Yersinia pestis CO92 proteome

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200934-201033 (1-100) 201034-201133 (101-200) 201134-201233 (201-300) 201234-201333 (301-400) 201334-201433 (401-500)
201434-201533 (501-600) 201534-201633 (601-700) 201634-201733 (701-800) 201734-201833 (801-900) 201834-201933 (901-1000)
201934-202033 (1001-1100) 202034-202133 (1101-1200) 202134-202233 (1201-1300) 202234-202333 (1301-1400) 202334-202433 (1401-1500)
202434-202533 (1501-1600) 202534-202633 (1601-1700) 202634-202733 (1701-1800) 202734-202833 (1801-1900) 202834-202933 (1901-2000)
202934-203033 (2001-2100) 203034-203133 (2101-2200) 203134-203233 (2201-2300) 203234-203333 (2301-2400) 203334-203433 (2401-2500)
203434-203533 (2501-2600) 203534-203633 (2601-2700) 203634-203733 (2701-2800) 203734-203833 (2801-2900) 203834-203933 (2901-3000)
203934-204033 (3001-3100) 204034-204133 (3101-3200) 204134-204233 (3201-3300) 204234-204333 (3301-3400) [204334-204433 (3401-3500)]
204434-204533 (3501-3600) 204534-204633 (3601-3700) 204634-204733 (3701-3800) 204734-204818 (3801-3885)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204334 hypothetical YPO3612 putative transcriptional regulatory protein
Similar to Vibrio cholerae cryptic phage Ctxphi transcriptional repressor RstR (RstR1 or VC1455) and (RstR2 or VC1464) TR:O34419 (EMBL:U83796) (112 aa) fasta scores: E(): 6.8e-08, 33.6% id in 107 aa, and to Bacillus subtilis putative PbsX repressor Xre SW:XRE_BACSU (P23789) (113 aa) fasta scores: E(): 3.1e-05, 30.2% id in 106 aa
genbank 16123754 NP_407067.1 135 4025613 4026020
204335 hypothetical YPO3613 putative Rhs accessory genetic element
Similar to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0, 46.7% id in 599 aa, and to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 51.2% id in 531 aa. Similar to YPO3606 (78.0% identity in 803 aa overlap) and to YPO0764 (76.2% identity in 621 aa overlap)
genbank 16123755 NP_407068.1 732 4026381 4028579
204336 hypothetical YPO3614 hypothetical protein
Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 7e-07, 26.5% id in 136 aa
genbank 16123756 NP_407069.1 140 4028582 4029004
204337 hypothetical YPO3615 hypothetical protein
Similar to Escherichia coli RhsC protein precursor SW:RHSC_ECOLI (P16918) (1397 aa) fasta scores: E(): 6.5e-20, 27.2% id in 1018 aa, and to Streptomyces coelicolor putative Rhs protein scd31.24 TR:Q9L0E3 (EMBL:AL161803) (927 aa) fasta scores: E(): 5.2e-31, 31.9% id in 889 aa
genbank 16123757 NP_407070.1 1512 4029049 4033587
204338 hypothetical YPO3616 hypothetical protein
Similar to Ureaplasma parvum hypothetical protein UU139 TR:Q9PR05 (EMBL:AE002114) (236 aa) fasta scores: E(): 1.1, 21.9% id in 192 aa
genbank 16123758 NP_407071.1 264 4033596 4034390
204339 hypothetical YPO3617 hypothetical protein
no significant database hits
genbank 16123759 NP_407072.1 299 4034737 4035636
204340 hypothetical YPO3618 putative oxidoreductase
Similar to Thermotoga maritima conserved hypothetical protein Tm0312 TR:Q9WYE8 (EMBL:AE001713) (328 aa) fasta scores: E(): 2.7e-11, 24.2% id in 240 aa, and to Bacillus subtilis hypothetical 37.8 kDa protein in csbX-nadA intergenic region YrbE SW:YRBE_BACSU (O05389) (341 aa) fasta scores: E(): 2.8e-11, 25.9% id in 332 aa
genbank 16123760 NP_407073.1 376 4035633 4036763
204341 hypothetical YPO3619 putative araC-family transcriptional regulatory protein
Similar to Pediococcus pentosaceus raffinose operon transcriptional regulatory protein RafR SW:RAFR_PEDPE (P43465) (277 aa) fasta scores: E(): 1.3e-12, 25.6% id in 270 aa
genbank 16123761 NP_407074.1 313 4036958 4037899
204342 hypothetical YPO3620 putative carbohydrate transport protein
Similar to Haemophilus influenzae high affinity ribose transport protein RbsD or Hi0501 SW:RBSD_HAEIN (P44734) (139 aa) fasta scores: E(): 1.3e-12, 34.0% id in 141 aa, and to Escherichia coli high affinity ribose transport protein RbsD SW:RBSD_ECOLI (P04982) (151 aa) fasta scores: E(): 9.9e-12, 32.4% id in 136 aa
genbank 16123762 NP_407075.1 167 4038061 4038564
204343 hypothetical YPO3621 probable carbohydrate kinase
Similar to Escherichia coli ribokinase RbsK SW:RBSK_ECOLI (P05054) (309 aa) fasta scores: E(): 1.6e-32, 35.9% id in 301 aa, and to Pseudomonas aeruginosa ribokinase Rbsk or Pa1950 TR:AAG05338 (EMBL:AE004621) (308 aa) fasta scores: E(): 0, 39.3% id in 298 aa
genbank 16123763 NP_407076.1 310 4038570 4039502
204344 hypothetical YPO3622 putative deoxyribose-phosphate aldolase
Similar to Bacillus subtilis deoxyribose-phosphate aldolase DeoC or Dra SW:DEOC_BACSU (P39121) (211 aa) fasta scores: E(): 1.9e-14, 32.2% id in 202 aa, and to Methanobacterium thermoautotrophicum probable deoxyribose-phosphate aldolase DeoC or Mth818 SW:DEOC_METTH (O26909) (224 aa) fasta scores: E(): 3.9e-18, 33.0% id in 227 aa
genbank 16123764 NP_407077.1 233 4039656 4040357
204345 ssuE hypothetical YPO3623 putative NAD(P)H-dependent FMN reductase
Similar to Escherichia coli NAD(P)H-dependent FMN reductase SsuE SW:SSUE_ECOLI (P80644) (191 aa) fasta scores: E(): 0, 61.1% id in 175 aa, and to Pseudomonas putida NADH-dependent FMN reductase SsuE SW:SSUE_PSEPU (O85762) (200 aa) fasta scores: E(): 0, 55.9% id in 195 aa
genbank 16123765 NP_407078.1 193 4040828 4041409
204346 ssuA hypothetical YPO3624 putative aliphatic sulfonates binding protein
Similar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 0, 73.1% id in 316 aa
genbank 16123766 NP_407079.1 373 4041424 4042545
204347 ssuD hypothetical YPO3625 alkanesulfonate monooxygenase
catalyzes the release of sulfite from alkanesulfonates
genbank 16123767 NP_407080.1 382 4042564 4043712
204348 ssuC hypothetical YPO3626 putative aliphatic sulfonates transport permease protein
Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC SW:SSUC_ECOLI (P75851) (263 aa) fasta scores: E(): 0, 79.9% id in 259 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter Pa3443 TR:AAG06831 (EMBL:AE004765) (262 aa) fasta scores: E(): 0, 81.0% id in 263 aa
genbank 16123768 NP_407081.1 265 4043721 4044518
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204349 ssuB hypothetical YPO3627 putative aliphatic sulfonates transport ATP-binding protein
Similar to Escherichia coli putative aliphatic sulfonates transport ATP-binding protein SsuB SW:SSUB_ECOLI (P38053) (255 aa) fasta scores: E(): 0, 72.3% id in 235 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa3442 TR:AAG06830 (EMBL:AE004765) (274 aa) fasta scores: E(): 0, 73.0% id in 241 aa
genbank 16123769 NP_407082.1 271 4044515 4045330
204350 hypothetical YPO3628 putative DNA-damage-inducible protein
Similar to Escherichia coli DNA-damage-inducible protein J DinJ SW:DINJ_ECOLI (Q47150) (86 aa) fasta scores: E(): 1.2e-05, 36.7% id in 60 aa, and to the previously sequenced Yersinia pestis Orf11 TR:Q9RPP0 (EMBL:AF152923) (86 aa) fasta scores: E(): 0.003, 31.7% id in 60 aa
genbank 16123770 NP_407083.1 67 4045949 4046152
204351 hypothetical YPO3629 putative xanthine/uracil permease
Similar to Escherichia coli hypothetical 45.7 kDa protein in soxR-acs intergenic region YjcD SW:YJCD_ECOLI (P32702) (449 aa) fasta scores: E(): 0, 85.0% id in 448 aa, and to Shewanella massilia hypothetical membrane protein TR:O87945 (EMBL:AJ006085) (450 aa) fasta scores: E(): 0, 76.0% id in 445 aa
genbank 16123771 NP_407084.1 451 4046606 4047961
204352 hypothetical YPO3630 putative putative Na(+)/H(+) exchanger protein
Similar to Escherichia coli putative Na(+)/H(+) exchanger YjcE SW:YJCE_ECOLI (P32703) (549 aa) fasta scores: E(): 0, 75.1% id in 547 aa
genbank 16123772 NP_407085.1 549 4048310 4049959
204353 hypothetical YPO3631 hypothetical protein
no significant database matches
genbank 16123773 NP_407086.1 395 4050177 4051364
204354 hypothetical YPO3632 lipid A biosynthesis lauroyl acyltransferase
Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
genbank 16123774 NP_407087.1 306 4051516 4052436
204355 hypothetical YPO3633 putative periplasmic binding protein
Similar to Escherichia coli from bases 1598243 to 1608845 TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 1e-15, 29.2% id in 312 aa, and to Streptomyces coelicolor putative secreted solute-binding lipoprotein scf43.19C TR:Q9RD69 (EMBL:AL136502) (360 aa) fasta scores: E(): 2.3e-16, 28.3% id in 315 aa
genbank 16123775 NP_407088.1 352 4053161 4054219
204356 hypothetical YPO3634 ABC transporter ATP binding protein
Similar to Streptomyces coelicolor ABC transporter ATP binding protein Sc3f9.02 TR:O69942 (EMBL:AL023862) (505 aa) fasta scores: E(): 0, 36.9% id in 502 aa, and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0, 38.3% id in 496 aa
genbank 16123776 NP_407089.1 498 4054423 4055919
204357 hypothetical YPO3635 putative branched-chain amino acid transport system, permease component
Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 7.8e-29, 35.4% id in 297 aa, and to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 7.7e-31, 34.3% id in 300 aa
genbank 16123777 NP_407090.1 329 4055912 4056901
204358 hypothetical YPO3636 putative ABC transporter, permease protein
Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 2.6e-30, 37.2% id in 304 aa, and to Bacillus halodurans ribose ABC transporter RbsC TR:Q9K6J8 (EMBL:AP001519) (314 aa) fasta scores: E(): 5.8e-30, 36.5% id in 299 aa
genbank 16123778 NP_407091.1 317 4056903 4057856
204359 hypothetical YPO3637 putative carbohydrate kinase
Similar to Escherichia coli ribitol kinase RtlK TR:AAG01884 (EMBL:AY005817) (534 aa) fasta scores: E(): 0, 45.9% id in 529 aa, and to Klebsiella pneumoniae ribitol kinase RbtK TR:O52716 (EMBL:AF045244) (535 aa) fasta scores: E(): 0, 45.1% id in 526 aa
genbank 16123779 NP_407092.1 545 4057875 4059512
204360 hypothetical YPO3638 putative phosphosugar isomerase/binding protein
Similar to Aquifex aeolicus hypothetical protein Aq_1546 SW:YF46_AQUAE (O67500) (322 aa) fasta scores: E(): 1.1e-21, 38.3% id in 180 aa, and to Haemophilus influenzae hypothetical protein Hi1678 SW:YRBH_HAEIN (P45313) (337 aa) fasta scores: E(): 3e-21, 35.1% id in 185 aa
genbank 16123780 NP_407093.1 201 4059509 4060114
204361 hypothetical YPO3639 putative glutathione S-transferase
Similar to Escherichia coli hypothetical 32.4 kDa protein in gsp-hybG intergenic region YghU SW:YGHU_ECOLI (Q46845) (288 aa) fasta scores: E(): 0, 70.3% id in 279 aa, and to Pseudomonas aeruginosa probable glutathione S-transferase Pa1033 TR:AAG04422 (EMBL:AE004536) (213 aa) fasta scores: E(): 0, 42.7% id in 225 aa
genbank 16123781 NP_407094.1 284 4060304 4061158
204362 hypothetical YPO3640 hypothetical protein
Similar to Campylobacter jejuni putative periplasmic protein Cj0728 TR:Q9PPH9 (EMBL:AL139076) (441 aa) fasta scores: E(): 0, 50.7% id in 440 aa
genbank 16123782 NP_407095.1 448 4061409 4062755
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204363 hypothetical YPO3641 hypothetical protein
no significant database hits
genbank 16123783 NP_407096.1 391 4062862 4064037
204364 tnp hypothetical YPO3642 transposase for the IS1541 insertion element
Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200, TnpA, SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 93.4% id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0, 99.3% id in 152 aa
genbank 16123784 NP_407097.1 152 4064442 4064900
204365 cspa2 hypothetical YPO3643 major cold shock protein Cspa2
Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2e-29, 95.7% id in 70 aa, and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.6e-28, 94.3% id in 70 aa, and identical to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 2.2e-30, 100.0% id in 70 aa. This CDS is almost identical (97.4%) to the one immediately upstream (YPO3644). It is also similar to YPO2659 (88.0% identity in 75 aa overlap), YPO1655 (78.6% identity in 70 aa overlap), YPO2595 ( 72.2% identity in 72 aa overlap), YPO1746 (76.1% identity in 67 aa overlap) and YPO1398 (50.0% identity in 70 aa overlap)
genbank 16123785 NP_407098.1 70 4065083 4065295
204366 cspa1 hypothetical YPO3644 major cold shock protein Cspa1
Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2.1e-29, 97.1% id in 70 aa, and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.7e-28, 95.7% id in 70 aa, and to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 1e-29, 98.6% id in 70 aa. This CDS is almost identical (97.4%) to the one immediately downstream (YPO36433). It is also similar to YPO2659 (90.7% identity in 75 aa overlap), YPO1655 (80.0% identity in 70 aa overlap), YPO2595 ( 73.6% identity in 72 aa overlap), YPO1746 (77.6% identity in 67 aa overlap) and YPO1398 (51.4% identity in 70 aa overlap)
genbank 16123786 NP_407099.1 70 4065555 4065767
204367 hypothetical YPO3645 hypothetical protein
no significant database hits
genbank 16123787 NP_407100.1 54 4065860 4066024
204368 pcp hypothetical YPO3646 outer membrane lipoprotein
Similar to Yersinia enterocolitica outer membrane lipoprotein Pcp precursor Pcp or PcpY SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0, 73.7% id in 156 aa, and to Salmonella typhimurium outer membrane lipoprotein SlyB precursor slyB SW:SLYB_SALTY (Q53549) (155 aa) fasta scores: E(): 4.2e-31, 69.2% id in 156 aa. Similar to YPO2373 (69.9% identity in 156 aa overlap) and YPO0752 (pseudogene)
genbank 16123788 NP_407101.1 155 4066300 4066767
204369 hypothetical YPO3647 hypothetical protein
Similar to Archaeoglobus fulgidus hypothetical protein AF1509 TR:O28763 (EMBL:AE000998) (262 aa) fasta scores: E(): 2.5e-11, 28.7% id in 272 aa, and to Deinococcus radiodurans conserved hypothetical protein DR1823 TR:Q9RTE2 (EMBL:AE002022) (253 aa) fasta scores: E(): 3.6e-07, 29.5% id in 207 aa
genbank 16123789 NP_407102.1 275 4067228 4068055
204370 hypothetical YPO3648 putative 2-hydroxy-3-oxopropionate reductase
Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GarR or B3125 SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 1e-24, 31.4% id in 283 aa, and to Bacillus subtilis hypothetical 30.7 kDa protein in mcpC-kinA intergenic region YkwC SW:YKWC_BACSU (O34948) (288 aa) fasta scores: E(): 1.1e-23, 32.1% id in 290 aa
genbank 16123790 NP_407103.1 296 4068120 4069010
204371 hypothetical YPO3649 putative gamma carboxymuconolactone decarboxylase
Similar to Agrobacterium radiobacter gamma carboxymuconolactone decarboxylase PcaC TR:Q9KX42 (EMBL:U32867) (144 aa) fasta scores: E(): 6.3e-17, 41.0% id in 117 aa, and to Pseudomonas aeruginosa gamma-carboxymuconolactone decarboxylase Pcac or Pa0232 TR:AAG03621 (EMBL:AE004461) (133 aa) fasta scores: E(): 3.9e-19, 43.6% id in 117 aa
genbank 16123791 NP_407104.1 131 4069188 4069583
204372 hypothetical YPO3650 putative metabolite transport protein
Similar to Escherichia coli proline/betaine transporter ProP SW:PROP_ECOLI (P30848) (500 aa) fasta scores: E(): 5.9e-26, 27.4% id in 449 aa
genbank 16123792 NP_407105.1 454 4069737 4071101
204373 hypothetical YPO3651 putative GntR-family transcriptional regulatory protein
Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SC9A4.30 TR:CAC01657 (EMBL:AL391072) (224 aa) fasta scores: E(): 8.8e-11, 31.8% id in 176 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA0797 TR:AAG04186 (EMBL:AE004515) (240 aa) fasta scores: E(): 1.1e-10, 29.6% id in 216 aa
genbank 16123793 NP_407106.1 220 4071191 4071853
204374 hypothetical YPO3652 hypothetical protein
no significant database hits
genbank 16123794 NP_407107.1 158 4071919 4072395
204375 hypothetical YPO3653 putative colicin immunity protein
Similar to the C-terminal region of Escherichia coli colicin D immunity protein Cdi SW:IMMD_ECOLI (P11899) (87 aa) fasta scores: E(): 0.86, 38.7% id in 31 aa
genbank 16123795 NP_407108.1 39 4072626 4072745
204376 fiS hypothetical YPO3654 DNA-binding protein Fis
Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
genbank 16123796 NP_407109.1 98 4073149 4073445
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204377 hypothetical YPO3655 hypothetical protein
Similar to Escherichia coli hypothetical protein YhdG SW:YHDG_ECOLI (P25717) (321 aa) fasta scores: E(): 0, 87.9% id in 321 aa, and to Serratia marcescens YhdG homolog TR:O52532 (EMBL:AF040378) (334 aa) fasta scores: E(): 0, 92.2% id in 321 aa
genbank 16123797 NP_407110.1 321 4073470 4074435
204378 prmA hypothetical YPO3656 ribosomal protein L11 methyltransferase
Methylates ribosomal protein L11
genbank 16123798 NP_407111.1 293 4075024 4075905
204379 panF hypothetical YPO3657 sodium/panthothenate symporter
mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
genbank 16123799 NP_407112.1 484 4075981 4077435
204380 hypothetical YPO3657a hypothetical protein
Similar to Escherichia coli hypothetical 9.1 kDa protein in accC-panF intergenic region YhdT SW:YHDT_ECOLI (P45566) (80 aa) fasta scores: E(): 1.1e-20, 68.4% id in 79 aa, and to Haemophilus influenzae hypothetical protein Hi0974.1 SW:YHDT_HAEIN (P46455) (85 aa) fasta scores: E(): 1.2e-12, 47.4% id in 78 aa
genbank 16123800 NP_407113.1 80 4077425 4077667
204381 accC hypothetical YPO3658 acetyl-CoA carboxylase
Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism
genbank 16123801 NP_407114.1 449 4079025 4080374
204382 accB hypothetical YPO3659 acetyl-CoA carboxylase
Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism
genbank 16123802 NP_407115.1 154 4080386 4080850
204383 aroQ hypothetical YPO3660 3-dehydroquinate dehydratase
catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
genbank 16123803 NP_407116.1 150 4081008 4081460
204384 hypothetical YPO3661 hypothetical protein
Similar to Escherichia coli from bases 2030342 to 2040230 TR:P76343 (EMBL:AE000288) (211 aa) fasta scores: E(): 0, 69.0% id in 203 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4691 TR:AAG08077 (EMBL:AE004883) (202 aa) fasta scores: E(): 3e-24, 41.8% id in 196 aa
genbank 16123804 NP_407117.1 206 4081723 4082343
204385 hypothetical YPO3662 hypothetical protein
Similar to Escherichia coli hypothetical protein B1971 TR:P76342 (EMBL:AE000288) (334 aa) fasta scores: E(): 0, 75.4% id in 334 aa, and to Pasteurella multocida hypothetical protein PM0537 TR:AAK02621 (EMBL:AE006089) (343 aa) fasta scores: E(): 0, 64.3% id in 333 aa
genbank 16123805 NP_407118.1 366 4082343 4083443
204386 hypothetical YPO3663 probable zinc-binding dehydrogenase
Similar to Escherichia coli protein YhdH SW:YHDH_ECOLI (P26646) (324 aa) fasta scores: E(): 0, 74.4% id in 324 aa, and to Vibrio cholerae zinc-binding alcohol dehydrogenase Vc0026 TR:Q9KVW2 (EMBL:AE004094) (326 aa) fasta scores: E(): 0, 63.2% id in 323 aa
genbank 16123806 NP_407119.1 325 4083666 4084643
204387 hypothetical YPO3664 hypothetical protein
Similar to Escherichia coli hypothetical 73.3 kDa protein in mreB-accB intergenic region YhdA SW:YHDA_ECOLI (P13518) (646 aa) fasta scores: E(): 0, 50.7% id in 641 aa, and to Vibrio cholerae MshA biogenesis protein Vc0398 TR:Q9KUW1 (EMBL:AE004128) (673 aa) fasta scores: E(): 0, 36.1% id in 646 aa
genbank 16123807 NP_407120.1 638 4085044 4086960
204388 mreB hypothetical YPO3665 rod shape-determining protein MreB
Similar to Escherichia coli rod shape-determining protein MreB or EnvB or RodY SW:MREB_ECOLI (P13519) (347 aa) fasta scores: E(): 0, 99.1% id in 347 aa, and to Vibrio cholerae MreB or Vc0415 TR:Q9ZA92 (EMBL:AF079234) (347 aa) fasta scores: E(): 0, 90.2% id in 347 aa
genbank 16123808 NP_407121.1 347 4087297 4088340
204389 mreC hypothetical YPO3666 rod shape-determining protein MreC
Similar to Escherichia coli rod shape-determining protein MreC SW:MREC_ECOLI (P16926) (367 aa) fasta scores: E(): 0, 77.9% id in 335 aa, and to Haemophilus influenzae rod shape-determining protein MreC or Hi0038 SW:MREC_HAEIN (P44475) (351 aa) fasta scores: E(): 0, 51.2% id in 295 aa
genbank 16123809 NP_407122.1 331 4088544 4089539
204390 mreD hypothetical YPO3667 rod shape-determining protein MreD
Similar to Escherichia coli rod shape-determining protein MreD SW:MRED_ECOLI (P16927) (162 aa) fasta scores: E(): 0, 76.1% id in 159 aa, and to Vibrio cholerae rod shape-determining protein MreD Vc0417 TR:Q9KUU8 (EMBL:AE004129) (162 aa) fasta scores: E(): 0, 55.5% id in 155 aa
genbank 16123810 NP_407123.1 162 4089536 4090024
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204391 maf hypothetical YPO3668 Maf-like protein
overexpression in Bacillus subtilis inhibits septation in the dividing cell
genbank 16123811 NP_407124.1 197 4090038 4090631
204392 cafA hypothetical YPO3669 ribonuclease G
Similar to Escherichia coli ribonuclease G CafA or Rng SW:RNG_ECOLI (P25537) (488 aa) fasta scores: E(): 0, 90.2% id in 488 aa, and to Vibrio cholerae cytoplasmic axial filament protein Vc0419 TR:Q9KUU6 (EMBL:AE004129) (489 aa) fasta scores: E(): 0, 79.8% id in 489 aa
genbank 16123812 NP_407125.1 489 4090621 4092090
204393 hypothetical YPO3670 hypothetical protein
Similar to Vibrio cholerae hypothetical protein Vc0420 TR:Q9KUU5 (EMBL:AE004129) (1291 aa) fasta scores: E(): 0, 29.3% id in 1341 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4476 TR:AAG07864 (EMBL:AE004861) (1276 aa) fasta scores: E(): 9.1e-32, 23.7% id in 1335 aa
genbank 16123813 NP_407126.1 1307 4092184 4096107
204394 hypothetical YPO3671 putative carbon-nitrogen hydrolase
Similar to Mus musculus nitrilase 1 nit1 TR:Q9R1N4 (EMBL:AF069988) (323 aa) fasta scores: E(): 0, 38.4% id in 284 aa, and to Vibrio cholerae hypothetical protein Vc0421 vc0421 TR:Q9KUU4 (EMBL:AE004129) (275 aa) fasta scores: E(): 0, 48.1% id in 270 aa
genbank 16123814 NP_407127.1 289 4096104 4096973
204395 tldD hypothetical YPO3672 putative modulator of DNA gyrase
Similar to Escherichia coli TldD protein, modulator of interaction between LetD protein and DNA gyrase SW:TLDD_ECOLI (P46473) (481 aa) fasta scores: E(): 0, 84.4% id in 481 aa, and to Vibrio cholerae TldD protein VC0422 TR:Q9KUU3 (EMBL:AE004129) (481 aa) fasta scores: E(): 0, 69.8% id in 480 aa
genbank 16123815 NP_407128.1 481 4096985 4098430
204396 hypothetical YPO3673 putative insecticidal toxin
Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0, 52.2% id in 718 aa. Similar to YPO3674 (79.1% identity in 949 aa overlap), YPO2312 (52.1% identity in 729 aa overlap) and YPO2380 (52.2% identity in 696 aa overlap). Note the differing C-terminus of the product of this CDS
genbank 16123816 NP_407129.1 952 4098633 4101491
204397 hypothetical YPO3674 putative insecticidal toxin
Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0, 53.7% id in 680 aa, to Serratia entomophila SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0, 53.3% id in 685 aa. Similar to YPO3673 (79.1% identity in 949 aa overlap), YPO2312 (50.3% identity in 773 aa overlap) and YPO2380 (51.4% identity in 699 aa overlap). Note the differing C-terminus of the product of this CDS
genbank 16123817 NP_407130.1 1011 4101516 4104551
204398 hypothetical YPO3675 hypothetical protein
no significant database matches
genbank 16123818 NP_407131.1 119 4104548 4104907
204399 hypothetical YPO3676 putative phage-related protein
Similar to Bacteriophage P27 hypothetical 14.1 kDa protein TR:Q9MBZ3 (EMBL:AJ249351) (125 aa) fasta scores: E(): 1.7e-26, 52.5% id in 120 aa, and to bacteriophage PS3 Gp19 TR:O80284 (EMBL:AJ011579) (132 aa) fasta scores: E(): 3.3e-19, 46.0% id in 137 aa
genbank 16123819 NP_407132.1 133 4104904 4105305
204400 hypothetical YPO3677 putative phage-related protein
Similar to bacteriophage PS3 gp13 13 TR:O80283 (EMBL:AJ011579) (105 aa) fasta scores: E(): 3.2e-14, 41.7% id in 84 aa
genbank 16123820 NP_407133.1 100 4105318 4105620
204401 hypothetical YPO3678 insecticidal toxin complex
Similar to Photorhabdus luminescens insecticidal toxin complex protein TcaC TR:O85153 (EMBL:AF046867) (1485 aa) fasta scores: E(): 0, 48.6% id in 1517 aa, and to Serratia entomophila SepB TR:AAG09643 (EMBL:AF135182) (1428 aa) fasta scores: E(): 0, 44.5% id in 1515 aa. Contains a 2x repeat: RDPDLS between codons 480..491.
genbank 16123821 NP_407134.1 1496 4105754 4110244
204402 hypothetical YPO3681 putative insecticial toxin
Similar in its central region to Photorhabdus luminescens insecticidal toxin complex protein TcaA TR:O85151 (EMBL:AF046867) (1095 aa) fasta scores: E(): 2.1e-19, 35.2% id in 401 aa. Contains colied-coil domain at approx. residues 683..710
genbank 16123822 NP_407135.1 833 4113934 4116435
204403 hypothetical YPO3682 putative lysR-family transcriptional regulatory protein
Similar to Erwinia amylovora RlsA protein TR:O54509 (EMBL:AJ131559) (266 aa) fasta scores: E(): 6.3e-06, 28.5% id in 228 aa, and to Escherichia coli hypothetical transcriptional regulator YgfI SW:YGFI_ECOLI (P52044) (303 aa) fasta scores: E(): 2.8e-06, 27.8% id in 198 aa
genbank 16123823 NP_407136.1 288 4116671 4117537
204404 hypothetical YPO3683 probable lysR-family transcriptional regulatory protein
Similar to Escherichia coli hypothetical transcriptional regulator YhcS SW:YHCS_ECOLI (P45691) (309 aa) fasta scores: E(): 0, 80.7% id in 301 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA2877 TR:AAG06265 (EMBL:AE004714) (297 aa) fasta scores: E(): 4.1e-27, 30.4% id in 296 aa
genbank 16123824 NP_407137.1 303 4117798 4118709
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204405 hypothetical YPO3684 hypothetical protein
Similar to Escherichia coli hypothetical 10.3 kDa protein in argR-cafA intergenic region YhcR SW:YHCR_ECOLI (P46478) (90 aa) fasta scores: E(): 1.4e-24, 81.8% id in 66 aa, and to Escherichia coli hypothetical 8.9 kDa protein in slyA-sodC intergenic region YdhI SW:YDHI_ECOLI (P76184) (78 aa) fasta scores: E(): 0.017, 34.4% id in 61 aa
genbank 16123825 NP_407138.1 67 4119012 4119215
204406 hypothetical YPO3685 putative HlyD family secretion protein
Similar to Escherichia coli hypothetical protein YhcQ SW:YHCQ_ECOLI (P46482) (310 aa) fasta scores: E(): 0, 72.3% id in 311 aa, and to Escherichia coli fusaric acid resistance protein FusE TR:P76893 (EMBL:D90807) (329 aa) fasta scores: E(): 0, 38.5% id in 288 aa
genbank 16123826 NP_407139.1 311 4119223 4120158
204407 hypothetical YPO3686 hypothetical protein
Similar to Escherichia coli hypothetical 73.6 kDa protein in argR-cafA intergenic region YhcP SW:YHCP_ECOLI (P46481) (655 aa) fasta scores: E(): 0, 64.6% id in 642 aa
genbank 16123827 NP_407140.1 651 4120160 4122115
204408 hypothetical YPO3689 putative ribonuclease
Similar to Bacillus amyloliquefaciens ribonuclease precursor SW:RNBR_BACAM (P00648) (157 aa) fasta scores: E(): 1.9e-23, 52.4% id in 124 aa, and to Bacillus circulans ribonuclease SW:RN_BACCI (P35078) (110 aa) fasta scores: E(): 2e-22, 62.0% id in 100 aa
genbank 16123828 NP_407141.1 152 4124060 4124518
204409 hypothetical YPO3690 putative ribonuclease inhibitor
Similar to Bacillus amyloliquefaciens Barstar SW:BARS_BACAM (P11540) (89 aa) fasta scores: E(): 0.00075, 33.3% id in 60 aa, and to Escherichia coli hypothetical protein YhcO SW:YHCO_ECOLI (P46480) (90 aa) fasta scores: E(): 9.4e-16, 53.0% id in 83 aa
genbank 16123829 NP_407142.1 93 4124523 4124804
204410 hypothetical YPO3691 hypothetical protein
Similar to Escherichia coli hypothetical protein YjgA or X96 SW:YJGA_ECOLI (P26650) (183 aa) fasta scores: E(): 0, 78.0% id in 182 aa, and to Haemophilus influenzae hypothetical protein HI1151 SW:YJGA_HAEIN (P45076) (178 aa) fasta scores: E(): 5.9e-31, 56.6% id in 175 aa
genbank 16123830 NP_407143.1 182 4124916 4125464
204411 pmbA hypothetical YPO3692 Putative modulator of DNA gyrase
Similar to Escherichia coli PmbA protein or TldE SW:PMBA_ECOLI (P24231) (450 aa) fasta scores: E(): 0, 82.7% id in 446 aa, and to Vibrio cholerae PmbA protein Vc2535 TR:Q9KP44 (EMBL:AE004322) (447 aa) fasta scores: E(): 0, 66.9% id in 447 aa
genbank 16123831 NP_407144.1 446 4125645 4126985
204412 hypothetical YPO3693 hypothetical protein
Weakly similar to Haemophilus influenzae methionine aminopeptidase Map or HI1722 SW:AMPM_HAEIN (P44421) (268 aa) fasta scores: E(): 2.1, 26.6% id in 199 aa, and to the C-terminal region of Mycobacterium tuberculosis prolyl-tRNA synthetase ProS or Rv2845c or Mtcy24a1.12 SW:SYP_MYCTU (O05814) (582 aa) fasta scores: E(): 1.9, 27.3% id in 128 aa
genbank 16123832 NP_407145.1 212 4127240 4127878
204413 hypothetical YPO3694 putative cytochrome
Similar to Escherichia coli soluble cytochrome B562 precursor CybC SW:C562_ECOLI (P00192) (128 aa) fasta scores: E(): 8.3e-21, 51.6% id in 128 aa, and to the previously sequenced Yersinia pestis cytochrome C CybC TR:Q9X6B1 (EMBL:AF135170) (127 aa) fasta scores: E(): 6.3e-15, 46.1% id in 115 aa
genbank 16123833 NP_407146.1 128 4128086 4128472
204414 rnk hypothetical YPO3695 nucleoside diphosphate kinase regulator
Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation
genbank 16123834 NP_407147.1 136 4128696 4129106
204415 treC hypothetical YPO3696 putative trehalose-6-phosphate hydrolase
Similar to Escherichia coli trehalose-6-phosphate hydrolase TreC or OlgH SW:TREC_ECOLI (P28904) (551 aa) fasta scores: E(): 0, 74.0% id in 547 aa, and to Vibrio cholerae trehalose-6-phosphate hydrolase Vc0911 TR:Q9KTJ1 (EMBL:AE004175) (562 aa) fasta scores: E(): 0, 60.9% id in 550 aa
genbank 16123835 NP_407148.1 555 4129459 4131126
204416 treB hypothetical YPO3697 PTS system, trehalose-specific IIBC component
Similar to Escherichia coli PTS system, trehalose-specific IIBC component TreB SW:PTTB_ECOLI (P36672) (473 aa) fasta scores: E(): 0, 80.5% id in 471 aa, and to Vibrio cholerae PTS system, trehalose-specific IIBC component Vc0910 TR:Q9KTJ2 (EMBL:AE004175) (478 aa) fasta scores: E(): 0, 70.0% id in 474 aa
genbank 16123836 NP_407149.1 483 4131221 4132672
204417 treR hypothetical YPO3698 trehalose repressor
regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon
genbank 16123837 NP_407150.1 317 4133047 4134000
204418 hypothetical YPO3699 hypothetical protein
no significant database matches
genbank 16123838 NP_407151.1 158 4134234 4134710
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204419 hypothetical YPO3700 transposase/IS protein
Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein, IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0, 47.4% id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0, 99.6% id in 260 aa.
genbank 16123839 NP_407152.1 260 4134826 4135608
204420 hypothetical YPO3701 transposase for insertion sequence IS100
Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27, 33.1% id in 329 aa. Identical to the previously sequenced Yersinia pestis, Yersinia pseudotuberculosis, and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0, 100.0% id in 340 aa
genbank 16123840 NP_407153.1 340 4135605 4136627
204421 hypothetical YPO3702 truncated IS1661 DNA-binding protein
This CDS has been disrupted by the insertion of an IS100 element. This truncated CDS shows similarities to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 37.3% identity in 102 aa overlap.
genbank 16123841 NP_407154.1 104 4136714 4137028
204422 hypothetical YPO3703 IS1661 transposase
Similar to Escherichia coli insertion sequence IS1397 transposase, OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0, 53.0% id in 234 aa
genbank 16123842 NP_407155.1 261 4137082 4137867
204423 hypothetical YPO3705 hypothetical protein
Similar to Vibrio cholerae hypothetical protein VCA0109 TR:Q9KN56 (EMBL:AE004353) (145 aa) fasta scores: E(): 4.2e-13, 36.7% id in 128 aa, and to Pseudomonas aeruginosa hypothetical protein PA1659 TR:AAG05048 (EMBL:AE004593) (135 aa) fasta scores: E(): 5.6e-08, 33.9% id in 124 aa
genbank 16123843 NP_407156.1 146 4138983 4139423
204424 hypothetical YPO3706 hypothetical protein
Similar to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0, 77.0% id in 473 aa, and to Pseudomonas aeruginosa hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0, 66.7% id in 474 aa
genbank 16123844 NP_407157.1 493 4139430 4140911
204425 hypothetical YPO3707 hypothetical protein
Similar to Escherichia coli hypothetical protein 498 TR:O52670 (EMBL:AF044503) (166 aa) fasta scores: E(): 0, 62.0% id in 166 aa, and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 0, 61.3% id in 160 aa
genbank 16123845 NP_407158.1 165 4140979 4141476
204426 hypothetical YPO3708 hypothetical protein
Similar to Escherichia coli hypothetical protein TR:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 0, 80.2% id in 172 aa, and to Vibrio cholerae secreted hydrophilic protein Hcp or HcpA or VCA0017 or VC1415 TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 0, 77.3% id in 172 aa
genbank 16123846 NP_407159.1 172 4142000 4142518
204427 hypothetical YPO3709 hypothetical protein
no significant database hits
genbank 16123847 NP_407160.1 112 4142670 4143008
204428 malM hypothetical YPO3710 maltose operon periplasmic protein
Similar to Escherichia coli maltose operon periplasmic protein precursor MalM or MolA SW:MALM_ECOLI (P03841) (306 aa) fasta scores: E(): 0, 51.9% id in 308 aa, and to Salmonella typhimurium maltose operon periplasmic protein precursor MalM SW:MALM_SALTY (P26478) (305 aa) fasta scores: E(): 0, 51.1% id in 307 aa
genbank 16123848 NP_407161.1 309 4143419 4144348
204429 lamB hypothetical YPO3711 maltoporin precursor
porin involved in the transport of maltose and maltodextrins
genbank 16123849 NP_407162.1 423 4144571 4145842
204430 malK hypothetical YPO3712 maltose/maltodextrin transport ATP-binding protein
Similar to Escherichia coli maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0, 84.6% id in 371 aa, and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_SALTY (P19566) (369 aa) fasta scores: E(): 0, 84.3% id in 369 aa. Similar to YPO0857 (52.7% identity in 357 aa overlap), YPO3793 (47.5% identity in 358 aa overlap), YPO1896 (59.6% identity in 275 aa overlap), YPO0609 (47.7% identity in 369 aa overlap), YPO3469 ( 49.9% identity in 357 aa overlap)
genbank 16123850 NP_407163.1 369 4145913 4147022
204431 hypothetical YPO3713 hypothetical protein
no significant database hits
genbank 16123851 NP_407164.1 78 4147026 4147262
204432 malE hypothetical YPO3714 periplasmic maltose-binding protein
functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis
genbank 16123852 NP_407165.1 403 4147824 4149035
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
204433 malF hypothetical YPO3715 maltose transport system permease protein MalF
Similar to Escherichia coli maltose transport system permease protein MalF SW:MALF_ECOLI (P02916) (514 aa) fasta scores: E(): 0, 75.4% id in 513 aa, and to Enterobacter aerogenes maltose transport system permease protein MalF SW:MALF_ENTAE (P18812) (514 aa) fasta scores: E(): 0, 75.2% id in 513 aa
genbank 16123853 NP_407166.1 525 4149222 4150799


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