BLAST against gene transcripts
- Query sequence (201 nt): ACGGAGCCCCAGCCATTCTCAGCTGAGCTCTGGCCTTCAAGAGCACAATTCTGAACCTACTGGTAAGGCAGTGTGGCCCAGTACAGCTATTTCAGCACCAWGCATAGGCTCTCCAGGCTGTGGGAAGGATAACTATGATGAGCTTAAAAAAGAATTCAACAGACTTTATCAGAAGTATTGTCTGTCACCGCAGCGGGCGAA. The SNP site is represented in the BLAST search by an ambiguity symbol.
- Template sequence: NM_172505 (Mus musculus RIKEN cDNA A730008H23 gene (A730008H23Rik), mRNA.), version 4
- Protein change: yes (Cys463Ser)
- Click here to search for other known SNPs in NM_172505.
1 ggaaagaccctattagcgcgcggggcgccacgtctgatctgtggacgggctcgggcgggtgcagtgccgg
71 gcagagagccacgcacgccatggagtctatgggtcggcaggaccgcaggctgcagcagcagcttaatgaa
M E S M G R Q D R R L Q Q Q L N E
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
141 agcaggagccgcttccagacgttaatgaagcggctgatagcgaagtacaaccagccctttgaggacgacc
S R S R F Q T L M K R L I A K Y N Q P F E D D
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
211 cgttggtggagatgacgacgttgacctacgagacgccccaagggttgagagtttggggaggaaagctgat
P L V E M T T L T Y E T P Q G L R V W G G K L M
41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 6
281 gaagaaggaagacaaggaatacactcagaacgcagagaagagaggtggaaaagacacagtcatgacttgg
K K E D K E Y T Q N A E K R G G K D T V M T W
4 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87
351 gttccttccgtgacctcatctgtcacaccagcctctggatgccaggatgctatctctgcaaagagctctg
V P S V T S S V T P A S G C Q D A I S A K S S
88 89 90 91 92 93 94 95 96 97 98 99 101 103 105 107 109 1
100 102 104 106 108 110
421 gtggtcctggagtatctgctttgtcctctagaggccagggtccctcatacccttgcccagctgacatggc
G G P G V S A L S S R G Q G P S Y P C P A D M A
11 113 115 117 119 121 123 125 127 129 131 133
112 114 116 118 120 122 124 126 128 130 132 13
491 cattgtggctagaagtgatggcctctccttacttgggaccagcagcaacagcgtaagcagccagtccttt
I V A R S D G L S L L G T S S N S V S S Q S F
135 137 139 141 143 145 147 149 151 153 155 157
4 136 138 140 142 144 146 148 150 152 154 156
561 gaggttgatgacctttgcaatgtgacaatcagcaatttgtatgaaggcatgatgcattccatgagtaggc
E V D D L C N V T I S N L Y E G M M H S M S R
159 161 163 165 167 169 171 173 175 177 179 1
158 160 162 164 166 168 170 172 174 176 178 180
631 tgctgcgctcaaagctatcctgcatcatctccaccaagacctacatcaaccagagctggaagctccggag
L L R S K L S C I I S T K T Y I N Q S W K L R R
81 183 185 187 189 191 193 195 197 199 201 203
182 184 186 188 190 192 194 196 198 200 202 20
701 gagaccctcacgcaagcaggggctgcacaagaacaggacacactgcccccggagcaagccctcccagagg
R P S R K Q G L H K N R T H C P R S K P S Q R
205 207 209 211 213 215 217 219 221 223 225 227
4 206 208 210 212 214 216 218 220 222 224 226
771 agtgccaggaaggggcctgcatcctgctcagagcacgggaaagaggccggaatattaagagactacggga
S A R K G P A S C S E H G K E A G I L R D Y G
229 231 233 235 237 239 241 243 245 247 249 2
228 230 232 234 236 238 240 242 244 246 248 250
841 atttactgcacgttgctccccacaagacaggcttagaactgaaaagcgtttctcttgaaggaagcaaacg
N L L H V A P H K T G L E L K S V S L E G S K R
51 253 255 257 259 261 263 265 267 269 271 273
252 254 256 258 260 262 264 266 268 270 272 27
911 ccaagtccataaattcagtccagcttggaaggagctccagatgatgccgcagaaggacttggacttaaac
Q V H K F S P A W K E L Q M M P Q K D L D L N
275 277 279 281 283 285 287 289 291 293 295 297
4 276 278 280 282 284 286 288 290 292 294 296
981 cgtgagcgagaaaatagggggatgacattacagtggctaatttcacccgtcaaggtggttcccagaccaa
R E R E N R G M T L Q W L I S P V K V V P R P
299 301 303 305 307 309 311 313 315 317 319 3
298 300 302 304 306 308 310 312 314 316 318 320
1051 ggatgcttccaagtcaagtagagaagtggtatagagagattaaaatcaaatttgacaagcttcatcagga
R M L P S Q V E K W Y R E I K I K F D K L H Q E
21 323 325 327 329 331 333 335 337 339 341 343
322 324 326 328 330 332 334 336 338 340 342 34
1121 atattgcctgtcttctgggaaacagcctcgcctgactgaccccacagagtcttgggctgtcgatgtgtac
Y C L S S G K Q P R L T D P T E S W A V D V Y
345 347 349 351 353 355 357 359 361 363 365 367
4 346 348 350 352 354 356 358 360 362 364 366
1191 agaagtggttctaagagcccaggcagccgtcaggatgtagaaacctgcaggcccagttcacctttcggca
R S G S K S P G S R Q D V E T C R P S S P F G
369 371 373 375 377 379 381 383 385 387 389 3
368 370 372 374 376 378 380 382 384 386 388 390
1261 gagaaaagacagaaaggccaggtgaagctttagaagacctgaggggaaatggaaagtctgtcaaaacaaa
R E K T E R P G E A L E D L R G N G K S V K T K
91 393 395 397 399 401 403 405 407 409 411 413
392 394 396 398 400 402 404 406 408 410 412 41
acggagccccagccattctcagctg
|||||||||||||||||||||||||
1331 gagctgtcttctaaggagctgtccctctccagagggcagcccttcacggagccccagccattctcagctg
S C L L R S C P S P E G S P S R S P S H S Q L
415 417 419 421 423 425 427 429 431 433 435 437
4 416 418 420 422 424 426 428 430 432 434 436
agctctggccttcaagagcacaattctgaacctactggtaaggcagtgtggcccagtacagctatttcag
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1401 agctctggccttcaagagcacaattctgaacctactggtaaggcagtgtggcccagtacagctatttcag
S S G L Q E H N S E P T G K A V W P S T A I S
439 441 443 445 447 449 451 453 455 457 459 4
438 440 442 444 446 448 450 452 454 456 458 460
S
caccawgcataggctctccaggctgtgggaaggataactatgatgagcttaaaaaagaattcaacagact
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1471 caccatgcataggctctccaggctgtgggaaggataactatgatgagcttaaaaaagaattcaacagact
A P C I G S P G C G K D N Y D E L K K E F N R L
61 463 465 467 469 471 473 475 477 479 481 483
462 464 466 468 470 472 474 476 478 480 482 48
ttatcagaagtattgtctgtcaccgcagcgggcgaa
||||||||||||||||||||||||||||||||||||
1541 ttatcagaagtattgtctgtcaccgcagcgggcgaaggtgacttcgtgtggcagagtatcgccaatgaaa
Y Q K Y C L S P Q R A K V T S C G R V S P M K
485 487 489 491 493 495 497 499 501 503 505 507
4 486 488 490 492 494 496 498 500 502 504 506
1611 gctgctgcagctcttccctgtcaatcagagcacttgaagagactaaatccagactccccacaacagagtt
A A A A L P C Q S E H L K R L N P D S P Q Q S
509 511 513 515 517 519 521 523 525 527 529 5
508 510 512 514 516 518 520 522 524 526 528 530
1681 cccagaaacggtcaatctctcctggctgtcacagaagagtcctgcaggattcaactccacagactgctag
S Q K R S I S P G C H R R V L Q D S T P Q T A S
31 533 535 537 539 541 543 545 547 549 551 553
532 534 536 538 540 542 544 546 548 550 552 55
1751 tacacttgtgagagagccttggcttccaacaaagaggcgcaagttgtcatacccggtagcttgtgctcac
T L V R E P W L P T K R R K L S Y P V A C A H
555 557 559 561 563 565 567 569 571 573 575 577
4 556 558 560 562 564 566 568 570 572 574 576
1821 caggccaaatctcacaatacctcaggagcatcaggctggccctgagtgtcatgagtgctgattgggtgtt
Q A K S H N T S G A S G W P
579 581 583 585 587 589 591
578 580 582 584 586 588 590
1891 tgttggacatgatgcttatgtgtagtcagcagctgctttgagggagaagacctcggcagagacttttgtt
1961 tctccttttggaggacggtccccagggcatcctgtgtactgagcagtcttccactgcagctctctgtagc
2031 cacttggcctctgtccagccacctcccctgctccatatcacagcatcatctctgtcctttcttgtgggat
2101 gttggtaccttgggcttctctagccagtattggccattactgtgtctctttatcttattcaggggattct
2171 cagtggcagttttcctcttaacatgaattacttacagtgtctct
Questions, comments, and suggestions to: Michael Edmonson (edmonson@nih.gov) LPG, NCI
Last modified: Mon Dec 18 17:48:23 2006