Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
---|---|---|---|---|---|---|---|---|---|---|
204334 | hypothetical | YPO3612 | putative transcriptional regulatory protein Similar to Vibrio cholerae cryptic phage Ctxphi transcriptional repressor RstR (RstR1 or VC1455) and (RstR2 or VC1464) TR:O34419 (EMBL:U83796) (112 aa) fasta scores: E(): 6.8e-08, 33.6% id in 107 aa, and to Bacillus subtilis putative PbsX repressor Xre SW:XRE_BACSU (P23789) (113 aa) fasta scores: E(): 3.1e-05, 30.2% id in 106 aa | genbank | 16123754 | NP_407067.1 | 135 | 4025613 | 4026020 | |
204335 | hypothetical | YPO3613 | putative Rhs accessory genetic element Similar to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0, 46.7% id in 599 aa, and to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 51.2% id in 531 aa. Similar to YPO3606 (78.0% identity in 803 aa overlap) and to YPO0764 (76.2% identity in 621 aa overlap) | genbank | 16123755 | NP_407068.1 | 732 | 4026381 | 4028579 | |
204336 | hypothetical | YPO3614 | hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 7e-07, 26.5% id in 136 aa | genbank | 16123756 | NP_407069.1 | 140 | 4028582 | 4029004 | |
204337 | hypothetical | YPO3615 | hypothetical protein Similar to Escherichia coli RhsC protein precursor SW:RHSC_ECOLI (P16918) (1397 aa) fasta scores: E(): 6.5e-20, 27.2% id in 1018 aa, and to Streptomyces coelicolor putative Rhs protein scd31.24 TR:Q9L0E3 (EMBL:AL161803) (927 aa) fasta scores: E(): 5.2e-31, 31.9% id in 889 aa | genbank | 16123757 | NP_407070.1 | 1512 | 4029049 | 4033587 | |
204338 | hypothetical | YPO3616 | hypothetical protein Similar to Ureaplasma parvum hypothetical protein UU139 TR:Q9PR05 (EMBL:AE002114) (236 aa) fasta scores: E(): 1.1, 21.9% id in 192 aa | genbank | 16123758 | NP_407071.1 | 264 | 4033596 | 4034390 | |
204339 | hypothetical | YPO3617 | hypothetical protein no significant database hits | genbank | 16123759 | NP_407072.1 | 299 | 4034737 | 4035636 | |
204340 | hypothetical | YPO3618 | putative oxidoreductase Similar to Thermotoga maritima conserved hypothetical protein Tm0312 TR:Q9WYE8 (EMBL:AE001713) (328 aa) fasta scores: E(): 2.7e-11, 24.2% id in 240 aa, and to Bacillus subtilis hypothetical 37.8 kDa protein in csbX-nadA intergenic region YrbE SW:YRBE_BACSU (O05389) (341 aa) fasta scores: E(): 2.8e-11, 25.9% id in 332 aa | genbank | 16123760 | NP_407073.1 | 376 | 4035633 | 4036763 | |
204341 | hypothetical | YPO3619 | putative araC-family transcriptional regulatory protein Similar to Pediococcus pentosaceus raffinose operon transcriptional regulatory protein RafR SW:RAFR_PEDPE (P43465) (277 aa) fasta scores: E(): 1.3e-12, 25.6% id in 270 aa | genbank | 16123761 | NP_407074.1 | 313 | 4036958 | 4037899 | |
204342 | hypothetical | YPO3620 | putative carbohydrate transport protein Similar to Haemophilus influenzae high affinity ribose transport protein RbsD or Hi0501 SW:RBSD_HAEIN (P44734) (139 aa) fasta scores: E(): 1.3e-12, 34.0% id in 141 aa, and to Escherichia coli high affinity ribose transport protein RbsD SW:RBSD_ECOLI (P04982) (151 aa) fasta scores: E(): 9.9e-12, 32.4% id in 136 aa | genbank | 16123762 | NP_407075.1 | 167 | 4038061 | 4038564 | |
204343 | hypothetical | YPO3621 | probable carbohydrate kinase Similar to Escherichia coli ribokinase RbsK SW:RBSK_ECOLI (P05054) (309 aa) fasta scores: E(): 1.6e-32, 35.9% id in 301 aa, and to Pseudomonas aeruginosa ribokinase Rbsk or Pa1950 TR:AAG05338 (EMBL:AE004621) (308 aa) fasta scores: E(): 0, 39.3% id in 298 aa | genbank | 16123763 | NP_407076.1 | 310 | 4038570 | 4039502 | |
204344 | hypothetical | YPO3622 | putative deoxyribose-phosphate aldolase Similar to Bacillus subtilis deoxyribose-phosphate aldolase DeoC or Dra SW:DEOC_BACSU (P39121) (211 aa) fasta scores: E(): 1.9e-14, 32.2% id in 202 aa, and to Methanobacterium thermoautotrophicum probable deoxyribose-phosphate aldolase DeoC or Mth818 SW:DEOC_METTH (O26909) (224 aa) fasta scores: E(): 3.9e-18, 33.0% id in 227 aa | genbank | 16123764 | NP_407077.1 | 233 | 4039656 | 4040357 | |
204345 | ssuE | hypothetical | YPO3623 | putative NAD(P)H-dependent FMN reductase Similar to Escherichia coli NAD(P)H-dependent FMN reductase SsuE SW:SSUE_ECOLI (P80644) (191 aa) fasta scores: E(): 0, 61.1% id in 175 aa, and to Pseudomonas putida NADH-dependent FMN reductase SsuE SW:SSUE_PSEPU (O85762) (200 aa) fasta scores: E(): 0, 55.9% id in 195 aa | genbank | 16123765 | NP_407078.1 | 193 | 4040828 | 4041409 |
204346 | ssuA | hypothetical | YPO3624 | putative aliphatic sulfonates binding protein Similar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 0, 73.1% id in 316 aa | genbank | 16123766 | NP_407079.1 | 373 | 4041424 | 4042545 |
204347 | ssuD | hypothetical | YPO3625 | alkanesulfonate monooxygenase catalyzes the release of sulfite from alkanesulfonates | genbank | 16123767 | NP_407080.1 | 382 | 4042564 | 4043712 |
204348 | ssuC | hypothetical | YPO3626 | putative aliphatic sulfonates transport permease protein Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC SW:SSUC_ECOLI (P75851) (263 aa) fasta scores: E(): 0, 79.9% id in 259 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter Pa3443 TR:AAG06831 (EMBL:AE004765) (262 aa) fasta scores: E(): 0, 81.0% id in 263 aa | genbank | 16123768 | NP_407081.1 | 265 | 4043721 | 4044518 |
Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
204349 | ssuB | hypothetical | YPO3627 | putative aliphatic sulfonates transport ATP-binding protein Similar to Escherichia coli putative aliphatic sulfonates transport ATP-binding protein SsuB SW:SSUB_ECOLI (P38053) (255 aa) fasta scores: E(): 0, 72.3% id in 235 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa3442 TR:AAG06830 (EMBL:AE004765) (274 aa) fasta scores: E(): 0, 73.0% id in 241 aa | genbank | 16123769 | NP_407082.1 | 271 | 4044515 | 4045330 |
204350 | hypothetical | YPO3628 | putative DNA-damage-inducible protein Similar to Escherichia coli DNA-damage-inducible protein J DinJ SW:DINJ_ECOLI (Q47150) (86 aa) fasta scores: E(): 1.2e-05, 36.7% id in 60 aa, and to the previously sequenced Yersinia pestis Orf11 TR:Q9RPP0 (EMBL:AF152923) (86 aa) fasta scores: E(): 0.003, 31.7% id in 60 aa | genbank | 16123770 | NP_407083.1 | 67 | 4045949 | 4046152 | |
204351 | hypothetical | YPO3629 | putative xanthine/uracil permease Similar to Escherichia coli hypothetical 45.7 kDa protein in soxR-acs intergenic region YjcD SW:YJCD_ECOLI (P32702) (449 aa) fasta scores: E(): 0, 85.0% id in 448 aa, and to Shewanella massilia hypothetical membrane protein TR:O87945 (EMBL:AJ006085) (450 aa) fasta scores: E(): 0, 76.0% id in 445 aa | genbank | 16123771 | NP_407084.1 | 451 | 4046606 | 4047961 | |
204352 | hypothetical | YPO3630 | putative putative Na(+)/H(+) exchanger protein Similar to Escherichia coli putative Na(+)/H(+) exchanger YjcE SW:YJCE_ECOLI (P32703) (549 aa) fasta scores: E(): 0, 75.1% id in 547 aa | genbank | 16123772 | NP_407085.1 | 549 | 4048310 | 4049959 | |
204353 | hypothetical | YPO3631 | hypothetical protein no significant database matches | genbank | 16123773 | NP_407086.1 | 395 | 4050177 | 4051364 | |
204354 | hypothetical | YPO3632 | lipid A biosynthesis lauroyl acyltransferase Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA | genbank | 16123774 | NP_407087.1 | 306 | 4051516 | 4052436 | |
204355 | hypothetical | YPO3633 | putative periplasmic binding protein Similar to Escherichia coli from bases 1598243 to 1608845 TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 1e-15, 29.2% id in 312 aa, and to Streptomyces coelicolor putative secreted solute-binding lipoprotein scf43.19C TR:Q9RD69 (EMBL:AL136502) (360 aa) fasta scores: E(): 2.3e-16, 28.3% id in 315 aa | genbank | 16123775 | NP_407088.1 | 352 | 4053161 | 4054219 | |
204356 | hypothetical | YPO3634 | ABC transporter ATP binding protein Similar to Streptomyces coelicolor ABC transporter ATP binding protein Sc3f9.02 TR:O69942 (EMBL:AL023862) (505 aa) fasta scores: E(): 0, 36.9% id in 502 aa, and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0, 38.3% id in 496 aa | genbank | 16123776 | NP_407089.1 | 498 | 4054423 | 4055919 | |
204357 | hypothetical | YPO3635 | putative branched-chain amino acid transport system, permease component Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 7.8e-29, 35.4% id in 297 aa, and to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 7.7e-31, 34.3% id in 300 aa | genbank | 16123777 | NP_407090.1 | 329 | 4055912 | 4056901 | |
204358 | hypothetical | YPO3636 | putative ABC transporter, permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 2.6e-30, 37.2% id in 304 aa, and to Bacillus halodurans ribose ABC transporter RbsC TR:Q9K6J8 (EMBL:AP001519) (314 aa) fasta scores: E(): 5.8e-30, 36.5% id in 299 aa | genbank | 16123778 | NP_407091.1 | 317 | 4056903 | 4057856 | |
204359 | hypothetical | YPO3637 | putative carbohydrate kinase Similar to Escherichia coli ribitol kinase RtlK TR:AAG01884 (EMBL:AY005817) (534 aa) fasta scores: E(): 0, 45.9% id in 529 aa, and to Klebsiella pneumoniae ribitol kinase RbtK TR:O52716 (EMBL:AF045244) (535 aa) fasta scores: E(): 0, 45.1% id in 526 aa | genbank | 16123779 | NP_407092.1 | 545 | 4057875 | 4059512 | |
204360 | hypothetical | YPO3638 | putative phosphosugar isomerase/binding protein Similar to Aquifex aeolicus hypothetical protein Aq_1546 SW:YF46_AQUAE (O67500) (322 aa) fasta scores: E(): 1.1e-21, 38.3% id in 180 aa, and to Haemophilus influenzae hypothetical protein Hi1678 SW:YRBH_HAEIN (P45313) (337 aa) fasta scores: E(): 3e-21, 35.1% id in 185 aa | genbank | 16123780 | NP_407093.1 | 201 | 4059509 | 4060114 | |
204361 | hypothetical | YPO3639 | putative glutathione S-transferase Similar to Escherichia coli hypothetical 32.4 kDa protein in gsp-hybG intergenic region YghU SW:YGHU_ECOLI (Q46845) (288 aa) fasta scores: E(): 0, 70.3% id in 279 aa, and to Pseudomonas aeruginosa probable glutathione S-transferase Pa1033 TR:AAG04422 (EMBL:AE004536) (213 aa) fasta scores: E(): 0, 42.7% id in 225 aa | genbank | 16123781 | NP_407094.1 | 284 | 4060304 | 4061158 | |
204362 | hypothetical | YPO3640 | hypothetical protein Similar to Campylobacter jejuni putative periplasmic protein Cj0728 TR:Q9PPH9 (EMBL:AL139076) (441 aa) fasta scores: E(): 0, 50.7% id in 440 aa | genbank | 16123782 | NP_407095.1 | 448 | 4061409 | 4062755 | |
Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
204363 | hypothetical | YPO3641 | hypothetical protein no significant database hits | genbank | 16123783 | NP_407096.1 | 391 | 4062862 | 4064037 | |
204364 | tnp | hypothetical | YPO3642 | transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200, TnpA, SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 93.4% id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0, 99.3% id in 152 aa | genbank | 16123784 | NP_407097.1 | 152 | 4064442 | 4064900 |
204365 | cspa2 | hypothetical | YPO3643 | major cold shock protein Cspa2 Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2e-29, 95.7% id in 70 aa, and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.6e-28, 94.3% id in 70 aa, and identical to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 2.2e-30, 100.0% id in 70 aa. This CDS is almost identical (97.4%) to the one immediately upstream (YPO3644). It is also similar to YPO2659 (88.0% identity in 75 aa overlap), YPO1655 (78.6% identity in 70 aa overlap), YPO2595 ( 72.2% identity in 72 aa overlap), YPO1746 (76.1% identity in 67 aa overlap) and YPO1398 (50.0% identity in 70 aa overlap) | genbank | 16123785 | NP_407098.1 | 70 | 4065083 | 4065295 |
204366 | cspa1 | hypothetical | YPO3644 | major cold shock protein Cspa1 Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2.1e-29, 97.1% id in 70 aa, and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.7e-28, 95.7% id in 70 aa, and to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 1e-29, 98.6% id in 70 aa. This CDS is almost identical (97.4%) to the one immediately downstream (YPO36433). It is also similar to YPO2659 (90.7% identity in 75 aa overlap), YPO1655 (80.0% identity in 70 aa overlap), YPO2595 ( 73.6% identity in 72 aa overlap), YPO1746 (77.6% identity in 67 aa overlap) and YPO1398 (51.4% identity in 70 aa overlap) | genbank | 16123786 | NP_407099.1 | 70 | 4065555 | 4065767 |
204367 | hypothetical | YPO3645 | hypothetical protein no significant database hits | genbank | 16123787 | NP_407100.1 | 54 | 4065860 | 4066024 | |
204368 | pcp | hypothetical | YPO3646 | outer membrane lipoprotein Similar to Yersinia enterocolitica outer membrane lipoprotein Pcp precursor Pcp or PcpY SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0, 73.7% id in 156 aa, and to Salmonella typhimurium outer membrane lipoprotein SlyB precursor slyB SW:SLYB_SALTY (Q53549) (155 aa) fasta scores: E(): 4.2e-31, 69.2% id in 156 aa. Similar to YPO2373 (69.9% identity in 156 aa overlap) and YPO0752 (pseudogene) | genbank | 16123788 | NP_407101.1 | 155 | 4066300 | 4066767 |
204369 | hypothetical | YPO3647 | hypothetical protein Similar to Archaeoglobus fulgidus hypothetical protein AF1509 TR:O28763 (EMBL:AE000998) (262 aa) fasta scores: E(): 2.5e-11, 28.7% id in 272 aa, and to Deinococcus radiodurans conserved hypothetical protein DR1823 TR:Q9RTE2 (EMBL:AE002022) (253 aa) fasta scores: E(): 3.6e-07, 29.5% id in 207 aa | genbank | 16123789 | NP_407102.1 | 275 | 4067228 | 4068055 | |
204370 | hypothetical | YPO3648 | putative 2-hydroxy-3-oxopropionate reductase Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GarR or B3125 SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 1e-24, 31.4% id in 283 aa, and to Bacillus subtilis hypothetical 30.7 kDa protein in mcpC-kinA intergenic region YkwC SW:YKWC_BACSU (O34948) (288 aa) fasta scores: E(): 1.1e-23, 32.1% id in 290 aa | genbank | 16123790 | NP_407103.1 | 296 | 4068120 | 4069010 | |
204371 | hypothetical | YPO3649 | putative gamma carboxymuconolactone decarboxylase Similar to Agrobacterium radiobacter gamma carboxymuconolactone decarboxylase PcaC TR:Q9KX42 (EMBL:U32867) (144 aa) fasta scores: E(): 6.3e-17, 41.0% id in 117 aa, and to Pseudomonas aeruginosa gamma-carboxymuconolactone decarboxylase Pcac or Pa0232 TR:AAG03621 (EMBL:AE004461) (133 aa) fasta scores: E(): 3.9e-19, 43.6% id in 117 aa | genbank | 16123791 | NP_407104.1 | 131 | 4069188 | 4069583 | |
204372 | hypothetical | YPO3650 | putative metabolite transport protein Similar to Escherichia coli proline/betaine transporter ProP SW:PROP_ECOLI (P30848) (500 aa) fasta scores: E(): 5.9e-26, 27.4% id in 449 aa | genbank | 16123792 | NP_407105.1 | 454 | 4069737 | 4071101 | |
204373 | hypothetical | YPO3651 | putative GntR-family transcriptional regulatory protein Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SC9A4.30 TR:CAC01657 (EMBL:AL391072) (224 aa) fasta scores: E(): 8.8e-11, 31.8% id in 176 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA0797 TR:AAG04186 (EMBL:AE004515) (240 aa) fasta scores: E(): 1.1e-10, 29.6% id in 216 aa | genbank | 16123793 | NP_407106.1 | 220 | 4071191 | 4071853 | |
204374 | hypothetical | YPO3652 | hypothetical protein no significant database hits | genbank | 16123794 | NP_407107.1 | 158 | 4071919 | 4072395 | |
204375 | hypothetical | YPO3653 | putative colicin immunity protein Similar to the C-terminal region of Escherichia coli colicin D immunity protein Cdi SW:IMMD_ECOLI (P11899) (87 aa) fasta scores: E(): 0.86, 38.7% id in 31 aa | genbank | 16123795 | NP_407108.1 | 39 | 4072626 | 4072745 | |
204376 | fiS | hypothetical | YPO3654 | DNA-binding protein Fis Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters | genbank | 16123796 | NP_407109.1 | 98 | 4073149 | 4073445 |
Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
204377 | hypothetical | YPO3655 | hypothetical protein Similar to Escherichia coli hypothetical protein YhdG SW:YHDG_ECOLI (P25717) (321 aa) fasta scores: E(): 0, 87.9% id in 321 aa, and to Serratia marcescens YhdG homolog TR:O52532 (EMBL:AF040378) (334 aa) fasta scores: E(): 0, 92.2% id in 321 aa | genbank | 16123797 | NP_407110.1 | 321 | 4073470 | 4074435 | |
204378 | prmA | hypothetical | YPO3656 | ribosomal protein L11 methyltransferase Methylates ribosomal protein L11 | genbank | 16123798 | NP_407111.1 | 293 | 4075024 | 4075905 |
204379 | panF | hypothetical | YPO3657 | sodium/panthothenate symporter mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase | genbank | 16123799 | NP_407112.1 | 484 | 4075981 | 4077435 |
204380 | hypothetical | YPO3657a | hypothetical protein Similar to Escherichia coli hypothetical 9.1 kDa protein in accC-panF intergenic region YhdT SW:YHDT_ECOLI (P45566) (80 aa) fasta scores: E(): 1.1e-20, 68.4% id in 79 aa, and to Haemophilus influenzae hypothetical protein Hi0974.1 SW:YHDT_HAEIN (P46455) (85 aa) fasta scores: E(): 1.2e-12, 47.4% id in 78 aa | genbank | 16123800 | NP_407113.1 | 80 | 4077425 | 4077667 | |
204381 | accC | hypothetical | YPO3658 | acetyl-CoA carboxylase Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism | genbank | 16123801 | NP_407114.1 | 449 | 4079025 | 4080374 |
204382 | accB | hypothetical | YPO3659 | acetyl-CoA carboxylase Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism | genbank | 16123802 | NP_407115.1 | 154 | 4080386 | 4080850 |
204383 | aroQ | hypothetical | YPO3660 | 3-dehydroquinate dehydratase catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis | genbank | 16123803 | NP_407116.1 | 150 | 4081008 | 4081460 |
204384 | hypothetical | YPO3661 | hypothetical protein Similar to Escherichia coli from bases 2030342 to 2040230 TR:P76343 (EMBL:AE000288) (211 aa) fasta scores: E(): 0, 69.0% id in 203 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4691 TR:AAG08077 (EMBL:AE004883) (202 aa) fasta scores: E(): 3e-24, 41.8% id in 196 aa | genbank | 16123804 | NP_407117.1 | 206 | 4081723 | 4082343 | |
204385 | hypothetical | YPO3662 | hypothetical protein Similar to Escherichia coli hypothetical protein B1971 TR:P76342 (EMBL:AE000288) (334 aa) fasta scores: E(): 0, 75.4% id in 334 aa, and to Pasteurella multocida hypothetical protein PM0537 TR:AAK02621 (EMBL:AE006089) (343 aa) fasta scores: E(): 0, 64.3% id in 333 aa | genbank | 16123805 | NP_407118.1 | 366 | 4082343 | 4083443 | |
204386 | hypothetical | YPO3663 | probable zinc-binding dehydrogenase Similar to Escherichia coli protein YhdH SW:YHDH_ECOLI (P26646) (324 aa) fasta scores: E(): 0, 74.4% id in 324 aa, and to Vibrio cholerae zinc-binding alcohol dehydrogenase Vc0026 TR:Q9KVW2 (EMBL:AE004094) (326 aa) fasta scores: E(): 0, 63.2% id in 323 aa | genbank | 16123806 | NP_407119.1 | 325 | 4083666 | 4084643 | |
204387 | hypothetical | YPO3664 | hypothetical protein Similar to Escherichia coli hypothetical 73.3 kDa protein in mreB-accB intergenic region YhdA SW:YHDA_ECOLI (P13518) (646 aa) fasta scores: E(): 0, 50.7% id in 641 aa, and to Vibrio cholerae MshA biogenesis protein Vc0398 TR:Q9KUW1 (EMBL:AE004128) (673 aa) fasta scores: E(): 0, 36.1% id in 646 aa | genbank | 16123807 | NP_407120.1 | 638 | 4085044 | 4086960 | |
204388 | mreB | hypothetical | YPO3665 | rod shape-determining protein MreB Similar to Escherichia coli rod shape-determining protein MreB or EnvB or RodY SW:MREB_ECOLI (P13519) (347 aa) fasta scores: E(): 0, 99.1% id in 347 aa, and to Vibrio cholerae MreB or Vc0415 TR:Q9ZA92 (EMBL:AF079234) (347 aa) fasta scores: E(): 0, 90.2% id in 347 aa | genbank | 16123808 | NP_407121.1 | 347 | 4087297 | 4088340 |
204389 | mreC | hypothetical | YPO3666 | rod shape-determining protein MreC Similar to Escherichia coli rod shape-determining protein MreC SW:MREC_ECOLI (P16926) (367 aa) fasta scores: E(): 0, 77.9% id in 335 aa, and to Haemophilus influenzae rod shape-determining protein MreC or Hi0038 SW:MREC_HAEIN (P44475) (351 aa) fasta scores: E(): 0, 51.2% id in 295 aa | genbank | 16123809 | NP_407122.1 | 331 | 4088544 | 4089539 |
204390 | mreD | hypothetical | YPO3667 | rod shape-determining protein MreD Similar to Escherichia coli rod shape-determining protein MreD SW:MRED_ECOLI (P16927) (162 aa) fasta scores: E(): 0, 76.1% id in 159 aa, and to Vibrio cholerae rod shape-determining protein MreD Vc0417 TR:Q9KUU8 (EMBL:AE004129) (162 aa) fasta scores: E(): 0, 55.5% id in 155 aa | genbank | 16123810 | NP_407123.1 | 162 | 4089536 | 4090024 |
Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
204391 | maf | hypothetical | YPO3668 | Maf-like protein overexpression in Bacillus subtilis inhibits septation in the dividing cell | genbank | 16123811 | NP_407124.1 | 197 | 4090038 | 4090631 |
204392 | cafA | hypothetical | YPO3669 | ribonuclease G Similar to Escherichia coli ribonuclease G CafA or Rng SW:RNG_ECOLI (P25537) (488 aa) fasta scores: E(): 0, 90.2% id in 488 aa, and to Vibrio cholerae cytoplasmic axial filament protein Vc0419 TR:Q9KUU6 (EMBL:AE004129) (489 aa) fasta scores: E(): 0, 79.8% id in 489 aa | genbank | 16123812 | NP_407125.1 | 489 | 4090621 | 4092090 |
204393 | hypothetical | YPO3670 | hypothetical protein Similar to Vibrio cholerae hypothetical protein Vc0420 TR:Q9KUU5 (EMBL:AE004129) (1291 aa) fasta scores: E(): 0, 29.3% id in 1341 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4476 TR:AAG07864 (EMBL:AE004861) (1276 aa) fasta scores: E(): 9.1e-32, 23.7% id in 1335 aa | genbank | 16123813 | NP_407126.1 | 1307 | 4092184 | 4096107 | |
204394 | hypothetical | YPO3671 | putative carbon-nitrogen hydrolase Similar to Mus musculus nitrilase 1 nit1 TR:Q9R1N4 (EMBL:AF069988) (323 aa) fasta scores: E(): 0, 38.4% id in 284 aa, and to Vibrio cholerae hypothetical protein Vc0421 vc0421 TR:Q9KUU4 (EMBL:AE004129) (275 aa) fasta scores: E(): 0, 48.1% id in 270 aa | genbank | 16123814 | NP_407127.1 | 289 | 4096104 | 4096973 | |
204395 | tldD | hypothetical | YPO3672 | putative modulator of DNA gyrase Similar to Escherichia coli TldD protein, modulator of interaction between LetD protein and DNA gyrase SW:TLDD_ECOLI (P46473) (481 aa) fasta scores: E(): 0, 84.4% id in 481 aa, and to Vibrio cholerae TldD protein VC0422 TR:Q9KUU3 (EMBL:AE004129) (481 aa) fasta scores: E(): 0, 69.8% id in 480 aa | genbank | 16123815 | NP_407128.1 | 481 | 4096985 | 4098430 |
204396 | hypothetical | YPO3673 | putative insecticidal toxin Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0, 52.2% id in 718 aa. Similar to YPO3674 (79.1% identity in 949 aa overlap), YPO2312 (52.1% identity in 729 aa overlap) and YPO2380 (52.2% identity in 696 aa overlap). Note the differing C-terminus of the product of this CDS | genbank | 16123816 | NP_407129.1 | 952 | 4098633 | 4101491 | |
204397 | hypothetical | YPO3674 | putative insecticidal toxin Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0, 53.7% id in 680 aa, to Serratia entomophila SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0, 53.3% id in 685 aa. Similar to YPO3673 (79.1% identity in 949 aa overlap), YPO2312 (50.3% identity in 773 aa overlap) and YPO2380 (51.4% identity in 699 aa overlap). Note the differing C-terminus of the product of this CDS | genbank | 16123817 | NP_407130.1 | 1011 | 4101516 | 4104551 | |
204398 | hypothetical | YPO3675 | hypothetical protein no significant database matches | genbank | 16123818 | NP_407131.1 | 119 | 4104548 | 4104907 | |
204399 | hypothetical | YPO3676 | putative phage-related protein Similar to Bacteriophage P27 hypothetical 14.1 kDa protein TR:Q9MBZ3 (EMBL:AJ249351) (125 aa) fasta scores: E(): 1.7e-26, 52.5% id in 120 aa, and to bacteriophage PS3 Gp19 TR:O80284 (EMBL:AJ011579) (132 aa) fasta scores: E(): 3.3e-19, 46.0% id in 137 aa | genbank | 16123819 | NP_407132.1 | 133 | 4104904 | 4105305 | |
204400 | hypothetical | YPO3677 | putative phage-related protein Similar to bacteriophage PS3 gp13 13 TR:O80283 (EMBL:AJ011579) (105 aa) fasta scores: E(): 3.2e-14, 41.7% id in 84 aa | genbank | 16123820 | NP_407133.1 | 100 | 4105318 | 4105620 | |
204401 | hypothetical | YPO3678 | insecticidal toxin complex Similar to Photorhabdus luminescens insecticidal toxin complex protein TcaC TR:O85153 (EMBL:AF046867) (1485 aa) fasta scores: E(): 0, 48.6% id in 1517 aa, and to Serratia entomophila SepB TR:AAG09643 (EMBL:AF135182) (1428 aa) fasta scores: E(): 0, 44.5% id in 1515 aa. Contains a 2x repeat: RDPDLS between codons 480..491. | genbank | 16123821 | NP_407134.1 | 1496 | 4105754 | 4110244 | |
204402 | hypothetical | YPO3681 | putative insecticial toxin Similar in its central region to Photorhabdus luminescens insecticidal toxin complex protein TcaA TR:O85151 (EMBL:AF046867) (1095 aa) fasta scores: E(): 2.1e-19, 35.2% id in 401 aa. Contains colied-coil domain at approx. residues 683..710 | genbank | 16123822 | NP_407135.1 | 833 | 4113934 | 4116435 | |
204403 | hypothetical | YPO3682 | putative lysR-family transcriptional regulatory protein Similar to Erwinia amylovora RlsA protein TR:O54509 (EMBL:AJ131559) (266 aa) fasta scores: E(): 6.3e-06, 28.5% id in 228 aa, and to Escherichia coli hypothetical transcriptional regulator YgfI SW:YGFI_ECOLI (P52044) (303 aa) fasta scores: E(): 2.8e-06, 27.8% id in 198 aa | genbank | 16123823 | NP_407136.1 | 288 | 4116671 | 4117537 | |
204404 | hypothetical | YPO3683 | probable lysR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YhcS SW:YHCS_ECOLI (P45691) (309 aa) fasta scores: E(): 0, 80.7% id in 301 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA2877 TR:AAG06265 (EMBL:AE004714) (297 aa) fasta scores: E(): 4.1e-27, 30.4% id in 296 aa | genbank | 16123824 | NP_407137.1 | 303 | 4117798 | 4118709 | |
Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
204405 | hypothetical | YPO3684 | hypothetical protein Similar to Escherichia coli hypothetical 10.3 kDa protein in argR-cafA intergenic region YhcR SW:YHCR_ECOLI (P46478) (90 aa) fasta scores: E(): 1.4e-24, 81.8% id in 66 aa, and to Escherichia coli hypothetical 8.9 kDa protein in slyA-sodC intergenic region YdhI SW:YDHI_ECOLI (P76184) (78 aa) fasta scores: E(): 0.017, 34.4% id in 61 aa | genbank | 16123825 | NP_407138.1 | 67 | 4119012 | 4119215 | |
204406 | hypothetical | YPO3685 | putative HlyD family secretion protein Similar to Escherichia coli hypothetical protein YhcQ SW:YHCQ_ECOLI (P46482) (310 aa) fasta scores: E(): 0, 72.3% id in 311 aa, and to Escherichia coli fusaric acid resistance protein FusE TR:P76893 (EMBL:D90807) (329 aa) fasta scores: E(): 0, 38.5% id in 288 aa | genbank | 16123826 | NP_407139.1 | 311 | 4119223 | 4120158 | |
204407 | hypothetical | YPO3686 | hypothetical protein Similar to Escherichia coli hypothetical 73.6 kDa protein in argR-cafA intergenic region YhcP SW:YHCP_ECOLI (P46481) (655 aa) fasta scores: E(): 0, 64.6% id in 642 aa | genbank | 16123827 | NP_407140.1 | 651 | 4120160 | 4122115 | |
204408 | hypothetical | YPO3689 | putative ribonuclease Similar to Bacillus amyloliquefaciens ribonuclease precursor SW:RNBR_BACAM (P00648) (157 aa) fasta scores: E(): 1.9e-23, 52.4% id in 124 aa, and to Bacillus circulans ribonuclease SW:RN_BACCI (P35078) (110 aa) fasta scores: E(): 2e-22, 62.0% id in 100 aa | genbank | 16123828 | NP_407141.1 | 152 | 4124060 | 4124518 | |
204409 | hypothetical | YPO3690 | putative ribonuclease inhibitor Similar to Bacillus amyloliquefaciens Barstar SW:BARS_BACAM (P11540) (89 aa) fasta scores: E(): 0.00075, 33.3% id in 60 aa, and to Escherichia coli hypothetical protein YhcO SW:YHCO_ECOLI (P46480) (90 aa) fasta scores: E(): 9.4e-16, 53.0% id in 83 aa | genbank | 16123829 | NP_407142.1 | 93 | 4124523 | 4124804 | |
204410 | hypothetical | YPO3691 | hypothetical protein Similar to Escherichia coli hypothetical protein YjgA or X96 SW:YJGA_ECOLI (P26650) (183 aa) fasta scores: E(): 0, 78.0% id in 182 aa, and to Haemophilus influenzae hypothetical protein HI1151 SW:YJGA_HAEIN (P45076) (178 aa) fasta scores: E(): 5.9e-31, 56.6% id in 175 aa | genbank | 16123830 | NP_407143.1 | 182 | 4124916 | 4125464 | |
204411 | pmbA | hypothetical | YPO3692 | Putative modulator of DNA gyrase Similar to Escherichia coli PmbA protein or TldE SW:PMBA_ECOLI (P24231) (450 aa) fasta scores: E(): 0, 82.7% id in 446 aa, and to Vibrio cholerae PmbA protein Vc2535 TR:Q9KP44 (EMBL:AE004322) (447 aa) fasta scores: E(): 0, 66.9% id in 447 aa | genbank | 16123831 | NP_407144.1 | 446 | 4125645 | 4126985 |
204412 | hypothetical | YPO3693 | hypothetical protein Weakly similar to Haemophilus influenzae methionine aminopeptidase Map or HI1722 SW:AMPM_HAEIN (P44421) (268 aa) fasta scores: E(): 2.1, 26.6% id in 199 aa, and to the C-terminal region of Mycobacterium tuberculosis prolyl-tRNA synthetase ProS or Rv2845c or Mtcy24a1.12 SW:SYP_MYCTU (O05814) (582 aa) fasta scores: E(): 1.9, 27.3% id in 128 aa | genbank | 16123832 | NP_407145.1 | 212 | 4127240 | 4127878 | |
204413 | hypothetical | YPO3694 | putative cytochrome Similar to Escherichia coli soluble cytochrome B562 precursor CybC SW:C562_ECOLI (P00192) (128 aa) fasta scores: E(): 8.3e-21, 51.6% id in 128 aa, and to the previously sequenced Yersinia pestis cytochrome C CybC TR:Q9X6B1 (EMBL:AF135170) (127 aa) fasta scores: E(): 6.3e-15, 46.1% id in 115 aa | genbank | 16123833 | NP_407146.1 | 128 | 4128086 | 4128472 | |
204414 | rnk | hypothetical | YPO3695 | nucleoside diphosphate kinase regulator Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation | genbank | 16123834 | NP_407147.1 | 136 | 4128696 | 4129106 |
204415 | treC | hypothetical | YPO3696 | putative trehalose-6-phosphate hydrolase Similar to Escherichia coli trehalose-6-phosphate hydrolase TreC or OlgH SW:TREC_ECOLI (P28904) (551 aa) fasta scores: E(): 0, 74.0% id in 547 aa, and to Vibrio cholerae trehalose-6-phosphate hydrolase Vc0911 TR:Q9KTJ1 (EMBL:AE004175) (562 aa) fasta scores: E(): 0, 60.9% id in 550 aa | genbank | 16123835 | NP_407148.1 | 555 | 4129459 | 4131126 |
204416 | treB | hypothetical | YPO3697 | PTS system, trehalose-specific IIBC component Similar to Escherichia coli PTS system, trehalose-specific IIBC component TreB SW:PTTB_ECOLI (P36672) (473 aa) fasta scores: E(): 0, 80.5% id in 471 aa, and to Vibrio cholerae PTS system, trehalose-specific IIBC component Vc0910 TR:Q9KTJ2 (EMBL:AE004175) (478 aa) fasta scores: E(): 0, 70.0% id in 474 aa | genbank | 16123836 | NP_407149.1 | 483 | 4131221 | 4132672 |
204417 | treR | hypothetical | YPO3698 | trehalose repressor regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon | genbank | 16123837 | NP_407150.1 | 317 | 4133047 | 4134000 |
204418 | hypothetical | YPO3699 | hypothetical protein no significant database matches | genbank | 16123838 | NP_407151.1 | 158 | 4134234 | 4134710 | |
Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
204419 | hypothetical | YPO3700 | transposase/IS protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein, IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0, 47.4% id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0, 99.6% id in 260 aa. | genbank | 16123839 | NP_407152.1 | 260 | 4134826 | 4135608 | |
204420 | hypothetical | YPO3701 | transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27, 33.1% id in 329 aa. Identical to the previously sequenced Yersinia pestis, Yersinia pseudotuberculosis, and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0, 100.0% id in 340 aa | genbank | 16123840 | NP_407153.1 | 340 | 4135605 | 4136627 | |
204421 | hypothetical | YPO3702 | truncated IS1661 DNA-binding protein This CDS has been disrupted by the insertion of an IS100 element. This truncated CDS shows similarities to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 37.3% identity in 102 aa overlap. | genbank | 16123841 | NP_407154.1 | 104 | 4136714 | 4137028 | |
204422 | hypothetical | YPO3703 | IS1661 transposase Similar to Escherichia coli insertion sequence IS1397 transposase, OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0, 53.0% id in 234 aa | genbank | 16123842 | NP_407155.1 | 261 | 4137082 | 4137867 | |
204423 | hypothetical | YPO3705 | hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0109 TR:Q9KN56 (EMBL:AE004353) (145 aa) fasta scores: E(): 4.2e-13, 36.7% id in 128 aa, and to Pseudomonas aeruginosa hypothetical protein PA1659 TR:AAG05048 (EMBL:AE004593) (135 aa) fasta scores: E(): 5.6e-08, 33.9% id in 124 aa | genbank | 16123843 | NP_407156.1 | 146 | 4138983 | 4139423 | |
204424 | hypothetical | YPO3706 | hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0, 77.0% id in 473 aa, and to Pseudomonas aeruginosa hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0, 66.7% id in 474 aa | genbank | 16123844 | NP_407157.1 | 493 | 4139430 | 4140911 | |
204425 | hypothetical | YPO3707 | hypothetical protein Similar to Escherichia coli hypothetical protein 498 TR:O52670 (EMBL:AF044503) (166 aa) fasta scores: E(): 0, 62.0% id in 166 aa, and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 0, 61.3% id in 160 aa | genbank | 16123845 | NP_407158.1 | 165 | 4140979 | 4141476 | |
204426 | hypothetical | YPO3708 | hypothetical protein Similar to Escherichia coli hypothetical protein TR:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 0, 80.2% id in 172 aa, and to Vibrio cholerae secreted hydrophilic protein Hcp or HcpA or VCA0017 or VC1415 TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 0, 77.3% id in 172 aa | genbank | 16123846 | NP_407159.1 | 172 | 4142000 | 4142518 | |
204427 | hypothetical | YPO3709 | hypothetical protein no significant database hits | genbank | 16123847 | NP_407160.1 | 112 | 4142670 | 4143008 | |
204428 | malM | hypothetical | YPO3710 | maltose operon periplasmic protein Similar to Escherichia coli maltose operon periplasmic protein precursor MalM or MolA SW:MALM_ECOLI (P03841) (306 aa) fasta scores: E(): 0, 51.9% id in 308 aa, and to Salmonella typhimurium maltose operon periplasmic protein precursor MalM SW:MALM_SALTY (P26478) (305 aa) fasta scores: E(): 0, 51.1% id in 307 aa | genbank | 16123848 | NP_407161.1 | 309 | 4143419 | 4144348 |
204429 | lamB | hypothetical | YPO3711 | maltoporin precursor porin involved in the transport of maltose and maltodextrins | genbank | 16123849 | NP_407162.1 | 423 | 4144571 | 4145842 |
204430 | malK | hypothetical | YPO3712 | maltose/maltodextrin transport ATP-binding protein Similar to Escherichia coli maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0, 84.6% id in 371 aa, and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_SALTY (P19566) (369 aa) fasta scores: E(): 0, 84.3% id in 369 aa. Similar to YPO0857 (52.7% identity in 357 aa overlap), YPO3793 (47.5% identity in 358 aa overlap), YPO1896 (59.6% identity in 275 aa overlap), YPO0609 (47.7% identity in 369 aa overlap), YPO3469 ( 49.9% identity in 357 aa overlap) | genbank | 16123850 | NP_407163.1 | 369 | 4145913 | 4147022 |
204431 | hypothetical | YPO3713 | hypothetical protein no significant database hits | genbank | 16123851 | NP_407164.1 | 78 | 4147026 | 4147262 | |
204432 | malE | hypothetical | YPO3714 | periplasmic maltose-binding protein functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis | genbank | 16123852 | NP_407165.1 | 403 | 4147824 | 4149035 |
Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
204433 | malF | hypothetical | YPO3715 | maltose transport system permease protein MalF Similar to Escherichia coli maltose transport system permease protein MalF SW:MALF_ECOLI (P02916) (514 aa) fasta scores: E(): 0, 75.4% id in 513 aa, and to Enterobacter aerogenes maltose transport system permease protein MalF SW:MALF_ENTAE (P18812) (514 aa) fasta scores: E(): 0, 75.2% id in 513 aa | genbank | 16123853 | NP_407166.1 | 525 | 4149222 | 4150799 |