Table of contents for Brock biology of microorganisms / Michael T. Madigan, John M. Martinko.

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 I	CONTENTS
	UNIT I PRINCIPLES OF MICROBIOLOGY
	CHAPTER 1 MICROORGANISMS AND MICROBIOLOGY 
 I	INTRODUCTION TO MICROBIOLOGY	1
	1.1	Microbiology	
	1.2	Microorganisms as Cells	
	1.3	Microorganisms and Their Natural Environments	
	1.4	The Impact of Microorganisms on Humans	
	
	II	PATHWAYS OF DISCOVERY IN MICROBIOLOGY	9
	1.5	The Historical Roots of Microbiology: van Leeuwenhoek and Cohn	
	1.6	Pasteur, Koch, and Pure Cultures
	1.7	Microbial Diversity and the Rise of General Microbiology	
1.8 The Modern Era of Microbiology
 CHAPTER 2 AN OVERVIEW OF MICROBIAL LIFE 
 
 I	CELL STRUCTURE AND EVOLUTIONARY HISTORY	22
	2.1	Elements of Cell and Viral Structure	
	2.2	Arrangement of DNA in Microbial Cells	
	2.3	The Tree of Life	
	
	II	MICROBIAL DIVERSITY	27
	2.4	Physiological Diversity of Microorganisms	
	2.5	Prokaryotic Diversity	
2.6 Eukaryotic Microorganisms
CHAPTER 3 MACROMOLECULES
 I		CHEMICAL BONDING AND WATER IN LIVING SYSTEMS	39
	3.1	Strong and Weak Chemical Bonds	
	3.2	An Overview of Macromolecules and Water as the Solvent of Life	
	
	II	NONINFORMATIONAL MACROMOLECULES	43
	3.3	Polysaccharides	
	3.4	Lipids	
	
	III	INFORMATIONAL MACROMOLECULES
	3.5	Nucleic Acids	
	3.6	Amino Acids and the Peptide Bond	
	3.7	Proteins: Primary and Secondary Structure	
3.8 Proteins: Higher Order Structure and Denaturation
CHAPTER 4 CELL STRUCTURE/FUNCTION
I	I	MICROSCOPY AND CELL MORPHOLOGY	
	4.1	Light Microscopy	
	4.2	Three-Dimensional Imaging: Interference Contrast,
		Atomic Force, and Confocal Scanning Laser Microscopy	
	4.3	Electron Microscopy	
	4.4	Cell Morphology and the Significance of Being Small	
 
 II	CELL MEMBRANES AND WALLS	
	4.5	Cytoplasmic Membrane: Structure	
	4.6	Cytoplasmic Membrane: Function	
	4.7	Membrane Transport Systems	
	4.8	The Cell Wall of Prokaryotes: Peptidoglycan and Related Molecules	
	4.9	The Outer Membrane of Gram-Negative Bacteria	
	
	III	SURFACE STRUCTURES AND INCLUSIONS OF PROKARYOTES	
4.10 Bacterial Cell Surface Structures
4.11 Cell Inclusions	
	4.12	Gas Vesicles	
4.13 Endospores
IV	MICROBIAL LOCOMOTION			
	4.14	Flagella and Motility	
	4.15	Gliding Motility	
4.16 Cell Motion as a Behavioral Response: Chemotaxis and Phototaxis
CHAPTER 5 NUTRITION, LABORATORY CULTURE, AND METABOLISM OF MICROORGANISMS
I	I	NUTRITION AND CULTURE OF MICROORGANISMS	
	5.1	Microbial Nutrition	
	5.2	Culture Media	
	5.3	Laboratory Culture of Microorganisms	
 
 II	ENERGETICS AND ENZYMES	
	5.4	Bioenergetics	
	5.5	Catalysis and Enzymes	
	
	III	OXIDATION-REDUCTION AND ENERGY-RICH COMPOUNDS	
	5.6	Oxidation-Reduction	
	5.7	NAD as a Redox Electron Carrier	
	5.8	Energy-Rich Compounds and Energy Storage	
	
	IV	MAJOR CATABOLIC PATHWAYS, ELECTRON TRANSPORT,
		 AND THE PROTON MOTIVE FORCE	
	5.9	Energy Conservation: Options	
	5.10	Glycolysis as an Example of Fermentation	
	5.11	Respiration and Membrane-Associated Electron Carriers	
	5.12	Energy Conservation from the Proton Motive Force	
	
	V	CARBON FLOW IN RESPIRATION AND CATABOLIC ALTERNATIVES
	5.13	Carbon Flow in Respiration: The Citric Acid Cycle	
	5.14	Catabolic Alternatives
 
 VI	BIOSYNTHESIS	
	5.15	Biosynthesis of Sugars and Polysaccharides	
5.16 Biosynthesis of Amino Acids and Nucleotides
5.17 Biosynthesis of Fatty Acids and Lipids
CHAPTER 6 MICROBIAL GROWTH
	
	I	BACTERIAL CELL DIVISION
	6.1	Cell Growth and Binary Fission
	6.2	Fts Proteins, the Cell Division Plane, and Cell Morphology
	6.3	Peptidoglycan Synthesis and Cell Division
	
	II	GROWTH OF BACTERIAL POPULATIONS
6.4 Growth Terminology and the Concept of Exponential Growth
6.5 The Mathematics of Bacterial Growth
6.6 The Growth Cycle
III	MEASURING MICROBIAL GROWTH
	6.7	Direct Measurements of Microbial Growth: Total and Viable Counts
	6.8	Indirect Measurements of Microbial Growth: Turbidity
	6.9	Continuous Culture: The Chemostat
	
	IV	ENVIRONMENTAL EFFECTS ON MICROBIAL GROWTH: TEMPERATURE
	6.10	Effect of Temperature on Growth
	6.11	Microbial Growth at Cold Temperatures
	6.12	Microbial Growth at High Temperatures
 
 V	ENVIRONMENTAL EFFECTS ON MICROBIAL GROWTH: pH,	OSMOLARITY, AND OXYGEN
	6.13	Microbial Growth at Low or High pH
	6.14	Osmotic Effects on Microbial Growth
	6.15	Oxygen and Microbial Growth	
6.16 Toxic Forms of Oxygen
I	
	CHAPTER 7 ESSENTIALS OF MOLECULAR BIOLOGY
	I	GENES AND GENE EXPRESSION
	7.1	Macromolecules and Genetic Information
	II	
	II	DNA STRUCTURE
	7.2	DNA Structure: The Double Helix
	7.3	DNA Structure: Supercoiling
	7.4	Chromosomes and Other Genetic Elements
	III	
	III	DNA REPLICATION
	7.5	DNA Replication: Templates and Primers
	7.6	DNA Replication: The Replication Fork
	
	IV 	TOOLS FOR MANIPULATING DNA
	7.7	Restriction Enzymes and Hybridization
	7.8	Sequencing and Synthesizing DNA
	7.9	Amplifying DNA: The Polymerase Chain Reaction
	V	
	V	RNA SYNTHESIS: TRANSCRIPTION
	7.10	Overview of Transcription
7.11 Diversity of Sigma Factors, Consensus 
Sequences, and Other RNA Polymerases
	7.12	Transcription Terminators
	7.13	The Unit of Transcription
	VI	
	VI	PROTEIN SYNTHESIS
	7.14	The Genetic Code
	7.15	Transfer RNA
	7.16	Translation: The Process of Protein Synthesis
7.17 Folding and Secreting Proteins
	CHAPTER 8 METABOLIC REGULATION
	I	OVERVIEW OF REGULATION
	8.1	Major Modes of Regulation
	II	
	II	REGULATION OF ENZYME ACTIVITY
	8.2	Inhibiting Enzyme Activity
	8.3	Covalent Modification of Enzymes
	
 III	DNA-BINDING PROTEINS AND REGULATION OF TRANSCRIPTION BY NEGATIVE AND POSITIVE CONTROL	
	8.4	DNA Binding Proteins
	8.5	Negative Control of Transcription: Repression and Induction
	8.6	Positive Control of Transcription
	
	IV	GLOBAL REGULTORY MECHANISMS
	8.7	Global Control and the lac Operon
8.8 The Stringent Response
8.9 Other Global Control Networks
8.10 Quorum Sensing
	IV	
	V	OTHER MECHANISMS OF REGULATION
	8.11	Attenuation
	8.12	Signal Transduction and Two-Component Regulatory System
8.13 Regulation of Chemotaxis
8.14 RNA Regulation and Riboswitches
	CHAPTER 9 ESSENTIALS OF VIROLOGY
	I	VIRUS AND VIRION
	9.1	General Properties of Viruses
9.2 Nature of the Virion
	
	II	GROWTH AND QUANTIFICATION
	9.3	The Virus Host
9.4 Quantification of Viruses
	
	III	VIRAL REPLICATION
	9.5	General Features of Virus Replication
	9.6	Virus Multiplication: Attachment and Penetration
	9.7	Virus Multiplication: Production of Viral Nucleic Acid and Protein
	IV	
	IV	VIRAL DIVERSITY
	9.8	Overview of Bacterial Viruses
	9.9	Virulent Bacteriophages and T4
	9.10	Temperate Bacteriophages
	9.11	Bacteriophage Lambda
	9.12	Overview of Animal Viruses
9.13 Retroviruses
V	SUBVIRAL PARTICLES
9.14 Viroids and Prions
I	CHAPTER 10 BACTERIAL GENETICS
	I	MUTATION AND RECOMBINATION
	10.1	Mutations and Mutants
	10.2	Molecular Basis of Mutation
	10.3	Mutation Rates
	10.4	Mutagenesis	
	10.5	Mutagenesis and Carcinogenesis: The Ames Test
	10.6	Genetic Recombination
	II	
	II	GENETIC EXCHANGE IN PROKARYOTES
	10.7	Transformation
	10.8	Transduction
	10.9	Plasmids: General Principles
10.10 Types of Plasmids and Their Biological Significance
10.11 Conjugation: Essential Features	
10.12 The Formation of Hfr Strains and Chromosome Mobilization
	10.13	Complementation
	10.14	Transposons and Insertion Sequences
	III	
	III	BACTERIAL GENETICS AND GENE CLONING
	10.15	Essentials of Molecular Cloning
	10.16	Plasmids as Cloning Vectors
	10.17	Bacteriophage Lambda as a Cloning Vector
	10.18	In Vitro and Site-Directed Mutagenesis
	IV	
	IV	THE BACTERIAL CHROMOSOME
10.19 Genetic Map of the Escherichia coli Chromosome
UNIT II EVOLUTIONARY MICROBIOLOGY AND MICROBIAL DIVERSITY
 CHAPTER 11 MICROBIAL EVOLUTION AND SYSTEMATICS
 I	EARLY EARTH, THE ORIGIN OF LIFE,
		AND MICROBIAL DIVERSIFICATION
	11.1	Evolution of Earth and Earliest Life Forms
11.2 Primitive Life: The RNA World and Molecular Coding
11.3 Primitive Life: Energy and Carbon Metabolism
	11.4	Eukaryotes and Organelles: Endosymbiosis
	II	
	II	METHODS FOR DETERMINING EVOLUTIONARY 
		RELATIONSHIPS
	11.5	Evolutionary Chronometers
	11.6	Ribosomal RNA Sequences and Cellular Evolution
	11.7	Signature Sequences, Phylogenetic Probes,
		and Microbial Community Analyses
	
	III	MICROBIAL EVOLUTION
	11.8	Microbial Phylogeny Derived from Ribosomal RNA Sequences
11.9 Characteristics of the Primary Domains of Life
	IV	MICROBIAL TAXONOMY AND ITS RELATIONSHIP TO PHYLOGENY
	11.10	Classical Taxonomy
	11.11	Molecular Taxonomy
	11.12	The Species Concept in Microbiology
11.13 Nomenclature and Bergey's Manual
	CHAPTER 12 PROKARYOTIC DIVERSITY: BACTERIA
 I		THE PHYLOGENY OF BACTERIA
	12.1	Phylogenetic Overview of Bacteria
	II
 II		PHYLUM 1: PROTEOBACTERIA
	12.2	Purple Phototrophic Bacteria
	12.3	The Nitrifying Bacteria
	12.4	Sulfur- and Iron-Oxidizing Bacteria
	12.5	Hydrogen-Oxidizing Bacteria
	12.6	Methanotrophs and Methylotrophs
	12.7	Pseudomonas and the Pseudomonads
	12.8	Acetic Acid Bacteria
	12.9	Free-Living Aerobic Nitrogen-Fixing Bacteria
	12.10	Neisseria, Chromobacterium, and Relatives
	12.11	Enteric Bacteria
	12.12	Vibrio and Photobacterium
	12.13	Rickettsias
	12.14	Spirilla
	12.15	Sheathed Proteobacteria: Sphaerotilus
 and Leptothrix
	12.16	Budding and Prosthecate/Stalked Bacteria
	12.17	Gliding Myxobacteria
	12.18	Sulfate- and Sulfur-Reducing Proteobacteria
	III	
 III		PHYLUM 2 AND 3: GRAM-POSITIVE BACTERIA AND ACTINOBACTERIA
	12.19	Nonsporulating, Low GC, Gram-Positive
Bacteria: Lactic Acid Bacteria and Relatives
	12.20	Endospore-Forming, Low GC, Gram-Positive
Bacteria: Bacillus, Clostridium, and Relatives
	12.21	Cell Wall-Less, Low GC, Gram-Positive
Bacteria: The Mycoplasmas
	12.22	High GC, Gram-Positive Bacteria (Actinobacteria):
Coryneform and Propionic Acid Bacteria
	12.23	Actinobacteria: Mycobacterium
12.24 Filamentous Actinobacteria: Streptomyces and 
	other Actinomycetes
	IV	
 IV		PHYLUM 4: CYANOBACTERIA AND
PROCHLOROPHYTES
	12.25	Cyanobacteria
	12.26	Prochlorophytes and Chloroplasts
	V	
 V		PHYLUM 5: CHLAMYDIA
	12.27	The Chlamydia
	VI	
 VI		PHYLUM 6: PLANCTOMYCES/PIRELLULA
	12.28	Planctomyces: A Phylogenetically Unique
Stalked Bacterium
	VII	PHYLUM 7: THE VERRUCOMICROBIA
	12.29		Verrucomicrobium and Prosthecobacter	
 VIII		PHYLUM 8: THE FLAVOBACTERIA
	12.30	Bacteroides and Flavobacterium
	IX	
 IX		PHYLUM 9: THE CYTOPHAGA GROUP
	12.31	Cytophaga and Relatives	
	X
 X 		PHYLUM 10: GREEN SULFUR BACTERIA	
	12.32	Chlorobium and Other Green Sulfur Bacteria	
	XI
 XI		PHYLUM 11: THE SPIROCHETES
	12.33	Spirochetes
	XII	
 XII		PHYLUM 12: DEINOCOCCI
	12.34	Deinococcus/Thermus
	XIII
 XIII		PHYLUM 13: THE GREEN NONSULFUR BACTERIA	
	12.35	Chloroflexus and Relatives
	XIV
 XIV		PHYLUM 14(16: DEEPLY BRANCHING
 HYPERTHERMOPHILIC BACTERIA
	12.36	Thermotoga and Thermodesulfobacterium	
	12.37	Aquifex, Thermocrinis, and Relatives	
	XV	
	XV		PHYLUM 17 AND 18: NITROSPIRA
 AND DEFERRIBACTER	
12.38 Nitrospira, Deferribacter, and Relatives
	
	CHAPTER 13 PROKARYOTIC DIVERSITY: THE ARCHAEA
	I	PHYLOGENY AND GENERAL METABOLISM
	13.1	Phylogenetic Overview of the Archaea
	13.2	Energy Conservation and Autotrophy in Archaea
	II	
	II	PHYLUM EURYARCHAEOTA
	13.3	Extremely Halophilic Archaea
	13.4	Methane-Producing Archaea: Methanogens
	13.5	Thermoplasmatales: Thermoplasma, Ferroplasma, and Picrophilus
	13.6	Hyperthermophilic Euryarchaeota: Thermococcales and Methanopyrus
	13.7	Hyperthermophilic Euryarchaeota: The Archaeoglobales
	III	
	III	PHYLUM CRENARCHAEOTA
	13.8	Habitats and Energy Metabolism of Crenarchaeotes
	13.9	Hyperthermophiles from Terrestrial Volcanic Habitats:
		Sulfolobales and Thermoproteales
	13.10	Hyperthermophiles from Submarine Volcanic Habitats: Desulfurococcales
	IV	
	IV	PHYLUM NANOARCHAEOTA
	13.11 	Nanoarchaeum
	
	V	EVOLUTION AND LIFE AT HIGH TEMPERATURES
	13.12	Heat Stability of Biomolecules
13.13	Hyperthermophilic Archaea, H2, and Microbial Evolution
CHAPTER 14 EUKARYOTIC CELL BIOLOGY AND EUKARYOTIC MICROORGANISMS
 I	EUKARYOTIC CELL STRUCTURE/FUNCTION	
	14.1	Eukaryotic Cell Structure and the Nucleus	
 14.2 	Respiratory and Fermentative Organelles: The Mitochondrion and the Hydrogenosome
	14.3	Photosynthetic Organelle: The Chloroplast	
	14.4	Endosymbiosis: Relationships of Mitochondria and Chloroplasts to Bacteria
	14.5	Other Organelles and Eukaryotic Cell Structures	
	
	II	EUKARYOTIC GENETICS AND MOLECULAR BIOLOGY
	14.6	Replication of Linear DNA
	14.7	Overview of Eukaryotic Genetics	
14.8 RNA Processing and Ribozymes
	III	EUKARYOTIC MICROBIAL DIVERSITY	
	14.9	Phylogeny of the Eukarya	
14.10 Protozoa	
14.11 Slime Molds	
	14.12	Fungi		
14.13 Algae
	CHAPTER 15 MICROBIAL GENOMICS
 I		GENOMIC CLONING TECHNIQUES	
	15.1	Vectors for Genomic Cloning and Sequencing	
	15.2	Sequencing the Genome	
	15.3	Annotating the Genome
	II	
 II		MICROBIAL GENOMES	
	15.4	Prokaryotic Genomes: Sizes and ORF Contents
	15.5	Prokaryotic Genomes: Bioinformatic Analyses and Gene Distributions
15.6 Eukaryotic Microbial Genomes
 
III	OTHER GENOMES AND THE EVOLUTION OF GENOMES	
	15.7	Genomes of Organelles	
	15.8	Evolution and Gene Families	
	15.9	Genomic Mining	
	IV	
 IV	GENE FUNCTION AND REGULATION	
	15.10	Proteomics	
15.11 Microarrays and the Transcriptome
	CHAPTER 16 VIRAL DIVERSITY
	I	VIRUSES OF PROKARYOTES	
	16.1	RNA Bacteriophages	
	16.2	Icosahedral Single-Stranded DNA Bacteriophages	
	16.3	Filamentous Single-Stranded DNA Bacteriophages	
	16.4	Double-Stranded DNA Bacteriophages: T7	
	16.5	Mu: A Double-Stranded Transposable DNA Bacteriophage	
	16.6	Viruses of Archaea
	II	
 II	VIRUSES OF EUKARYOTES	
	16.7	Plant Viruses	
	16.8	Positive-Strand RNA Viruses of Animals: Poliovirus and Coronaviruses	
	16.9	Negative-Strand RNA Viruses of Animals: Rabies, Influenza, and Related Viruses	
	16.10	Double-Stranded RNA Viruses: Reoviruses	
	16.11	Replication of Double-Stranded DNA Viruses of Animals	
	16.12	Double-Stranded DNA Viruses: Herpesviruses	
	16.13	Double-Stranded DNA Viruses: Pox Viruses	
	16.14	Double-Stranded DNA Viruses: Adenoviruses	
16.15 Viruses Using Reverse Transcriptase: Retroviruses and Hepadnavirus
	
	UNIT III METABOLIC DIVERSITY AND MICROBIAL ECOLOGY
	CHAPTER 17 METABOLIC DIVERSITY
	
	I	THE PHOTOTROPHIC WAY OF LIFE
	17.1	Photosynthesis
	17.2	Photosynthetic Pigments and Their Location Within the Cell
	17.3	Carotenoids and Phycobilins
	17.4	Anoxygenic Photosynthesis
	17.5	Oxygenic Photosynthesis
	17.6	Autotrophic CO2 Fixation: The Calvin Cycle
	17.7	Autotrophic CO2 Fixation: Reverse Citric Acid Cycle
		and the Hydroxypropionate Cycle	
	II
	II	CHEMOLITHOTROPHY: ENERGY FROM THE
		OXIDATION OF INORGANIC ELECTRON DONORS	
	17.8	Inorganic Electron Donors and Energetics	
	17.9	Hydrogen Oxidation	
	17.10	Oxidation of Reduced Sulfur Compounds	
	17.11	Iron Oxidation	
	17.12	Nitrification and Anammox	
	III	
	III	THE ANAEROBIC WAY OF LIFE: ANAEROBIC RESPIRATIONS	
	17.13	Anaerobic Respiration	
	17.14	Nitrate Reduction and the Denitrification Process	
	17.15	Sulfate Reduction	
	17.16	Acetogenesis	
	17.17	Methanogenesis	
	17.18	Ferric Iron, Manganese, Chlorate, and Organic Electron Acceptors	
	
	IV	THE ANAEROBIC WAY OF LIFE: FERMENTATIONS AND SYNTROPHY
	17.19	Fermentations: Energetic and Redox Considerations	
17.20 Fermentative Diversity
17.21 Syntrophy	
	
	V	HYDROCARBON OXIDATION AND THE ROLE
		OF O2 IN THE CATABOLISM OF ORGANIC COMPOUNDS	
	17.22	Molecular Oxygen (O2) as a Reactant in Biochemical Processes	
	17.23	Hydrocarbon Oxidation	
	17.24	Methanotrophy and Methylotrophy	
	17.25	Hexose, Pentose, and Polysaccharide Metabolism	
	17.26	Organic Acid Metabolism	
	17.27	Lipids as Microbial Nutrients	
	V
	VI	NITROGEN FIXATION
	17.28	Nitrogenase and the Process of Nitrogen Fixation	
17.29 Genetics and Regulation of N2 Fixation
	CHAPTER 18 METHODS IN MICROBIAL ECOLOGY
	
	I	CULTURE-DEPENDENT ANALYSES OF MICROBIAL COMMUNITIES
	18.1	Enrichment and Isolation
18.2 Isolation in Pure Culture	
II	MOLECULAR (CULTURE-INDEPENDENT) ANALYSES OF MICROBIAL
		 COMMUNITIES	
	18.3	Viability and Quantification Using Staining Techniques	
	18.4	Genetic Stains	
	18.5	Linking Specific Genes to Specific Organisms Using PCR	
18.6 Environmental Genomics
	III	MEASURING MICROBIAL ACTIVITIES IN NATURE	
	18.7	Radioisotopes and Microelectrodes	
18.8 Stable Isotopes
CHAPTER 19 MICROBIAL ECOLOGY
I MICROBIAL ECOSYSTEMS	 
	19.1	Populations, Guilds, and Communities	 
	19.2	Environments and Microenvironments	 
	19.3	Microbial Growth on Surfaces and Biofilmshwater Microbial Habitats	 
	
	II	SOIL AND FRESHWATER MICROBIAL HABITATS
	19.4	Terrestrial Environments	 
	19.5	Freshwater Environments	 
		III	
	III		MARINE MICROBIOLOGY	 
	19.6	Marine Habitats and Microbial Distribution	 
	19.7	Deep-Sea Microbiology	 
	19.8	Hydrothermal Vents	 
		IV	
	IV		THE CARBON AND OXYGEN CYCLES	 
	19.9	The Carbon Cycle	 
	19.10	Syntrophy and Methanogenesis	 
	19.11	Carbon Cycling in Ruminant Animals	 
		V	
	V		OTHER KEY NUTRIENT CYCLES	 
	19.12	The Nitrogen Cycle	 
	19.13	The Sulfur Cycle	 
	19.14	The Iron Cycle	 
		VI	
	VI		MICROBIAL BIOREMEDIATION	 
	19.15	Microbial Leaching of Ores	 
	19.16	Mercury and Heavy Metal Transformations	 
	19.17	Petroleum Biodegradation	 
	19.18	Biodegradation of Xenobiotics	 
		VII	
	VII		MICROBIAL INTERACTIONS WITH PLANTS	 
	19.19	The Plant Environment	 
	19.20	Lichens and Mycorrhizae	 
	19.21	Agrobacterium and Crown Gall Disease
19.22 Root Nodule Bacteria and Symbiosis with Legumes
UNIT IV IMMUNOLOGY, PATHOGENICITY, AND HOST RESPONSES
 CHAPTER 20 MICROBIAL GROWTH CONTROL
	Iii
	I	PHYSICAL ANTIMICROBIAL CONTROL	697
	20.1	Heat Sterilization	
	20.2	Radiation Sterilization
	20.3	Filter Sterilization	
	
	II	CHEMICAL ANTIMICROBIAL CONTROL	703
	20.4	Chemical Growth Control	
	20.5	Chemical Antimicrobial Agents for External Use	
	
	III	ANTIMICROBIAL AGENTS USED IN VIVO	707
	20.6	Synthetic Antimicrobial Drugs	
	20.7	Naturally Occurring Antimicrobial Drugs: Antibiotics	
	20.8	(-Lactam Antibiotics: Penicillins and Cephalosporins	
	20.9	Antibiotics from Prokaryotes	
	
	IV	CONTROL OF VIRUSES AND EUKARYOTIC PATHOGENS	716
	20.10	Antiviral Drugs	
	20.11	Antifungal Drugs	
	
	V	ANTIMICROBIAL DRUG RESISTANCE AND DRUG DISCOVERY
	20.12	Antimicrobial Drug Resistance	
	20.13	The Search for New Antimicrobial Drugs	
CHAPTER 21 MICROBIAL INTERACTIONS WITH HUMANS
	I
	I	BENEFICIAL MICROBIAL INTERACTIONS WITH HUMANS
	21.1	Overview of Human-Microbe Interactions	
	21.2	Normal Microbial Flora of the Skin	
	21.3	Normal Microbial Flora of the Oral Cavity	
	21.4	Normal Microbial Flora of the Gastrointestinal Tract	
	21.5	Normal Microbial Flora of Other Body Regions	
	
	II	HARMFUL MICROBIAL INTERACTIONS WITH HUMANS	737
	21.6	Entry of the Pathogen into the Host	
	21.7	Colonization and Growth	
	21.8	Virulence	
	
	III	VIRULENCE FACTORS AND TOXINS	742
	21.9	Virulence Factors	
	21.10	Exotoxins	
	21.11	Enterotoxins	
	21.12	Endotoxins	
	
	IV 	HOST FACTORS IN INFECTION	749
	21.13	Host Risk Factors	
	21.14	Innate Resistance to Infection	
CHAPTER 22 ESSENTIALS OF IMMUNOLOGY
I	
	I	OVERVIEW OF THE IMMUNE RESPONSE	757
	22.1	Cells and Organs of the Immune System	
	22.2	The Innate Immune Response	
22.3 Inflammation, Fever, and Septic Shock
22.4 The Adaptive Immune Response	
	III
	II	ANTIGENS, T CELLS, AND CELLULAR IMMUNITY	764
	22.5	Immunogens and Antigens	
	22.6	Presentation of Antigen to T Lymphocytes	
	22.7	T-Cytotoxic Cells and Natural Killer Cells	
	22.8	T-Helper Cells: Activating the Immune Response	
	
	III	ANTIBODIES AND IMMUNITY	771
	22.9	Antibodies (Immunoglobulins)	
	22.10	Antibody Production	
	22.11	Complement, Antibodies, and Pathogen Destruction	
	IV
	IV	IMMUNITY AND PREVENTION OF INFECTIOUS DISEASE	
22.12 Natural Immunity
22.13 Artificial Immunity	
	22.14 	New Immunization Strategies
	
	V	IMMUNE RESPONSE DISEASES	781
	22.15	Allergy, Hypersensitivity, and Autoimmunity	
	22.16	Superantigens	
CHAPTER 23 MOLECULAR IMMUNOLOGY
I	
	I	RECEPTORS AND IMMUNITY	788
23.1 Innate Immunity and Pattern Recognition 	
23.2 Adaptive Immunity and the Immunoglobulin Superfamily	
	
	II 	THE MAJOR HISTOCOMPATIBILITY COMPLEX (MHC)	789
	23.3	MHC Protein Structure	
	23.4	MHC Genes and Polymorphism	
	
	III	ANTIBODIES	792
	23.5	Antibody Proteins and Antigen Binding	
	23.6	Antibody Genes and Diversity	
	
	IV	T-CELL RECEPTORS	795
	23.7	TCR Proteins and Antigen Binding	
	23.8	TCR Genes and Diversity	
	
	V	MOLECULAR SIGNALS IN IMMUNITY	797
	23.9	Clonal Selection and Tolerance	
	23.10	Second Signals	
	23.11	Cytokines and Chemokines	
CHAPTER 24 DIAGNOSTIC MICROBIOLOGY AND IMMUNOLOGY
I	
	I	GROWTH-DEPENDENT DIAGNOSTIC METHODS
	24.1	Isolation of Pathogens from Clinical Specimens	
	24.2	Growth-Dependent Identification Methods	
	24.3	Antimicrobial Drug Susceptibility Testing 	
	24.4	Safety in the Microbiology Laboratory	
	
	II 	IMMUNOLOGY AND DIAGNOSTIC METHODS	818
	24.5	Immunoassays for Infectious Disease	
	24.6	Polyclonal and Monoclonal Antibodies	
	24.7	In Vitro Antigen-Antibody Reactions: Serology	
	24.8	Agglutination	
	24.9	Fluorescent Antibodies	
	24.10	Enzyme-Linked Immunosorbent Assay and Radioimmunoassay	
	24.11	Immunoblot Procedures	
	III
	III 	MOLECULAR AND VISUAL CLINICAL DIAGNOSTIC METHODS
	24.12	Nucleic Acid Methods	
	24.13	Diagnostic Virology	
UNIT V MICROBIAL DISEASES
CHAPTER 25 EPIDEMIOLOGY
I	
	I	PRINCIPLES OF EPIDEMIOLOGY	847
	25.1	The Science of Epidemiology	
	25.2	The Vocabulary of Epidemiology	
	25.3	Disease Reservoirs and Epidemics	
	25.4	Infectious Disease Transmission	
	25.5	The Host Community	
	
	II	CURRENT EPIDEMICS	858
	25.6	The AIDS Pandemic	
25.7 Hospital-Acquired (Nosocomial) Infections
25.8 Severe Acute Respiratory Syndrome	
	
	III 	EPIDEMIOLOGY AND PUBLIC HEALTH	862
	25.9	Public Health Measures for the Control of Disease	
	25.10	Global Health Considerations	
	25.11	Emerging and Reemerging Infectious Diseases	
	25.12	Biological Warfare and Biological Weapons	
25.13 Anthrax as a Biological Weapon
CHAPTER 26 PERSON-TO-PERSON MICROBIAL DISEASES
I	
	I	AIRBORNE TRANSMISSION OF DISEASES	876
	26.1	Airborne Pathogens	
	26.2	Streptococcal Diseases	
	26.3	Corynebacterium and Diphtheria	
	26.4	Bordetella and Whooping Cough	
	26.5	Mycobacterium, Tuberculosis, and Leprosy	
	26.6	Neisseria meningitidis, Meningitis, and Meningococcemia	
	26.7	Viruses and Respiratory Infections	
	26.8	Colds and Influenza
	
	II	DIRECT CONTACT TRANSMISSION OF DISEASES	893
	26.9	Staphylococcus	
	26.10	Helicobacter pylori and Gastric Ulcers	
	26.11	Hepatitis Viruses	
	
	III	SEXUALLY TRANSMITTED DISEASES	897
	26.12	Gonorrhea and Syphilis	
	26.13	Chlamydia, Herpes, and Trichomoniasis	
	26.14	Acquired Immunodeficiency Syndrome: AIDS and HIV	
CHAPTER 27 ANIMAL-TRANSMITTED, ARTHROPOD-TRANSMITTED, AND SOILBORNE MICROBIAL DISEASES
	I
 I		ANIMAL-TRANSMITTED DISEASES	914
	27.1	Rabies	
	27.2	Hantavirus Pulmonary Syndrome	
		II
	II		ARTHROPOD-TRANSMITTED DISEASES	917
	27.3	Rickettsial Diseases	
	27.4	Lyme Disease	
	27.5	Malaria	
	27.6 	West Nile Virus	
	27.7	Plague	
		II
	III		SOILBORNE DISEASES	929
	27.8	The Pathogenic Fungi	
	27.9	Tetanus	
CHAPTER 28 WASTEWATER TREATMENT, WATER PURIFICATION, AND WATERBORNE MICROBIAL DISEASES
I	
	I		WASTEWATER MICROBIOLOGY AND WATER PURIFICATION	935
	28.1	Public Health and Water Quality	
	28.2	Wastewater and Sewage Treatment	
	28.3	Drinking Water Purification	
	
	II		WATERBORNE MICROBIAL DISEASES	942
	28.4	Sources of Waterborne Infection	
	28.5	Cholera	
	28.6	Giardiasis and Cryptosporidiosis	
	28.7	Legionellosis (Legionnaire's Disease)	
	28.8	Typhoid Fever and Other Waterborne Diseases	
CHAPTER 29 FOOD PRESERVATION AND FOODBORNE MICROBIAL DISEASES
I	
	I		FOOD PRESERVATION AND MICROBIAL GROWTH	951
	29.1	Microbial Growth and Food Spoilage	
29.2 Food Preservation
29.3 Fermented Foods	
		II
	II 		MICROBIAL SAMPLING AND FOOD POISONING	954
	29.4	Foodborne Diseases and Microbial Sampling	
	29.5	Staphylococcal Food Poisoning	
	29.6	Clostridial Food Poisoning
	
	III	FOOD INFECTION	
	29.7	Salmonellosis	
	29.8	Pathogenic Escherichia coli	
	29.9	Campylobacter	
	29.10	Listeriosis	
	29.11	Other Foodborne Infectious Diseases		
	UNIT VI MICROORGANISMS AS TOOLS FOR INDUSTRY AND RESEARCH
	CHAPTER 30 INDUSTRIAL MICROBIOLOGY
		I	
	I		INDUSTRIAL MICROOGANISMS AND PRODUCT FORMATION	
	30.1	Microorganisms and Their Products	
	30.2	Primary and Secondary Metabolites	
	30.3	Characteristics of Large-Scale Fermentations	
30.4 Fermentation Scale-Up
II	MAJOR INDUSTRIAL PRODUCTS FOR THE HEALTH INDUSTRY	
	30.5	Antibiotics: Isolation and Characterization	
	30.6	Industrial Production of Penicillins and Tetracyclines	
	30.7	Vitamins and Amino Acids	
	30.8	Steroids and the Biotransformation Process	
	30.9	Enzymes as Industrial Products	
	
	III	MAJOR INDUSTRIAL PRODUCTS FOR THE FOOD AND BEVERAGE	INDUSTRIES
30.10 Alcohol and Alcoholic Beverages 
30.11 Vinegar Production	
	30.12	Citric Acid and Other Organic Compounds	
	30.13	Yeast as a Food and Food Supplement	
30.14 Mushrooms as a Food Source
	CHAPTER 31 GENETIC ENGINEERING AND BIOTECHNOLOGY
		I	
	I	THE TECHNIQUES OF GENETIC ENGINEERING	
	31.1	Review of Principles Underlying Genetic Engineering	
	31.2	Hosts for Cloning Vectors	
	31.3	Finding the Right Clone	
	31.4	Specialized Vectors	
31.5 Expression of Mammalian Genes in Bacteria
II	PRACTICAL APPLICATIONS OF GENETIC ENGINEERING	
31.6 Production of Insulin: The Beginnings of Commercial Biotechnology
31.7 Other Mammalian Proteins and Products
31.8 Genetically Engineered Vaccines	
31.9	Genetic Engineering in Animal and Human Genetics
	31.10	Genetic Engineering in Plant Agriculture: Transgenic Plants	

Library of Congress Subject Headings for this publication:

Microbiology.
Microbiology.