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Repeat Table for Prevotella intermedia 17

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
PI-TR-1 tandem 2.10 12168,12199 15 IGR0008  intergenic region 
PI-TR-2 tandem 2.80 63248,63269
63269,63309
22 IGR0047, IGR0047  intergenic region 
PI-TR-3 tandem 2.90 104872,104894
104894,104934
22 IGR0083, IGR0083  intergenic region 
PI-TR-4 tandem 3.00 108098,108143
108143,108164
108164,108164
22 IGR0086, PI0112 , IGR0086, PI0112   hypothetical protein
hypothetical protein 
PI-TR-5 tandem 3.00 122113,122158
122157,122177
22 IGR0099, PI0130 , IGR0099  hypothetical protein
intergenic region 
PI-TR-6 tandem 2.80 128449,128471
128471,128493
128493,128511
23 IGR0103, IGR0103, IGR0103  intergenic region 
PI-TR-7 tandem 2.00 137528,137557 15 PI0145   secDF export membrane protein 
PI-TR-8 tandem 1.90 148394,148435 22 PI0155 , IGR0120  conserved hypothetical protein
intergenic region 
PI-TR-9 tandem 3.20 152366,152410
152410,152435
21 IGR0123, IGR0123  intergenic region 
PI-TR-10 tandem 2.90 157158,157219 21 IGR0126  intergenic region 
PI-TR-11 tandem 1.90 157136,157180
157180,157219
44 IGR0126, IGR0126  intergenic region 
PI-TR-12 tandem 2.00 158399,158428 15 PI0163   conserved hypothetical protein 
PI-TR-13 tandem 3.00 200956,201001
201001,201048
201047,201090
46 PI0208 , PI0208 , PI0208   possible peptidase, M23/M37 family
possible peptidase, M23/M37 family
possible peptidase, M23/M37 family 
PI-TR-14 tandem 2.70 242939,242960
242960,242999
22 IGR0195, IGR0195  intergenic region 
PI-TR-15 tandem 2.50 294687,294743 22 PI0312 , IGR0238  hypothetical protein
intergenic region 
PI-TR-16 tandem 3.50 303668,303735
303734,303743
22 PI0322 , PI0322   hypothetical protein
hypothetical protein 
PI-TR-17 tandem 3.50 305902,305947
305946,305979
21 PI0323 , IGR0249, PI0323 , IGR0249  hypothetical protein
hypothetical protein
intergenic region 
PI-TR-18 tandem 2.20 364945,364966
364966,364992
22 PI0400 , PI0400   conserved hypothetical protein
conserved hypothetical protein 
PI-TR-19 tandem 1.90 370062,370100 20 PI0402 , IGR0307  conserved hypothetical protein
intergenic region 
PI-TR-20 tandem 3.80 389173,389217
389217,389240
389239,389255
22 IGR0322, IGR0322, IGR0322  intergenic region 
PI-TR-21 tandem 2.60 451370,451392
451392,451414
451414,451427
23 IGR0383, IGR0383, IGR0383  intergenic region 
PI-TR-22 tandem 3.40 471592,471665 22 IGR0400  intergenic region 
PI-TR-23 tandem 2.90 481236,481280
481280,481299
22 IGR0412, IGR0412  intergenic region 
PI-TR-24 tandem 2.40 488510,488533
488532,488554
488554,488562
23 IGR0419, IGR0419, IGR0419  intergenic region 
PI-TR-25 tandem 3.10 523491,523513
523513,523559
22 IGR0454, PI0579 , IGR0454  hypothetical protein
intergenic region 
PI-TR-26 tandem 2.90 523506,523569 22 PI0579 , IGR0454  hypothetical protein
intergenic region 
PI-TR-27 tandem 3.30 533574,533646 21 IGR0458  intergenic region 
PI-TR-28 tandem 2.70 537983,538094 42 PI0590   ribosomal large subunit pseudouridine synthase B 
PI-TR-29 tandem 2.60 540743,540765
540765,540787
540787,540800
23 IGR0463, IGR0463, IGR0463  intergenic region 
PI-TR-30 tandem 3.40 540743,540765
540765,540787
540787,540816
22 IGR0463, IGR0463, IGR0463  intergenic region 
PI-TR-31 tandem 2.70 547344,547389
547388,547403
22 IGR0470, IGR0470  intergenic region 
PI-TR-32 tandem 3.60 557294,557339
557338,557372
22 IGR0480, IGR0480  intergenic region 
PI-TR-33 tandem 3.00 569434,569498 22 IGR0489  intergenic region 
PI-TR-34 tandem 5.20 585699,585743
585743,585809
585809,585812
22 IGR0507, IGR0507, IGR0507  intergenic region 
PI-TR-35 tandem 2.60 585699,585787
585787,585813
44 IGR0507, IGR0507  intergenic region 
PI-TR-36 tandem 3.40 589515,589560
589559,589588
22 IGR0509, PI0648 , IGR0509  hypothetical protein
intergenic region 
PI-TR-37 tandem 3.30 610365,610407
610407,610502
42 PI0667 , PI0668 , PI0667 , PI0668   hypothetical protein
peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type (peptidylprolyl isomerase)
hypothetical protein
peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type (peptidylprolyl isomerase) 
PI-TR-38 tandem 3.00 613554,613618 22 IGR0532  intergenic region 
PI-TR-39 tandem 3.00 616328,616350
616350,616395
23 IGR0533, IGR0533  intergenic region 
PI-TR-40 tandem 2.80 618867,618911
618911,618929
22 IGR0536, IGR0536  intergenic region 
PI-TR-41 tandem 2.80 623301,623345
623345,623361
22 IGR0538, IGR0538  intergenic region 
PI-TR-42 tandem 3.20 623304,623373 21 IGR0538  intergenic region 
PI-TR-43 tandem 3.60 638621,638643
638643,638699
22 IGR0551, IGR0551  intergenic region 
PI-TR-44 tandem 2.60 646480,646592 44 IGR0557  intergenic region 
PI-TR-45 tandem 2.50 651768,651789
651789,651819
21 PI0714 , PI0714   conserved hypothetical protein
conserved hypothetical protein 
PI-TR-46 tandem 2.50 651953,652043
652043,652065
45 PI0714 , PI0714   conserved hypothetical protein
conserved hypothetical protein 
PI-TR-47 tandem 1.90 655663,655704 22 IGR0567  intergenic region 
PI-TR-48 tandem 1.90 665808,665823
665823,665837
16 PI0733 , PI0733   membrane protein; predicted exporter
membrane protein; predicted exporter 
PI-TR-49 tandem 2.80 719112,719174 22 IGR0614  intergenic region 
PI-TR-50 tandem 2.10 722579,722603 12 PI0784   possible amidase enhancer precursor 
PI-TR-51 tandem 2.50 729844,729899 22 PI0793 , IGR0621  ABC transporter, permease protein
intergenic region 
PI-TR-52 tandem 2.70 735863,735885
735885,735907
735907,735922
22 IGR0624, IGR0624, IGR0624  intergenic region 
PI-TR-53 tandem 3.00 746569,746632 21 IGR0633  intergenic region 
PI-TR-54 tandem 2.80 754675,754719
754719,754737
22 PI0815 , PI0815   hypothetical protein
hypothetical protein 
PI-TR-55 tandem 2.20 768288,768313 12 PI0831   hypothetical protein 
PI-TR-56 tandem 2.80 775520,775542
775542,775564
775564,775580
22 IGR0655, PI0841 , IGR0655, PI0841   hypothetical protein
hypothetical protein 
PI-TR-57 tandem 2.10 820446,820468
820468,820494
23 IGR0693, IGR0693  intergenic region 
PI-TR-58 tandem 7.50 872624,872789 22 IGR0737  intergenic region 
PI-TR-59 tandem 3.20 909834,909900
909900,909904
21 PI0983 , IGR0771, PI0983   hypothetical protein
hypothetical protein 
PI-TR-60 tandem 2.90 933750,933809 21 IGR0794  intergenic region 
PI-TR-61 tandem 2.10 940867,940894
940894,940895
14 PI1025 , IGR0803, PI1025   tRNA modification GTPase
tRNA modification GTPase 
PI-TR-62 tandem 3.60 960661,960727
960727,960739
22 PI1041 , PI1041 , IGR0818  hypothetical protein
hypothetical protein
intergenic region 
PI-TR-63 tandem 2.80 983283,983327
983327,983345
22 PI1064 , PI1064   hypothetical protein
hypothetical protein 
PI-TR-64 tandem 1.80 1022140,1022327 102 IGR0866  intergenic region 
PI-TR-65 tandem 7.90 1049394,1049460
1049460,1049504
1049504,1049526
1049526,1049548
1049548,1049566
22 IGR0890, IGR0890, IGR0890, IGR0890, IGR0890  intergenic region 
PI-TR-66 tandem 7.00 1049410,1049562 22 IGR0890  intergenic region 
PI-TR-67 tandem 2.30 1053343,1053370 12 PI1127   chloride channel protein 
PI-TR-68 tandem 2.70 1113331,1113375
1113375,1113390
22 PI1195 , PI1195   hypothetical protein
hypothetical protein 
PI-TR-69 tandem 2.80 1118058,1118080
1118080,1118118
22 IGR0955, IGR0955  intergenic region 
PI-TR-70 tandem 2.80 1148469,1148493
1148493,1148534
24 IGR0977, IGR0977  intergenic region 
PI-TR-71 tandem 4.80 1149816,1149902 18 PI1228   conserved hypothetical protein 
PI-TR-72 tandem 2.40 1149816,1149903 36 PI1228   conserved hypothetical protein 
PI-TR-73 tandem 2.30 1149834,1149916 36 PI1228   conserved hypothetical protein 
PI-TR-74 tandem 2.60 1170561,1170640
1170639,1170761
78 PI1246 , PI1246   conserved hypothetical protein; possible lipoprotein
conserved hypothetical protein; possible lipoprotein 
PI-TR-75 tandem 3.20 1170571,1170650
1170649,1170805
1170805,1170821
78 PI1246 , PI1246 , PI1246   conserved hypothetical protein; possible lipoprotein
conserved hypothetical protein; possible lipoprotein
conserved hypothetical protein; possible lipoprotein 
PI-TR-76 tandem 1.80 1170935,1171078 78 PI1246   conserved hypothetical protein; possible lipoprotein 
PI-TR-77 tandem 2.70 1196905,1196964 21 PI1281   hypothetical protein 
PI-TR-78 tandem 3.20 1220056,1220100
1220100,1220122
1220122,1220125
22 IGR1042, IGR1042, IGR1042  intergenic region 
PI-TR-79 tandem 3.60 1244142,1244181 11 PI1325 , IGR1061  conserved hypothetical protein
intergenic region 
PI-TR-80 tandem 3.60 1285897,1285919
1285919,1285941
1285941,1285975
22 IGR1094, IGR1094, IGR1094  intergenic region 
PI-TR-81 tandem 2.60 1337837,1337859
1337859,1337881
1337881,1337894
23 IGR1140, IGR1140, IGR1140  intergenic region 
PI-TR-82 tandem 3.70 1337830,1337851
1337851,1337874
1337874,1337910
22 IGR1140, IGR1140, IGR1140  intergenic region 
PI-TR-83 tandem 2.60 1349521,1349578 22 IGR1150  intergenic region 
PI-TR-84 tandem 2.80 1356121,1356165
1356165,1356183
22 PI1436 , PI1436   hypothetical protein
hypothetical protein 
PI-TR-85 tandem 2.80 1368324,1368368
1368368,1368384
22 IGR1160, IGR1160  intergenic region 
PI-TR-86 tandem 2.00 1368324,1368412
1368412,1368412
44 IGR1160, IGR1160  intergenic region 
PI-TR-87 tandem 3.60 1372776,1372842
1372842,1372855
22 PI1450 , IGR1164, PI1450   hypothetical protein
hypothetical protein 
PI-TR-88 tandem 2.60 1385210,1385254
1385254,1385267
22 PI1462 , IGR1173, PI1462   hypothetical protein
hypothetical protein 
PI-TR-89 tandem 3.60 1399635,1399678
1399678,1399715
22 IGR1183, IGR1183  intergenic region 
PI-TR-90 tandem 2.40 1409458,1409479
1409479,1409508
21 IGR1194, IGR1194  intergenic region 
PI-TR-91 tandem 2.00 1414168,1414203 18 IGR1198  intergenic region 
PI-TR-92 tandem 2.40 1456318,1456451
1456450,1456473
67 PI1537 , PI1537   predicted TPR-repeat-containing protein
predicted TPR-repeat-containing protein 
PI-TR-93 tandem 3.70 1463608,1463631
1463631,1463653
1463652,1463674
1463674,1463689
23 IGR1239, PI1544 , IGR1239, PI1544 , PI1544   hypothetical protein
hypothetical protein
hypothetical protein 
PI-TR-94 tandem 2.80 1465260,1465290 11 IGR1241  intergenic region 
PI-TR-95 tandem 2.40 1496288,1496310
1496310,1496332
1496332,1496341
23 IGR1263, IGR1263, IGR1263  intergenic region 
PI-TR-96 tandem 2.90 1500217,1500239
1500239,1500279
22 IGR1264, IGR1264  intergenic region 
PI-TR-97 tandem 1.90 1534118,1534159 22 PI1604 , IGR1291  hypothetical protein
intergenic region 
PI-TR-98 tandem 2.00 1542039,1542409 185 PI1615 , PI1616 , IGR1298  hypothetical protein
hypothetical protein
intergenic region 
PI-TR-99 tandem 2.10 1567730,1567760 15 IGR1324  intergenic region 
PI-TR-100 tandem 2.90 1587795,1587858 21 PI1673 , IGR1338  hypothetical protein
intergenic region 
PI-TR-101 tandem 4.90 1590798,1590906 22 IGR1341  intergenic region 
PI-TR-102 tandem 2.20 1590811,1590905 44 IGR1341  intergenic region 
PI-TR-103 tandem 3.80 1625847,1625929 22 IGR1370  intergenic region 
PI-TR-104 tandem 2.00 1631696,1631718
1631718,1631740
23 IGR1375, PI1716 , IGR1375  hypothetical protein
intergenic region 
PI-TR-105 tandem 3.90 1657432,1657476
1657476,1657498
1657498,1657516
22 IGR1393, IGR1393, IGR1393  intergenic region 
PI-TR-106 tandem 1.90 1657432,1657476
1657476,1657517
44 IGR1393, IGR1393  intergenic region 
PI-TR-107 tandem 2.00 1657538,1657581 22 IGR1393  intergenic region 
PI-TR-108 tandem 3.20 1662590,1662612
1662612,1662634
1662634,1662659
22 IGR1397, IGR1397, IGR1397  intergenic region 
PI-TR-109 tandem 2.40 1671823,1671876 22 IGR1404  intergenic region 
PI-TR-110 tandem 3.80 1671890,1671934
1671934,1671956
1671956,1671973
22 IGR1404, IGR1404, IGR1404  intergenic region 
PI-TR-111 tandem 2.20 1708591,1708635
1708635,1708639
22 IGR1423, IGR1423  intergenic region 
PI-TR-112 tandem 2.80 1724949,1724971
1724971,1724993
1724993,1725009
22 PI1792 , PI1792 , PI1792   hypothetical protein
hypothetical protein
hypothetical protein 
PI-TR-113 tandem 2.40 1733052,1733073
1733073,1733102
21 PI1799 , PI1799   30S ribosomal protein S2
30S ribosomal protein S2 
PI-TR-114 tandem 1.90 1738197,1738238 22 IGR1446  intergenic region 
PI-TR-115 tandem 5.60 1738798,1738930
1738930,1739063
1739062,1739328
1739326,1739458
1739458,1739533
131 PI1805 , PI1805 , PI1805 , PI1805 , PI1805   TPR repeat containing protein
TPR repeat containing protein
TPR repeat containing protein
TPR repeat containing protein
TPR repeat containing protein 
PI-TR-116 tandem 2.90 1738771,1739039
1739035,1739533
264 PI1805 , PI1805   TPR repeat containing protein
TPR repeat containing protein 
PI-TR-117 tandem 1.90 1743423,1743463 21 IGR1450  intergenic region 
PI-TR-118 tandem 2.10 1746706,1746745 19 PI1809 , IGR1450  outer membrane protein
intergenic region 
PI-TR-119 tandem 1.90 1769396,1769437 22 PI1829   hypothetical protein 
PI-TR-120 tandem 2.00 1773253,1773274
1773274,1773295
21 IGR1470, IGR1470  intergenic region 
PI-TR-121 tandem 2.80 12168,12212
12212,12228
22 IGR0008, IGR0008  intergenic region 
PI-TR-122 tandem 2.80 29220,29242
29242,29264
29264,29280
22 PI0025 , PI0025 , PI0025   two component system sensor histidine kinase
two component system sensor histidine kinase
two component system sensor histidine kinase 
PI-TR-123 tandem 1.90 36715,36800 45 PI0033   peptidylprolyl isomerase 
PI-TR-124 tandem 3.40 89040,89062
89062,89114
22 PI0090 , PI0090   amidophosphoribosyltransferase
amidophosphoribosyltransferase 
PI-TR-125 tandem 2.80 107807,107867 22 PI0110   ABC transport system, ATP-binding protein 
PI-TR-126 tandem 2.80 116754,116798
116798,116815
22 PI0124 , PI0124   outer membrane protein/protective antigen OMA87
outer membrane protein/protective antigen OMA87 
PI-TR-127 tandem 2.20 120571,120593
120593,120618
22 IGR0098, IGR0098  intergenic region 
PI-TR-128 tandem 3.00 149522,149545
149545,149557
12 PI0156 , PI0156   conserved hypothetical protein
conserved hypothetical protein 
PI-TR-129 tandem 2.00 151708,151729
151729,151750
21 PI0159 , PI0159   hypothetical protein
hypothetical protein 
PI-TR-130 tandem 2.50 176191,176259
176256,176357
66 PI0184 , PI0184   possible fibronectin type III domain protein
possible fibronectin type III domain protein 
PI-TR-131 tandem 2.60 176780,176847
176845,176949
66 IGR0143, IGR0143  intergenic region 
PI-TR-132 tandem 1.80 176517,176888 198 PI0184 , IGR0143  possible fibronectin type III domain protein
intergenic region 
PI-TR-133 tandem 2.20 176515,176918
176911,176949
197 PI0184 , IGR0143, IGR0143  possible fibronectin type III domain protein
intergenic region 
PI-TR-134 tandem 2.90 189789,189823 12 PI0197   acetate kinase 
PI-TR-135 tandem 2.80 245698,245758 22 PI0247   conjugative transposon protein, TraA 
PI-TR-136 tandem 2.80 277704,277748
277748,277765
22 IGR0228, PI0296 , IGR0228  hypothetical protein
intergenic region 
PI-TR-137 tandem 2.30 287685,287734 21 IGR0235  intergenic region 
PI-TR-138 tandem 2.80 317393,317437
317437,317455
22 PI0341 , PI0341   conserved hypothetical protein
conserved hypothetical protein 
PI-TR-139 tandem 2.30 330705,330755 22 PI0360   conserved hypothetical protein 
PI-TR-140 tandem 3.20 374315,374337
374336,374359
374359,374381
374381,374385
23 PI0408 , PI0408 , PI0408 , PI0408   hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein 
PI-TR-141 tandem 3.80 374315,374336
374336,374359
374359,374397
22 PI0408 , PI0408 , PI0408   hypothetical protein
hypothetical protein
hypothetical protein 
PI-TR-142 tandem 2.30 380183,380235 23 PI0412   primosomal protein N', replication factor Y 
PI-TR-143 tandem 2.10 382555,382601 22 PI0413   outer membrane protein 
PI-TR-144 tandem 2.20 436437,436477 19 PI0466   30S ribosomal protein S3 
PI-TR-145 tandem 2.80 483359,483381
483381,483403
483403,483419
22 PI0529 , PI0527 , PI0529 , PI0527 , PI0529 , PI0527   hypothetical protein
outer membrane efflux protein
hypothetical protein
outer membrane efflux protein
hypothetical protein
outer membrane efflux protein 
PI-TR-146 tandem 2.40 489125,489176 22 PI0534   conserved hypothetical protein; possible transposase 
PI-TR-147 tandem 2.10 504104,504134 15 PI0553   recombination protein 
PI-TR-148 tandem 3.20 508284,508347
508347,508350
20 PI0559 , PI0559   conserved hypothetical protein
conserved hypothetical protein 
PI-TR-149 tandem 2.40 508309,508353
508353,508360
22 PI0559 , PI0559   conserved hypothetical protein
conserved hypothetical protein 
PI-TR-150 tandem 4.70 541451,541472
541472,541516
541516,541553
22 PI0592 , PI0592 , PI0592   DNA mismatch repair protein
DNA mismatch repair protein
DNA mismatch repair protein 
PI-TR-151 tandem 3.10 547713,547913
547911,547917
66 PI0600 , PI0600   bifunctional purine biosynthesis protein, 5-aminoimidazole-4-carboxamide ribonucleotide(AICAR) transformylase/IMP cyclohydrolase
bifunctional purine biosynthesis protein, 5-aminoimidazole-4-carboxamide ribonucleotide(AICAR) transformylase/IMP cyclohydrolase 
PI-TR-152 tandem 2.80 555369,555413
555413,555429
22 PI0607 , PI0607   2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 
PI-TR-153 tandem 2.80 558879,558939 21 PI0610   conserved hypothetical protein 
PI-TR-154 tandem 2.00 560945,561294 174 PI0612   lysyl-tRNA synthetase 
PI-TR-155 tandem 3.00 569142,569201 20 PI0618   acyl-CoA dehydrogenase family protein 
PI-TR-156 tandem 2.00 3176,3217 21 PI0002   conserved hypothetical protein 


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