BLASTP 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= YMR178W YMR178W, Chr XIII from 618478-619302
         (274 letters)

Database: nr
           361,503 sequences; 110,384,460 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2497175|sp|Q03219|YM44_YEAST HYPOTHETICAL 31.1 KD PROTEIN IN...   562  e-160
gi|3879167|emb|CAA91346| (Z66515) similar to FAD-1 like protein...    95  4e-19
gi|3256842|gnl|PID|d1030468 (AP000002) 255aa long hypothetical ...    95  6e-19
gi|2648274 (AE000949) competence-damage protein, putative [Arch...    94  8e-19
gi|1705866|sp|P46323|CINA_BACSU PUTATIVE COMPETENCE-DAMAGE PROT...    76  2e-13
gi|1842440 (U87792) CinA [Bacillus subtilis]                          76  3e-13
gi|1788583 (AE000315) orf, hypothetical protein [Escherichia co...    71  8e-12
gi|2225959|emb|CAB10034| (Z97193) cinA [Mycobacterium tuberculo...    64  8e-10
gi|625176 (L36131) colligrin [Streptococcus pneumoniae] >gi|109...    61  9e-09
gi|1705867|sp|P54184|CINA_STRPN PUTATIVE COMPETENCE-DAMAGE PROT...    61  9e-09
gi|1707791|emb|CAA69548| (Y08257) orf c04019 [Sulfolobus solfat...    61  1e-08
gi|2251087|gnl|PID|d1022174 (AB005471) CinA [Deinococcus radiod...    58  6e-08
gi|1710188 (U79241) unknown [Homo sapiens]                            55  7e-07
gi|1001672|gnl|PID|d1011058 (D64002) hypothetical protein [Syne...    52  4e-06
gi|2650482 (AE001095) molybdenum cofactor biosynthesis protein ...    46  2e-04

>gi|2497175|sp|Q03219|YM44_YEAST HYPOTHETICAL 31.1 KD PROTEIN IN
           SIP18-SPT21 INTERGENIC REGION >gi|1078525|pir||S55125
           hypothetical protein YMR178w - yeast (Saccharomyces
           cerevisiae) >gi|854448|emb|CAA89911| (Z49808) unknown
           [Saccharomyces cerevisiae]
           Length = 274
           
 Score =  562 bits (1434), Expect = e-160
 Identities = 274/274 (100%), Positives = 274/274 (100%)

Query: 1   MVKVTAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLV 60
           MVKVTAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLV
Sbjct: 1   MVKVTAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLV 60

Query: 61  KNYDFIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMRHKSDPEARLDADALKAH 120
           KNYDFIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMRHKSDPEARLDADALKAH
Sbjct: 61  KNYDFIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMRHKSDPEARLDADALKAH 120

Query: 121 YQMATMPKGTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLKAFTPTLKKIYNLD 180
           YQMATMPKGTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLKAFTPTLKKIYNLD
Sbjct: 121 YQMATMPKGTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLKAFTPTLKKIYNLD 180

Query: 181 KDPREYVRYFVRTHLTESQISKELKLIQDESTKVSEAIKIGSYPHFGMGFNTVSILGEKK 240
           KDPREYVRYFVRTHLTESQISKELKLIQDESTKVSEAIKIGSYPHFGMGFNTVSILGEKK
Sbjct: 181 KDPREYVRYFVRTHLTESQISKELKLIQDESTKVSEAIKIGSYPHFGMGFNTVSILGEKK 240

Query: 241 DDSYLKSIVNRVVNNLEGEVISSELENKFSNQES 274
           DDSYLKSIVNRVVNNLEGEVISSELENKFSNQES
Sbjct: 241 DDSYLKSIVNRVVNNLEGEVISSELENKFSNQES 274


>gi|3879167|emb|CAA91346| (Z66515) similar to FAD-1 like protein;
           cDNA EST yk313h1.5 comes from this gene; cDNA EST
           yk457a9.3 comes from this gene; cDNA EST yk457a9.5 comes
           from this gene [Caenorhabditis elegans]
           Length = 519
           
 Score = 95.2 bits (233), Expect = 4e-19
 Identities = 76/273 (27%), Positives = 129/273 (46%), Gaps = 26/273 (9%)

Query: 5   TAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYD 64
           TAA ++IGDE+L G   DTNS F  K     G+ +++I+ IGDD ++I   V+     YD
Sbjct: 15  TAAILVIGDEILKGTTRDTNSHFLCKRLHKLGVNIRKISVIGDDISEISREVQSASGAYD 74

Query: 65  FIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMRH-------KSDPEA---RLDA 114
           ++I++GG+GPTHDD TY  +A +F    +  +E ++ +         K   E     L+ 
Sbjct: 75  YVITSGGVGPTHDDKTYLGLAHAFTDQMQFSDEIRQAVNRFLPTYTAKKRAEGVGEGLEE 134

Query: 115 DALKAHYQMATMPK------GTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLKA 168
               A  ++ T+PK      GT   N  +      P+  IS+ +  LPG+P+   R   A
Sbjct: 135 AVRLATEKLCTIPKMSQLLWGTQKINGSLST---FPVVRISN-VVALPGVPKFCER---A 187

Query: 169 FTPTLKKIYNLDKDPREYVRYFVRTHLTESQISKELKLIQDESTKVSEAIKIGSYPHFGM 228
           F     +++ ++ + +      + T L E   SK  KL    +      ++IGSYP    
Sbjct: 188 FDELQDQLFPIE-ERQSLCFETLYTDLDEFDFSK--KLTDLAAQFEDRNVQIGSYPELKN 244

Query: 229 GFNTVSILGEKKDDSYLKSIVNRVVNNLEGEVI 261
            F    +  E +    ++++V  +   L G ++
Sbjct: 245 KFFKTKLTIETESSETMEAVVTSLRELLAGHIV 277


>gi|3256842|gnl|PID|d1030468 (AP000002) 255aa long hypothetical
           competence-damage protein [Pyrococcus horikoshii]
           Length = 255
           
 Score = 94.8 bits (232), Expect = 6e-19
 Identities = 80/267 (29%), Positives = 132/267 (48%), Gaps = 24/267 (8%)

Query: 1   MVKVTAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLV 60
           MV V A  I +GDE+L G  VD+NS + A+   + G  ++ I T+GDD  +I + VR  +
Sbjct: 1   MVLVLAEIITVGDELLTGNTVDSNSAYIAQRLTEKGFWVRRITTVGDDVKEIENAVREAI 60

Query: 61  -KNYDFIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMRHKSDPEARL----DAD 115
            +  + +I +GG+GPTHDD+T   +A +     +L E+C ER++   +   R     D  
Sbjct: 61  SRKPEVLIISGGLGPTHDDVTMLGVANAIGRKLKLCEDCLERIKEFYEELHRKGLIDDPT 120

Query: 116 ALKAHYQMATMPKGTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLKAFTPTLKK 175
             +A  +MA +P+G+   N          +     K++ILPG+P+    ML++       
Sbjct: 121 LNEARKKMAYLPEGSEPLNNTEGAAPGAYVEYEGVKIFILPGMPREMKAMLES------- 173

Query: 176 IYNLDKDPREYVRYFVRTHLTESQISKELKLIQD-ESTKVSEAIKIGSYPHFGMGFNTVS 234
               +  PR   R FV+     ++I+ E KL    E T     +KI S P  G G   + 
Sbjct: 174 ----EVLPRLGERKFVQKKFL-AEITDESKLAPILEDTIERFKVKIHSSPK-GFG-KYIG 226

Query: 235 ILGEKKDDSYLKSIVNRVVNNLEGEVI 261
           I+   +DD     ++ +V+  +EG+ I
Sbjct: 227 IIIFAEDD----EVIGKVIRYIEGKGI 249


>gi|2648274 (AE000949) competence-damage protein, putative
           [Archaeoglobus fulgidus]
           Length = 229
           
 Score = 94.4 bits (231), Expect = 8e-19
 Identities = 68/233 (29%), Positives = 119/233 (50%), Gaps = 26/233 (11%)

Query: 9   IIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYDFIIS 68
           I +G+E+L+G + +TN+ + AK     G ++K+I TI DD   I + VR+  K  DF++ 
Sbjct: 6   ISVGNEILSGDITNTNAAYMAKKLTRAGHKVKKIITIPDDVNIIAEEVRKASKEADFVLV 65

Query: 69  TGGIGPTHDDITYECMAKSFNLPCELDEECKERMRHKSDPEARLDADALKAHYQMATMPK 128
           TGG+G THDD+T E +A++FN    + +E  E +   S  E        +A  +++++P+
Sbjct: 66  TGGLGATHDDVTAEGIARAFNRKLVISKEVYEWLSKLSKNE--------EAVRKISSVPE 117

Query: 129 GTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLKAFTPTLKKIYNLDKDPREYVR 188
           G+ +    V +D+      I   + ++PG+P   A M   F   L++      +  EY  
Sbjct: 118 GSEI----VWNDVGAAPAFIVENVAVMPGVP---AEMENTFEKILERF-----EKGEYHE 165

Query: 189 YFVRTHLTESQISKELKLIQDESTKVSEAIKIGSYPHFGMGFNTVSILGEKKD 241
             V+ +  E +I  +L  +  ++  V    +IGSYP    G+  V   G  K+
Sbjct: 166 EVVKVNGFEVKIVDKLNQVVRDNPDV----EIGSYPK--PGYVMVKFSGRDKE 212


>gi|1705866|sp|P46323|CINA_BACSU PUTATIVE COMPETENCE-DAMAGE PROTEIN
           >gi|1314847 (U56238) CinA [Bacillus subtilis]
           >gi|2634065|emb|CAB13566| (Z99112) competence-damage
           inducible protein [Bacillus subtilis]
           Length = 416
           
 Score = 76.1 bits (184), Expect = 2e-13
 Identities = 61/222 (27%), Positives = 100/222 (44%), Gaps = 34/222 (15%)

Query: 6   AACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYDF 65
           A  I +G E+L G++ +TN+ F +K   + G+ +     +GD+  ++   +R   +  DF
Sbjct: 7   AEIIAVGSELLLGQIANTNAQFISKQLAEIGVHVFYHTAVGDNPERLKQVIRIAEERSDF 66

Query: 66  IISTGGIGPTHDDITYECMAKSFNLPCELDEEC-------KERMRHKSDPEARLDA---- 114
           II +GG+GPT DD+T E +A +   P  L++E         +R +    P  R  A    
Sbjct: 67  IIFSGGLGPTKDDLTKETIANTLGRPLVLNDEAFQSIEDYPKRTKRTMSPNNRKQALVIE 126

Query: 115 --DALKAHYQMATMPKGTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARML--KAFT 170
             D L  H+ MA      +   YY+                +LPG P     M   +A  
Sbjct: 127 GSDVLANHFGMAPGMLTEHESRYYM----------------LLPGPPSELRPMFENEAKP 170

Query: 171 PTLKKIYNLDKDPREYVRYFVRTHLTESQISKELKLIQDEST 212
             LKK+ + +K     +R+F    + ESQ+  +L+ I D  T
Sbjct: 171 LLLKKMGSNEKIVSTVLRFF---GIGESQLEPDLEDIIDAQT 209


>gi|1842440 (U87792) CinA [Bacillus subtilis]
           Length = 416
           
 Score = 75.7 bits (183), Expect = 3e-13
 Identities = 61/222 (27%), Positives = 100/222 (44%), Gaps = 34/222 (15%)

Query: 6   AACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYDF 65
           A  I +G E+L G++ +TN+ F +K   + G+ +     +GD+  ++   +R   +  DF
Sbjct: 7   AEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDF 66

Query: 66  IISTGGIGPTHDDITYECMAKSFNLPCELDEECKE-------RMRHKSDPEARLDA---- 114
           II +GG+GPT DD+T E +A +   P  L++E  +       R +    P  R  A    
Sbjct: 67  IIFSGGLGPTKDDLTKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIE 126

Query: 115 --DALKAHYQMATMPKGTNVKNYYVCDDLWVPICSISHKMYILPGIPQLFARML--KAFT 170
             D L  H+ MA      +   YY+                +LPG P     M   +A  
Sbjct: 127 GSDVLANHFGMAPGMLTEHESRYYM----------------LLPGPPSELRPMFENEAKP 170

Query: 171 PTLKKIYNLDKDPREYVRYFVRTHLTESQISKELKLIQDEST 212
             LKK+ + +K     +R+F    + ESQ+  +L+ I D  T
Sbjct: 171 LLLKKMGSNEKIVSTVLRFF---GIGESQLEADLEDIIDAQT 209


>gi|1788583 (AE000315) orf, hypothetical protein [Escherichia coli]
           >gi|1799602|gnl|PID|d1016801 (D90856) PUTATIVE
           COMPETENCE-DAMAGE PROTEIN. [Escherichia coli]
           Length = 400
           
 Score = 71.0 bits (171), Expect = 8e-12
 Identities = 48/173 (27%), Positives = 82/173 (46%), Gaps = 4/173 (2%)

Query: 12  GDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYDFIISTGG 71
           GDEVL+G++VDTN+ + A + F  G+ L    T+GD+   +V  +R   ++ D +I  GG
Sbjct: 10  GDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDDLVTILRERSQHADVLIVNGG 69

Query: 72  IGPTHDDITYECMAKSFNLPCELDEECKERMRHKSDPEARLDADALKAHYQMATMPKGTN 131
           +GPT DD++    A +      L E   + M        R+ A    ++ + A +P    
Sbjct: 70  LGPTSDDLSALAAATAKGEGLVLHEAWLKEMERYFHERGRVMA---PSNRKQAELPASAE 126

Query: 132 VKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLK-AFTPTLKKIYNLDKDP 183
             N  V       +      M+  PG+P  F  M++    P L++ ++L + P
Sbjct: 127 FINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVMVEHEILPRLRERFSLPQPP 179


>gi|2225959|emb|CAB10034| (Z97193) cinA [Mycobacterium tuberculosis]
           Length = 430
           
 Score = 64.4 bits (154), Expect = 8e-10
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 11/141 (7%)

Query: 2   VKVTAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLV- 60
           V   A  +I G EVL G+V D N  + A    + G++L  I   GD    I   +R +  
Sbjct: 3   VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62

Query: 61  KNYDFIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERM---------RHKSDPEAR 111
           +  D I+++GG+GPT DD+T E +A+       LD+E + R+         R+ +   A 
Sbjct: 63  QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122

Query: 112 LDADALKAHYQMATMPKGTNV 132
            D+    A+ + A +P G+ V
Sbjct: 123 FDS-IRAANRKQAMIPAGSQV 142


>gi|625176 (L36131) colligrin [Streptococcus pneumoniae]
           >gi|1093015|prf||2102309A exp10 gene [Streptococcus
           pneumoniae]
           Length = 418
           
 Score = 60.9 bits (145), Expect = 9e-09
 Identities = 27/97 (27%), Positives = 54/97 (54%)

Query: 6   AACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYDF 65
           A  I +G E+L G++V+TN+ F ++   + G+ +     +GD+E +++  +    +    
Sbjct: 3   AEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSLLEIASQRSSL 62

Query: 66  IISTGGIGPTHDDITYECMAKSFNLPCELDEECKERM 102
           +I TGG+G T DD+T + +AK        D + +E++
Sbjct: 63  VILTGGLGATEDDLTKQTLAKFLGKALVFDPQAQEKL 99


>gi|1705867|sp|P54184|CINA_STRPN PUTATIVE COMPETENCE-DAMAGE PROTEIN
           (EXPORTED PROTEIN 10) >gi|995565|emb|CAA84071| (Z34303)
           CinA protein [Streptococcus pneumoniae]
           Length = 418
           
 Score = 60.9 bits (145), Expect = 9e-09
 Identities = 27/97 (27%), Positives = 54/97 (54%)

Query: 6   AACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYDF 65
           A  I +G E+L G++V+TN+ F ++   + G+ +     +GD+E +++  +    +    
Sbjct: 3   AEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSLLEIASQRSSL 62

Query: 66  IISTGGIGPTHDDITYECMAKSFNLPCELDEECKERM 102
           +I TGG+G T DD+T + +AK        D + +E++
Sbjct: 63  VILTGGLGATEDDLTKQTLAKFLGKALVFDPQAQEKL 99


>gi|1707791|emb|CAA69548| (Y08257) orf c04019 [Sulfolobus
           solfataricus]
           Length = 272
           
 Score = 60.5 bits (144), Expect = 1e-08
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 6   AACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLV-KNYD 64
           A  I IG+EVL+GK V+TN++   +     G  ++ I  + D+  +I    R  + +   
Sbjct: 14  AEIITIGNEVLSGKTVNTNASHIGRRLTSLGFTVRRITAVMDEVDEIASAFREAIDRKPR 73

Query: 65  FIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMRHKSDPEARLDADALKAHYQMA 124
            I+S+GG+GPT DD T E +AK+  +  EL++   + +  K         +  K   +MA
Sbjct: 74  VIVSSGGLGPTWDDKTAEGLAKALGVNLELNKTAFDMILEKYMTRKIPITEERK---KMA 130

Query: 125 TMPKGT--NVKNYYVCDDLWVPICSISHKMYILPGIPQLFARMLKAF 169
            MP G      N  +   ++V   +I   +   PG+P+    +L+ F
Sbjct: 131 YMPYGAIPVENNEGIAPGIYVYHNNID--ILATPGVPREMENVLENF 175


>gi|2251087|gnl|PID|d1022174 (AB005471) CinA [Deinococcus
          radiodurans]
          Length = 404
          
 Score = 58.2 bits (138), Expect = 6e-08
 Identities = 27/80 (33%), Positives = 47/80 (58%)

Query: 6  AACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNYDF 65
          A  I +G E+L G++VD+N+ F A+   + G+ L     +GD+  ++ + +   +   D 
Sbjct: 4  AEIISVGTELLFGEIVDSNAAFLARELGERGVTLHRKTVLGDNLGRVSEGLALALSRADL 63

Query: 66 IISTGGIGPTHDDITYECMA 85
          +I  GG+GPT DD+T E +A
Sbjct: 64 VIVGGGLGPTDDDLTREAIA 83


>gi|1710188 (U79241) unknown [Homo sapiens]
           Length = 437
           
 Score = 54.7 bits (129), Expect = 7e-07
 Identities = 42/207 (20%), Positives = 93/207 (44%), Gaps = 27/207 (13%)

Query: 45  IGDDETQIVDTVRRLVKNYDFIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMRH 104
           + D+   I   V      +  +++ GGIGPTHDD+T+E +A++F           + ++ 
Sbjct: 2   VPDEVATIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFG----------DELKP 51

Query: 105 KSDPEARLDADALKAHYQMATMPKGTNVKNYYVCD-----DLWVPICSISHKMYILPGIP 159
               EA   A   +   +++ +P  ++ + +Y  D         P+ S+   +Y+ PGIP
Sbjct: 52  HPKLEAATKALGGEGWEKLSLVP--SSARLHYGTDPCTGQPFRFPLVSV-RNVYLFPGIP 108

Query: 160 QLFARMLKAFTPTLKKIYNLDKDPREYVRYFVRTHLTESQISKELKLIQDESTKVSEAIK 219
           +L  R+L+        +  L ++P   V++  +     +  +    ++ +        + 
Sbjct: 109 ELLRRVLEG-------MKGLFQNPA--VQFHSKELYVAADEASIAPILAEAQAHFGRRLG 159

Query: 220 IGSYPHFGMGFNTVSILGEKKDDSYLK 246
           +GSYP +G  +  V +  + +++  L+
Sbjct: 160 LGSYPDWGSNYYQVKLTLDSEEEGPLE 186


>gi|1001672|gnl|PID|d1011058 (D64002) hypothetical protein
          [Synechocystis sp.]
          Length = 416
          
 Score = 52.3 bits (123), Expect = 4e-06
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 4  VTAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKNY 63
          + A  I +G E+L G+++++NS + A+     GI       +GD+  +I   +    +  
Sbjct: 1  MAAEIICVGTELLLGEILNSNSQYLAQELARLGIPHYFQTVVGDNPERIKRAIAIARERA 60

Query: 64 DFIISTGGIGPTHDDITYECMAKSFNLPCE 93
            +I TGG+GPT DD+T E +A  F  P +
Sbjct: 61 QILIFTGGLGPTPDDLTTETIADFFRTPLQ 90


>gi|2650482 (AE001095) molybdenum cofactor biosynthesis protein
           (moeA-3) [Archaeoglobus fulgidus]
           Length = 400
           
 Score = 46.5 bits (108), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 43/82 (52%)

Query: 3   KVTAACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTVRRLVKN 62
           ++ AA    GDE+  G + D+NS   + +    G ++  +   GDD  ++ + V + V++
Sbjct: 178 RLRAAVFSNGDEIKKGIIADSNSAMISAFLRKLGCEVHFLGVAGDDAEEVREMVEKGVRD 237

Query: 63  YDFIISTGGIGPTHDDITYECM 84
           YD ++++GG+     D   + +
Sbjct: 238 YDAVLTSGGVSVGEKDYVVKAL 259


  Database: nr
    Posted date:  Mar 13, 1999  7:20 PM
  Number of letters in database: 110,384,460
  Number of sequences in database:  361,503
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61059066
Number of Sequences: 361503
Number of extensions: 2558434
Number of successful extensions: 6198
Number of sequences better than 1.0e-03: 15
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6178
Number of HSP's gapped (non-prelim): 16
length of query: 274
length of database: 110384460
effective HSP length: 54
effective length of query: 220
effective length of database: 90863298
effective search space: 19989925560
effective search space used: 19989925560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 103 (44.5 bits)