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Library:8704 (dbEST ID)
NICHD_XGC_He1
Library Description
| Organism: | Xenopus laevis |
| Organ: | heart |
| Vector: | pCMV-SPORT6 |
| Vector type: | phagemid (ampicillin resistant) |
| Cloning site 1: | NotI |
| Cloning site 2: | SalI |
| Lab host: | DH10B (phage-resistant) |
Cloned unidirectionally. Primer: Oligo dT. Average insert size 1.6 kb. Constructed by Life Technologies.
Source: Sandy Clifton, Ph.D., Washington University School of Medicine
Gene Content Analysis
4,119 ESTs from this library were grouped into 1,173 UniGene entries (putative genes) [UniGene build #86, 01-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 1 | 243 |  |
Xl.84940 | Transcribed locus, weakly similar to XP_001919215.1 PREDICTED: similar to gag-pro-pol polyprotein, partial [Danio rerio]. |
| 1 | 243 | |
Xl.84828 | Transcribed locus, moderately similar to NP_001016562.1 tumor differentially expressed 2-like [Xenopus (Silurana) tropicalis]. |
| 1 | 243 | |
Xl.84730 | MGC81028 protein (MGC81028), mRNA. |
| 1 | 243 | |
Xl.84709 | Hypothetical protein MGC83192 (MGC83192), mRNA. |
| 1 | 243 | |
Xl.84413 | Transcribed locus, moderately similar to NP_001029247.1 tropomyosin 1, alpha isoform i [Rattus norvegicus]. |
| 1 | 243 | |
Xl.84236 | CDNA clone IMAGE:5514561. |
| 1 | 243 | |
Xl.84235 | Transcribed locus, strongly similar to NP_035794.1 ubiquitin B [Mus musculus]. |
| 1 | 243 | |
Xl.84234 | Ribosomal protein L13. |
| 1 | 243 | |
Xl.84226 | Hypothetical protein LOC100049086 (LOC100049086), mRNA. |
| 1 | 243 | |
Xl.83973 | Transcribed locus, strongly similar to NP_001001593.1 ribosomal protein L23a [Danio rerio]. |
| 1 | 243 | |
Xl.83953 | Transcribed locus, strongly similar to NP_775369.1 ribosomal protein L36A [Danio rerio]. |
| 1 | 243 | |
Xl.83894 | Transcribed locus, strongly similar to NP_001079441.1 hypothetical protein LOC379128 [Xenopus laevis]. |
| 1 | 243 | |
Xl.83546 | Transcribed locus, strongly similar to NP_991239.1 hypothetical protein LOC402975 [Danio rerio]. |
| 1 | 243 | |
Xl.83539 | Transcribed locus, strongly similar to NP_001080195.1 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 [Xenopus laevis]. |
| 1 | 243 | |
Xl.83509 | Transcribed locus, strongly similar to NP_001085928.1 MGC82833 protein [Xenopus laevis]. |
| 1 | 243 | |
Xl.83283 | Transcribed locus, strongly similar to NP_001089106.1 67kD laminin receptor precursor [Xenopus laevis]. |
| 1 | 243 | |
Xl.83264 | Transcribed locus, weakly similar to XP_001923080.1 PREDICTED: hypothetical protein LOC322341 [Danio rerio]. |
| 1 | 243 | |
Xl.83260 | Transcribed locus, strongly similar to NP_001082161.1 hairy2b [Xenopus laevis]. |
| 1 | 243 | |
Xl.83259 | Transcribed locus, strongly similar to NP_001088041.1 hypothetical protein LOC494734 [Xenopus laevis]. |
| 1 | 243 | |
Xl.83253 | Hypothetical protein MGC84921 (MGC84921), mRNA. |
| 1 | 243 | |
Xl.83155 | Hypothetical protein LOC432342 (LOC432342), mRNA. |
| 1 | 243 | |
Xl.83149 | Copine III (MGC68823), mRNA. |
| 1 | 243 | |
Xl.8247 | Transcribed locus. |
| 1 | 243 | |
Xl.8225 | Ribosomal protein S12 (MGC68529), mRNA. |
| 1 | 243 | |
Xl.8188 | PINCH-1 (Pinch-1). |
| 1 | 243 | |
Xl.8181 | Protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform (ppm1g), mRNA. |
| 1 | 243 | |
Xl.8151 | Cold-inducible RNA binding protein 2 (xcirp2), mRNA. |
| 1 | 243 | |
Xl.8060 | Hypothetical protein MGC64283 (MGC64283), mRNA. |
| 1 | 243 | |
Xl.80473 | Transcribed locus, strongly similar to NP_001079437.1 similar to ribosomal protein L5 [Xenopus laevis]. |
| 1 | 243 | |
Xl.80444 | Transcribed locus, weakly similar to NP_008143.1 NADH dehydrogenase subunit 4 [Xenopus laevis]. |
| 1 | 243 | |
Xl.80443 | Transcribed locus. |
| 1 | 243 | |
Xl.80442 | Transcribed locus. |
| 1 | 243 | |
Xl.80180 | MGC82698 protein (MGC82698), mRNA. |
| 1 | 243 | |
Xl.7983 | DUF140, mRNA (cDNA clone MGC:196683 IMAGE:9041591). |
| 1 | 243 | |
Xl.79634 | Transcribed locus, strongly similar to NP_001084962.1 hypothetical protein LOC432021 [Xenopus laevis]. |
| 1 | 243 | |
Xl.79486 | Transcribed locus, strongly similar to NP_001089829.1 hypothetical protein LOC734895 [Xenopus laevis]. |
| 1 | 243 | |
Xl.79350 | CDNA clone IMAGE:7976918. |
| 1 | 243 | |
Xl.7825 | Zinc finger protein XFDL 156 (LOC397849), mRNA. |
| 1 | 243 | |
Xl.7796 | Transcribed locus. |
| 1 | 243 | |
Xl.77931 | Transcribed locus. |
| 1 | 243 | |
Xl.77590 | Hydroxyacyl-Coenzyme A dehydrogenase, type II (hadh2), mRNA. |
| 1 | 243 | |
Xl.77567 | Transcribed locus. |
| 1 | 243 | |
Xl.7749 | Transcribed locus. |
| 1 | 243 | |
Xl.77308 | Transcribed locus. |
| 1 | 243 | |
Xl.77158 | Transcribed locus, moderately similar to NP_942147.3 pleckstrin homology-like domain, family B, member 3 [Homo sapiens]. |
| 1 | 243 | |
Xl.77123 | Transcribed locus, strongly similar to NP_001086481.1 MGC83421 protein [Xenopus laevis]. |
| 1 | 243 | |
Xl.76985 | Transcribed locus, strongly similar to NP_062686.1 ring-box 1 [Mus musculus]. |
| 1 | 243 | |
Xl.76984 | Transcribed locus. |
| 1 | 243 | |
Xl.76983 | Transcribed locus, strongly similar to NP_001079766.1 elongation factor 1 gamma [Xenopus laevis]. |
| 1 | 243 | |
Xl.76982 | Beta-arrestin 2. |
| 1 | 243 | |
Xl.76975 | Transcribed locus, strongly similar to NP_001088466.1 hypothetical protein LOC495331 [Xenopus laevis]. |
| 1 | 243 | |
Xl.76974 | Hypothetical LOC494729 (LOC494729), mRNA. |
| 1 | 243 | |
Xl.76972 | Hypothetical protein MGC68699 (MGC68699), mRNA. |
| 1 | 243 | |
Xl.76892 | MGC86473 protein (MGC86473), mRNA. |
| 1 | 243 | |
Xl.76867 | Transcribed locus, strongly similar to NP_001085252.1 hypothetical protein LOC432350 [Xenopus laevis]. |
| 1 | 243 | |
Xl.76856 | Transcribed locus. |
| 1 | 243 | |
Xl.7684 | Nuclear matrix protein NMP200 related to splicing factor PRP19 (nmp200), mRNA. |
| 1 | 243 | |
Xl.76782 | Transcribed locus, weakly similar to NP_008143.1 NADH dehydrogenase subunit 4 [Xenopus laevis]. |
| 1 | 243 | |
Xl.76781 | Transcribed locus. |
| 1 | 243 | |
Xl.76777 | Transcribed locus, strongly similar to NP_001027459.1 ubiquitin-conjugating enzyme E2 variant 1 isoform d [Homo sapiens]. |
| 1 | 243 | |
Xl.76710 | Hypothetical protein MGC78841 (MGC78841), mRNA. |
| 1 | 243 | |
Xl.76702 | Transcribed locus, strongly similar to NP_035794.1 ubiquitin B [Mus musculus]. |
| 1 | 243 | |
Xl.7670 | Dishevelled homolog (Xdsh), mRNA. |
| 1 | 243 | |
Xl.76674 | Hypothetical protein MGC80282 (MGC80282), mRNA. |
| 1 | 243 | |
Xl.76661 | Transcribed locus, strongly similar to NP_001098278.1 cytoplasmic actin OlCA1 [Oryzias latipes]. |
| 1 | 243 | |
Xl.76660 | Transcribed locus, moderately similar to NP_001080228.1 ATPase, Na+/K+ transporting, beta 1a polypeptide [Xenopus laevis]. |
| 1 | 243 | |
Xl.76606 | Transcribed locus. |
| 1 | 243 | |
Xl.76598 | MGC81121 protein (MGC81121), mRNA. |
| 1 | 243 | |
Xl.76597 | Transcribed locus, weakly similar to NP_062273.1 rabaptin, RAB GTPase binding effector protein 1 [Mus musculus]. |
| 1 | 243 | |
Xl.76594 | Transcribed locus, strongly similar to NP_001090004.1 hypothetical protein LOC735075 [Xenopus laevis]. |
| 1 | 243 | |
Xl.76580 | Hypothetical protein LOC100174799 (LOC100174799), mRNA. |
| 1 | 243 | |
Xl.76579 | Chaperonin containing TCP1, subunit 5 (epsilon) (cct5), mRNA. |
| 1 | 243 | |
Xl.76578 | MGC85348 protein (MGC85348), mRNA. |
| 1 | 243 | |
Xl.76577 | Transcribed locus. |
| 1 | 243 | |
Xl.76574 | Hypothetical protein MGC130864 (MGC130864), mRNA. |
| 1 | 243 | |
Xl.76532 | Transcribed locus, strongly similar to NP_001085474.1 MGC80162 protein [Xenopus laevis]. |
| 1 | 243 | |
Xl.76530 | Transcribed locus, strongly similar to NP_031615.1 calmodulin 2 [Mus musculus]. |
| 1 | 243 | |
Xl.76528 | MGC81355 protein (MGC81355), mRNA. |
| 1 | 243 | |
Xl.76527 | Voltage-dependent anion channel 1 (vdac1), mRNA. |
| 1 | 243 | |
Xl.76525 | Transcribed locus, moderately similar to NP_003785.1 sorting nexin 4 [Homo sapiens]. |
| 1 | 243 | |
Xl.76524 | Hypothetical protein LOC432116, mRNA (cDNA clone IMAGE:5078910). |
| 1 | 243 | |
Xl.76523 | Transcribed locus. |
| 1 | 243 | |
Xl.76506 | Transcribed locus, strongly similar to NP_001079779.1 hypothetical protein LOC379469 [Xenopus laevis]. |
| 1 | 243 | |
Xl.76505 | Transcribed locus, strongly similar to NP_059070.1 protein phosphatase 2a, catalytic subunit, beta isoform [Mus musculus]. |
| 1 | 243 | |
Xl.76502 | Transcribed locus. |
| 1 | 243 | |
Xl.76501 | Hypothetical LOC494763 (LOC494763), mRNA. |
| 1 | 243 | |
Xl.76499 | BTB domain protein 2 (btbd1), mRNA. |
| 1 | 243 | |
Xl.76495 | Transcribed locus, strongly similar to NP_942599.1 RAB6A, member RAS oncogene family isoform b [Homo sapiens]. |
| 1 | 243 | |
Xl.76445 | Hypothetical protein LOC100037037 (LOC100037037), mRNA. |
| 1 | 243 | |
Xl.76432 | Transcribed locus. |
| 1 | 243 | |
Xl.76398 | Hypothetical protein MGC64475 (MGC64475), mRNA. |
| 1 | 243 | |
Xl.76382 | Transcribed locus, moderately similar to XP_415913.1 PREDICTED: similar to kinase A anchor protein [Gallus gallus]. |
| 1 | 243 | |
Xl.76381 | Hypothetical protein MGC64442 (MGC64442), mRNA. |
| 1 | 243 | |
Xl.76380 | Transcribed locus. |
| 1 | 243 | |
Xl.76376 | Hypothetical protein LOC100037116 (LOC100037116), mRNA. |
| 1 | 243 | |
Xl.76358 | Transcribed locus, strongly similar to XP_001919666.1 PREDICTED: similar to alpha 2 actin [Danio rerio]. |
| 1 | 243 | |
Xl.76299 | Splicing factor, arginine/serine-rich 2 (sfrs2), mRNA. |
| 1 | 243 | |
Xl.76281 | Transcribed locus. |
| 1 | 243 | |
Xl.76276 | Transcribed locus, strongly similar to NP_006004.1 ribosomal protein L10 [Homo sapiens]. |
| 1 | 243 | |
Xl.76275 | Transcribed locus. |
Source: NCBI UniGene
EST Sequences
4,496 EST sequences from this library have been submitted to the public sequence database as of 01-Dec-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- heart
- adult
- non-normalized
Source: NCBI Clone Registry