R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|8894548|emb|CAB95829.1| (AJ404639) hypothetical protein [Cicer arietinum]
Length = 482
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 482
0 150 300 450
Plus Strand HSPs:
Score = 683 (240.4 bits), Expect = 3.2e-66, P = 3.2e-66
Identities = 131/155 (84%), Positives = 141/155 (90%), Frame = +3
Query: 6 FFTQRTKSKFVFAGPSKSADTLFRYIAPELVPVQYGGLSREAEQEFTSAYPVTEFTIKPA 185
F T RTKSKF FAGPSKSADTLF+YIAPE VPVQYGGLSRE +QEFT+A P TE TIKPA
Sbjct: 328 FLTPRTKSKFFFAGPSKSADTLFKYIAPEQVPVQYGGLSREGDQEFTTADPATEVTIKPA 387
Query: 186 TKHSVEFPVSEKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETVLTN 365
TKH+VEFP+ EKS LVWE+RVVGWDVSYGAEFVPSAEDGYTVIV K+RKIAPADETV+ N
Sbjct: 388 TKHAVEFPIPEKSTLVWEVRVVGWDVSYGAEFVPSAEDGYTVIVQKNRKIAPADETVINN 447
Query: 366 GFKIGEPGKIVLTIDNQTSKKKKLLYRSKTKPIAE 470
FKIGEPGK+VLTIDNQTSKKKKLLYRSKT PI+E
Sbjct: 448 TFKIGEPGKVVLTIDNQTSKKKKLLYRSKTIPISE 482
>gi|12323663|gb|AAG51796.1|AC067754_12 (AC067754) cytosolic factor, putative;
19554-17768 [Arabidopsis thaliana]
Length = 490
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 490
0 150 300 450
Plus Strand HSPs:
Score = 480 (169.0 bits), Expect = 1.0e-44, P = 1.0e-44
Identities = 91/156 (58%), Positives = 116/156 (74%), Frame = +3
Query: 6 FFTQRTKSKFVFAGPSKSADTLFRYIAPELVPVQYGGLSRE---AEQEFTSAYPVTEFTI 176
F T R+KSK VFAGPS+SA+TLF+YI+PE VPVQYGGLS + +F+ +E T+
Sbjct: 335 FMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASEITV 394
Query: 177 KPATKHSVEFPVSEKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETV 356
KP TK +VE + EK LVWEIRV GW+VSY AEFVP +D YTV++ K RK+ P+DE V
Sbjct: 395 KPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPV 454
Query: 357 LTNGFKIGEPGKIVLTIDNQTSKKKKLLYRSKTKPI 464
LT+ FK+ E GK++LT+DN TSKKKKL+YR KP+
Sbjct: 455 LTHSFKVNELGKVLLTVDNPTSKKKKLVYRFNVKPL 490
>gi|12323660|gb|AAG51793.1|AC067754_9 (AC067754) cytosolic factor, putative;
12503-14597 [Arabidopsis thaliana]
Length = 573
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 573
0 150 300 450
Plus Strand HSPs:
Score = 461 (162.3 bits), Expect = 1.1e-42, P = 1.1e-42
Identities = 89/147 (60%), Positives = 112/147 (76%), Frame = +3
Query: 18 RTKSKFVFAGPSKSADTLFRYIAPELVPVQYGGLSREAEQEFTSAYPVTEFTIKPATKHS 197
RT+SK V AGPSKSADT+F+YIAPE VPV+YGGLS++ + +TE +KPA ++
Sbjct: 430 RTRSKMVLAGPSKSADTIFKYIAPEQVPVKYGGLSKDTP---LTEETITEAIVKPAANYT 486
Query: 198 VEFPVSEKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETVLTNGFKI 377
+E P SE L WE+RV+G DVSYGA+F P+ E Y VIV K+RKI DE V+T+ FK+
Sbjct: 487 IELPASEACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKV 546
Query: 378 GEPGKIVLTIDNQTSKKKKLLYRSKTK 458
GEPGKIV+TIDNQTSKKKK+LYR KT+
Sbjct: 547 GEPGKIVITIDNQTSKKKKVLYRFKTQ 573
>gi|7267559|emb|CAB78040.1| (AL161514) putative protein [Arabidopsis thaliana]
Length = 723
Frame 3 hits (HSPs): ______ ______
__________________________________________________
Database sequence: | | | | | | 723
0 150 300 450 600
Plus Strand HSPs:
Score = 279 (98.2 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 50/84 (59%), Positives = 67/84 (79%), Frame = +3
Query: 216 EKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETVLTNGFKIGEPGKI 395
+K +VWEIRVVGW+VSYGAEFVP ++GYTVI+ K RK+ +E V+++ FK+GE G+I
Sbjct: 638 QKCTIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRI 697
Query: 396 VLTIDNQTSKKKKLLYRSKTKPIA 467
+LT+DN TS KK L+YR K KP+A
Sbjct: 698 LLTVDNPTSTKKMLIYRFKVKPLA 721
Score = 201 (70.8 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 43/74 (58%), Positives = 52/74 (70%), Frame = +3
Query: 6 FFTQRTKSKFVFAGPSKSADTLFRYIAPELVPVQYGGLSR---EAEQEFTSAYPVTEFTI 176
F +QR+KSK VFAGPS+SA+TL +YI+PE VPVQYGGLS E +FT TE T+
Sbjct: 510 FMSQRSKSKLVFAGPSRSAETLLKYISPEHVPVQYGGLSVDNCECNSDFTHDDIATEITV 569
Query: 177 KPATKHSVEFPVSE 218
KP TK +VE V E
Sbjct: 570 KPTTKQTVEIIVYE 583
>gi|6587836|gb|AAF18525.1|AC006551_11 (AC006551) Unknown protein [Arabidopsis
thaliana]
Length = 683
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 683
0 150 300 450 600
Plus Strand HSPs:
Score = 443 (155.9 bits), Expect = 2.1e-40, P = 2.1e-40
Identities = 85/147 (57%), Positives = 114/147 (77%), Frame = +3
Query: 18 RTKSKFVFAGPSKSADTLFRYIAPELVPVQYGGLSREAEQEFTSAYPVTEFTIKPATKHS 197
RT+SK V +GPSKSA+T+F+Y+APE+VPV+YGGLS+++ FT VTE +K +K++
Sbjct: 538 RTRSKMVLSGPSKSAETIFKYVAPEVVPVKYGGLSKDSP--FTVEDGVTEAVVKSTSKYT 595
Query: 198 VEFPVSEKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETVLTNGFKI 377
++ P +E S L WE+RV+G DVSYGA+F PS E YTVIV K+RK+ DE V+T+ FK
Sbjct: 596 IDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKA 655
Query: 378 GEPGKIVLTIDNQTSKKKKLLYRSKTK 458
E GK+V+TIDNQT KKKK+LYRSKT+
Sbjct: 656 SEAGKVVITIDNQTFKKKKVLYRSKTQ 682
>gi|4587525|gb|AAD25756.1|AC007060_14 (AC007060) Contains the PF|00650
CRAL/TRIO phosphatidyl-inositol-transfer protein domain. ESTs
gb|T76582, gb|N06574 and gb|Z25700 come from this gene.
[Arabidopsis thaliana]
Length = 540
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 540
0 150 300 450
Plus Strand HSPs:
Score = 371 (130.6 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 75/151 (49%), Positives = 103/151 (68%), Frame = +3
Query: 6 FFTQRTKSKFVFAGPSKSADTLFRYIAPELVPVQYGGLSREAEQEFTSAYPVTEFTIKPA 185
F TQRTKSKFV A P+K +TL +YI + +PVQYGG + EF++ V+E +KP
Sbjct: 386 FLTQRTKSKFVVARPAKVRETLLKYIPADELPVQYGGFKTVDDTEFSNE-TVSEVVVKPG 444
Query: 186 TKHSVEFPVSE-KSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETVLT 362
+ ++E P E + LVW+I V+GW+V+Y EFVP+ E YTVIV K +K+ A+E +
Sbjct: 445 SSETIEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMG-ANEGPIR 503
Query: 363 NGFKIGEPGKIVLTIDNQTSKKKKLLYRSKTK 458
N FK + GKIVLT+DN + KKKK+LYR +TK
Sbjct: 504 NSFKNSQAGKIVLTVDNVSGKKKKVLYRYRTK 535
>gi|11358091|pir||T46063 hypothetical protein T18N14.50 - Arabidopsis thaliana
>gi|6580149|emb|CAB63153.1| (AL132968) putative protein
[Arabidopsis thaliana]
Length = 409
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 409
0 150 300
Plus Strand HSPs:
Score = 337 (118.6 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 66/148 (44%), Positives = 97/148 (65%), Frame = +3
Query: 6 FFTQRTKSKFVFAGPSKSADTLFRYIAPELVPVQYGGLSREAEQEFTSAYPVTEFTIKPA 185
F TQRTKSKFV + +A+TL+++I PE +PVQYGGLSR + + P +EF+IK
Sbjct: 252 FLTQRTKSKFVMSKEGNAAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPKPASEFSIKGG 311
Query: 186 TKHSVEFP-VSEKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETVLT 362
K +++ + + + W+I V GWD+ Y AEFVP+AE+ Y ++V K +K+ DE V
Sbjct: 312 EKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDEAVC- 370
Query: 363 NGFKIGEPGKIVLTIDNQTSKKKKLL-YR 446
N F E GK++L++DN S+KKK+ YR
Sbjct: 371 NSFTTVEAGKLILSVDNTLSRKKKVAAYR 399
>gi|4902478|emb|CAB43521.1| (AJ238803) hypothetical protein [Arabidopsis
thaliana]
Length = 147
Frame 3 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 289 (101.7 bits), Expect = 1.8e-24, P = 1.8e-24
Identities = 56/131 (42%), Positives = 86/131 (65%), Frame = +3
Query: 57 SADTLFRYIAPELVPVQYGGLSREAEQEFTSAYPVTEFTIKPATKHSVEFP-VSEKSHLV 233
+A+TL+++I PE +PVQYGGLSR + + P +EF+IK K +++ + + +
Sbjct: 7 AAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPKPASEFSIKGGEKVNIQIEGIEGGATIT 66
Query: 234 WEIRVVGWDVSYGAEFVPSAEDGYTVIVHKSRKIAPADETVLTNGFKIGEPGKIVLTIDN 413
W+I V GWD+ Y AEFVP+AE+ Y ++V K +K+ DE V N F E GK++L++DN
Sbjct: 67 WDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDEAVC-NSFTTVEAGKLILSVDN 125
Query: 414 QTSKKKKLL-YR 446
S+KKK+ YR
Sbjct: 126 TLSRKKKVAAYR 137
>gi|1346953|sp|P49193|RALB_TODPA RETINAL-BINDING PROTEIN (RALBP)
>gi|627118|pir||A53057 retinal-binding protein - Japanese flying
squid >gi|545383|gb|AAB29891.1| (S68871) retinal-binding protein,
RALBP [Todarodes pacificus=squid, eyes, Peptide, 343 aa]
Length = 343
Frame 3 hits (HSPs): ______ ________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 343
0 150 300
__________________
Annotated Domains:
DOMO DM00869: CELLULARRETINALDEHYDE-BINDINGPR 1..208
Entrez acetylation site 2
PFAM CRAL_TRIO: CRAL/TRIO domain. 1..185
PRODOM PD002025: SC14(7) CRAL(2) TTPA(2) 3..178
PRODOM PD038870: O17907(1) O76054(1) RALB(1) 183..332
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.49, Sum P(2) = 0.39
Identities = 27/105 (25%), Positives = 49/105 (46%), Frame = +3
Query: 108 YGG-LSREAEQEFTSAYPVTE-FTIKPATKHSVEFPV-SEKSHLVWEIRVVGWDVSYGAE 278
+GG + +E E T + E T+ K VE+ + +E +++ WE + D+ +G
Sbjct: 200 HGGEVPKEFYLENTDDFETMETITVGSGDKIYVEYEIENENTYIKWEYKTEEHDIGFGL- 258
Query: 279 FVPSAEDGYTVIVHKSRKIAPADETVLT--NGFKIGEPGKIVLTIDNQTS 422
F + ++ V+ I D +++T K +PG L DN S
Sbjct: 259 FRKNGDEWEEVV-----PIERTDCSIMTLDGSHKCKDPGTYALCFDNSFS 303
Score = 60 (21.1 bits), Expect = 0.49, Sum P(2) = 0.39
Identities = 16/39 (41%), Positives = 21/39 (53%), Frame = +3
Query: 24 KSK-FVFAGPSKSADTLFRYIAPELVPVQYGGLSREAEQE 140
K+K FV G K DTL YI E +P GG E +++
Sbjct: 156 KNKIFVLGGDYK--DTLLEYIDAEELPAYLGGTKSEGDEK 193
>gi|5918866|gb|AAD56166.1| (AF154480) NADH dehydrogenase subunit 2 [Toxostoma
crissale]
Length = 85
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 5.8, P = 1.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Frame = +1
Query: 169 LLLNPLPNILLS-SLFLRKAILFGKSEWWVGMSAMELNLCPALRMDTLS*YTRA 327
LL+NP ++ + SL L I + W + +E+N L M + S + RA
Sbjct: 8 LLMNPQAKLVFTTSLLLGSTITISSNHWITAWAGLEINTLAVLPMISKSHHPRA 61
>gi|10946319|gb|AAG24854.1| (AF299064) NADH dehydrogenase subunit 2 [Gymnotus
pantherinus]
Length = 149
Frame -1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
Minus Strand HSPs:
Score = 75 (26.4 bits), Expect = 9.4, P = 1.0
Identities = 20/55 (36%), Positives = 30/55 (54%), Frame = -1
Query: 427 FLDVWLSMVSTILPGSPILKPLVRTVSSAGAIFLL-LC---TMTVYPSSALGTNSAP 269
F+ WL + + GSPIL ++ + G F L LC T+T+YP++ G AP
Sbjct: 72 FMPKWLILQELTMQGSPILATIMALTALLGLYFYLRLCYTMTLTIYPNT--GYAPAP 126
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.325 0.140 0.429
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.356 0.158 0.664
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.332 0.143 0.442
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.153 0.511
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.365 0.161 0.726
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.323 0.140 0.414
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 181 180 10. 76 3 12 22 0.11 34
31 0.12 37
+2 0 182 181 10. 76 3 12 22 0.12 34
31 0.12 37
+1 0 182 181 10. 76 3 12 22 0.12 34
31 0.12 37
-1 0 182 181 10. 76 3 12 22 0.12 34
31 0.12 37
-2 0 182 181 10. 76 3 12 22 0.12 34
31 0.12 37
-3 0 181 181 10. 76 3 12 22 0.12 34
31 0.12 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 11
No. of states in DFA: 594 (59 KB)
Total size of DFA: 222 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 198.98u 0.86s 199.84t Elapsed: 00:00:47
Total cpu time: 199.01u 0.88s 199.89t Elapsed: 00:00:47
Start: Mon Feb 4 15:50:27 2002 End: Mon Feb 4 15:51:14 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000