NCBI CDD Logo
Entrez CDD Structure Protein Help
?
pfam00517: GP41 
Envelope Polyprotein GP41
The GP41 subunit of the envelope protein complex from human and simian immunodeficiency viruses (HIV and SIV) mediates membrane fusion during viral entry.
Statistics
?
PSSM-Id: 109568
View PSSM: pfam00517
Aligned: 9 rows
Created: 29-Sep-2008
Updated: 30-Oct-2008
Structure
?
Aligned Rows:
pfam00517 is a member of the superfamily cl02885.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119501  542 FLGFLATAGSAMSAASVTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGAKNLQTRVTAIEKYLKDQAQLNSWGC 621
gi 119456  517 FLGFLATAGSAMGARSLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQARVTAIEKYLKHQAQLNSWGC 596
gi 119457  519 FLGFLTTAGVAMGTASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKILQARVTAIEKYLKDQAQLNSWGC 598
gi 119492  550 FLGFLGAAGTAMGAAATALTVQSQHLLAGILQQQKNLLAAVEAQQQMLKLTIWGVKNLNARVTALEKYLEDQARLNAWGC 629
gi 399443  529 FLGFLGAAGTAMGAAATTLTVQSRHLLAGILQQQKNLLAAVEQQQQLLKLTIWGVKNLNARVTALEKYLEDQARLNSWGC 608
gi 119439  519 FLGFLGAAGSTMGAASITLTVQARRLLSGIVQQQNNLLRAIEAQQHLLKLTVWGIKQLQARILAVERYLKDQQLLGIWGC 598
gi 119432  518 FLGFLGAAGSTMGAVSLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGC 597
gi 119494  509 FLGFLGAAGSTMGAAAVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLSIWGVKQLQARLLAVERYLQDQQILGLWGC 588
gi 1352375 520 FLGFLAMAGSAMGATSLTLSAQSRTLLAGIVQQQQQPVDVVKRQQELLRLTVWGTKNLQARVTAIEKYLKDQAQLNSWGC 599
                       90       100       110       120       130       140       150       160
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119501  622 AFRQVCHTTVPRPNDTL-----TPNWNNMTWQEWEKQVNFLEANITQSLEEAQIQQEKNTYELQKLNSWDIFGNWFDLTS 696
gi 119456  597 AFRQVCHTTVPWVNDSL-----SPDWKNMTWQEWEKQVRYLEANISQSLEEAQIQQEKNMYELQKLNSWDILGNWFDLTS 671
gi 119457  599 AFRQVCHTTVPWANESL-----TPDWNNMTWQEWEQKVRYLEANISQSLEEAQLQQEKNMYELQKLNNWDVFTNWFDLTS 673
gi 119492  630 AWKQVCHTTVPWQWNNR-----TPDWNNMTWLEWERQISYLEGNITTQLEEARAQEEKNLDAYQKLSSWSDFWSWFDFSK 704
gi 399443  609 AWKQVCHTTVPWKYNN------TPKWDNMTWLEWERQINALEGNITQLLEEAQNQESKNLDLYQKLDDWSGFWSWFSLST 682
gi 119439  599 SGKIICPTNVPWNSSWSnk-sqSDIWDKMTWLEWDKEVSNYTQVIYNLIEESQTQQEINERDLLALDKWANLWNWFDISN 677
gi 119432  598 SGKLICTTAVPWNASWSnk-slEDIWDNMTWMQWEREIDNYTNTIYTLLEESQNQQEKNEQELLELDKWASLWNWFSITN 676
gi 119494  589 SGKAVCYTTVPWNNSWPgsnstDDIWGNLTWQQWDKLVSNYTGKIFGLLEEAQSQQEKNERDLLELDQWASLWNWFDITK 668
gi 1352375 600 AFRQVCHTTVPWPNETL-----TPNWNNMTWQQWEKQVHFLDANITALLEEAQIQQEKNMYELQKINSWDVFGNWFDLTS 674
                      170       180       190       200       210       220       230       240
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119501  697 WIKYIQYGVLIVLGVIGLRIVIYVVQMLARLRQGYRPVFssppayvQQIPIQTGQ-ELPTKEGEEGDGGGRGGNRSWPWQ 775
gi 119456  672 WVKYIQYGVHIVVGIIALRIAIYVVQLLSRFRKGYRPVFssppgylQQIHIHKDR-GQPANEGTEEDVGGDSGYDLWPWP 750
gi 119457  674 WISYIQYGVYIVVGIIVLRIVIYVVQMLSRLRKGYRPVFssspgyiQQIHIHKDP-EQPASEETEEDVGGNGGDRSWPWQ 752
gi 119492  705 WLNILKIGFLDVLGIIGLRLLYTVYSCIARVRQGYSPLS-------PQIHIHPWK-GQPDNAEGPGEGGDKRKNSSEPWQ 776
gi 399443  683 WLGYVKIGFLVIVIILGLRFAWVLWGCIRNIRQGYNPL--------PQIHIHSSA-ERPDNGGGQDRGGESSSSKLIRLQ 753
gi 119439  678 WLWYIKIFIMIVGGLIGLRIVFAVLSIINRVRQGYSPLS-------FQTLTHHQReP-DRPERIEEGGGEQDRDRSIRLV 749
gi 119432  677 WLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLS-------FQTRLPVPRgP-DRPDGIEEEGGERDRDRSVRLV 748
gi 119494  669 WLWYIKIFLMAVGGIIGLRIIMTVFSVVRRVRQGYSPLS-------LQTLIPVQReQ-GRLGEIDEGGGEQDRSRSVRLV 740
gi 1352375 675 WIKYIHLGLYIVAGLVVLRIVVYIVQMLARLRKGYRPVFssppsytQQIPIRKDR-GQPANEETEEGGGNDGDYRSWPWQ 753
                      250       260       270       280       290       300       310       320
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119501  776 IEYIH---------FLIRQLIRLLTWLFSSCRDWLLRNCQTLQPVLQSlsrtlQRAREVIRVQIAYLQYGWRYLQEAAQA 846
gi 119456  751 INYVQ---------FLIHLLTRLLIGLYNICRDLLSKNSPTRRLISQSl----TAIRDWLRLKAAQLQYGCEWIQEAFQA 817
gi 119457  753 IEYIH---------FLIRQLIRLLTGLYNICRNLLSRIFQTLQPILQN-------LRDWLRPKVAFLQYGCEWIQEAFQA 816
gi 119492  777 KESGTaewksnwckRLTNWCSISSIWLYNSCLTLLV---------------------HLRSAFQ-YIQYGLGELKAAAQE 834
gi 399443  754 EESSTpsrinnwwlNFKSCSLRIRTWCYNICLTLLI---------------------FIRTAVG-YLQYGLQQLQEAATG 811
gi 119439  750 SGFLP---------LAWDDLRSLCLFCYHRLRDCALIAARIVETLI-------RRGWETLKYLGNLVIYWGQELKNSAIN 813
gi 119432  749 DGFLA---------LIWEDLRSLCLFSYRRLRDLLLIAARTVEILG-------HRGWEALKYWWSLLQYWIQELKNSAVS 812
gi 119494  741 EGCLP---------LIWDDLRNLGIWSYQSLTSLACNVWRQLKTLGHLilhslRLLRERLCLLGGIIQYWGKELKISAIS 811
gi 1352375 754 IEYIH---------FLLRQLRNLLIWLYNGCRTLLLKTFQILHQISTN--------LQPLRLPVAYLQYGISWFQEALRA 816
                      330       340       350       360
               ....*....|....*....|....*....|....*....|...
gi 119501  847 WWKFVRETLASAWRDLWETLGRVGRGILAIPRRIRQGLELTLL 889
gi 119456  818 FARTTRETLAGAWGWLWEAARRIGRGILAVPRRIRQGAELALL 860
gi 119457  817 AARAARETLAGACRDVWGMLQRIGRGILAVPRRIRQGAELALL 859
gi 119492  835 AVVALARLAQNAGYQIWLACRSAYRAIINSPRRVRQGLEGILN 877
gi 399443  812 LAQALARAAREAWGRLGAIVRSAYRAVINSPRRVRQGLEKVLG 854
gi 119439  814 LLDTVAIAVADWTDRVIEVVQRAGRAFLNIPRRIRQGLERALL 856
gi 119432  813 WLNATAIAVTEGTDRVIEVAQRAYRAILHIHRRIRQGLERLLL 855
gi 119494  812 LLDATAIAVAEGTDRIIEAFQVTLRIIRNIPRRIRQGLERALL 854
gi 1352375 817 AARATGETLASAGETLWEALRRAARAIIAIPRRIRQGLELTLL 859
Citing CDD
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap