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Finding cDNAs
UGID:304400     UniGene Mm.194450     Mus musculus (mouse)   Smchd1 Order cDNA clone, Links
SMC hinge domain containing 1 (Smchd1), mRNA (Smchd1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_083163.3 SMC hinge domain containing 1 M. musculus 100.0 2006
NP_056110.2 structural maintenance of chromosomes flexible hinge domain containing 1 H. sapiens 91.2 1999
XP_699397.3 PREDICTED: similar to SMC hinge domain containing 1, partial D. rerio 61.1 1115

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; spleen; mixed; thymus; eye; mammary gland; extraembryonic tissue; skin; kidney; ovary; prostate; heart; lung; pancreas; bone marrow; uncharacterized tissue; intestine; joint; testis; pituitary gland; lymph node; spinal cord; dorsal root ganglion; bladder; salivary gland; fertilized ovum; bone; uterus; nasopharynx; liver
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17 E1.3
UniSTS entry: Chr 17 AW554188
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

AK078494.1 Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820416H03 product:hypothetical ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase structure containing ... P
AK053453.1 Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130019A11 product:unclassifiable, full insert sequence
AK030247.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933430H04 product:RIKEN cDNA 4931400A14 gene, full insert sequence P
BC040778.1 Mus musculus, clone IMAGE:4946610, mRNA PA
BC044905.1 Mus musculus SMC hinge domain containing 1, mRNA (cDNA clone IMAGE:4021503), partial cds PA
BC058618.1 Mus musculus SMC hinge domain containing 1, mRNA (cDNA clone IMAGE:5696992), partial cds PA
AK129181.1 Mus musculus mRNA for mKIAA0650 protein P
BC058205.1 Mus musculus SMC hinge domain containing 1, mRNA (cDNA clone IMAGE:5360557), partial cds PA
BC062946.1 Mus musculus SMC hinge domain containing 1, mRNA (cDNA clone MGC:77958 IMAGE:30357469), complete cds PA
BC076627.1 Mus musculus RIKEN cDNA 4931400A14 gene, mRNA (cDNA clone IMAGE:30642109), partial cds PA
AK204889.1 Mus musculus cDNA, clone:Y1G0149P04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000024850, based on BLAT search
AK201771.1 Mus musculus cDNA, clone:Y1G0139F05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000024850, based on BLAT search
AK038327.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130096B02 product:unclassifiable, full insert sequence
AK162806.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130086M16 product:hypothetical protein, full insert sequence
AK135372.1 Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820407M18 product:hypothetical protein, full insert sequence
AK016419.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4931400A14 product:hypothetical protein, full insert sequence P
NM_028887.3 Mus musculus SMC hinge domain containing 1 (Smchd1), mRNA PA
BC039785.1 Mus musculus, Similar to RIKEN cDNA 4931400A14 gene, clone IMAGE:4527517, mRNA PA

EST sequences (10 of 312) [Show all sequences]

CA564656.1 Clone NIA:K0328G04_IMAGE:30057003 bone 5' read P
BY029926.1 Clone I0C0004G12 embryonic tissue 5' read P
BY029933.1 Clone I0C0004H16 embryonic tissue 5' read P
BY157828.1 Clone I830014M13 bone marrow 5' read
BY337071.1 Clone L230005C01 joint 5' read
BY339732.1 Clone L230023O15 joint 5' read
BY341260.1 Clone L230032O04 joint 5' read
BY343178.1 Clone L230044E14 joint 5' read
BY380986.1 Clone I0C0004G12 embryonic tissue 3' read
BY380997.1 Clone I0C0004H16 embryonic tissue 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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