Reference SNP(refSNP) Cluster Report: rs9284430

Reference SNP(refSNP) Cluster Report: rs9284430

refSNP ID: rs9284430
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	119/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_173804.3:c.*402G>C
NT_011109.15:g.28006337C>G

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss13474217 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9284430 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss13474217	WI_SSAHASNP\|chr19.NT_011109.15_28006337	fwd/T	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	10/31/03	11/10/03	119	Genomic	unknown
ss14695813	BCM_SSAHASNP\|chr19.NT_011109.15_28006337	fwd/T	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	11/10/03	11/22/03	119	Genomic	unknown
ss14784636	SC_SNP\|NT_011109.15_28006337	fwd/T	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	11/12/03	11/22/03	119	Genomic	unknown
ss17613132	CSHL-HAPMAP\|CSHL-HuCC-200402.chr19.NT_011109.15_28006337	fwd/T	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	02/19/04	03/04/04	120	Genomic	unknown
ss21520982	SSAHASNP\|WGSA-200403-chr19.chr19.NT_011109.15_28006337	fwd/T	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	03/20/04	03/20/04	121	Genomic	unknown
ss77485616	HGSV\|Cor12156_SNV_20070510.chr19_60429959	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	10/09/07	10/13/07	129	Genomic	unknown
ss78349818	HGSV\|Cor12878_SNV_20070510.chr19_60429959	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	10/17/07	10/19/07	129	Genomic	unknown
ss79882122	HGSV\|Cor18507_SNV_20070510.chr19_60429959	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	11/23/07	11/24/07	130	Genomic	unknown
ss82938377	HGSV\|Cor18555_SNV_20070510.chr19_60429959	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	11/27/07	12/03/07	130	Genomic	unknown
ss83252703	HGSV\|Cor18956_SNV_20070510.chr19_60429959	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	11/30/07	12/04/07	130	Genomic	unknown
ss85377830	HGSV\|Cor19129_SNV_20070510.chr19_60429959	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	12/06/07	12/09/07	130	Genomic	unknown
ss85509878	HGSV\|Cor18517_SNV_20070510.chr19_60429959	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	12/06/07	12/09/07	130	Genomic	unknown
ss91014155	BCMHGSC_JDW\|JWB-1184487	fwd/	C/G	ctgtcattaaccgcgatggtttatcacaat	atgaccctccccgaggcctctcctacggta	02/26/08	03/01/08	129	Genomic	unknown

Fasta sequence (Legend)

 tgagatagaa tcaccctggg tttagggtgg gccctaaatc caatgacctg tgtccctaga
 aggatgcgga cacagaggga ggctgccagt tgaagacagt cacatgaaga cggagagaca
 cagccacagg ccgatggaag ccagggattc ccgggagcct ccagaagccg agagggcaag
 gacggattct tccctggagc ctcaagaggg accatgggcc ggaaaacacc cggattttgg
 actttgggtc tccagaactg caggagagtc cattcatctt gtttcaaagc atctggcttg
 gggtaatttg tgacagcagc ctcaggaaac taacacaAAG ACCAAACAGT CCTCTTGGCT
 CAGTTCTGCA CAATCCTCAC TTTATCCCCC CGAATCCCCC CACCAGAGGG CCATGGAGGG
 TCCCACTGGG CACCAGGCCT GGTCCATGGG GAGCGACAAA GAACCTTCTG CTGTCATTAA
 CCGCGATGGT TTATCACAAT
 S
 ATGACCCTCC CCGAGGCCTC TCCTACGGTA ACAGCAACAT CTACGGTTCC ACACCCACAG
 GGAAAACGGA TTCAGAGCAG CAGCAGGGGG CGGGCAGGCT GTGGGGCCGA CAGTGAACAT
 GGAGGCAGGC TGGTGGCTGG GAGGGCTCCA TGTGGGCCTG GCTGAGGAGC CAGGGATCTG
 GAGTCAGAAC CGGGGGAAGG

GeneView

GeneView via analysis of contig annotation: TMEM86B transmembrane protein 86B

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_011109->NM_173804

function

HuRef

NW_001838498->NM_173804

function

Celera

NW_927284->NM_173804

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	mRNA pos	Function


reference	NT_011109->NM_173804->	28006337	reverse	1606	3' UTR

HuRef	NW_001838498->NM_173804->	204387	forward	1606	3' UTR

Celera	NW_927284->NM_173804->	5086967	reverse	1606	3' UTR

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs9284430 maps exactly once on NCBI human chromosome 19

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
19	NW_001838498.2	204387	52061519	minus	C	alt_assembly_8	HuRef	HuRef	view	500
19	NW_927284.1	5086967	52779683	plus	G	alt_assembly_1	Celera	Celera	view	500
19	NT_011109.15	28006337	60429959	plus	C	ref_assembly	reference	reference	view	500

NCBI Resource Links

Submitter-Referenced
GenBank
NT_011109

dbSNP Blast Analysis
GenBank HTGS Finished:
AC010327.8 AC116342.2 NC_000019.8

UniGene Cluster ID
135215

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .