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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs934306          
refSNP ID: rs934306
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:G/T
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_001004722.1:c.-16-11850C>A
NM_003581.2:c.-16-11850C>A
NT_022171.14:g.8529239C>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss19467561 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs934306 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1373555TSC-CSHL|TSC0350903fwd/BG/Tcgggctatatatatatgaaacataaataagtatatatgaaacataaatttagcatttaga09/06/0010/10/0386Genomic95 %
ss19467561CSHL-HAPMAP|CSHL-HuDD-200402.chr2.NT_022171.13_8525678rev/TA/Ctctaaatgctaaatttatgtttcatatatacttatttatgtttcatatatatatagcccg02/20/0403/04/04120Genomicunknown
ss41735299ABI|hCV2063692rev/TA/Ctctaaatgctaaatttatgtttcatatatacttatttatgtttcatatatatatagcccg07/17/0507/17/05126Genomicunknown
ss78883956HGSV|Cor18507_SNV_20070510.chr2_105918172rev/TA/Ctctaaatgctaaatttatgtttcatatatacttatttatgtttcatatatatatagcccg10/19/0710/21/07129Genomicunknown
ss82849416HGSV|Cor18956_SNV_20070510.chr2_105918172rev/TA/Ctctaaatgctaaatttatgtttcatatatacttatttatgtttcatatatatatagcccg11/30/0712/03/07130Genomicunknown
ss85263413HGSV|Cor18517_SNV_20070510.chr2_105918172rev/TA/Ctctaaatgctaaatttatgtttcatatatacttatttatgtttcatatatatatagcccg12/06/0712/08/07130Genomicunknown
ss91282276BCMHGSC_JDW|JWB-1283176rev/TA/Ctctaaatgctaaatttatgtttcatatatacttatttatgtttcatatatatatagcccg02/26/0803/01/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs934306|allelePos=501|totalLen=848|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=130
 CTACCatcca atattgcttt ttcttgaatt gttccagctt tgtgtatggg agcgttttca
 gctggctact gtgtccctgt gacgtatcac catcactgcg agtgttcgtt cgtttgtttc
 tttgagcaca tccttacttt ctggcaccac aagatgctct gggcttttct tgcatatttt
 ctaccccagt cccagaatca gTATATCTGC CTTGATTGTA ACCAGCAGTA CCTGTAGTCC
 ACTTTTTACA CATGAATCCT TTACAAAATA AAGAGGGGAG GGCTAGGTTT TTTTTTTTTT
 TTTCTTATGG GACCACAGTA CAGAAATAca ggctaagaat ccctaattca aaactccaaa
 atccaaaatg ctccgaatcc aaaacttgag cactacaagt gaaaaattcc acatccaacc
 tcatgtgatg ggtcacacat attattaaaa atattatatg aaattacctt cgggctatat
 atatatgaaa cataaataag
 K
 tatatatgaa acataaattt agcatttaga cttgagtccc attcccaaga tatctcattt
 atgtatatgt agatattcca aaacctcaaa aaattctgaa tgccctaaca ctctgatccc
 aagcacttag gataaggtat acttaacTAG AACTTAAGAT TTCTCCTATG CAGACTCTAG
 CCCACTCCTG GGCCACATGC TGTTGAAGAA AATAATAAAA CTGTGCTGTG AAGCCTGATG
 GTATTTTATC TCCACTAGAC TGTCCCTCCT GCTAAGCAAT GGCAAGCAGT AAGAACCCCC
 CCACCCCACC ACCCACTGGT TGCCTATCAT ATTTCTCACA GCGTCCA

  GeneView back to top
GeneView via analysis of contig annotation: NCK2 NCK adaptor protein 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label
Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_022171->NM_001004722
svfunction
referenceNT_022171->NM_003581
svfunction
CeleraNW_928052->NM_001004722
svfunction
CeleraNW_928052->NM_003581
svfunction
"
Group
label
Contig-->mRNA-->ProteinContig
position
mRNA
orientation
mRNA
pos
FunctiondbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
referenceNT_022171->NM_001004722->NP_0010047228529239forwardintron
referenceNT_022171->NM_003581->NP_0035728529239forwardintron
CeleraNW_928052->NM_001004722->NP_0010047228214429forwardintron
CeleraNW_928052->NM_003581->NP_0035728214429forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs934306 maps exactly once on NCBI human chromosome 2
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
2NW_001838818.2553396100228885plusGalt_assembly_8HuRefHuRefview500
2NW_928052.18214429100660100minusCalt_assembly_1CeleraCeleraview500
2NT_022171.148529239105826086minusCref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022171
dbSNP Blast Analysis
GenBank HTGS Finished:
AC010978.8 NC_000002.10

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .