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 EC-number:  3.1.22.4 ----- crossover junction endodeoxyribonuclease
EC-NUMBER 3.1.22.4
ENZYME-NAME crossover junction endodeoxyribonuclease
ENZYME-SYSNAME The enzyme from Saccharomyces cerevisiae has no endonuclease or exonuclease activity on single-stranded or double-stranded DNA molecules that do not contain Holliday junctions.
ENZYME-CLASS Hydrolases Acting on ester bonds Endodeoxyribonucleases producing 3''-phosphomonoesters
SYNONYMS Hje endonuclease;; Holliday junction endonuclease CCE1;; Holliday junction resolvase;; Holliday junction-cleaving endonuclease;;   >>more synonyms
REACTION Endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction)
PATHWAY EMP-PATHWAYS: dsDNA(,1),_dsDNA(,2)--Crossed_over_dsDNA(,1),_Crossed_over_dsDNA(,2)_anabolism;   >>more EMP pathways
KEGG-PATHWAYS: NO KEGG PATHWAY FOUND
GO_TERM GO:0008821:crossover junction endodeoxyribonuclease activity
ENZYME-COMMENT NULL
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ExternalDB ----- DBLINKS
Diseases
Structure
Gene
Motif
Ortholog
Literature
Other
InterPro Domains found in sequences annotated as EC 3.1.22.4
   IPR001360 Glycoside hydrolase, family 1
   IPR002176 Crossover junction endodeoxyribonuclease RuvC
   IPR002197 Helix-turn-helix, Fis-type
   IPR005829 Sugar transporter superfamily
   IPR006166 ERCC4
   IPR008822 Endodeoxyribonuclease RusA
   IPR010996 DNA polymerase beta, N-terminal-like
   IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
       
PIR SuperFamilies containing EC 3.1.22.4
SF001007 phage 82 crossover junction endodeoxyribonuclease rusA
SF006082 DNA repair protein ruvC
Taxonomic breakdown of EC 3.1.22.4 sequences
To perform phylogenetic analysis, first select some protein ids by clicking on their checkboxes, then click on one of the buttons below.
  Additional gi numbers:   
Bacteriophage 82
1051116
IPR008822 Endodeoxyribonuclease RusA
Bacteria
Actinobacteria
Actinobacteria (class)
Bifidobacterium longum
23465305
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Corynebacterium glutamicum
13346822
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Corynebacterium jeikeium
68263732
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Leifsonia xyli
50954746
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Mycobacterium bovis
31619372
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Mycobacterium leprae
13092706
IPR001360 Glycoside hydrolase, family 1
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Mycobacterium tuberculosis
31619372
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Propionibacterium acnes
50842638
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Streptomyces avermitilis
29833375
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Streptomyces coelicolor
21220020
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Tropheryma whipplei
28493234
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Bacteroidetes
Bacteroidetes (class)
Bacteroides fragilis
60494004
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Porphyromonas gingivalis
34541016
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chlamydiae
Chlamydiae (class)
Chlamydia muridarum
13431872
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chlamydia trachomatis
15605231
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
76789239
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chlamydophila abortus
62147830
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chlamydophila caviae
29834234
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chlamydophila pneumoniae
16752419
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chlorobi
Chlorobia
Chlorobaculum tepidum
21674482
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chloroflexi
Dehalococcoidetes
Dehalococcoides ethenogenes
57234747
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Dehalococcoides sp. CBDB1
73660001
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Cyanobacteria
Nostoc sp. PCC 7120
17131389
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Prochlorococcus marinus
33240597
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
33640856
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
33861610
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Synechococcus sp. WH 8102
33632418
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Synechocystis sp. PCC 6803
16332062
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Gloeobacteria
Gloeobacter violaceus
35213871
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Deinococcus-Thermus
Deinococci
Deinococcus radiodurans
15805467
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Thermus thermophilus
46199033
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Firmicutes
Clostridia
Carboxydothermus hydrogenoformans
78043886
Thermoanaerobacter tengcongensis
20807634
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Fusobacteria
Fusobacteria (class)
Fusobacterium nucleatum
19713657
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Planctomycetes
Planctomycetacia
Rhodopirellula baltica
32397925
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR005829 Sugar transporter superfamily
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Proteobacteria
Alphaproteobacteria
Agrobacterium tumefaciens
17937429
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Anaplasma marginale
56417274
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Bradyrhizobium japonicum
27376646
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Brucella melitensis
23348563
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
62290576
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Candidatus Pelagibacter ubique
71062411
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Caulobacter vibrioides
13424922
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Ehrlichia canis
73666641
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Ehrlichia ruminantium
57238746
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Gluconobacter oxydans
58040112
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Mesorhizobium loti
13473342
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Rickettsia conorii
15892082
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Rickettsia felis
67005098
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Rickettsia prowazekii
3860687
Rickettsia typhi
51473230
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Silicibacter pomeroyi
56679685
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Sinorhizobium meliloti
15075775
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Betaproteobacteria
Azoarcus sp. EbN1
56477501
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Bordetella bronchiseptica
33602976
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Bordetella parapertussis
33566641
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Bordetella pertussis
33594300
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Burkholderia mallei
67637902
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Burkholderia pseudomallei
67637902
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
76811143
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Chromobacterium violaceum
34499680
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Neisseria gonorrhoeae
59800611
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Neisseria meningitidis
7380273
15677278
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Nitrosomonas europaea
30248235
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Ralstonia solanacearum
17427513
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR002197 Helix-turn-helix, Fis-type
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Deltaproteobacteria
Desulfovibrio vulgaris
46580663
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Geobacter sulfurreducens
39982942
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Epsilonproteobacteria
Campylobacter jejuni
6969145
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
57236914
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Helicobacter hepaticus
32262661
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Helicobacter pylori
15611878
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
15645496
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Wolinella succinogenes
34481796
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Gammaproteobacteria
Acinetobacter sp. ADP1
50085173
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Colwellia psychrerythraea
71277765
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR002197 Helix-turn-helix, Fis-type
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Coxiella burnetii
29654858
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Escherichia coli
42175
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
1051141
IPR008822 Endodeoxyribonuclease RusA
Francisella tularensis
56707778
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Haemophilus ducreyi
33151782
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Haemophilus influenzae
16272268
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
68057120
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Legionella pneumophila
52841518
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Methylococcus capsulatus
53804472
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pasteurella multocida
12721304
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pectobacterium atrosepticum
49611944
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Photorhabdus luminescens
37526026
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pseudoalteromonas haloplanktis
77360815
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR002197 Helix-turn-helix, Fis-type
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pseudomonas aeruginosa
1183840
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pseudomonas fluorescens
70732090
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pseudomonas putida
24982662
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pseudomonas savastanoi
71738104
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Pseudomonas syringae group genomosp. 3
28871124
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Psychrobacter arcticus
71065265
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Salmonella typhimurium
29141460
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR002197 Helix-turn-helix, Fis-type
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Shewanella oneidensis
24373978
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Shigella flexneri
56383528
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR002197 Helix-turn-helix, Fis-type
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Vibrio cholerae
75828633
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Vibrio fischeri
59711557
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Vibrio parahaemolyticus
28897822
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Vibrio vulnificus
27365487
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
37680471
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Wigglesworthia glossinidia
25166069
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Xanthomonas axonopodis
21243876
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Xanthomonas campestris
66767460
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
78048837
Xylella fastidiosa
28198788
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Yersinia pestis
45436563
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Yersinia pseudotuberculosis
45436563
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Spirochaetes
Spirochaetes (class)
Treponema denticola
42527370
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Treponema pallidum
15639508
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Thermotogae
Thermotogae (class)
Thermotoga maritima
4981092
IPR002176 Crossover junction endodeoxyribonuclease RuvC
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold
Eukaryota
Ascomycota
Schizosaccharomycetes
Schizosaccharomyces pombe
2213548
IPR006166 ERCC4
IPR010996 DNA polymerase beta, N-terminal-like
13624761
Chordata
Mammalia
Homo sapiens
34147594
IPR006166 ERCC4
IPR010996 DNA polymerase beta, N-terminal-like
Mus musculus
16755674
IPR006166 ERCC4
IPR010996 DNA polymerase beta, N-terminal-like
  Additional gi numbers:   

To perform phylogenetic analysis:

  1. Select some ids by clicking on their checkboxes.
  2. Click on one of the buttons above.