R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 9 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|10176918|dbj|BAB10162.1| (AB016880) auxin response factor-like protein
[Arabidopsis thaliana]
Length = 859
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 859
0 150 300 450 600 750
Plus Strand HSPs:
Score = 649 (228.5 bits), Expect = 1.3e-62, P = 1.3e-62
Identities = 119/151 (78%), Positives = 130/151 (86%), Frame = +1
Query: 1 EQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRF 180
EQ MP+YDLP K+LCRVINV LKAE DTDEV+AQ+TLLPE NQDENA+EKE P PPRF
Sbjct: 100 EQQMPLYDLPSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRF 159
Query: 181 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHI 360
VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDM++QPPTQELVAKDLH N WRFRHI
Sbjct: 160 QVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHI 219
Query: 361 FRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
FRGQPR+HLLQSGW+VFV+ + G F
Sbjct: 220 FRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 250
>gi|2245378|gb|AAC49751.1| (U83245) auxin response factor 1 [Arabidopsis
thaliana] >gi|5080809|gb|AAD39318.1|AC007258_7 (AC007258) auxin
response factor 1 [Arabidopsis thaliana]
Length = 665
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 665
0 150 300 450 600
Plus Strand HSPs:
Score = 528 (185.9 bits), Expect = 8.3e-50, P = 8.3e-50
Identities = 97/151 (64%), Positives = 117/151 (77%), Frame = +1
Query: 1 EQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRF 180
EQ MP ++LP KILC+VIN+ +AEP+TDEV+AQ+TLLPE +Q E + P P +
Sbjct: 61 EQQMPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSE-PTSPDAPVQEPEKC 119
Query: 181 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHI 360
VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDM++QPP QELVA DLH + W FRHI
Sbjct: 120 TVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHI 179
Query: 361 FRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
FRGQPR+HLL +GW+VFV+ + G F
Sbjct: 180 FRGQPRRHLLTTGWSVFVSSKKLVAGDAFIF 210
>gi|7339711|dbj|BAA92916.1| (AP001539) EST C26826(C50159) corresponds to a
region of the predicted gene.~Similar to Arabidopsis thaliana
chromosome II BAC F13A10; putative ARF1 family auxin responsive
transcription factor. (AC006418) [Oryza sativa]
Length = 613
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 613
0 150 300 450 600
Plus Strand HSPs:
Score = 489 (172.1 bits), Expect = 1.1e-45, P = 1.1e-45
Identities = 91/145 (62%), Positives = 112/145 (77%), Frame = +1
Query: 4 QHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAP-PRF 180
+ + ++ +P KILC+V+NV LKAE +TDEVFAQ+TL P+P+Q EN PP PR
Sbjct: 59 EQIKMFQVPYKILCKVVNVELKAETETDEVFAQITLQPDPDQ-ENLPTLPDPPLPEQPRP 117
Query: 181 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHI 360
VHSFCK LT SDTSTHGGFSVLRRHA+ECLPPLDM+ PTQEL+ KDLHG+ WRF+HI
Sbjct: 118 VVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHI 177
Query: 361 FRGQPRKHLLQSGWNVFVTPXSXLLG 438
+RGQPR+HLL +GW+ FVT + G
Sbjct: 178 YRGQPRRHLLTTGWSTFVTSKKLISG 203
>gi|4415934|gb|AAD20164.1| (AC006418) putative ARF1 family auxin responsive
transcription factor [Arabidopsis thaliana]
Length = 622
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 622
0 150 300 450 600
Plus Strand HSPs:
Score = 486 (171.1 bits), Expect = 2.4e-45, P = 2.4e-45
Identities = 93/151 (61%), Positives = 113/151 (74%), Frame = +1
Query: 1 EQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRF 180
+Q +PV++LPPKILCRV++V LKAE +TDEV+AQ+TL PE +Q E + P P +
Sbjct: 82 DQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPLVEPAKP 140
Query: 181 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHI 360
V SF K LTASDTSTHGGFSVLR+HA ECLP LDMT+ PTQELVA+DLHG WRF+HI
Sbjct: 141 TVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHI 200
Query: 361 FRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
FRGQPR+HLL +GW+ FVT + G F
Sbjct: 201 FRGQPRRHLLTTGWSTFVTSKRLVAGDAFVF 231
>gi|11357187|pir||T47975 auxin response factor-like protein - Arabidopsis
thaliana >gi|6850874|emb|CAB71113.1| (AL132959) auxin response
factor-like protein [Arabidopsis thaliana]
Length = 613
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 613
0 150 300 450 600
Plus Strand HSPs:
Score = 485 (170.7 bits), Expect = 3.0e-45, P = 3.0e-45
Identities = 91/150 (60%), Positives = 111/150 (74%), Frame = +1
Query: 4 QHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFH 183
+ +PV+DLPPKILCRV++V LKAE +TDEV+AQ+TL PE +Q E + P P +
Sbjct: 66 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPIVGPTKQE 124
Query: 184 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIF 363
HSF K LTASDTSTHGGFSVLR+HA ECLP LDMT+ PTQELV +DLHG WRF+HIF
Sbjct: 125 FHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIF 184
Query: 364 RGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
RGQPR+HLL +GW+ FV+ + G F
Sbjct: 185 RGQPRRHLLTTGWSTFVSSKRLVAGDAFVF 214
>gi|12248007|gb|AAG50095.1|AF334717_1 (AF334717) ARF16 [Arabidopsis thaliana]
Length = 602
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | || 602
0 150 300 450 600
Plus Strand HSPs:
Score = 485 (170.7 bits), Expect = 3.0e-45, P = 3.0e-45
Identities = 91/150 (60%), Positives = 111/150 (74%), Frame = +1
Query: 4 QHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFH 183
+ +PV+DLPPKILCRV++V LKAE +TDEV+AQ+TL PE +Q E + P P +
Sbjct: 66 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPIVGPTKQE 124
Query: 184 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIF 363
HSF K LTASDTSTHGGFSVLR+HA ECLP LDMT+ PTQELV +DLHG WRF+HIF
Sbjct: 125 FHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIF 184
Query: 364 RGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
RGQPR+HLL +GW+ FV+ + G F
Sbjct: 185 RGQPRRHLLTTGWSTFVSSKRLVAGDAFVF 214
>gi|7484816|pir||T08917 auxin response factor 9 - Arabidopsis thaliana
>gi|4580575|gb|AAD24427.1|AF082176_1 (AF082176) auxin response
factor 9 [Arabidopsis thaliana] >gi|4972102|emb|CAB43898.1|
(AL078468) auxin response factor 9 (ARF9) [Arabidopsis thaliana]
>gi|7269247|emb|CAB81316.1| (AL161560) auxin response factor 9
(ARF9) [Arabidopsis thaliana]
Length = 638
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 638
0 150 300 450 600
Plus Strand HSPs:
Score = 480 (169.0 bits), Expect = 1.0e-44, P = 1.0e-44
Identities = 89/147 (60%), Positives = 110/147 (74%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHS 192
P++ LPPKILC V+NV L+AE DTDEV+AQ+TL+P + + + + P R VHS
Sbjct: 56 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHS 115
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQ 372
F K LTASDTSTHGGFSVLR+HA ECLPPLDMT+Q PTQELVA+D+HG W+F+HIFRGQ
Sbjct: 116 FSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQ 175
Query: 373 PRKHLLQSGWNVFVTPXSXLLGMRLXF 453
PR+HLL +GW+ FVT + G F
Sbjct: 176 PRRHLLTTGWSTFVTSKRLVAGDTFVF 202
>gi|2245390|gb|AAB62404.1| (U89296) auxin response transcription factor 3; ARF3
[Arabidopsis thaliana]
Length = 608
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | || 608
0 150 300 450 600
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 5.4e-37, P = 5.4e-37
Identities = 82/155 (52%), Positives = 104/155 (67%), Frame = +1
Query: 16 VYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEG---PPAAPPRFHV 186
+Y LPP + CR+++V L AE TDEV+AQV+LLPE E V +EG + V
Sbjct: 91 IYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKV-REGIIDVDGGEEDYEV 149
Query: 187 -------HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXW 345
H FCKTLTASDTSTHGGFSV RR A++C PPLD ++ P+QEL+A+DLHG W
Sbjct: 150 LKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEW 209
Query: 346 RFRHIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
RFRHI+RGQPR+HLL +GW+ FV + G + F
Sbjct: 210 RFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF 245
>gi|7484972|pir||T03278 gene ETTIN protein - Arabidopsis thaliana
>gi|3228517|gb|AAC23589.1| (AF007788) ETTIN [Arabidopsis thaliana]
Length = 608
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | || 608
0 150 300 450 600
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 5.4e-37, P = 5.4e-37
Identities = 82/155 (52%), Positives = 104/155 (67%), Frame = +1
Query: 16 VYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEG---PPAAPPRFHV 186
+Y LPP + CR+++V L AE TDEV+AQV+LLPE E V +EG + V
Sbjct: 91 IYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKV-REGIIDVDGGEEDYEV 149
Query: 187 -------HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXW 345
H FCKTLTASDTSTHGGFSV RR A++C PPLD ++ P+QEL+A+DLHG W
Sbjct: 150 LKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEW 209
Query: 346 RFRHIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
RFRHI+RGQPR+HLL +GW+ FV + G + F
Sbjct: 210 RFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF 245
>gi|3805770|gb|AAC69148.1| (U78721) auxin response transcription factor 3
(ETTIN/ARF3) [Arabidopsis thaliana]
>gi|12484199|gb|AAG53998.1|AF336917_1 (AF336917) ARF3 [Arabidopsis
thaliana]
Length = 608
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | || 608
0 150 300 450 600
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 5.4e-37, P = 5.4e-37
Identities = 82/155 (52%), Positives = 104/155 (67%), Frame = +1
Query: 16 VYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEG---PPAAPPRFHV 186
+Y LPP + CR+++V L AE TDEV+AQV+LLPE E V +EG + V
Sbjct: 91 IYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKV-REGIIDVDGGEEDYEV 149
Query: 187 -------HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXW 345
H FCKTLTASDTSTHGGFSV RR A++C PPLD ++ P+QEL+A+DLHG W
Sbjct: 150 LKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEW 209
Query: 346 RFRHIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
RFRHI+RGQPR+HLL +GW+ FV + G + F
Sbjct: 210 RFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF 245
>gi|4102598|gb|AAD01512.1| (AF013466) auxin response factor 4 [Arabidopsis
thaliana] >gi|9757747|dbj|BAB08228.1| (AB011483) auxin response
factor 4 [Arabidopsis thaliana]
Length = 788
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | 788
0 150 300 450 600 750
Plus Strand HSPs:
Score = 411 (144.7 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 83/158 (52%), Positives = 109/158 (68%), Frame = +1
Query: 10 MPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEP-----NQDENAV-----EKEGP 159
+P +DL P+I+CRV+NV L A DTDEV+ QVTLLP N + V E+E
Sbjct: 106 IPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERN 165
Query: 160 PAAPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGN 339
++ + H FCKTLTASDTSTHGGFSV RR A++C PLD +Q P+QEL+AKDLHG
Sbjct: 166 GSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGV 225
Query: 340 XWRFRHIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
W+FRHI+RGQPR+HLL +GW++FV+ + + G + F
Sbjct: 226 EWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLF 263
>gi|4104931|gb|AAD02219.1| (AF042196) auxin response factor 8 [Arabidopsis
thaliana]
Length = 811
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | 811
0 150 300 450 600 750
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 4.3e-36, P = 4.3e-36
Identities = 83/150 (55%), Positives = 108/150 (72%), Frame = +1
Query: 7 HMPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLP-EPN-QDENAVEKE-GPPAAPP 174
H+P Y LPP+++C++ NV + A+ +TDEV+AQ+TL P P Q E V E G P+ P
Sbjct: 63 HIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQP 122
Query: 175 RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFR 354
+ FCKTLTASDTSTHGGFSV RR A++ PPLD T QPP QEL+A+DLH W+FR
Sbjct: 123 SNY---FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFR 179
Query: 355 HIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
HIFRGQP++HLL +GW+VFV+ + G + F
Sbjct: 180 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIF 212
>gi|9758525|dbj|BAB08972.1| (AB024026) auxin responsive transcription factor
[Arabidopsis thaliana]
Length = 821
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 821
0 150 300 450 600 750
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 4.5e-36, P = 4.5e-36
Identities = 83/150 (55%), Positives = 108/150 (72%), Frame = +1
Query: 7 HMPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLP-EPN-QDENAVEKE-GPPAAPP 174
H+P Y LPP+++C++ NV + A+ +TDEV+AQ+TL P P Q E V E G P+ P
Sbjct: 63 HIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQP 122
Query: 175 RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFR 354
+ FCKTLTASDTSTHGGFSV RR A++ PPLD T QPP QEL+A+DLH W+FR
Sbjct: 123 SNY---FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFR 179
Query: 355 HIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
HIFRGQP++HLL +GW+VFV+ + G + F
Sbjct: 180 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIF 212
>gi|4102600|gb|AAD01513.1| (AF013467) ARF6 [Arabidopsis thaliana]
>gi|12322119|gb|AAG51093.1|AC025295_1 (AC025295) auxin response
factor 6 (ARF6) [Arabidopsis thaliana]
Length = 933
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | | 933
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 6.3e-36, P = 6.3e-36
Identities = 77/152 (50%), Positives = 106/152 (69%), Frame = +1
Query: 1 EQHMPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPR 177
+ H+P Y L P+++C++ NV + A+ +TDEV+AQ+TL P Q++ P R
Sbjct: 62 DAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSR 121
Query: 178 FHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRH 357
+ FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP QEL+A+DLH N W+FRH
Sbjct: 122 QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRH 181
Query: 358 IFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
IFRGQP++HLL +GW+VFV+ + G + F
Sbjct: 182 IFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 213
>gi|10086486|gb|AAG12546.1|AC007797_6 (AC007797) IAA24 [Arabidopsis thaliana]
Length = 850
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 850
0 150 300 450 600 750
Plus Strand HSPs:
Score = 372 (131.0 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 73/136 (53%), Positives = 97/136 (71%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLP-EPNQDENAVEKEGPPAAPPRFH 183
+P Y +LP +++C+V NV L A+ D+DE++AQ++L P +D V G +
Sbjct: 85 VPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGS-KHP 143
Query: 184 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIF 363
FCKTLTASDTSTHGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+
Sbjct: 144 TEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIY 203
Query: 364 RGQPRKHLLQSGWNVFV 414
RGQP++HLL +GW++FV
Sbjct: 204 RGQPKRHLLTTGWSLFV 220
Score = 56 (19.7 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 13/31 (41%), Positives = 17/31 (54%), Frame = +3
Query: 384 LAAKWLECFCYSXKLXAGDAFXFLRGEKXEL 476
L W F S +L AGD+ F+R EK +L
Sbjct: 212 LTTGW-SLFVGSKRLRAGDSVLFIRDEKSQL 241
>gi|2708484|gb|AAB92476.1| (U79557) IAA24 [Arabidopsis thaliana]
Length = 890
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 890
0 150 300 450 600 750
Plus Strand HSPs:
Score = 372 (131.0 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
Identities = 73/136 (53%), Positives = 97/136 (71%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLP-EPNQDENAVEKEGPPAAPPRFH 183
+P Y +LP +++C+V NV L A+ D+DE++AQ++L P +D V G +
Sbjct: 84 VPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGS-KHP 142
Query: 184 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIF 363
FCKTLTASDTSTHGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+
Sbjct: 143 TEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIY 202
Query: 364 RGQPRKHLLQSGWNVFV 414
RGQP++HLL +GW++FV
Sbjct: 203 RGQPKRHLLTTGWSLFV 219
Score = 56 (19.7 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
Identities = 13/31 (41%), Positives = 17/31 (54%), Frame = +3
Query: 384 LAAKWLECFCYSXKLXAGDAFXFLRGEKXEL 476
L W F S +L AGD+ F+R EK +L
Sbjct: 211 LTTGW-SLFVGSKRLRAGDSVLFIRDEKSQL 240
>gi|2961085|gb|AAC39410.1| (AF037228) transcription factor [Arabidopsis
thaliana] >gi|12248005|gb|AAG50094.1|AF334716_1 (AF334716) ARF5
[Arabidopsis thaliana]
Length = 902
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | || 902
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 372 (131.0 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 73/136 (53%), Positives = 97/136 (71%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLP-EPNQDENAVEKEGPPAAPPRFH 183
+P Y +LP +++C+V NV L A+ D+DE++AQ++L P +D V G +
Sbjct: 96 VPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGS-KHP 154
Query: 184 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIF 363
FCKTLTASDTSTHGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+
Sbjct: 155 TEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIY 214
Query: 364 RGQPRKHLLQSGWNVFV 414
RGQP++HLL +GW++FV
Sbjct: 215 RGQPKRHLLTTGWSLFV 231
Score = 56 (19.7 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 13/31 (41%), Positives = 17/31 (54%), Frame = +3
Query: 384 LAAKWLECFCYSXKLXAGDAFXFLRGEKXEL 476
L W F S +L AGD+ F+R EK +L
Sbjct: 223 LTTGW-SLFVGSKRLRAGDSVLFIRDEKSQL 252
>gi|11358888|pir||T51807 transcription factor monopteros [validated] -
Arabidopsis thaliana >gi|2982222|gb|AAC60794.1| (AF037229)
transcription factor [Arabidopsis thaliana]
Length = 902
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | || 902
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 372 (131.0 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 73/136 (53%), Positives = 97/136 (71%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLP-EPNQDENAVEKEGPPAAPPRFH 183
+P Y +LP +++C+V NV L A+ D+DE++AQ++L P +D V G +
Sbjct: 96 VPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGS-KHP 154
Query: 184 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIF 363
FCKTLTASDTSTHGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+
Sbjct: 155 TEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIY 214
Query: 364 RGQPRKHLLQSGWNVFV 414
RGQP++HLL +GW++FV
Sbjct: 215 RGQPKRHLLTTGWSLFV 231
Score = 56 (19.7 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 13/31 (41%), Positives = 17/31 (54%), Frame = +3
Query: 384 LAAKWLECFCYSXKLXAGDAFXFLRGEKXEL 476
L W F S +L AGD+ F+R EK +L
Sbjct: 223 LTTGW-SLFVGSKRLRAGDSVLFIRDEKSQL 252
>gi|4103243|gb|AAD04807.1| (AF022368) BIPOSTO [Arabidopsis thaliana]
Length = 1165
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | | 1165
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 400 (140.8 bits), Expect = 5.7e-35, P = 5.7e-35
Identities = 79/149 (53%), Positives = 100/149 (67%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHV 186
+P Y +LP K++C + NV L A+P+TDEV+AQ+TL P D NA+ R
Sbjct: 65 IPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRNALLASDMGLKLNRQPN 124
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
FCKTLTASDTSTHGGFSV RR A++ P LD + QPP QELVAKD+H N W FRHI+R
Sbjct: 125 EFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYR 184
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
GQP++HLL +GW+VFV+ G + F
Sbjct: 185 GQPKRHLLTTGWSVFVSTKRFFAGDSVLF 213
>gi|4104929|gb|AAD02218.1| (AF042195) auxin response factor 7 [Arabidopsis
thaliana]
Length = 1164
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | | 1164
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 395 (139.0 bits), Expect = 1.9e-34, P = 1.9e-34
Identities = 78/149 (52%), Positives = 100/149 (67%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHV 186
+P Y +LP K++C + NV L A+P+TDEV+AQ+TL P D +A+ R
Sbjct: 65 IPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPN 124
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
FCKTLTASDTSTHGGFSV RR A++ P LD + QPP QELVAKD+H N W FRHI+R
Sbjct: 125 EFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYR 184
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
GQP++HLL +GW+VFV+ G + F
Sbjct: 185 GQPKRHLLTTGWSVFVSTKRLFAGDSVLF 213
>gi|8071650|gb|AAF71831.1|AF186466_1 (AF186466) non-phototropic hypocotyl 4
[Arabidopsis thaliana]
Length = 1165
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | | 1165
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 395 (139.0 bits), Expect = 1.9e-34, P = 1.9e-34
Identities = 78/149 (52%), Positives = 100/149 (67%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHV 186
+P Y +LP K++C + NV L A+P+TDEV+AQ+TL P D +A+ R
Sbjct: 65 IPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPN 124
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
FCKTLTASDTSTHGGFSV RR A++ P LD + QPP QELVAKD+H N W FRHI+R
Sbjct: 125 EFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYR 184
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
GQP++HLL +GW+VFV+ G + F
Sbjct: 185 GQPKRHLLTTGWSVFVSTKRLFAGDSVLF 213
>gi|8778363|gb|AAF79371.1|AC007887_30 (AC007887) F15O4.37 [Arabidopsis
thaliana]
Length = 767
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 767
0 150 300 450 600 750
Plus Strand HSPs:
Score = 382 (134.5 bits), Expect = 1.8e-33, P = 1.8e-33
Identities = 74/147 (50%), Positives = 98/147 (66%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHS 192
P+ D P K+ CRVI + LK E ++DE +A++TL+P+ Q + + P V+S
Sbjct: 126 PICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQV--VIPTQNQNQFRPL--VNS 181
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQ 372
F K LTASDTS HGGFSV ++HA ECLPPLDM++ PTQE++A DLHGN WRFRHI+RG
Sbjct: 182 FTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGT 241
Query: 373 PRKHLLQSGWNVFVTPXSXLLGMRLXF 453
++HLL GWN F T + G + F
Sbjct: 242 AQRHLLTIGWNAFTTSKKLVEGDVIVF 268
>gi|12322942|gb|AAG51458.1|AC069160_4 (AC069160) hypothetical protein
[Arabidopsis thaliana]
Length = 615
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 615
0 150 300 450 600
Plus Strand HSPs:
Score = 376 (132.4 bits), Expect = 3.4e-33, P = 3.4e-33
Identities = 74/147 (50%), Positives = 98/147 (66%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHS 192
P+ DLP K+ CRVI + LK E ++DE +A++TL+P+ Q + E R V+S
Sbjct: 70 PICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQSENQF----RPLVNS 125
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQ 372
F K LTASDTS +GGF V ++HA ECLPPLDM++ P QEL+AKDLHGN WRFRH +RG
Sbjct: 126 FTKVLTASDTSAYGGFFVPKKHAIECLPPLDMSQPLPAQELLAKDLHGNQWRFRHSYRGT 185
Query: 373 PRKHLLQSGWNVFVTPXSXLLGMRLXF 453
P++H L +GWN F T + G + F
Sbjct: 186 PQRHSLTTGWNEFTTSKKLVKGDVIVF 212
>gi|8778254|gb|AAF79263.1|AC023279_12 (AC023279) F12K21.26 [Arabidopsis
thaliana]
Length = 620
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 620
0 150 300 450 600
Plus Strand HSPs:
Score = 373 (131.3 bits), Expect = 7.6e-33, P = 7.6e-33
Identities = 73/147 (49%), Positives = 100/147 (68%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFH--V 186
P+ DLP K+ CRVI + LK E ++DE++A++TL+P+ Q + E RF V
Sbjct: 45 PICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSEN------RFRPLV 98
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
+SF K LTASDTS +GGFSV ++HA ECLPPLDM++ P QE++A DLH N WRFRH +R
Sbjct: 99 NSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYR 158
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
G P++H L +GWN F+T + G + F
Sbjct: 159 GTPQRHSLTTGWNEFITSKKLVKGDVIVF 187
>gi|12323856|gb|AAG51897.1|AC023913_5 (AC023913) auxin response factor,
putative; 32824-28369 [Arabidopsis thaliana]
Length = 620
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 620
0 150 300 450 600
Plus Strand HSPs:
Score = 373 (131.3 bits), Expect = 7.6e-33, P = 7.6e-33
Identities = 73/147 (49%), Positives = 100/147 (68%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFH--V 186
P+ DLP K+ CRVI + LK E ++DE++A++TL+P+ Q + E RF V
Sbjct: 82 PICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSEN------RFRPLV 135
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
+SF K LTASDTS +GGFSV ++HA ECLPPLDM++ P QE++A DLH N WRFRH +R
Sbjct: 136 NSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYR 195
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
G P++H L +GWN F+T + G + F
Sbjct: 196 GTPQRHSLTTGWNEFITSKKLVKGDVIVF 224
>gi|5091627|gb|AAD39615.1|AC007454_14 (AC007454) Similar to gb|AF082176 auxin
response factor 9 from Arabidopsis thaliana
Length = 619
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 619
0 150 300 450 600
Plus Strand HSPs:
Score = 369 (129.9 bits), Expect = 2.1e-32, P = 2.1e-32
Identities = 73/147 (49%), Positives = 96/147 (65%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHS 192
P+ DLP K+ CRVI + LK E ++DE +A++TL+P+ Q + E R V+S
Sbjct: 96 PICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RPLVNS 151
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQ 372
F K LTASDTS HGGF V ++HA ECLP LDM++ P QEL+A DLHGN WRF H +RG
Sbjct: 152 FTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGT 211
Query: 373 PRKHLLQSGWNVFVTPXSXLLGMRLXF 453
P++HLL +GWN F T + G + F
Sbjct: 212 PQRHLLTTGWNAFTTSKKLVAGDVIVF 238
>gi|12323853|gb|AAG51894.1|AC023913_2 (AC023913) auxin response factor,
putative; 53188-50111 [Arabidopsis thaliana]
Length = 600
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 600
0 150 300 450
Plus Strand HSPs:
Score = 367 (129.2 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 74/147 (50%), Positives = 97/147 (65%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHS 192
P+ DLP K+ CRVI + LK E ++DE +A++TL+P+ Q + E R V+S
Sbjct: 70 PICDLPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RPLVNS 125
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQ 372
F K LTASDTS GGF V ++HA ECLPPLDM++ PTQEL+A DLHGN WRF H +RG
Sbjct: 126 FTKVLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGT 183
Query: 373 PRKHLLQSGWNVFVTPXSXLLGMRLXF 453
P++HLL +GWN F T + G + F
Sbjct: 184 PQRHLLTTGWNAFTTSKKLVAGDVIVF 210
>gi|8778352|gb|AAF79360.1|AC007887_19 (AC007887) F15O4.42 [Arabidopsis
thaliana]
Length = 570
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 570
0 150 300 450
Plus Strand HSPs:
Score = 357 (125.7 bits), Expect = 2.8e-31, P = 2.8e-31
Identities = 72/147 (48%), Positives = 96/147 (65%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHS 192
P+ DLP K+ CRVI + LK E ++DE +A++TL+P+ Q + E R V+S
Sbjct: 70 PICDLPSKLQCRVIAIHLKVENNSDETYAKITLMPDTTQVVIPTQNENQF----RPLVNS 125
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQ 372
F K LTASD S +G FSV ++HA ECLPPLDM++ P QEL+A DLHGN W FRH +RG
Sbjct: 126 FTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYRGT 185
Query: 373 PRKHLLQSGWNVFVTPXSXLLGMRLXF 453
P++HLL +GWN F T + G + F
Sbjct: 186 PQRHLLTTGWNEFTTSKKLVKGDVIVF 212
>gi|4432846|gb|AAD20695.1| (AC006283) unknown protein [Arabidopsis thaliana]
>gi|12484203|gb|AAG54000.1|AF336919_1 (AF336919) ARF10 [Arabidopsis
thaliana]
Length = 693
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 693
0 150 300 450 600
Plus Strand HSPs:
Score = 342 (120.4 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 73/155 (47%), Positives = 97/155 (62%), Frame = +1
Query: 7 HMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQD---EN-AVEKEGPPAAPP 174
H P +PP ILCRV++V A+ +TDEVFA++TLLP P D EN AV PP++
Sbjct: 47 HAP--RVPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDG 104
Query: 175 RFHVH----SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNX 342
+ SF KTLT SD + GGFSV R A+ P LD + +PP Q ++AKD+HG
Sbjct: 105 NGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGET 164
Query: 343 WRFRHIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
W+FRHI+RG PR+HLL +GW+ FV + G + F
Sbjct: 165 WKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVF 201
>gi|6165644|gb|AAF04627.1|AF099735_1 (AF099735) auxin response factor 10
[Arabidopsis thaliana]
Length = 701
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 701
0 150 300 450 600
Plus Strand HSPs:
Score = 336 (118.3 bits), Expect = 1.4e-28, P = 1.4e-28
Identities = 73/155 (47%), Positives = 96/155 (61%), Frame = +1
Query: 7 HMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQD---EN-AVEKEGPPAAPP 174
H P +PP ILCRV++V A+ +TDEVFA++TLLP P D EN AV PP++
Sbjct: 47 HAP--RVPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDG 104
Query: 175 RFHVH----SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNX 342
+ SF KTLT SD + GGFSV R A+ P LD + +PP Q + AKD+HG
Sbjct: 105 NGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVNAKDIHGET 164
Query: 343 WRFRHIFRGQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
W+FRHI+RG PR+HLL +GW+ FV + G + F
Sbjct: 165 WKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVF 201
>gi|7484815|pir||T08984 auxin response factor 7 homolog F6G3.110 - Arabidopsis
thaliana >gi|4938484|emb|CAB43843.1| (AL078464) transcription
factor-like protein [Arabidopsis thaliana]
>gi|7269908|emb|CAB81001.1| (AL161576) transcription factor-like
protein [Arabidopsis thaliana]
Length = 653
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 653
0 150 300 450 600
Plus Strand HSPs:
Score = 305 (107.4 bits), Expect = 2.6e-25, P = 2.6e-25
Identities = 64/154 (41%), Positives = 94/154 (61%), Frame = +1
Query: 25 LPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKE-GPPAAPPRFHVHS--- 192
+PP +LCRV+ + A+ ++DEVFA++ L+P +D+ V+ E G F +S
Sbjct: 60 IPPMVLCRVLAIKYMADAESDEVFAKLRLIPL--KDDEYVDHEYGDGEDSNGFESNSEKT 117
Query: 193 --FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
F KTLT SD + GGFSV R A+ P LD +PP Q ++AKD+HG+ W+FRHI+R
Sbjct: 118 PSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYR 177
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF*GVKXGN 474
G PR+HLL +GW+ FV + G + F + G+
Sbjct: 178 GTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGD 213
>gi|8954059|gb|AAF82232.1|AC069143_8 (AC069143) Contains similarity to a
non-phototropic hypocotyl 4 (NPH4) protein from Arabidopsis
thaliana gb|AF186466
Length = 1062
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | || 1062
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 302 (106.3 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 70/148 (47%), Positives = 91/148 (61%), Frame = +1
Query: 10 MPVY-DLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHV 186
+P Y +LP K++C + +V L A+ +TDEV+AQ+TL P N + ++ P F
Sbjct: 64 IPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPV-----NKLNRQ-----PTEF-- 111
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
FCKTLTASDTSTHGGFSV RR A++ PPLD + QPP QE+VAKDLH W FRHI+R
Sbjct: 112 --FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYR 169
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
G W+VFV+ G + F
Sbjct: 170 G----------WSVFVSTKRLFAGDSVLF 188
>gi|8778678|gb|AAF79686.1|AC022314_27 (AC022314) F9C16.11 [Arabidopsis
thaliana]
Length = 330
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 330
0 150 300
Plus Strand HSPs:
Score = 283 (99.6 bits), Expect = 7.6e-24, P = 7.6e-24
Identities = 61/125 (48%), Positives = 81/125 (64%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFH--V 186
P DLP K+ CRVI + LK E ++DE + ++TL+P+ +N ++ P +F V
Sbjct: 47 PNCDLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTVSKN-LQVVIPTENENQFRPIV 105
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPL-----DMTKQPPTQELVAKDLHGNXWRF 351
+SF K LTASDTS G FSV +HA ECLPPL DM++ P QEL+A DLHGN WRF
Sbjct: 106 NSFTKVLTASDTSAQGEFSVPCKHAIECLPPLLFYFIDMSQPIPAQELIAIDLHGNQWRF 165
Query: 352 RHIFRG 369
+H +RG
Sbjct: 166 KHSYRG 171
>gi|2262117|gb|AAB63625.1| (AC002343) auxin inducible protein isolog
[Arabidopsis thaliana]
Length = 497
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 497
0 150 300 450
Plus Strand HSPs:
Score = 286 (100.7 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 56/96 (58%), Positives = 69/96 (71%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHS 192
P++ LPPKILC V+NV L+AE DTDEV+AQ+TL+P + + + + P R VHS
Sbjct: 91 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHS 150
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQP 300
F K LTASDTSTHGGFSVLR+HA ECLPPL +P
Sbjct: 151 FSKVLTASDTSTHGGFSVLRKHATECLPPLVHWDEP 186
>gi|12002301|gb|AAG43286.1|AF140228_1 (AF140228) auxin response factor 1 [Oryza
sativa]
Length = 255
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 255
0 50 100 150 200 250
Plus Strand HSPs:
Score = 254 (89.4 bits), Expect = 9.0e-21, P = 9.0e-21
Identities = 44/51 (86%), Positives = 49/51 (96%), Frame = +1
Query: 265 ECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQPRKHLLQSGWNVFVT 417
ECLPPLDM++QPPTQELVAKDLHG WRFRHIFRGQPR+HLLQSGW+VFV+
Sbjct: 1 ECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVS 51
>gi|12323297|gb|AAG51629.1|AC012193_11 (AC012193) putative auxin response
factor; 79762-82020 [Arabidopsis thaliana]
Length = 596
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 596
0 150 300 450
Plus Strand HSPs:
Score = 247 (86.9 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 56/141 (39%), Positives = 73/141 (51%), Frame = +1
Query: 43 CRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVE--KEG--PPAAPPRFHVHSFCKTLT 210
C + ++ L A+P TDEVFA + L P Q + G V +F K LT
Sbjct: 65 CIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILT 124
Query: 211 ASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQPRKHLL 390
SD + GGFSV R AD P L+ PP Q+L D+HG W FRHI+RG PR+HLL
Sbjct: 125 PSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLL 184
Query: 391 QSGWNVFVTPXSXLLGMRLXF 453
+GW+ FV + G + F
Sbjct: 185 TTGWSKFVNSKKLIAGDSVVF 205
>gi|6573757|gb|AAF17677.1|AC009243_4 (AC009243) F28K19.6 [Arabidopsis thaliana]
Length = 652
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 652
0 150 300 450 600
Plus Strand HSPs:
Score = 247 (86.9 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 56/141 (39%), Positives = 73/141 (51%), Frame = +1
Query: 43 CRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVE--KEG--PPAAPPRFHVHSFCKTLT 210
C + ++ L A+P TDEVFA + L P Q + G V +F K LT
Sbjct: 62 CIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILT 121
Query: 211 ASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQPRKHLL 390
SD + GGFSV R AD P L+ PP Q+L D+HG W FRHI+RG PR+HLL
Sbjct: 122 PSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLL 181
Query: 391 QSGWNVFVTPXSXLLGMRLXF 453
+GW+ FV + G + F
Sbjct: 182 TTGWSKFVNSKKLIAGDSVVF 202
>gi|10086460|gb|AAG12520.1|AC015446_1 (AC015446) Similar to Auxin response
factor 9 [Arabidopsis thaliana]
Length = 479
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 26/54 (48%), Positives = 37/54 (68%), Frame = +1
Query: 283 DMTKQPPTQELVAKDLHGNXWRFRHIFRGQPRKHLLQSG--WNVFVTPXSXLLG 438
DM++ TQ LVAKDL+G W F+H+FRG P++H+ SG W+VF T ++G
Sbjct: 102 DMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVG 155
Score = 110 (38.7 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 21/53 (39%), Positives = 35/53 (66%), Frame = +1
Query: 13 PVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPE------PNQDENAVEKE 153
P++DLP K+ CRV+ + K + +TDEV+AQ++L+P+ P +N V K+
Sbjct: 64 PIFDLPSKLRCRVVAIDRKVDKNTDEVYAQISLMPDTTDMSQPISTQNLVAKD 116
Score = 59 (20.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 14/34 (41%), Positives = 16/34 (47%), Frame = +3
Query: 381 TLAAKWLECFCYSXKLXAGDAFXFLRGEKXELPF 482
T W F + +L GD F LRGE EL F
Sbjct: 138 TSGGGW-SVFATTKRLIVGDIFVLLRGENGELRF 170
>gi|7485494|pir||T02200 hypothetical protein F14M4.30 - Arabidopsis thaliana
>gi|3522951|gb|AAC34233.1| (AC004411) putative RAV-like B3 domain
DNA-binding protein [Arabidopsis thaliana]
Length = 310
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.00025, P = 0.00025
Identities = 29/108 (26%), Positives = 52/108 (48%), Frame = +1
Query: 91 VFAQVTLLPEPNQDENA--VEKEGPPAAPPRFHVHSFCKTLTASDTSTHGGFSVLRRHAD 264
+ ++L + +++E E+EG R H+ F K +T SD + ++HA+
Sbjct: 1 MMTDLSLTRDEDEEEAKPLAEEEGAREVADREHM--FDKVVTPSDVGKLNRLVIPKQHAE 58
Query: 265 ECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQPRKHLLQSGWNVFV 414
P LD + L +DL G WRFR+ + + +++ GW+ FV
Sbjct: 59 RFFP-LDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFV 107
>gi|11358746|pir||T47989 RAV-like protein - Arabidopsis thaliana
>gi|6899895|emb|CAB71904.1| (AL138642) RAV-like protein
[Arabidopsis thaliana]
Length = 299
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 299
0 50 100 150 200 250
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.00098, P = 0.00097
Identities = 27/97 (27%), Positives = 45/97 (46%), Frame = +1
Query: 136 NAVEKEGP--PAAPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQ 309
N +KE P A+ H F K +T SD + ++HA+ P + T +
Sbjct: 2 NQEDKEKPIEEASSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNK 61
Query: 310 ELVA--KDLHGNXWRFRHIFRGQPRKHLLQSGWNVFV 414
L+ +D GN WRFR+ + + +++ GW+ FV
Sbjct: 62 GLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFV 98
>gi|6715649|gb|AAF26476.1|AC007323_17 (AC007323) T25K16.3 [Arabidopsis
thaliana]
Length = 358
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 358
0 150 300
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.0014, P = 0.0014
Identities = 24/82 (29%), Positives = 39/82 (47%), Frame = +1
Query: 169 PPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWR 348
PP H F K +T SD + ++HA+ P LD + L +D +G WR
Sbjct: 48 PPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWR 106
Query: 349 FRHIFRGQPRKHLLQSGWNVFV 414
FR+ + + +++ GW+ FV
Sbjct: 107 FRYSYWNSSQSYVMTKGWSRFV 128
>gi|7485392|pir||T01944 hypothetical protein F11O4.9 - Arabidopsis thaliana
>gi|3695373|gb|AAC62776.1| (AF096370) contains similarity to
Arabidopsis thaliana AP2 domain containing protein RAP2.8
(GB:AF003101) >gi|7268193|emb|CAB77720.1| (AL161492) putative
DNA-binding protein [Arabidopsis thaliana]
Length = 328
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 328
0 150 300
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.015, P = 0.015
Identities = 26/89 (29%), Positives = 40/89 (44%), Frame = +1
Query: 187 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 366
H F K LT SD + ++HA+ P D Q T L +D +G WRFR+ +
Sbjct: 29 HMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED--NQNGTV-LDFQDKNGKMWRFRYSYW 85
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
+ +++ GW+ FV G + F
Sbjct: 86 NSSQSYVMTKGWSRFVKEKKLFAGDTVSF 114
>gi|12321505|gb|AAG50808.1|AC079281_10 (AC079281) DNA-binding protein RAV2,
putative [Arabidopsis thaliana]
Length = 361
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 361
0 150 300
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.28, P = 0.25
Identities = 25/81 (30%), Positives = 41/81 (50%), Frame = +1
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTK----QP-PTQELVA--KDLHGNXWRF 351
F KT+T SD + ++HA++ P MT P PT+ ++ +D G WRF
Sbjct: 195 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRF 254
Query: 352 RHIFRGQPRKHLLQSGWNVFV 414
R+ + + ++L GW+ FV
Sbjct: 255 RYSYWNSSQSYVLTKGWSRFV 275
>gi|2281641|gb|AAC49774.1| (AF003101) AP2 domain containing protein RAP2.8
[Arabidopsis thaliana]
Length = 334
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 334
0 150 300
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.33, P = 0.28
Identities = 23/88 (26%), Positives = 43/88 (48%), Frame = +1
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVA--KDLHGNXWRFRHIFR 366
F K +T SD + ++HA++ P L T+ ++ +D++G WRFR+ +
Sbjct: 170 FEKAVTPSDVGKLNRLVIPKQHAEKHFP-LPSPSPAVTKGVLINFEDVNGKVWRFRYSYW 228
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
+ ++L GW+ FV + G + F
Sbjct: 229 NSSQSYVLTKGWSRFVKEKNLRAGDVVTF 257
>gi|11357264|pir||T51330 DNA binding protein RAV2 [imported] - Arabidopsis
thaliana >gi|3868859|dbj|BAA34251.1| (AB013887) RAV2 [Arabidopsis
thaliana] >gi|12323214|gb|AAG51586.1|AC011665_7 (AC011665) putative
DNA-binding protein (RAV2-like) [Arabidopsis thaliana]
>gi|12324134|gb|AAG52035.1|AC011914_5 (AC011914) RAV2; 17047-15989
[Arabidopsis thaliana]
Length = 352
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 352
0 150 300
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.36, P = 0.30
Identities = 23/88 (26%), Positives = 43/88 (48%), Frame = +1
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVA--KDLHGNXWRFRHIFR 366
F K +T SD + ++HA++ P L T+ ++ +D++G WRFR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKQHAEKHFP-LPSPSPAVTKGVLINFEDVNGKVWRFRYSYW 246
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
+ ++L GW+ FV + G + F
Sbjct: 247 NSSQSYVLTKGWSRFVKEKNLRAGDVVTF 275
>gi|7939559|dbj|BAA95760.1| (AB028607) RAV1 DNA-binding protein-like
[Arabidopsis thaliana]
Length = 333
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 333
0 150 300
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.60, P = 0.45
Identities = 24/89 (26%), Positives = 40/89 (44%), Frame = +1
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLP-PLDMTKQPPTQELVA-KDLHGNXWRFRHIFR 366
F KT+T SD + + A++ P PL L+ +D++G WRFR+ +
Sbjct: 183 FEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYW 242
Query: 367 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 453
+ ++L GW+ FV G + F
Sbjct: 243 NSSQSYVLTKGWSRFVKEKRLCAGDLISF 271
>gi|11357263|pir||T51329 DNA binding protein RAV1 [validated] - Arabidopsis
thaliana >gi|3868857|dbj|BAA34250.1| (AB013886) RAV1 [Arabidopsis
thaliana] >gi|9958065|gb|AAG09554.1|AC011810_13 (AC011810) DNA
binding protein RAV1 [Arabidopsis thaliana]
Length = 344
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 344
0 150 300
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.83, P = 0.56
Identities = 22/87 (25%), Positives = 38/87 (43%), Frame = +1
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQ 372
F K +T SD + + HA++ P L +D++G WRFR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 247
Query: 373 PRKHLLQSGWNVFVTPXSXLLGMRLXF 453
+ ++L GW+ FV + G + F
Sbjct: 248 SQSYVLTKGWSRFVKEKNLRAGDVVSF 274
>gi|4678220|gb|AAD26965.1|AC007135_2 (AC007135) putative RAV2-like DNA-binding
protein [Arabidopsis thaliana]
Length = 158
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 1.3, P = 0.72
Identities = 20/76 (26%), Positives = 34/76 (44%), Frame = +1
Query: 193 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVA--KDLHGNXWRFRHIFR 366
F K LT SD + ++HA+ P + L+ +D G WRFR+ +
Sbjct: 23 FEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW 82
Query: 367 GQPRKHLLQSGWNVFV 414
+ ++L GW+ +V
Sbjct: 83 NSSQSYVLTKGWSRYV 98
>gi|6670924|gb|AAF23071.1|AF068267_5 (AF068267) unknown [Streptomyces
coelicolor A3(2)]
Length = 61
Frame -2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Minus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.4, P = 0.77
Identities = 17/53 (32%), Positives = 22/53 (41%), Frame = -2
Query: 340 RSRADPWPPTPG*VAASSCPAEGGIHRHVASAPKTHRECSYQTPSAFYKTNAR 182
R AD PP P A S P I AP + +PSA +T++R
Sbjct: 5 RDAADRLPPVPAPFACSRLPRRTSIRSTTLVAPGASSATATSSPSALARTSSR 57
>gi|12724941|gb|AAK06003.1|AE006420_3 (AE006420) HYPOTHETICAL PROTEIN
[Lactococcus lactis subsp. lactis]
Length = 67
Frame 2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.4, P = 0.77
Identities = 16/46 (34%), Positives = 24/46 (52%), Frame = +2
Query: 302 LPRSWWPRICTGTXGDSGIFFGVNRVNTCCKVVGMFLLLXXAXCWG 439
L RS R+ GT G G +FG++R T V+ + ++L WG
Sbjct: 6 LKRSSSNRVIAGTVGGLGEYFGLSR--TVINVIRVLIVLGTFGSWG 49
WARNING: HSPs involving 9 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.341 0.148 0.505
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.351 0.154 0.577
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.325 0.141 0.457
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.150 0.532
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.143 0.492
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.147 0.493
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 160 155 10. 74 3 12 22 0.096 34
30 0.12 36
+2 0 160 154 10. 74 3 12 22 0.095 34
30 0.12 36
+1 0 160 155 10. 74 3 12 22 0.096 34
30 0.12 36
-1 0 160 156 10. 74 3 12 22 0.097 34
30 0.12 36
-2 0 160 154 10. 74 3 12 22 0.095 34
30 0.12 36
-3 0 160 154 10. 74 3 12 22 0.095 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 59
No. of states in DFA: 590 (58 KB)
Total size of DFA: 193 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 172.50u 1.17s 173.67t Elapsed: 00:00:29
Total cpu time: 172.55u 1.22s 173.77t Elapsed: 00:00:30
Start: Mon Oct 1 23:06:31 2001 End: Mon Oct 1 23:07:01 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000