTLKKAR 60
Query: 458 LELK 469
E++
Sbjct: 61 REIE 64
>gi|149918|gb|AAA25352.1| (M67510) ORFIII [Mycobacterium leprae]
Length = 97
Frame 3 hits (HSPs): _______________________
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | 97
0 20 40 60 80
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 21/40 (52%), Positives = 29/40 (72%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
MFERFT++A +V + ++ L HN++GTE ILLGLI E
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIPE 40
Score = 67 (23.6 bits), Expect = 9.2, P = 1.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Frame = +3
Query: 309 KLIMLAQXEARLLVTILLAQNKFYWVLSAKGTGIAAKVLKSMGFT 443
++++LAQ EAR+L + L +G G+AAK L S+G +
Sbjct: 11 RVVVLAQEEARMLNHNYIGTEHILLGLIPEGEGVAAKSLDSLGIS 55
>gi|7480488|pir||T36384 probable ATP-binding proteinase - Streptomyces
coelicolor >gi|4585605|emb|CAB40873.1| (AL049628) putative
Clp-family ATP-binding protease [Streptomyces coelicolor A3(2)]
Length = 841
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 841
0 150 300 450 600 750
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.013, P = 0.013
Identities = 24/65 (36%), Positives = 38/65 (58%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQXAX 457
MFERFT++A +V + ++ L HN++GTE ILLGLI E + GI L+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 458 LELKK 472
++++
Sbjct: 61 QQVEE 65
Score = 86 (30.3 bits), Expect = 7.6, P = 1.0
Identities = 20/36 (55%), Positives = 24/36 (66%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A KV S + LGHN++GTE ILLGLI E
Sbjct: 80 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIRE 115
>gi|6647441|sp|O06286|CLPC_MYCTU PROBABLE ATP-DEPENDENT CLP PROTEASE
ATP-BINDING SUBUNIT >gi|7428215|pir||E70954 probable endopeptidase
Clp ATP-binding chain C - Mycobacterium tuberculosis (strain H37RV)
>gi|2113980|emb|CAB08932.1| (Z95557) clpC [Mycobacterium
tuberculosis]
Length = 848
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 848
0 150 300 450 600 750
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.017, P = 0.017
Identities = 24/65 (36%), Positives = 38/65 (58%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERNWYCC*GAKVHGIHLQXAX 457
MFERFT++A +V + ++ L HN++GTE ILLGLI E + GI L+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 458 LELKK 472
++++
Sbjct: 61 SQVEE 65
Score = 86 (30.3 bits), Expect = 7.7, P = 1.0
Identities = 20/36 (55%), Positives = 24/36 (66%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A KV S + LGHN++GTE ILLGLI E
Sbjct: 80 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIRE 115
>gi|140227|sp|P24428|CLPC_MYCLE PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING
SUBUNIT >gi|44417|emb|CAA37573.1| (X53488) protein product
N-terminal fragment (AA 1-649) [Mycobacterium leprae]
Length = 649
Frame 2 hits (HSPs): ____ ___
Annotated Domains: _________ ____________________ ______________
__________________________________________________
Database sequence: | | | | | | 649
0 150 300 450 600
__________________
Annotated Domains:
Entrez Domain: 2 X 32 AA APPROXIMATE REPEATS. 18..124
Entrez Repetitive region: 1. 18..49
Entrez Repetitive region: 2. 93..124
Entrez Domain: I. 171..418
Entrez Domain: II. 479..649
Entrez np-binding site: ATP (POTENTIAL). 216..223
Entrez np-binding site: ATP (POTENTIAL). 553..560
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 216..223
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 553..560
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.022, P = 0.022
Identities = 21/40 (52%), Positives = 29/40 (72%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
MFERFT++A +V + ++ L HN++GTE ILLGLI E
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHE 40
Score = 86 (30.3 bits), Expect = 5.6, P = 1.0
Identities = 20/36 (55%), Positives = 24/36 (66%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A KV S + LGHN++GTE ILLGLI E
Sbjct: 80 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIRE 115
>gi|98790|pir||S11163 endopeptidase Clp ATP-binding chain C - Mycobacterium
leprae (fragment)
Length = 649
Frame 2 hits (HSPs): ____ ___
Annotated Domains: __ __
__________________________________________________
Database sequence: | | | | | | 649
0 150 300 450 600
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 216..223
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 553..560
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.022, P = 0.022
Identities = 21/40 (52%), Positives = 29/40 (72%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
MFERFT++A +V + ++ L HN++GTE ILLGLI E
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHE 40
Score = 86 (30.3 bits), Expect = 5.6, P = 1.0
Identities = 20/36 (55%), Positives = 24/36 (66%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
FT +A KV S + LGHN++GTE ILLGLI E
Sbjct: 80 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIRE 115
>gi|1169544|sp|P42762|ERD1_ARATH ERD1 PROTEIN PRECURSOR >gi|541859|pir||JN0901
endopeptidase Clp ATP-binding chain C - Arabidopsis thaliana
>gi|497629|dbj|BAA04506.1| (D17582) ERD1 protein [Arabidopsis
thaliana] >gi|10177198|dbj|BAB10330.1| (AB023044) Erd1 protein
precursor [Arabidopsis thaliana]
Length = 945
Frame 2 hits (HSPs): ____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 945
0 150 300 450 600 750 900
__________________
Annotated Domains:
BLOCKS BL00870A: Chaperonins clpA/B proteins. 285..331
BLOCKS BL00870B: Chaperonins clpA/B proteins. 337..381
BLOCKS BL00870C: Chaperonins clpA/B proteins. 399..447
BLOCKS BL00870D: Chaperonins clpA/B proteins. 475..517
BLOCKS BL00870E: Chaperonins clpA/B proteins. 616..670
BLOCKS BL00870F: Chaperonins clpA/B proteins. 688..736
BLOCKS BL00870G: Chaperonins clpA/B proteins. 748..781
BLOCKS BL00870H: Chaperonins clpA/B proteins. 820..834
BLOCKS BL00870I: Chaperonins clpA/B proteins. 878..890
DOMO DM01326: CHAPERONINSCLPA/B 79..161
DOMO DM01326: CHAPERONINSCLPA/B 163..246
DOMO DM00024: AAA-PROTEINFAMILY 283..438
DOMO DM00638: CHAPERONINSCLPA/B 440..528
DOMO DM00024: AAA-PROTEINFAMILY 621..787
DOMO DM00327: CHAPERONINSCLPA/B 789..929
Entrez Domain: I. 271..523
Entrez Domain: II. 590..781
Entrez np-binding site: ATP (POTENTIAL). 316..323
Entrez np-binding site: ATP (POTENTIAL). 664..671
PFAM clpA_B: Chaperonin clpA/B 589..917
PRINTS CLPPROTEASEA1: CLPA protease motif I - 2 660..678
PRINTS CLPPROTEASEA2: CLPA protease motif II - 705..723
PRINTS CLPPROTEASEA3: CLPA protease motif III - 734..752
PRINTS CLPPROTEASEA4: CLPA protease motif IV - 767..781
PRODOM PD117843: ERD1_ARATH 27..100
PRODOM PD002024: CLPC(3) CLPB(2) 102..232
PRODOM PD120020: ERD1_ARATH 234..288
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 290..391
PRODOM PD193899: ERD1_ARATH 393..422
PRODOM PD001382: CLPB(9) CLPA(3) CLPC(3) 424..466
PRODOM PD186056: CLPB(9) CLPA(3) CLPC(3) 468..501
PRODOM PD120032: ERD1_ARATH 503..587
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 589..916
PRODOM PD077552: ERD1_ARATH 918..944
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 316..323
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 664..671
PROSITE CLPAB_1: Chaperonins clpA/B signature 1. 408..420
PROSITE CLPAB_2: Chaperonins clpA/B signature 2. 690..708
__________________
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.15, P = 0.14
Identities = 28/60 (46%), Positives = 39/60 (65%), Frame = +2
Query: 218 RYPLQRLRGKQELPDALPKAMFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
R+P QR R K+ P + A+FERFTE+AI+ S +K+LG + V T+ +LLGLI E
Sbjct: 64 RFP-QRKR-KKFTPIS---AVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAE 118
>gi|586900|sp|P37571|CLPC_BACSU NEGATIVE REGULATOR OF GENETIC COMPETENCE
CLPC/MECB >gi|2118112|pir||I40508 endopeptidase Clp ATP-binding
chain C - Bacillus subtilis >gi|442360|gb|AAA19233.1| (U02604) ClpC
adenosine triphosphatase [Bacillus subtilis]
>gi|467474|dbj|BAA05320.1| (D26185) clpA/clpB family [Bacillus
subtilis] >gi|2632353|emb|CAB11862.1| (Z99104) class III stress
response-related ATPase [Bacillus subtilis]
Length = 810
Frame 2 hits (HSPs): ___ ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 810
0 150 300 450 600 750
__________________
Annotated Domains:
BLOCKS BL00870A: Chaperonins clpA/B proteins. 177..223
BLOCKS BL00870B: Chaperonins clpA/B proteins. 229..273
BLOCKS BL00870C: Chaperonins clpA/B proteins. 286..334
BLOCKS BL00870D: Chaperonins clpA/B proteins. 362..404
BLOCKS BL00870E: Chaperonins clpA/B proteins. 497..551
BLOCKS BL00870F: Chaperonins clpA/B proteins. 569..617
BLOCKS BL00870G: Chaperonins clpA/B proteins. 629..662
BLOCKS BL00870H: Chaperonins clpA/B proteins. 697..711
BLOCKS BL00870I: Chaperonins clpA/B proteins. 755..767
DOMO DM01326: CHAPERONINSCLPA/B 2..89
DOMO DM01326: CHAPERONINSCLPA/B 91..172
DOMO DM00024: AAA-PROTEINFAMILY 174..325
DOMO DM00638: CHAPERONINSCLPA/B 327..414
DOMO DM00798: CHAPERONINSCLPA/B 416..500
DOMO DM00024: AAA-PROTEINFAMILY 502..668
DOMO DM00327: CHAPERONINSCLPA/B 677..806
Entrez Domain: 2 X 32 AA APPROXIMATE REPEATS. 19..124
Entrez Repetitive region: 1. 19..50
Entrez Repetitive region: 2. 93..124
Entrez Domain: I. 163..410
Entrez Domain: II. 471..662
Entrez np-binding site: ATP (POTENTIAL). 208..215
Entrez np-binding site: ATP (POTENTIAL). 545..552
PFAM clpA_B: Chaperonin clpA/B 470..794
PRINTS CLPPROTEASEA1: CLPA protease motif I - 2 541..559
PRINTS CLPPROTEASEA2: CLPA protease motif II - 586..604
PRINTS CLPPROTEASEA3: CLPA protease motif III - 615..633
PRINTS CLPPROTEASEA4: CLPA protease motif IV - 648..662
PRODOM PD174669: MECB_BACSU 1..23
PRODOM PD002024: CLPC(3) CLPB(2) 25..143
PRODOM PD202163: MECB_BACSU 145..174
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 176..317
PRODOM PD001382: CLPB(9) CLPA(3) CLPC(3) 319..353
PRODOM PD186056: CLPB(9) CLPA(3) CLPC(3) 355..388
PRODOM PD005402: CLPB(5) CLPC(3) UVRB(3) 390..452
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 471..791
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 208..215
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 545..552
PROSITE CLPAB_1: Chaperonins clpA/B signature 1. 295..307
PROSITE CLPAB_2: Chaperonins clpA/B signature 2. 571..589
__________________
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.28, P = 0.25
Identities = 22/40 (55%), Positives = 27/40 (67%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
MF RFTE+A KV + + LGHN +GTE ILLGL+ E
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41
Score = 86 (30.3 bits), Expect = 7.3, P = 1.0
Identities = 19/36 (52%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
+T +A KV S ++ LGH++VGTE ILLGLI E
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115
>gi|10172715|dbj|BAB03822.1| (AP001507) class III stress response-related
ATPase [Bacillus halodurans]
Length = 813
Frame 2 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | | | | 813
0 150 300 450 600 750
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.28, P = 0.25
Identities = 23/40 (57%), Positives = 27/40 (67%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
MF RFTE+A KV + + LGHN +GTE ILLGLI E
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIRE 41
Score = 86 (30.3 bits), Expect = 7.3, P = 1.0
Identities = 19/36 (52%), Positives = 25/36 (69%), Frame = +2
Query: 290 FTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
+T +A KV S ++ LGH++VGTE ILLGLI E
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115
>gi|7428218|pir||G72079 endopeptidase Clp ATP-binding chain C - Chlamydophila
pneumoniae (strain CWL029) >gi|4376719|gb|AAD18581.1| (AE001626)
ClpC Protease [Chlamydophila pneumoniae CWL029]
Length = 845
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 845
0 150 300 450 600 750
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 2.0, P = 0.86
Identities = 18/38 (47%), Positives = 27/38 (71%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLI 391
MFE+FT +A +V + ++ L HN++GTE ILLGL+
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLL 38
>gi|11265233|pir||G81590 ATP-dependent Clp proteinase, ATP-binding chain CP0316
[imported] - Chlamydophila pneumoniae (strain AR39)
>gi|7189244|gb|AAF38172.1| (AE002194) ATP-dependent Clp protease,
ATP-binding subunit [Chlamydophila pneumoniae AR39]
Length = 845
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 845
0 150 300 450 600 750
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 2.0, P = 0.86
Identities = 18/38 (47%), Positives = 27/38 (71%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLI 391
MFE+FT +A +V + ++ L HN++GTE ILLGL+
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLL 38
>gi|7428217|pir||C71533 endopeptidase Clp ATP-binding chain C - Chlamydia
trachomatis (serotype D, strain UW3/Cx) >gi|3328700|gb|AAC67879.1|
(AE001301) ClpC Protease ATPase [Chlamydia trachomatis]
Length = 854
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 854
0 150 300 450 600 750
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 2.0, P = 0.87
Identities = 18/38 (47%), Positives = 27/38 (71%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLI 391
MFE+FT +A +V + ++ L HN++GTE ILLGL+
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLL 38
>gi|11265231|pir||B81689 ATP-dependent Clp proteinase, ATP-binding chain ClpC,
TC0559 [imported] - Chlamydia muridarum (strain Nigg)
>gi|7190600|gb|AAF39398.1| (AE002324) ATP-dependent Clp protease,
ATP-binding subunit ClpC [Chlamydia muridarum]
Length = 870
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 870
0 150 300 450 600 750
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 2.1, P = 0.87
Identities = 18/38 (47%), Positives = 27/38 (71%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLI 391
MFE+FT +A +V + ++ L HN++GTE ILLGL+
Sbjct: 17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLL 54
>gi|7435728|pir||H72404 endopeptidase Clp, ATP-binding chain - Thermotoga
maritima (strain MSB8) >gi|4980695|gb|AAD35290.1|AE001705_1
(AE001705) ATP-dependent Clp protease, ATPase subunit [Thermotoga
maritima]
Length = 820
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 820
0 150 300 450 600 750
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 3.3, P = 0.96
Identities = 15/38 (39%), Positives = 27/38 (71%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLI 391
MF++F+EK ++ + +K LGH++VGTE +LL ++
Sbjct: 1 MFDKFSEKTAQIFVTAQEEAKELGHSYVGTEHLLLAIL 38
>gi|8978809|dbj|BAA98645.1| (AP002546) ClpC protease [Chlamydophila pneumoniae
J138]
Length = 845
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 845
0 150 300 450 600 750
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 4.5, P = 0.99
Identities = 18/38 (47%), Positives = 26/38 (68%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLI 391
MFE FT +A +V + ++ L HN++GTE ILLGL+
Sbjct: 1 MFETFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLL 38
>gi|7428216|pir||B70412 endopeptidase Clp ATP-binding chain - Aquifex aeolicus
>gi|2983728|gb|AAC07290.1| (AE000733) ATP-dependent Clp protease
[Aquifex aeolicus]
Length = 810
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 810
0 150 300 450 600 750
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 5.6, P = 1.0
Identities = 18/42 (42%), Positives = 29/42 (69%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGERN 403
MFE+FTE+A +V + + LGH+++G+E ILL LI + +
Sbjct: 1 MFEKFTERARQVILRAREEALELGHSYLGSEHILLALIKDED 42
>gi|1314297|gb|AAC44446.1| (U40604) ClpC ATPase [Listeria monocytogenes]
Length = 825
Frame 2 hits (HSPs): ___ ___
__________________________________________________
Database sequence: | | | | | | | 825
0 150 300 450 600 750
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 7.4, P = 1.0
Identities = 19/37 (51%), Positives = 25/37 (67%), Frame = +2
Query: 287 RFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
++T +A KV S ++ LGH +VGTE ILLGLI E
Sbjct: 79 QYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIRE 115
Score = 86 (30.3 bits), Expect = 7.4, P = 1.0
Identities = 20/40 (50%), Positives = 26/40 (65%), Frame = +2
Query: 278 MFERFTEKAIKVDYASPGXSKTLGHNFVGTEQILLGLIGE 397
MF RFT++A KV S + L H+ +GTE ILLGL+ E
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVRE 41
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.343 0.148 0.533
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.355 0.162 0.609
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.338 0.145 0.477
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.154 0.530
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.357 0.159 0.586
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.357 0.156 0.572
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 183 177 10. 76 3 12 22 0.11 34
31 0.11 37
+2 0 183 178 10. 76 3 12 22 0.11 34
31 0.11 37
+1 0 183 179 10. 76 3 12 22 0.11 34
31 0.12 37
-1 0 183 178 10. 76 3 12 22 0.11 34
31 0.11 37
-2 0 183 178 10. 76 3 12 22 0.11 34
31 0.11 37
-3 0 183 178 10. 76 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 32
No. of states in DFA: 597 (59 KB)
Total size of DFA: 209 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 176.27u 1.17s 177.44t Elapsed: 00:00:53
Total cpu time: 176.30u 1.23s 177.53t Elapsed: 00:00:53
Start: Wed Oct 3 10:18:12 2001 End: Wed Oct 3 10:19:05 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000