# cumulative hits at level: 4 from root 
# for bio.clean
regulation of GTPase activity	15
symbiotic interaction between host and other organism	67
urogenital system development	4
external encapsulating structure organization and biogenesis	76
alkaloid metabolism	51
ornithine metabolism	1
M phase	406
dorsal/ventral axis specification	11
negative regulation of lyase activity	2
oocyte axis determination	48
cyanate metabolism	3
cellular morphogenesis during conjugation	2
cellular macromolecule metabolism	3350
cellular osmoregulation	1
pregnancy	6
amine metabolism	605
female germ-line sex determination	3
branching morphogenesis	15
cellular morphogenesis during vegetative growth	1
hydrogen transport	117
retroviral genome replication	1
ciliary or flagellar motility	43
coumarin metabolism	1
one-carbon compound metabolism	79
macromolecule catabolism	1014
establishment and/or maintenance of cell polarity	31
muscle cell fate commitment	1
cell glucose homeostasis	2
alcohol metabolism	595
regulation of muscle contraction	2
retrograde transport, Golgi to ER	21
asymmetric protein localization	6
regulation of insulin receptor signaling pathway	7
regulation of immune response	20
regulation of photosynthesis, light reaction	57
positive regulation of cellular physiological process	120
regulation of root meristem size	1
leg disc pattern formation	3
regulation of dendrite morphogenesis	3
cellular lipid metabolism	387
positive regulation of cell growth	4
cell fate determination	19
gas transport	14
biopolymer catabolism	649
xenobiotic metabolism	108
intra-Golgi transport	33
transmission of nerve impulse	122
lung development	2
vitamin transport	1
cone cell fate commitment	4
protein transport	370
meiotic chromosome segregation	26
lymphocyte proliferation	1
DNA replication and chromosome cycle	11
B-cell differentiation	2
response to oxidative stress	161
mesoderm cell fate commitment	1
unidimensional cell growth	6
embryonic development (sensu Insecta)	15
response to herbicide	30
negative regulation of cellular physiological process	178
response to heat	171
organic acid transport	107
amino acid and derivative metabolism	712
regulation of cell organization and biogenesis	12
exocrine system development	4
sugar utilization	2
regional subdivision	18
response to abiotic stimulus	696
synapse organization and biogenesis	28
taxis	79
neurotransmitter metabolism	7
positive regulation of transferase activity	27
embryonic eye morphogenesis	8
cofactor transport	4
terpene metabolism	40
nuclear organization and biogenesis	22
eye photoreceptor cell differentiation	8
eye morphogenesis	38
blood vessel development	10
circadian sleep/wake cycle	11
negative regulation of metabolism	124
striated muscle contraction	43
photoreceptor cell differentiation (sensu Endopterygota)	41
acrosome formation	1
signal transduction during filamentous growth	16
drug metabolism	60
regulation of carbohydrate metabolism	10
regulation of neurotransmitter secretion	2
arachidonic acid secretion	2
organelle organization and biogenesis	706
centrosome cycle	22
cytokine metabolism	2
determination of bilateral symmetry	4
histolysis	83
regulation of timing of meristematic phase transition	9
cell migration	66
regulation of blood pressure	5
establishment of RNA localization	27
specification of organ identity	3
lymph gland development	3
arginine metabolism	16
establishment of protein localization	370
courtship behavior	16
homotypic vacuole fusion, non-autophagic	1
vitamin metabolism	143
cell-matrix adhesion	4
regulation of cell activation	13
regulation of biosynthesis	161
regulation of vasodilation	2
mating	1
response to DNA damage stimulus	294
regulation of catabolism	21
neurotransmitter transport	15
lymph gland hemocyte differentiation (sensu Arthropoda)	3
mating type switching and recombination	1
ossification	1
cellular response to starvation	8
cofactor metabolism	393
morphogenesis of embryonic epithelium	11
RNA-mediated posttranscriptional gene silencing	5
protein-ER targeting	18
cellular catabolism	1255
interphase	105
negative regulation of growth	12
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism	1256
intracellular signaling cascade	388
embryonic axis specification	24
cell-cell adhesion	7
imaginal disc morphogenesis	3
citrulline metabolism	2
response to external biotic stimulus	707
response to starvation	8
regulation of septation initiation signaling	1
SOS response	10
polysaccharide metabolism	236
phosphorus metabolism	730
protein metabolism	2672
cell ion homeostasis	84
monocyte differentiation	2
cytokinin mediated signaling	2
proximal/distal pattern formation, imaginal disc	3
response to dsRNA	2
translational machinery localization	1
response to wounding	547
hermaphrodite germ-line sex determination	1
vesicle-mediated transport	236
female somatic sex determination	2
macromolecule biosynthesis	1074
Malpighian tubule morphogenesis	2
development of primary male sexual characteristics	1
regulation of meristem size	1
blood vessel morphogenesis	10
regulation of phosphorus metabolism	6
microautophagy	2
DNA metabolism	631
negative regulation of cell differentiation	3
RNA metabolism	325
endomitotic cell cycle	1
regulation of cell shape	53
positive regulation of metabolism	41
ring canal formation	5
photoreceptor cell fate commitment	2
gastrulation	9
positive regulation of organismal physiological process	14
morphogenesis of larval imaginal disc epithelium	3
sporulation (sensu Fungi)	73
budding cell isotropic bud growth	3
carbohydrate metabolism	981
negative regulation of signal transduction	5
embryonic cleavage	3
regulation of protein secretion	4
ER to Golgi transport	43
heterocycle metabolism	187
cell recognition	6
operant conditioning	1
nitric oxide biosynthesis	12
regulation of membrane potential	3
response to hormone stimulus	92
asymmetric cell division	7
fertilization	12
regulation of nitrogen metabolism	4
response to carbohydrate stimulus	14
nitrogen fixation	53
cell redox homeostasis	32
response to pest, pathogen or parasite	672
response to water deprivation	32
morphogenesis of a polarized epithelium	7
lactation	3
organic acid metabolism	795
negative regulation of cell growth	6
lipid catabolism	59
replicative cell aging	15
regulation of transforming growth factor beta receptor signaling pathway	2
sulfur metabolism	181
cytoplasm organization and biogenesis	140
terpenoid metabolism	40
regulation of blood coagulation	10
biopolymer biosynthesis	100
aromatic compound metabolism	483
muscle development	43
lipid transport	75
sequestering of metal ion	9
gonad development	15
phenylpropanoid metabolism	216
regulation of epidermal growth factor receptor signaling pathway	4
abscisic acid mediated signaling	23
regulation of cell proliferation	77
nitrate metabolism	39
chromatin silencing	60
oocyte differentiation (sensu Insecta)	9
eclosion	5
photosynthesis light harvesting	310
pigment metabolism	37
development of primary female sexual characteristics	9
peptide transport	20
eye pigmentation (sensu Endopterygota)	3
immune cell activation	17
response to unfolded protein	250
ethylene mediated signaling pathway	44
progressive alteration of chromatin during cell aging	1
clathrin cage assembly	3
positive regulation of signal transduction	19
cytokine production	2
peptide hormone secretion	3
imaginal disc development	54
positive regulation of secretion	19
innate immune response	2
nitric oxide metabolism	12
regulation of myeloid blood cell differentiation	1
argininosuccinate metabolism	2
inflammatory response	475
cell projection organization and biogenesis	47
negative regulation of organismal physiological process	1
programmed cell death	440
poly(3-hydroxyalkanoate) metabolism	3
heart development	28
negative regulation of coagulation	10
tracheal system development (sensu Insecta)	32
polyol transport	14
fluid transport	39
cone cell differentiation (sensu Endopterygota)	4
negative regulation of transferase activity	15
defense response	901
flight behavior	31
hemopoiesis	34
sperm storage	1
post-Golgi transport	31
thymocyte differentiation	1
hemostasis	30
detection of external stimulus	126
regulation of programmed cell death	179
regulation of circadian sleep/wake cycle	11
intracellular mRNA localization	35
skeletal development	9
striated muscle cell differentiation	2
reductive pentose-phosphate cycle	91
imaginal disc metamorphosis	31
regulation of lymphocyte differentiation	12
maintenance of protein localization	8
ketone metabolism	20
synaptic vesicle exocytosis	2
regulation of muscle cell differentiation	2
mesoderm formation	1
antigen presentation	2
sister chromatid segregation	77
neuroblast proliferation	3
regulation of I-kappaB kinase/NF-kappaB cascade	18
age-dependent general metabolic decline	8
response to nutrients	6
immune cell mediated cytotoxicity	9
cytolysis	13
metabolic compound salvage	46
gametogenesis	275
cytokinesis	340
eye pigment metabolism	8
plasmid partitioning	1
cell surface receptor linked signal transduction	246
pseudohyphal growth	16
regulation of smoothened signaling pathway	1
nitrogen utilization	4
ER-overload response	3
ion transport	334
regulation of protein kinase activity	52
positive regulation of hydrolase activity	29
conjugation with cellular fusion	35
regulation of growth rate	1
inner cell mass cell proliferation	1
hormone metabolism	36
regulation of caspase activity	29
jump response	31
periodic partitioning	1
antigen processing	17
nitrogen compound biosynthesis	32
limb morphogenesis	7
viral protein processing	92
embryonic appendage morphogenesis	6
regulated secretory pathway	75
mitotic cell cycle	417
homoiothermy	2
siderophore transport	5
regulation of cell motility	8
regulation of blood vessel size	2
cellular biosynthesis	1907
amine transport	67
DNA protection	2
positive regulation of growth	4
meiotic cell cycle	167
nitrogen compound catabolism	3
anterior/posterior axis specification	50
regulation of neuron differentiation	14
sperm capacitation	1
primary sex determination, germ-line	2
embryonic development (sensu Vertebrata)	48
chronological cell aging	2
ectodermal gut morphogenesis	2
response to jasmonic acid stimulus	25
sperm axoneme assembly	37
histogenesis	71
anterior/posterior pattern formation, imaginal disc	1
regulation of protein metabolism	49
regulation of heart contraction rate	6
male genitalia morphogenesis	1
T-cell differentiation	12
carbohydrate transport	50
intracellular transport	472
loss of chromatin silencing	1
membrane organization and biogenesis	9
hemocyte development	7
budding cell apical bud growth	3
genitalia morphogenesis (sensu Endopterygota)	1
negative regulation of secretion	1
appendage morphogenesis (sensu Endopterygota)	8
photosynthetic electron transport	18
invasive growth (sensu Saccharomyces)	6
aldehyde metabolism	59
photoreceptor cell development	39
positive regulation of cell adhesion	2
regulation of JAK-STAT cascade	3
regulation of cell size	42
cellular defense response	8
olfactory learning	15
sensory perception	104
regulation of transport	44
associative learning	1
regulation of synaptic plasticity	15
regulation of cell cycle	292
bone resorption	9
regulation of hemocyte differentiation	1
chromosome movement towards spindle pole	3
lipid metabolism	484
nucleobase, nucleoside, nucleotide and nucleic acid transport	32
response to cold	30
response to osmotic stress	32
response to hypoxia	22
toxin metabolism	2
exocytosis	68
regulation of JNK cascade	2
oxygen and reactive oxygen species metabolism	201
regulation of circadian rhythm	11
gibberellic acid mediated signaling	12
generation of precursor metabolites and energy	1724
urea cycle	3
primary sex determination, soma	3
two-component signal transduction system (phosphorelay)	165
regulation of cell redox homeostasis	32
pole plasm RNA localization	31
sperm individualization	13
metaphase plate congression	2
carbon utilization by fixation of carbon dioxide	142
eclosion rhythm	5
regulation of adenylate cyclase activity	2
nucleobase, nucleoside, nucleotide and nucleic acid metabolism	2180
regulation of Wnt receptor signaling pathway	5
chromatin-mediated maintenance of transcription	4
killing of host cells	13
regulation of epithelial cell differentiation	6
cell budding	19
regulation of hormone secretion	17
peptide metabolism	2
viral assembly	3
positive regulation of lyase activity	2
humoral immune response	65
type II protein secretion system	1
positive regulation of cell differentiation	13
regulation of lipid metabolism	10
endoderm cell fate commitment	1
neurogenesis	207
attachment of spindle microtubules to kinetochore	4
regulation of body size	2
drug transport	23
regulation of cell volume	3