Homo sapiens THYMUS

Library Description

1st strand cDNA was primed with a NotI-oligo(dT) primer. Five prime end enriched, double-strand cDNA was digested with Not I and cloned into the Not I and EcoRV sites of the pCMVSPORT 6 vector. Library was not normalized.

Source: Genoscope, Genoscope - Centre National de Sequencage

Gene Content Analysis

3,483 ESTs from this library were grouped into 1,826 UniGene entries (putative genes) [UniGene build #217, 04-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM		UniGene Entry
2	574		Hs.578508	ADAM10 (ADAM10).
2	574		Hs.576612	ATP diphosphohydrolase.
2	574		Hs.575782	AT rich interactive domain 4B (RBP1-like), mRNA (cDNA clone IMAGE:4663973).
2	574		Hs.575631	CDNA FLJ55267 complete cds, highly similar to Tripartite motif-containing protein 14.
2	574		Hs.575032	MLF1 interacting protein, mRNA (cDNA clone IMAGE:4345397).
2	574		Hs.571177	RRM RNA binding protein Gry-rbp (GRY-RBP).
2	574		Hs.569816	Transcribed locus.
2	574		Hs.568951	Transcribed locus.
2	574		Hs.567539	Transcribed locus, strongly similar to NP_060961.3 COBW domain containing 1 [Homo sapiens].
2	574		Hs.567498	CDNA FLJ61056 complete cds.
2	574		Hs.567482	CDNA FLJ53144 complete cds, highly similar to Acyl-CoA dehydrogenase family member 9, mitochondrial precursor (EC 1.3.99.-).
2	574		Hs.567424	CDNA FLJ33409 fis, clone BRACE2010598, highly similar to Fas apoptotic inhibitory molecule 2.
2	574		Hs.567380	Far upstream element (FUSE) binding protein 1, mRNA (cDNA clone IMAGE:4330984).
2	574		Hs.567352	Transcribed locus, strongly similar to NP_084027.1 ribosomal protein L18A [Mus musculus].
2	574		Hs.561432	Cri-du-chat region mRNA, clone NIBB11.
2	574		Hs.558364	Origin recognition complex subunit 4 (ORC4L).
2	574		Hs.557850	CDNA FLJ54763 complete cds, highly similar to DENN domain-containing protein 2D.
2	574		Hs.557550	Nucleolar phosphoprotein B23, 5'UTR region.
2	574		Hs.556986	CDNA FLJ36703 fis, clone UTERU2009283, moderately similar to PUTATIVE GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE (EC 6.3.5.1).
2	574		Hs.555973	TR4 orphan receptor.
2	574		Hs.5476	CDNA FLJ75665 complete cds, highly similar to Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), transcript variant 1, mRNA.
2	574		Hs.546299	SnRNA activating protein complex 50kD subunit (SNAP50).
2	574		Hs.546288	Ribosomal protein S9.
2	574		Hs.546285	(xs13) mRNA, 284bp.
2	574		Hs.546250	Dynein, cytoplasmic 1, intermediate chain 2 (DYNC1I2), mRNA.
2	574		Hs.534847	Complement component C4B mRNA, partial.
2	574		Hs.534679	CDNA clone IMAGE:40131669.
2	574		Hs.534453	CDNA FLJ57958 complete cds, highly similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13 (EC 1.6.5.3).
2	574		Hs.534338	Protein phosphatase X.
2	574		Hs.534307	Cyclin D3 (CCND3), transcript variant 3, mRNA.
2	574		Hs.533624	H3 histone, family 3A, mRNA (cDNA clone MGC:47761 IMAGE:6014954).
2	574		Hs.533514	CDNA FLJ59356 complete cds, highly similar to N-acetylserotonin O-methyltransferase-like protein.
2	574		Hs.533479	Lysophospholipase II, mRNA (cDNA clone MGC:9106 IMAGE:3845764).
2	574		Hs.533474	Homo sapiens, clone IMAGE:3450003, mRNA.
2	574		Hs.533282	MRNA.
2	574		Hs.533055	P300/CBP-associated factor (P/CAF).
2	574		Hs.532824	RP1 homolog mRNA, 3'UTR region.
2	574		Hs.5327	CDNA FLJ20582 fis, clone KAT12156.
2	574		Hs.532491	Cryptochrome 2 (photolyase-like), mRNA (cDNA clone MGC:43402 IMAGE:5266781).
2	574		Hs.532359	Ribosomal protein L5.
2	574		Hs.531330	COBW domain-containing protein.
2	574		Hs.531111	YLP motif containing 1, mRNA (cDNA clone IMAGE:3835908).
2	574		Hs.530539	R kappa B mRNA.
2	574		Hs.530436	Unc-18homologue.
2	574		Hs.529948	KIAA0301 gene.
2	574		Hs.529782	P97.
2	574		Hs.529631	Ribosomal protein L35a.
2	574		Hs.529178	Zinc finger protein 512 (ZNF512), mRNA.
2	574		Hs.528763	U2 snRNP-specific A' protein.
2	574		Hs.528305	CDNA FLJ77506 complete cds, highly similar to Homo sapiens KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 (KDELR3), transcript variant 1, mRNA.
2	574		Hs.527077	T cell receptor, clone IGRB40.
2	574		Hs.525626	KIAA0602 protein.
2	574		Hs.525600	90-kDa heat-shock protein.
2	574		Hs.525459	Alpha-KG-E2 mRNA for mitochondrial dihydrolipoamide succinyltransferase.
2	574		Hs.525163	Ankyrin repeat domain 10, mRNA (cDNA clone IMAGE:5752308).
2	574		Hs.524920	Partial unknown mRNA from drug-resistant melanoma cells, 3'UTR, clone DMS-8.
2	574		Hs.524599	Full length insert cDNA clone YZ83B08.
2	574		Hs.524183	CDNA: FLJ21041 fis, clone CAE10652.
2	574		Hs.524009	CDNA FLJ57947 complete cds, highly similar to L-aminoadipate-semialdehydedehydrogenase-phosphopantetheinyl transferase (EC 2.7.8.-).
2	574		Hs.523789	Trophoblast MHC class II suppressor mRNA, complete sequence.
2	574		Hs.523739	Tip associating protein (TAP).
2	574		Hs.523500	T-cell surface antigen CD2 (T11).
2	574		Hs.523370	Spindle pole body protein spc97 homolog GCP2.
2	574		Hs.523252	Inositol 1,4,5-triphosphate receptor interacting protein, mRNA (cDNA clone MGC:39629 IMAGE:5265379).
2	574		Hs.522885	Zinc finger protein 32 (ZNF32), transcript variant 1, mRNA.
2	574		Hs.522817	CDM mRNA.
2	574		Hs.522616	Ubiquitous TPR motif, X isoform (UTX) mRNA, alternative transcript 2.
2	574		Hs.522507	F-box and WD repeat domain containing 5 (FBXW5), mRNA.
2	574		Hs.522472	KIAA0043.
2	574		Hs.522449	CDNA FLJ90393 fis, clone NT2RP2005597, highly similar to Protein O-mannosyl-transferase 1 (EC 2.4.1.109).
2	574		Hs.521973	MG21.
2	574		Hs.520943	CDNA FLJ60708 complete cds, highly similar to Eukaryotic translation initiation factor 4H.
2	574		Hs.520313	CD164 molecule, sialomucin, mRNA (cDNA clone IMAGE:4838910).
2	574		Hs.520026	G7a mRNA for valyl-tRNA synthetase.
2	574		Hs.518460	KIAA0109 gene.
2	574		Hs.518450	CDNA FLJ76709 complete cds, highly similar to Homo sapiens Huntington disease-associated protein (HD) mRNA.
2	574		Hs.518250	CDNA FLJ77708 complete cds, highly similar to Homo sapiens coatomer protein complex, subunit gamma (COPG), mRNA.
2	574		Hs.518138	KIAA0040, mRNA (cDNA clone IMAGE:5229068).
2	574		Hs.517499	GRB2-related adaptor protein 2, mRNA (cDNA clone MGC:27357 IMAGE:4672797).
2	574		Hs.517373	Protoporphyrinogen oxidase.
2	574		Hs.517338	Vacuolar proton ATPase, subunit E.
2	574		Hs.517262	Putative DNA binding protein (son-b).
2	574		Hs.517228	Clone 23612 mRNA sequence.
2	574		Hs.517168	KIAA0120.
2	574		Hs.516837	SMG-5.
2	574		Hs.516707	CDNA FLJ90502 fis, clone NT2RP3004075.
2	574		Hs.516253	CDNA clone IMAGE:5270493.
2	574		Hs.515890	Yippee protein.
2	574		Hs.5158	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa, mRNA (cDNA clone MGC:20029 IMAGE:4562773).
2	574		Hs.515662	MRNA; cDNA DKFZp547H249 (from clone DKFZp547H249).
2	574		Hs.514870	H+-ATP synthase subunit b.
2	574		Hs.514535	CDNA FLJ53509 complete cds, highly similar to Galectin-3-binding protein precursor.
2	574		Hs.513126	CDNA FLJ10719 fis, clone NT2RP3001109.
2	574		Hs.513039	SIN3 homolog A, transcription regulator (yeast) (SIN3A), mRNA.
2	574		Hs.512841	CDNA FLJ51610 complete cds, highly similar to Heparan-sulfate 6-O-sulfotransferase 1 (EC2.8.2.-).
2	574		Hs.512465	SURF-4 protein.
2	574		Hs.511797	Non imprinted in Prader-Willi/Angelman syndrome 1 (NIPA1), transcript variant 2, mRNA.
2	574		Hs.510409	Cyclin K, mRNA (cDNA clone MGC:9113 IMAGE:3907416).
2	574		Hs.509666	Transcribed locus, strongly similar to NP_113751.3 Y box binding protein 1 [Rattus norvegicus].
2	574		Hs.509414	Kinectin.

Source: NCBI UniGene

EST Sequences

4,466 EST sequences from this library have been submitted to the public sequence database as of 04-Dec-2008.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

• thymus
• unknown developmental stage
• oligo-dT primed

Source: NCBI Clone Registry