| 5 proteins |
N | COG3701 | Type IV secretory pathway, TrbF components | Help |
|---|
229 letters
1123 = mll9605 (229) =
708 = mlr6403 (241) =
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mll9605
(229 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
mll9605 437 e-123
mlr6403 277 9e-75
CC2687 232 3e-61
XF2052 59 5e-09
XFa0043 53 4e-07
CC0036 29 5.7
ZserC 28 9.7
BH0001 28 9.7
Cj0169 28 9.7
# >mll9605
# Length = 229
#
# Score = 437 bits (1123), Expect = e-123
# Identities = 214/229 (93%), Positives = 214/229 (93%)
#
# Query: 1 MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMXXXXXXXXXXXXXXX 60
# MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAM
# Sbjct: 1 MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMALGSLILSAGLATSL 60
#
# Query: 61 VWQLGRGTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIIL 120
# VWQLGRGTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIIL
# Sbjct: 61 VWQLGRGTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIIL 120
#
# Query: 121 RQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWIERH 180
# RQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWIERH
# Sbjct: 121 RQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWIERH 180
#
# Query: 181 YENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ 229
# YENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ
# Sbjct: 181 YENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ 229
#
#
# >mlr6403
# Length = 241
#
# Score = 277 bits (708), Expect = 9e-75
# Identities = 125/225 (55%), Positives = 169/225 (74%)
#
# Query: 3 IFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMXXXXXXXXXXXXXXXVW 62
# +F+RP YGKT P TPYQKA Q+WDERIGS+RVQARNWR M VW
# Sbjct: 2 LFKRPIQRYGKTPEPVTPYQKAAQLWDERIGSSRVQARNWRFMALGCLTLAAGLSGGLVW 61
#
# Query: 63 QLGRGTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIILRQ 122
# Q + VVP+VV+VD G+A+A+APAI DY+P+D QIAWHL RF++ VRSV DP+++RQ
# Sbjct: 62 QSMQSRVVPYVVEVDGFGEARAVAPAIRDYEPSDAQIAWHLGRFIQNVRSVSTDPVLVRQ 121
#
# Query: 123 DWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWIERHYE 182
# +WL AYD+ TD+ A LN+YA+ NDPF ++G + V+V+++SV+RAS SSF+V W E+ +E
# Sbjct: 122 NWLSAYDFATDRAALFLNEYAKANDPFGQIGTRSVSVQVTSVVRASDSSFQVKWAEQVFE 181
#
# Query: 183 NGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREM 227
# G L+S RWTAILTIV + P++ ++LR NPLG+++NAI+WSRE+
# Sbjct: 182 RGSLASTTRWTAILTIVIRPPSNTDQLRNNPLGVFINAIDWSREL 226
#
#
# >CC2687
# Length = 254
#
# Score = 232 bits (591), Expect = 3e-61
# Identities = 109/223 (48%), Positives = 146/223 (64%)
#
# Query: 4 FRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMXXXXXXXXXXXXXXXVWQ 63
# F+R YG+T PETPYQKA Q+WD+RIG+AR QA NWR VWQ
# Sbjct: 3 FKRTPQRYGRTPEPETPYQKAGQLWDDRIGAARAQAHNWRLAFFGSLTLASVLAGGSVWQ 62
#
# Query: 64 LGRGTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIILRQD 123
# + + P+VV+VD LG+ +A+ PA DY+P D +A L FV VRS+ DP+I+RQ
# Sbjct: 63 SAQSRIEPYVVEVDRLGEVRAVGPAEQDYQPDDTVVAGQLRGFVTDVRSLSTDPVIVRQR 122
#
# Query: 124 WLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWIERHYEN 183
# WL AY +++G A L+ YAR NDPFS++G + V V++ SV+RASP+SF+V W ER +E
# Sbjct: 123 WLEAYALASERGDAFLDAYARANDPFSQIGSRSVLVQVISVLRASPTSFQVKWEERTFER 182
#
# Query: 184 GQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSRE 226
# G L+ ERWTAILT+V Q P L NPLG++V AI+W++E
# Sbjct: 183 GSLAKTERWTAILTLVRQKPKTRAELDRNPLGLFVEAIDWAQE 225
#
#
# >XF2052
# Length = 238
#
# Score = 58.9 bits (141), Expect = 5e-09
# Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 21/234 (8%)
#
# Query: 11 YGKTLRPET----PYQKAEQIWDERIGSARVQARNWRAMXXXXXXXXXXXXXXXVWQLGR 66
# +GK +P+T PY A + W+ +G ++ + + +
# Sbjct: 9 FGKKEKPDTNTVNPYLNARRSWNSHVGQVMQHSQVGIFVGLLGMLIALAAVGGMTYIGSQ 68
#
# Query: 67 GTVVPWVVQVDTLGQAQAIAPAIADYKPT----DPQIAWHLARFVEQVRSVPADPIILRQ 122
# +P V Q D G I+ D+ P D + A ++ F+ +R V D + +
# Sbjct: 69 SKFIPLVFQQD--GSGNTISMTRPDHIPEALVDDYRTA--VSDFITNIRLVTPDAELQHK 124
#
# Query: 123 DWLRAYDWTTDQGAAAL--NDY---ARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWI 177
# L+AY + A L N+Y + +PF+R + V+V++ SV++ S ++++ W
# Sbjct: 125 AVLKAYGYLVPNDPATLKTNEYLNGTKEANPFNRAANEMVSVDVKSVLQQSKDTWQIDWQ 184
#
# Query: 178 ER-HYENGQLSSAE-RWTAILTIVTQMPNDA--ERLRANPLGIYVNAINWSREM 227
# E +G L A A++TI + E++ NP I+V NWS+++
# Sbjct: 185 ETVRGRDGSLKGAPYMMRALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 238
#
#
# >XFa0043
# Length = 238
#
# Score = 52.8 bits (125), Expect = 4e-07
# Identities = 50/232 (21%), Positives = 93/232 (39%), Gaps = 17/232 (7%)
#
# Query: 11 YGKTLRPET----PYQKAEQIWDERIGSARVQARNWRAMXXXXXXXXXXXXXXXVWQLGR 66
# +G +P+T PY A + W+ +G ++ + + +
# Sbjct: 9 FGNKEKPDTNTANPYLNARRSWNSHVGQIMQHSQVGIFVGLLGMLIGLAAVGGMTYIGSQ 68
#
# Query: 67 GTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLA--RFVEQVRSVPADPIILRQDW 124
# +P V Q D G I+ D+ P + A F+ +R V D + +
# Sbjct: 69 SKFIPLVFQQD--GSGNTISMTRPDHIPEARVDDYRTAVSDFITNIRLVTPDAGLQHKAV 126
#
# Query: 125 LRAYDWTTDQGAAALNDYARVN-----DPFSRVGKQQVAVEISSVIRASPSSFRVAWIER 179
# L+ Y + A L +N +PF+R + V V++ SV++ S ++++ W E
# Sbjct: 127 LKTYGYLVPNDPATLKTKEYLNGTKETNPFNRAANEMVNVDVKSVLQQSKDTWQIDWQET 186
#
# Query: 180 -HYENGQLSSAE-RWTAILTIVTQMPNDA--ERLRANPLGIYVNAINWSREM 227
# +G L A A++TI + E++ NP I+V NWS+++
# Sbjct: 187 VRGRDGSLKGAPYMMRALVTIYQNKDTEVKPEKMLINPHFIFVKDYNWSKQL 238
#
#
# >CC0036
# Length = 310
#
# Score = 28.9 bits (63), Expect = 5.7
# Identities = 14/44 (31%), Positives = 23/44 (51%)
#
# Query: 90 ADYKPTDPQIAWHLARFVEQVRSVPADPIILRQDWLRAYDWTTD 133
# +D +PT Q+ L F+ +V +P + ++ D RAYD D
# Sbjct: 98 SDVRPTREQVEAALPAFIGEVDQIPPNFSAIKVDGERAYDLARD 141
#
#
# >ZserC
# Length = 362
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
#
# Query: 73 VVQVDTLGQAQAIAPAIADYK---------PTDPQIAWHLARFV 107
# +V+ D LG+A P+I DY T P AW+L+ V
# Sbjct: 209 IVREDLLGKANVACPSILDYSILNDNGSMFNTPPTFAWYLSGLV 252
#
#
# >BH0001
# Length = 449
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 9/25 (36%), Positives = 18/25 (72%)
#
# Query: 158 AVEISSVIRASPSSFRVAWIERHYE 182
# ++E S++I +P+ F W+E+HY+
# Sbjct: 35 SIEDSTIIITAPNEFARDWLEKHYD 59
#
#
# >Cj0169
# Length = 220
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 18/79 (22%), Positives = 34/79 (42%), Gaps = 5/79 (6%)
#
# Query: 75 QVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPA--DPIILRQDW---LRAYD 129
# +++ +G + A P D P W A +V+ + PA + +W +AY+
# Sbjct: 140 KLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199
#
# Query: 130 WTTDQGAAALNDYARVNDP 148
# W +G +++ YA P
# Sbjct: 200 WALKEGMGSVSFYANELHP 218
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.320 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,291,946
Number of Sequences: 108091
Number of extensions: 514442
Number of successful extensions: 1177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 9
length of query: 229
length of database: 33,061,072
effective HSP length: 102
effective length of query: 127
effective length of database: 22,035,790
effective search space: 2798545330
effective search space used: 2798545330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)