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 |
| 10b |
 |
Phytophthora genus-specific primer - reverse
Phy-10b spans base 73-98 in the cox I gene
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| *
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| *
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| *
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| *
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| * |
| Beta vulgaris (X57693)
| G
| G
| A
| T
| A
| T
| A
| G
| G
| G
| A
| C
| T
| C
| T
| C
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Betula papyrifera (U77620)
| G
| G
| A
| T
| A
| T
| A
| G
| G
| G
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Chamaerops humilis (U77621)
| G
| G
| A
| T
| A
| T
| C
| G
| G
| T
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| A
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Glycine max (M16884)
| G
| G
| A
| T
| A
| T
| A
| G
| G
| G
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Lycopersicum esculentum (X54738)
| G
| G
| A
| T
| A
| T
| A
| G
| G
| G
| A
| C
| T
| C
| T
| T
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Magnolia stellata (U77622)
| G
| G
| A
| T
| A
| T
| A
| G
| G
| G
| A
| C
| T
| C
| T
| C
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Oryza sativa (X15990)
| G
| G
| A
| T
| A
| T
| C
| G
| G
| T
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| A
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Pisum sativum (X1440)
| G
| G
| A
| T
| A
| T
| A
| G
| G
| G
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Populus tremuloides (U77623)
| G
| G
| A
| T
| A
| T
| C
| G
| G
| T
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| C
| T
| C
| A
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Sabel palmetto (U77624)
| G
| G
| A
| T
| A
| T
| C
| G
| G
| T
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| C
| T
| C
| A
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Solanum tuberosum (AF096321)
| G
| G
| A
| T
| A
| T
| A
| G
| G
| G
| A
| C
| T
| C
| T
| T
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| T
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Triticum aestivum (Y00417)
| G
| G
| A
| T
| A
| T
| T
| G
| G
| G
| A
| C
| T
| C
| T
| C
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| A
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Zea mays (X02660)
| G
| G
| A
| T
| A
| T
| C
| G
| G
| T
| A
| C
| T
| C
| T
| A
| T
| A
| T
| T
| T
| C
| A
| T
| C
| T
| T
| C
| G
| G
| T
| G
| C
| C
| A
| T
| T
| G
| C
| A
| G
| G
| A
| G
| T
| G
| A
| T
| G
| G |
| Chondrus crispus (Z47547)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| T
| A
| C
| T
| C
| T
| T
| T
| A
| T
| C
| T
| A
| A
| T
| T
| T
| T
| C
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| A
| G
| G
| T
| G
| T
| T
| T
| T
| A
| G |
| Py. aphanidermatum (1992-31)
| A
| G
| A
| T
| A
| T
| C
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| A
| G
| G
| T
| G
| T
| A
| G
| T
| T
| G |
| Py. aphanidermatum (1991-3)
| A
| G
| A
| T
| A
| T
| C
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| A
| G
| G
| T
| G
| T
| A
| G
| T
| T
| G |
| Py. deliense (1986-19)
| A
| G
| A
| T
| A
| T
| A
| G
| G
| T
| A
| C
| A
| T
| T
| A
| T
| A
| C
| T
| T
| A
| A
| T
| T
| T
| T
| T
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| A
| G
| G
| T
| G
| T
| A
| G
| T
| T
| G |
| Py. irregulare (1987-97)
| A
| G
| A
| C
| A
| T
| A
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| A
| G
| G
| T
| G
| T
| A
| G
| T
| A
| G |
| Py. oligandrum (1986-41)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| C
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| A
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Py. ultimum (1987-92)
| A
| G
| A
| C
| A
| T
| T
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| A
| G
| G
| T
| G
| T
| A
| G
| T
| T
| G |
| Py. ultimum spor. (1993-26)
| A
| G
| A
| C
| A
| T
| A
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| G
| G
| T
| G
| C
| T
| T
| T
| T
| T
| C
| T
| G
| G
| T
| G
| T
| A
| G
| T
| T
| G |
| Ph. cactorum (385)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. capsici (302)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| G
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. colocasiae (345)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| G
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. erythroseptica (366)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| G
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| G
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. fragariae frag. (394)
| A
| G
| A
| T
| A
| T
| C
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| G
| G
| G
| T
| A
| T
| T
| G
| T
| T
| G |
| Ph. gonapodyides (393)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| A
| T
| T
| G
| T
| T
| G |
| Ph. hibernalis (338)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| A
| T
| T
| G
| T
| T
| G |
| Ph. ilicis (344)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| G
| T
| T
| G
| T
| A
| G |
| Ph. infestans (580)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. megasperma (L04457)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| T
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| A
| T
| T
| G
| T
| T
| G |
| Ph. mirabilis (340)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. nicotianiae (332)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| G
| T
| T
| G
| T
| A
| G |
| Ph. phaseoli (330)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. pseudotsugae (308)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| G
| T
| T
| G
| T
| T
| G |
| Ph. ramorum (ph016)
| A
| G
| A
| T
| A
| T
| T
| G
| G
| A
| A
| C
| T
| T
| T
| A
| T
| A
| T
| T
| T
| A
| A
| T
| T
| T
| T
| T
| A
| G
| T
| G
| C
| T
| T
| T
| T
| G
| C
| T
| G
| G
| T
| A
| T
| T
| G
| T
| T
| G |
| FMPhy-10 (reverse)
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| A
| A
| A
| T
| A
| T
| A
| A
| A
| T
| T
| A
| A
| A
| A
| A
| T
| C
| A
| C
| G
| A
| A
| A
| A
| C
| G
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| - |
| FMPhy-10b (reverse)
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| -
| A
| A
| T
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Last Modified: 03/16/2006
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