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Treponema denticola Search Results

Record: 1 of 1 MiniMap

Gene ID:TDE0138DNA Molecule Name: 1 GenBank ID: 42525657Gene Name: adaS Definition: alkyl-dihydroxyacetonephosphate synthaseCellular Location: Cytoplasm [Evidence]Gene Start: 158361Gene Stop: 160118Gene Length: 1758Molecular Weight*: 66697pI*:Net Charge*:EC: 2.5.1.26 Functional Class: Other categories; Other Gene Ontology:Pathway: pathway table Glycerolipid metabolismComment:View in HOMD Genome ViewerBlast Summary: PSI-Blast Search TDE0138 has significant similarity to the Treponema pallidum gene TP0090 (9e-04). TDE0138 has no significant similarity (BLAST p-value < 1e-3) to a Borrelia burgdorferi gene.Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|42525657|ref|NP_970755.1| alkyldihydroxyacetonephosphate... 1216 0.0 gi|106887004|ref|ZP_01354327.1| FAD linked oxidase-like [Cl... 664 0.0 gi|121542858|ref|ZP_01674570.1| alkyldihydroxyacetonephosph... 548 e-154 gi|118616997|ref|YP_905329.1| flavoprotein [Mycobacterium u... 291 9e-77 gi|15841744|ref|NP_336781.1| alkyl-dihydroxyacetonephosphat... 283 3e-74 gi|21219198|ref|NP_624977.1| flavoprotein [Streptomyces coe... 281 8e-74 gi|108800340|ref|YP_640537.1| Alkylglycerone-phosphate synt... 279 3e-73 gi|118472412|ref|YP_888609.1| flavoprotein [Mycobacterium s... 278 6e-73 gi|45657542|ref|YP_001628.1| alkylglycerone-phosphate synth... 277 2e-72 gi|24214962|ref|NP_712443.1| Alkyldihydroxyacetonephosphate... 277 2e-72COGS Summary: COGS Search BeTs to clades of COG0277 COG name: FAD/FMN-containing dehydrogenases Functional Class:� C The phylogenetic pattern of COG0277 is ao-p-zyq-dr-bcefghsnuj---- Number of proteins in this genome belonging to this COG isBlocks Summary: Blocks SearchProDom Summary: Protein Domain Search Residues 74 to 267 match (6e-29) PD:PD001687 which is described as PROTEOME COMPLETE OXIDOREDUCTASE OXIDASE SUBUNIT D-LACTATE GLYCOLATE FLAVOPROTEIN DEHYDROGENASE FAD Residues 126 to 269 match (2e-18) PD:PD017080 which is described as REDUCTASE COMPLETE PROTEOME CELL UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE OXIDOREDUCTASE DEHYDROGENASE FAD DIVISION FLAVOPROTEIN Residues 278 to 431 match (5e-16) PD:PD288844 which is described as COMPLETE PROTEOME OXIDASE OXIDOREDUCTASE GLYCOLATE SUBUNIT D-LACTATE SYNTHASE DEHYDROGENASE FAD Residues 515 to 556 match (9e-07) PD:PD518404 which is described as SYNTHASE FLAVOPROTEIN FAD ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHESIS LIPID ALKYL-DHAP PEROXISOME TRANSFERASE ALKYLGLYCERONE-PHOSPHATEParalogs: Local Blast Search TDE0138 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.Pfam Summary: Pfam Search Residues 125 to 293 (E-value = 2.3e-38) place TDE0138 in the FAD_binding_4 family which is described as FAD binding domain (PF01565) Residues 308 to 562 (E-value = 1.4e-31) place TDE0138 in the FAD-oxidase_C family which is described as FAD linked oxidases, C-terminal domain (PF02913)Top PDB Hits: PDB hits to TDE0138 from Psi-BLAST round 5 vs. nr database 14.7% similar to PDB:1DII Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A Resolution (Chain A,B; 2e-55) 14.7% similar to PDB:1DIQ Crystal Structure Of P-Cresol Methylhydroxylase With Substrate Bound (Chain A,B; 2e-55) 15.7% similar to PDB:2VAO Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase In Complex With (Chain A,B; 2e-42) 15.7% similar to PDB:1VAO Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase (Chain A,B; 2e-42) 15.7% similar to PDB:1AHU Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase In Complex With (Chain A,B; 2e-42) 15.4% similar to PDB:1DZN Asp170ser Mutant Of Vanillyl-Alcohol Oxidase (Chain A,B; 2e-42) 15.2% similar to PDB:1E0Y Structure Of The D170sT457E DOUBLE MUTANT OF Vanillyl-Alcohol Oxidase (Chain A,B; 2e-42) 15.2% similar to PDB:1QLT Structure Of The H422a Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase (Chain A,B; 3e-42) 15.2% similar to PDB:1QLU Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In Complex With Isoeugeno (Chain A,B; 3e-42) 15.2% similar to PDB:1E8F Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase In The (Chain A,B; 4e-42)Gene Protein Sequence: MGKRYEYKDFKPVWEQVPPPKGSFREAAKWGDPNEFKEPNERLYKYMKTV FGIGDETFKQKRFEGLEALPENLPVNLDQKHIEVLKEIFGEADVSTAVKD RVSVAYGKTMYDAYRLREGILENIADVVVYPSSHDQIVKLVKYANEHKIP LYVYGGGSSVTRGVEAVRGGISLDMRKNFNKVLTFNETDQTITVQAGMSG PQLEAHLNNAQKEFNAKMAYTCGHFPQSFEYSSVGGWVVTRGAGQNSTYY GNIKDIVFQQTYITPAGIVKSYGLPAHAVGPDIDELMMGSEGSFGILTNV TLRFFKYRPETRKKFSFIFKTWEDGMKACREIMQNESGFPSVFRLSDAEE TDMALKLYGVEGTIAETAMNLMGYKPMKRCLFLGWSEGAKEFSKQLYKKV KRICKQNGGLFLTGKPVDGWEHGRFTDPYLRESLQDYGVIIDTMECSVTW DMMPKVHEEVRRFAKSRPHTVCMTHLSHAYPQGANLYFIFIGLFKNKEEY VEYQYGIFDNIMKAGAAMSHHHGVGKMTAAWVEESIGQTNFEIFKALKKH FDPNNIMNPGGTLGLDMTEDQKRKPKYAGKTWEENFGene Nucleotide Sequence: Sequence Viewer ATGGGAAAAAGATATGAGTACAAGGATTTTAAACCGGTTTGGGAACAGGT ACCGCCTCCAAAGGGCTCTTTTAGAGAAGCGGCAAAGTGGGGAGACCCAA ACGAATTTAAGGAGCCTAACGAAAGACTTTATAAATATATGAAAACGGTC TTCGGCATAGGAGATGAGACATTTAAACAAAAGAGGTTTGAAGGACTTGA AGCCTTGCCTGAAAACCTTCCCGTAAACCTTGACCAAAAACACATTGAGG TCTTAAAAGAAATTTTCGGAGAGGCGGATGTCAGCACAGCCGTTAAGGAC AGGGTATCGGTCGCTTACGGAAAAACCATGTATGATGCCTACCGCCTCCG TGAGGGCATCTTAGAAAACATCGCCGATGTTGTAGTATACCCTTCAAGCC ATGACCAAATAGTTAAGCTCGTAAAATATGCGAATGAGCACAAAATTCCC CTCTATGTGTACGGAGGCGGTTCTTCCGTTACCAGAGGCGTTGAGGCAGT AAGGGGCGGCATATCCCTCGATATGCGTAAAAACTTTAACAAAGTTTTAA CCTTTAACGAAACTGACCAGACAATTACGGTTCAAGCCGGAATGTCGGGG CCCCAACTGGAAGCTCACTTAAACAATGCTCAAAAAGAATTCAATGCAAA GATGGCCTACACTTGCGGACACTTCCCGCAATCCTTTGAATACTCCTCCG TGGGAGGCTGGGTAGTTACCCGAGGAGCAGGGCAAAATTCCACATACTAC GGAAACATAAAGGACATAGTTTTTCAACAAACATACATAACTCCTGCGGG CATCGTTAAAAGCTACGGGCTTCCCGCTCATGCGGTCGGACCGGACATCG ACGAGCTTATGATGGGGAGCGAGGGCTCTTTTGGAATTCTTACAAATGTT ACCTTGCGGTTTTTTAAATACAGGCCGGAAACCCGCAAAAAGTTCAGCTT TATATTTAAAACTTGGGAAGACGGAATGAAGGCTTGCCGAGAGATTATGC AAAACGAATCGGGCTTCCCCTCGGTGTTTAGACTTTCGGATGCGGAAGAA ACCGACATGGCTTTAAAGCTCTACGGAGTTGAAGGCACAATAGCCGAAAC AGCGATGAACCTCATGGGATATAAACCGATGAAACGCTGCCTCTTTTTAG GCTGGAGCGAAGGAGCTAAAGAATTTTCAAAGCAGCTTTACAAAAAGGTA AAACGGATATGTAAACAAAACGGCGGACTTTTTTTAACGGGCAAGCCTGT AGACGGCTGGGAGCACGGCCGCTTTACGGATCCGTATCTAAGAGAATCCT TACAAGATTACGGAGTAATAATAGACACAATGGAATGCAGCGTAACATGG GATATGATGCCGAAAGTTCATGAAGAGGTAAGAAGATTTGCAAAATCCCG CCCTCACACGGTCTGCATGACTCATCTTTCCCATGCCTATCCGCAAGGGG CAAACCTGTACTTCATCTTTATAGGCCTTTTTAAAAACAAGGAAGAATAT GTGGAATACCAGTACGGCATCTTCGATAACATAATGAAGGCAGGAGCGGC CATGAGCCACCACCACGGTGTCGGCAAGATGACGGCAGCTTGGGTAGAAG AATCCATAGGACAAACCAATTTTGAAATCTTTAAGGCTCTAAAAAAACAC TTCGACCCGAACAATATAATGAATCCGGGCGGTACCCTTGGCCTCGATAT GACGGAAGACCAAAAGAGAAAACCTAAATACGCCGGAAAAACTTGGGAGG AAAATTTT

Los Alamos National Laboratory • Est 1943