proteins
| 48 proteins |
L | COG0632 | Holliday junction resolvasome, DNA-binding subunit | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Mycobacterium leprae (Actinomycetales | Actinobacteria (class)) | ||||
| ML0482 | ||||
203 letters 0
0 971 = |||ML0482 (203) = 0
-1 397 = |||Cgl1621 (206) = 0
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ML0482
(203 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
ML0482 378 e-105
Rv2593c 279 3e-75
MT2670 279 3e-75
Cgl1621 157 1e-38
RSc0501 118 8e-27
DR1274 117 1e-26
L0266 113 2e-25
NMA2221 103 3e-22
ECs2571 103 3e-22
BMEI0333 100 2e-21
BH1224 99 6e-21
HI0313 96 4e-20
BS_ruvA 96 7e-20
CC3237 95 1e-19
AGl2223 87 2e-17
CAC2285 84 2e-16
BB0023 70 2e-12
PA3562_3 33 0.42
ML1996_1 33 0.54
BMEI0575 32 0.92
RSc3295_1 32 0.92
PA3456_1 32 0.92
PA3327_1 31 1.6
DR1087 30 3.5
SA1766_1 30 4.6
BH2496 29 6.0
AGc541 29 6.0
# >ML0482
# Length = 203
#
# Score = 378 bits (971), Expect = e-105
# Identities = 203/203 (100%), Positives = 203/203 (100%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY
# Sbjct: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA
# Sbjct: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
#
# Query: 121 ERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL 180
# ERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL
# Sbjct: 121 ERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL 180
#
# Query: 181 GKDGAVATSSALRAALSLLGKTR 203
# GKDGAVATSSALRAALSLLGKTR
# Sbjct: 181 GKDGAVATSSALRAALSLLGKTR 203
#
#
# >Rv2593c
# Length = 196
#
# Score = 279 bits (714), Expect = 3e-75
# Identities = 156/203 (76%), Positives = 171/203 (83%), Gaps = 7/203 (3%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MI SVRGEVLEVALDH VIEAAG+GYRVNATP+ LATLRQG++ARL+TAM+VREDSMTLY
# Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GF D E RDLFL LLSVSGVGPRLAMA LAVHDA ALRQ LAD +VA+LTRVPGIGKRGA
# Sbjct: 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
#
# Query: 121 ERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL 180
# ER+VLELRDKVG V A+G + T +G+AVR VVEALVGLGFAAKQAEEATD V L
# Sbjct: 121 ERMVLELRDKVG-VAATGGALST--NGHAVRSPVVEALVGLGFAAKQAEEATDTV----L 173
#
# Query: 181 GKDGAVATSSALRAALSLLGKTR 203
# + TSSALR+ALSLLGK R
# Sbjct: 174 AANHDATTSSALRSALSLLGKAR 196
#
#
# >MT2670
# Length = 196
#
# Score = 279 bits (714), Expect = 3e-75
# Identities = 156/203 (76%), Positives = 171/203 (83%), Gaps = 7/203 (3%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MI SVRGEVLEVALDH VIEAAG+GYRVNATP+ LATLRQG++ARL+TAM+VREDSMTLY
# Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GF D E RDLFL LLSVSGVGPRLAMA LAVHDA ALRQ LAD +VA+LTRVPGIGKRGA
# Sbjct: 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
#
# Query: 121 ERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL 180
# ER+VLELRDKVG V A+G + T +G+AVR VVEALVGLGFAAKQAEEATD V L
# Sbjct: 121 ERMVLELRDKVG-VAATGGALST--NGHAVRSPVVEALVGLGFAAKQAEEATDTV----L 173
#
# Query: 181 GKDGAVATSSALRAALSLLGKTR 203
# + TSSALR+ALSLLGK R
# Sbjct: 174 AANHDATTSSALRSALSLLGKAR 196
#
#
# >Cgl1621
# Length = 206
#
# Score = 157 bits (397), Expect = 1e-38
# Identities = 93/207 (44%), Positives = 132/207 (62%), Gaps = 12/207 (5%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MI S+RG V+ + L AVIE G+GY V TP+ L+ L +G +A ++T MVVRED+M LY
# Sbjct: 1 MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVRGEEALVLTTMVVREDAMKLY 60
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GF D E+R++F L +VSG+GPRLA+A +V + QA+ ++D +L RVPG+GKR A
# Sbjct: 61 GFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKTLQRVPGVGKRMA 120
#
# Query: 121 ERIVLELRDKVGPVGASGLTVG----TAADGNAVRGSVVE----ALVGLGFAAKQAEEAT 172
# +R+++EL+ KV A + G + + N VVE ALVGLGF+ KQ+++A
# Sbjct: 121 DRLIVELKGKVAAFAAGVVDEGGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDAV 180
#
# Query: 173 DQVLDGELGKDGAVATSSALRAALSLL 199
# V L D ++ TS ALRAAL+ L
# Sbjct: 181 SFV----LAADPSLDTSGALRAALAKL 203
#
#
# >RSc0501
# Length = 193
#
# Score = 118 bits (296), Expect = 8e-27
# Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 17/205 (8%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-RQGSQARLVTAMVVREDSMTL 59
# MI + G ++E H +++ G+GY ++ S L G + L+T +VRED+ L
# Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVALLTQQIVREDAHLL 60
#
# Query: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119
# YGF A R+ F L+ +SG+G R+A+A L+ A L QA+ + LTR+PGIGK+
# Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120
#
# Query: 120 AERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVE---ALVGLGFAAKQAEEATDQVL 176
# AER++LEL+ K+ G +GT G AV V+ AL+ LG++ K+A +A QV
# Sbjct: 121 AERLLLELKGKL------GADLGTVPGGPAVSDDAVDVLNALLALGYSDKEAAQAIKQVP 174
#
# Query: 177 DGELGKDGAVATSSALRAALSLLGK 201
# G S ++ AL L K
# Sbjct: 175 AG-------TGVSEGIKLALKALSK 192
#
#
# >DR1274
# Length = 201
#
# Score = 117 bits (294), Expect = 1e-26
# Identities = 79/205 (38%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MI + G V EV AV+ A G+GY V LA L+ G A T +VRED+ L+
# Sbjct: 1 MIAYLSGVVREVREGSAVVVAGGVGYEVQCPAGMLARLKPGEAAEFSTRFIVREDAQLLF 60
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GF DA++ LF L SVSGVGP+L +A L+ +AL L DV L+ V G+GK+ A
# Sbjct: 61 GFPDADHLKLFDLLTSVSGVGPKLGLALLSAMPVSALAAGLIGGDVKLLSSVSGVGKKTA 120
#
# Query: 121 ERIVLELRDKVGPVGASGLTVGTAADGNAVRGS------VVEALVGLGFAAKQAEEATDQ 174
# ER+ LEL KV P + G A R S V+AL+ LGF Q A +
# Sbjct: 121 ERLALELSSKV-PEHLAAAASGAAGGKRPARVSSTAGHDAVDALLALGFREAQVRAAVAE 179
#
# Query: 175 VLDGELGKDGAVATSSALRAALSLL 199
# + LG D + + +R AL L
# Sbjct: 180 L----LGADPEASADTLIRKALGRL 200
#
#
# >L0266
# Length = 197
#
# Score = 113 bits (283), Expect = 2e-25
# Identities = 69/201 (34%), Positives = 120/201 (59%), Gaps = 12/201 (5%)
#
# Query: 5 VRGEVLEVALDHAVIEAAGIGYRVN-ATPSALATLRQGSQARLVTAMVVREDSMTLYGFS 63
# + G++++++ + VI+ AGIGY ++ A P A + L ++ ++ V+RED+ +LYGF
# Sbjct: 5 LNGKLVKISPTNIVIDVAGIGYLISVANPYAWSAL-MNTEVKIYVHQVIREDAHSLYGFV 63
#
# Query: 64 DAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGAERI 123
# + + LFL L+SVSG+GP+ A+A +A D L A+ +SD+ LT+ PG+GK+ A ++
# Sbjct: 64 NEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQM 123
#
# Query: 124 VLELR---DKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL 180
# VL+L D G VG S L G A GN +EAL LG+ A + ++ ++ +L
# Sbjct: 124 VLDLAGKFDATGTVGISLLDAGPA--GNLALEEAIEALQALGYKATELKK-----IEKKL 176
#
# Query: 181 GKDGAVATSSALRAALSLLGK 201
# ++ + + +++AL L+ K
# Sbjct: 177 AQETGLTSEEYIKSALKLMMK 197
#
#
# >NMA2221
# Length = 194
#
# Score = 103 bits (257), Expect = 3e-22
# Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 7/197 (3%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQ-GSQARLVTAMVVREDSMTL 59
# MI + G+++E VI+ G+GY + + L G +L T +++RED+ L
# Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60
#
# Query: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119
# +GF+ AE R F L+ V G+G + A+ L+ A L QA+A+ DV L+ PGIGK+
# Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120
#
# Query: 120 AERIVLELRDKVGPVGASGLTVG--TAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLD 177
# AER+VLELR G + A +T G AA +V L+ LG++ ++A+ A V +
# Sbjct: 121 AERMVLELR---GKLVAHAVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAAVKGVPE 177
#
# Query: 178 G-ELGKDGAVATSSALR 193
# G ++G+ +A + L+
# Sbjct: 178 GTDVGEGVRLALKNLLK 194
#
#
# >ECs2571
# Length = 203
#
# Score = 103 bits (256), Expect = 3e-22
# Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 11/205 (5%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLV-TAMVVREDSMTL 59
# MI +RG ++E +IE G+GY V+ + L + Q +V T VVRED+ L
# Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60
#
# Query: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119
# YGF++ + R LF L+ +GVGP+LA+A L+ A A+ +V +L ++PGIGK+
# Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120
#
# Query: 120 AERIVLELRDK--------VGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEA 171
# AER+++E++D+ P LT + + V ALV LG+ ++A
# Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180
#
# Query: 172 TDQVLDGELGKDGAVATSSALRAAL 196
# ++ + + + ALRAAL
# Sbjct: 181 VSKIARPDASSETLI--REALRAAL 203
#
#
# >BMEI0333
# Length = 205
#
# Score = 100 bits (250), Expect = 2e-21
# Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 7/183 (3%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLR-QGSQARLVTAMVVREDSMTL 59
# MI ++G + E+A DHAVI+ G+GY + L L G A L VRED + L
# Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60
#
# Query: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119
# YGF+ R+ F L +V GVG ++A+A L + L A+A D+A ++R PG+GK+
# Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120
#
# Query: 120 AERIVLELRDKVGP-VGASGLTVGT-----AADGNAVRGSVVEALVGLGFAAKQAEEATD 173
# AERIV EL++K G + T+G A A V AL LG++ QA A
# Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGLKQELGAGAAPAPVADAVSALSNLGYSRDQAANAVA 180
#
# Query: 174 QVL 176
# L
# Sbjct: 181 AAL 183
#
#
# >BH1224
# Length = 203
#
# Score = 99.0 bits (245), Expect = 6e-21
# Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 13/206 (6%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MI +RG + ++ +AV+E G+GY+V + S + T VRED + LY
# Sbjct: 1 MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCPNPYEFEKERDSVITIYTFQYVREDVIRLY 60
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GF E R LF LL+VSG+GP+ A+A LA + QA+ + D A L + PG+GK+ A
# Sbjct: 61 GFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKTA 120
#
# Query: 121 ERIVLELRDKVGPVGASGLTVGTAA-------DGNAVRGSVVEALVGLGFAAKQAEEATD 173
# +I+L+L+ KV + + DGN +EAL LG+ K+ ++
# Sbjct: 121 RQIILDLKGKVDELHPGLFSQKEEQPKPHEKNDGNQALDEAMEALKALGYVEKELKKVKP 180
#
# Query: 174 QVLDGELGKDGAVATSSALRAALSLL 199
# ++ + + T + ++ AL L+
# Sbjct: 181 KL------EQETLTTDAYIKKALQLM 200
#
#
# >HI0313
# Length = 204
#
# Score = 96.3 bits (238), Expect = 4e-20
# Identities = 61/206 (29%), Positives = 106/206 (50%), Gaps = 12/206 (5%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQ-GSQARLVTAMVVREDSMTL 59
# MI ++G +LE ++ G+GY + ++ L + G + L T +VVRED+ L
# Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60
#
# Query: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119
# +GF+ +R LF L+ +GVGP+LA+A L+ A+ +++ LT++PG+GK+
# Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120
#
# Query: 120 AERIVLELRDKVGPVGASG---------LTVGTAADGNAVRGSVVEALVGLGFAAKQAEE 170
# AER+++EL+ K V S L+ + + + AL+ LG+ +AE+
# Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180
#
# Query: 171 ATDQVLDGELGKDGAVATSSALRAAL 196
# +V EL + + AL+ AL
# Sbjct: 181 MVKRVAKPELTSEQVI--REALKVAL 204
#
#
# >BS_ruvA
# Length = 201
#
# Score = 95.5 bits (236), Expect = 7e-20
# Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 26/214 (12%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MI V+G + V+ + VIE GIGY++ TP+ ++ SQ + T +RED+ +LY
# Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQI-FTPNPFI-YKERSQETIFTYHHIREDAFSLY 58
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GFS E + LF LL+V+G+GP+ A+A L D A+ QA+ + D A L + PG+GK+ A
# Sbjct: 59 GFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTA 118
#
# Query: 121 ERIVLELRDKVGPVGASGL-------------TVGTAADGNAVRGSVVEALVGLGFAAKQ 167
# +I+L+L+ K+ V + T TA + +EAL LG+A K+
# Sbjct: 119 RQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALE------EALEALRVLGYAEKE 172
#
# Query: 168 AEEATDQVLDGELGKDGAVATSSALRAALSLLGK 201
# ++ L E+G + T ++ AL L K
# Sbjct: 173 IKKVLPH-LKEEIG----LTTDQYVKKALQKLLK 201
#
#
# >CC3237
# Length = 205
#
# Score = 94.7 bits (234), Expect = 1e-19
# Identities = 74/208 (35%), Positives = 103/208 (48%), Gaps = 10/208 (4%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARL--VTAMVVREDSMT 58
# MI +RG V EV + A+I+ G+GY V L L + L + + +
# Sbjct: 1 MIGRLRGAVAEVGEEEALIDVMGVGYLVRCGHRTLQRLPALGEETLLHIESQWSESAGLR 60
#
# Query: 59 LYGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKR 118
# LYGF E+R F+ L ++ GVGP+ AMA L V A L A+A D A++ R G+G +
# Sbjct: 61 LYGFLTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRANGVGPK 120
#
# Query: 119 GAERIVLELRDKV---GPVGASGLT--VGTAADGNAVRGSVVEALVGLGFAAKQAEEATD 173
# A RIV EL+DK GPV S T +A A G V AL+GLG A A +
# Sbjct: 121 LALRIVTELKDKPITDGPVLMSAPTSSAPSAPAKPAPTGDAVAALMGLGVAEVNARRVVE 180
#
# Query: 174 QVLDGELGKDGAVATSSALRAALSLLGK 201
# ELG++ V + ++A L LG+
# Sbjct: 181 AAA-AELGEEATV--QALIKAGLKELGR 205
#
#
# >AGl2223
# Length = 205
#
# Score = 87.4 bits (215), Expect = 2e-17
# Identities = 61/193 (31%), Positives = 95/193 (48%), Gaps = 8/193 (4%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQ-GSQARLVTAMVVREDSMTL 59
# MI ++G + E+ D+ +++ G+ Y + L+ + G L VRED + L
# Sbjct: 1 MIGKLKGSIEEIGADYVLVDVHGVCYVAYCSARTLSKIGSVGEAVVLFIETYVREDQLKL 60
#
# Query: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119
# +GF A R+ F L SV GVG ++A+A L+ + L A+A D ++R PGIG +
# Sbjct: 61 FGFVSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKTMISRAPGIGPKV 120
#
# Query: 120 AERIVLELRDKVGP-VGASGLTVGTAAD-----GNAVRGSVVEALVGLGFAAKQAEEATD 173
# A R+V ELR+K G + ++G + +A V AL LG++ QA A
# Sbjct: 121 AVRLVTELRNKAPAFAGDASASIGLKQELGEGVASAPVADAVSALTNLGYSRDQAANAVA 180
#
# Query: 174 QVL-DGELGKDGA 185
# L +G G D A
# Sbjct: 181 AALKNGGEGGDSA 193
#
#
# >CAC2285
# Length = 201
#
# Score = 84.0 bits (206), Expect = 2e-16
# Identities = 48/179 (26%), Positives = 98/179 (53%), Gaps = 9/179 (5%)
#
# Query: 5 VRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLV-TAMVVREDSMTLYGFS 63
# ++G+ + + D+ +++ G+GY++ + + +A + + + L+ +VR+D + LYGF
# Sbjct: 5 IKGKYIGINKDYIIVDNNGVGYKIFTSGNTMANMPKPEEDVLIYLTQIVRQDFIGLYGFL 64
#
# Query: 64 DAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGAERI 123
# + ++F LL+++GVG + +++ L++ L+ A+ D ++ + PGIGK+ A+RI
# Sbjct: 65 TKDELEMFNKLLTINGVGAKASLSLLSICTVNNLKYAIITGDEKTIVKAPGIGKKTAQRI 124
#
# Query: 124 VLELRDKV-------GPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQV 175
# +LEL+DK G + L V + V AL LG++ K+ + A + V
# Sbjct: 125 ILELKDKFKSTDISKGNSEINNLDVDYDEHSKKLE-EVRFALNSLGYSEKETDRAINNV 182
#
#
# >BB0023
# Length = 197
#
# Score = 70.5 bits (171), Expect = 2e-12
# Identities = 37/131 (28%), Positives = 70/131 (53%)
#
# Query: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
# MI + G+V+E V+ + + + LA + L T + RE+ + L+
# Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANFNLSDKVELFTYLYTRENELKLF 60
#
# Query: 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
# GF +++ R++F L+ VSGVGPR A+ L+ ++A+ D+ ++++ GIGK+ A
# Sbjct: 61 GFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKMA 120
#
# Query: 121 ERIVLELRDKV 131
# ++ L L+ K+
# Sbjct: 121 GKMFLHLQGKL 131
#
#
# >PA3562_3
# Length = 554
#
# Score = 33.1 bits (74), Expect = 0.42
# Identities = 33/107 (30%), Positives = 44/107 (40%), Gaps = 15/107 (14%)
#
# Query: 90 AVHDAAALRQA--LADSDVASLTRVPGI-GKRGAERIVLELRDKVGPVGASGLTVGTAAD 146
# A+HDA +A L D L R+ G+ R E+ + + D+VGP + L A
# Sbjct: 109 ALHDALLAERAADLRDLGRRVLARLCGVEAPREPEQPYILVMDEVGPSDVARLDAQRVAG 168
#
# Query: 147 GNAVRGSV------------VEALVGLGFAAKQAEEATDQVLDGELG 181
# RG + ALVG G A E T +LDGE G
# Sbjct: 169 ILTARGGATSHSAIIARALGIPALVGAGAAVLGLEPGTALLLDGEHG 215
#
#
# >ML1996_1
# Length = 418
#
# Score = 32.7 bits (73), Expect = 0.54
# Identities = 42/137 (30%), Positives = 59/137 (42%), Gaps = 14/137 (10%)
#
# Query: 69 DLFLALLSVSGVGPRLAMATLAVH-------DAAALRQAL---ADSDVASLTRVPGIGKR 118
# D+F + V G R+ LA H + +RQAL A++ T+V +R
# Sbjct: 137 DVFTHHILVDGGAIRIIEENLAHHLDTDNRLEIPCIRQALDKLAEAHRREATKVEESLQR 196
#
# Query: 119 GAERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALV--GLGFAAKQAEEATDQVL 176
# A + EL D+V G V A GNA RG + E+++ G F A T QV
# Sbjct: 197 LANVVQRELADEVRNGGYG--QVSNDAPGNAARGVLHESMIICGKAFDNIIALSETKQVP 254
#
# Query: 177 DGELGKDGAVATSSALR 193
# L AVA ++LR
# Sbjct: 255 LNILVATAAVAVDASLR 271
#
#
# >BMEI0575
# Length = 481
#
# Score = 32.0 bits (71), Expect = 0.92
# Identities = 20/48 (41%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
#
# Query: 154 VVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALSLLGK 201
# V+EAL+ LG AA+ +A + G +GK T ALR LS +GK
# Sbjct: 96 VLEALIRLGIAARARSKAQIIAVTGSVGK---TTTKEALRHVLSDVGK 140
#
#
# >RSc3295_1
# Length = 471
#
# Score = 32.0 bits (71), Expect = 0.92
# Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
#
# Query: 63 SDAENRDLFLALLSVSGVGPRLA-------MATLAVHDAAALRQALADSDVASLTRVPGI 115
# +DA + F LL G G L T AVH A L +A +D+ +LT +
# Sbjct: 222 ADAAKHNAFGVLLQYPGTGGALLGGLSTYQALTDAVHAAGGL--VVAAADLLALTLLAAP 279
#
# Query: 116 GKRGAERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALVGL 161
# G+ GA+ ++ + P G G G A +A + S+ LVG+
# Sbjct: 280 GEWGADVVIGNTQRFGVPFGFGGPHAGYMAVRDAFKRSMPGRLVGV 325
#
#
# >PA3456_1
# Length = 280
#
# Score = 32.0 bits (71), Expect = 0.92
# Identities = 24/83 (28%), Positives = 40/83 (47%), Gaps = 2/83 (2%)
#
# Query: 37 TLRQGSQARLVTAMVVREDSMTLYGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAA 96
# TL G + + R D+ L GF+ A+N D++ +L ATL +A
# Sbjct: 145 TLLLGDALECLPQLDARVDAWFLDGFAPAKNPDMWSPVLFAELARLSAPQATLGTFTSAG 204
#
# Query: 97 -LRQALADSDVASLTRVPGIGKR 118
# +R+ L ++ A + RVPG G++
# Sbjct: 205 FVRRGLVEAGFA-MQRVPGYGQK 226
#
#
# >PA3327_1
# Length = 1040
#
# Score = 31.2 bits (69), Expect = 1.6
# Identities = 45/153 (29%), Positives = 59/153 (38%), Gaps = 36/153 (23%)
#
# Query: 12 VALDHAVIEAAGIGYRVNATPSALATLRQGSQARL----VTAMVVREDSMTLYGFSDAEN 67
# VA D AV +GY V A LR G A L + A VR DS+ L +
# Sbjct: 877 VARDSAVRGTHLVGYYVAAAELDPGQLRAGLSATLPDFMLPAFFVRIDSLPLSANGKLDR 936
#
# Query: 68 RDLFLALLSVSGVGPR--------------LAMATLAVHD----------------AAAL 97
# R L V+ V PR L +A + VHD AAA
# Sbjct: 937 RQLPAPPEQVAAVAPRTATEAELAAVWADVLGVAEVGVHDDFYALGGDSILMLRIRAAAQ 996
#
# Query: 98 RQALADSDVASLTRVPGIGKRGAERIVLELRDK 130
# R+ L ++A L R P + AER+V L ++
# Sbjct: 997 RRGLG-FELADLMRNPTVAGL-AERLVRPLAER 1027
#
#
# >DR1087
# Length = 286
#
# Score = 30.0 bits (66), Expect = 3.5
# Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
#
# Query: 80 VGPRL-AMATLAVHDAAALRQALADSDVASLTRVPGIGKR-GAERIVLELRDKVGPVGAS 137
# +G RL A + A + + + ++A+ R G+G G++R++LE P
# Sbjct: 8 LGRRLKAPVLIGAMTGGAEKAGVINRNLATAARNLGLGMMLGSQRVMLE-----HPDAWE 62
#
# Query: 138 GLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALS 197
# V A + G++ A LG+ A+QA A D+V+ D + L+ AL
# Sbjct: 63 SFNVREVAPEILLIGNLGAAQFMLGYGAEQARRAVDEVM-----ADALAIHLNPLQEALQ 117
#
# Query: 198 LLGKTR 203
# G TR
# Sbjct: 118 RGGDTR 123
#
#
# >SA1766_1
# Length = 489
#
# Score = 29.6 bits (65), Expect = 4.6
# Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 13/120 (10%)
#
# Query: 79 GVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGAERIVLE--LRDKVGPVGA 136
# G G + + + AAA +A A+ D T G G E L+ +D G
# Sbjct: 164 GKGLMIGVTAPVLGIAAASGKAFAEVDKGLDTVTQATGATGGELKKLQNSFKDVYGNFPE 223
#
# Query: 137 SGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGE--LGKDGAVATSSALRA 194
# TVG G + E LGF K+ E AT+ L G DG A RA
# Sbjct: 224 DAETVG---------GVLGEVNTRLGFTGKELESATESFLKFSHITGSDGVQAVQLITRA 274
#
#
# >BH2496
# Length = 295
#
# Score = 29.3 bits (64), Expect = 6.0
# Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
#
# Query: 114 GIGKRGAERIVLELRDKVGPV--GASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEA 171
# G + AE + + L++ +G V +GL NA+ S+ + A Q+
# Sbjct: 188 GTPSQSAEAMAIALKNMLGLVCDPVAGLVEVPCVKRNAIGASIAITAADMALAGIQSRIP 247
#
# Query: 172 TDQVLDG--ELGKDGAVATSSALRAALSLLGKTR 203
# TD+V+D ++G+ VA + L+ K R
# Sbjct: 248 TDEVIDAMYKIGQAMPVAYKETAQGGLAATPKGR 281
#
#
# >AGc541
# Length = 515
#
# Score = 29.3 bits (64), Expect = 6.0
# Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
#
# Query: 121 ERIVLELRDKV-GPVGASGL-------TVGTAADGNAVRGSVVEALVGLGFAAK----QA 168
# ++ V E R++V + ASGL TV A GS + + LG A A
# Sbjct: 43 DKAVAESRERVQAALHASGLALPAKKVTVNLAPADLPKEGSHFDLPIALGLMAALGAIPA 102
#
# Query: 169 EEATDQVLDGELGKDGAVAT-SSALRAAL--SLLGK 201
# E + V+ GEL DG + T S AL AA+ + LGK
# Sbjct: 103 EALSQYVVLGELNLDGTIGTVSGALPAAIGANALGK 138
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.316 0.132 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,555,394
Number of Sequences: 192987
Number of extensions: 729061
Number of successful extensions: 3532
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 3432
Number of HSP's gapped (non-prelim): 123
length of query: 203
length of database: 59,019,183
effective HSP length: 104
effective length of query: 99
effective length of database: 38,948,535
effective search space: 3855904965
effective search space used: 3855904965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)