Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss302849	KWOK|OVLP-000621-326749		rev/T	A/G	gatatgaacagacacttctcatactgtagc	ttttgcactttcccaagcaatgtatgaaag	06/30/00	10/10/03	79	Genomic			97 %
ss428623	KWOK|OVLP-000621-321560		rev/T	A/G	gatatgaacagacacttctcatactgtagc	ttttgcactttcccaagcaatgtatgaaag	06/30/00	10/10/03	79	Genomic			99 %
ss1108859	KWOK|OVLP-000804-246639		rev/T	A/G	gatatgaacagacacttctcatactgtagc	ttttgcactttcccaagcaatgtatgaaag	09/02/00	10/10/03	86	Genomic			99 %
ss1222588	KWOK|OVLP-000804-248227		fwd/B	C/T	ctttcatacattgcttgggaaagtgcaaaa	gctacagtatgagaagtgtctgttcatatc	09/02/00	10/10/03	86	Genomic			97 %
ss1896076	KWOK|OVLP-000925-356900		rev/T	A/G	gatatgaacagacacttctcatactgtagc	ttttgcactttcccaagcaatgtatgaaag	10/06/00	08/14/07	87	Genomic			99 %
ss1954753	KWOK|OVLP-000925-358834		fwd/B	C/T	ctttcatacattgcttgggaaagtgcaaaa	gctacagtatgagaagtgtctgttcatatc	10/06/00	10/10/03	87	Genomic			97 %
ss21669015	SSAHASNP|WGSA-200403-chr2.chr2.NT_022184.13_17106849		rev/T	A/G	gatatgaacagacacttctcatactgtagc	ttttgcactttcccaagcaatgtatgaaag	03/20/04	03/20/04	121	Genomic			unknown
ss41691672	ABI|hCV1879014		rev/T	A/G	gatatgaacagacacttctcatactgtagc	ttttgcactttcccaagcaatgtatgaaag	07/17/05	07/17/05	126	Genomic			unknown
ss66339531	AFFY|SNP_A-1942580		fwd/B	C/T	ttgggaaagtgcaaaa	gctacagtatgagaag	10/29/06	08/14/07	127	Genomic			unknown
ss76042733	AFFY|AFFY_6_1M_SNP_A-1942580		fwd/B	C/T	ttgggaaagtgcaaaa	gctacagtatgagaag	08/28/07	08/29/07	129	Genomic			unknown

Fasta sequence   (Legend)

 AAAGGGGAGT GAGTTTTGTC GCACCTGCTT CTCAGCACTG ATGATCTCTT CACCTTCTCC
 ATGACTCAGT TTTCAATTGG TACTCTTGAA GTCTAACCTG tttctttctt tctttttttt
 tttgagatgg agtctcgctc tgtcacccag gctggagtgc catggtatga tctcagctca
 ctgcaacctc cgcctcccag gttcaagtga ttctcctgtc tcagcccccc gagtagctgg
 gactacaggc atacaccacc atgtctggct aatttttgta tttttagtag acacgaggtt
 tcaccatgtt ggttaggcta gtctcaaact cctgatctac ccgcctcgga ctcccaaagt
 actgggatta caggtgtgaa ccaatgcacc cggccCCTAA TCTCAGTTTC TTCTCTTTGC
 TTACAAATTG AGCTTATTCA AGGTTTTTAG GTTTCTGCTT AGTCACTATG AAGAAAGCAG
 AAATGCCAAC TCAATGGCTT CCAATTTTTT AAACCATAGC CTCACAGTAT GCAATATATT
 TTACATGATT TAGTACATAT CTCTACATGT GATTGTGTGT ACTTCATAGA TATATATTTA
 TGTATGTATA TATacacaca cacacataca cacacacaaa caGGATTCAC TATTGTTTTC
 TGTGATGGaa tatattttta aatttttttC ATAAgaaatg cagcacagtg aaatactact
 acaaacctat catagtggct aaatttttaa aaaaatgaca aaactgataa catataccaa
 gtattgggga ggatgtgaaa ctactggaac tttcatacat tgcttgggaa agtgcaaaa
 Y
 gctacaGTAt gagaagtgtc tgttcatatc cttcgcccac tttttgatgg ggttgtttgt
 ttttttcttg taaatttgtt tgagttcatt gtagattctg gatattagcc ctttgtcaga
 tgagtaggtt gcaaaaattt tctcccattc tgtaggttgc ctgttcactc tgatggtagt
 ttcttttgct gtgcagaagc tctttagttt aattagatcc catttgtcaa ttttggcttt
 tgttgccatt acttttggtg ttttagacat gaagtccttg cccatgccta tgtcctgaat
 ggtattgcct aagttttctt ctagggtttt tatggtttta ggtctaacat ttaagtcttc
 aatccatctt gaattaaaaa cacatgaaaa aatgctcatc atcactggcc atcagagaaa
 tgcaaatcaa aaccacaatg agataccatc tcacaccagt tagaatggcg atcattaaaa
 agtcaggaaa caacaggtgc tggagaggat gtggagaaat aggaacactt ttacactgtt
 ggtgggactg taaactagtt caaccgttgt agaagtcagt gtggcgattc ctgagggatc
 tagaactaga aataccattt gacccagcaa tcccattact gggtatatac ccaaaggatt
 ataaatcatg ctgctataaa gacacatgca catgtatgtt tatagtggca ctattcacaa
 tagcaaagac ttggaaccaa cccaaatgtc caacaacgat agactggatt aagaaaatat
 ggcacatata caccatggaa tactatgcaa ccataaaaaa tgatgagttc atgtcctttg
 tagggacatg gatgaaactg taaaccatca ttctcagcaa actatggcag ggacaaaaaa
 ccaaacaccg catgttctca ctcataggtg ggaattgaac aatgagaaca catgcacaca
 ggaaggggaa catcacacac tggggactgt tgtggggggg gggaaggggg gagggatagc
 atttggagat atacctaatg ctaaatgaca agttaatggg tgcagcacac caacatggta
 catgtataca tatgtaacaa acctgcacat tgtgcacatg taccctaaaa cttaaagtat
 aataataata aaattaaaaa aaaatgctac agtatgaccc cactcctggg tatttatcct
 agagaaatga aaacacattc acacaaaagc tatacatgaa tgtttacagc agctgcattc
 atcatgactt catactgaaa acaacctaaa tttccttcaa agggcaatta gttatacaaa
 atctgttaca tccacccaat ggaatactac tcggtaataa aaaagaatga accattgata
 cacacaacaa cttgaatgaa tctcaaggga attatgttga gtaaaataag tcagcttcaa
 aaggttacac actgcacaat tccattgcta cgacagcctc tgagagacaa aagtgtcatg
 atgaagagta gatcagtggt tgtcgagggt taaaggggag ggagagtact acaaaaggat
 agcctggtgg agttttggaa ggttttctga ttgtgacagt ggttacatgg atgtatacat
 gtgttaaaat tcacacaact aCACCAAAAA GTGATGAAAA GTGATTGGAA AAAATGTTAA
 AGGGGAATTG GTGCAAATGA ACTTAAGTGA AGCTGAACTG ACATTGGCAG GTAGCATGGC
 AGCTGCTGGC AGACAAGGAA ACGAGATGGC AACACTGAAC AAAGAAGGTC AGGCCTAGAG
 ATGTGAACAA GGATCATGGC CTGTGCTGAA GTCCTTGCAG GAGA

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_022184->NM_144713 sv function
HuRef	NW_001838769->NM_144713 sv function
Celera	NW_927719->NM_144713 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss1896076	HapMap-CEU	European	118	IG	0.627	0.305	0.068		0.780	0.220
	HapMap-HCB	Asian	90	IG	0.933	0.067			0.967	0.033
	HapMap-JPT	Asian	90	IG	0.978	0.022			0.989	0.011
	HapMap-YRI	Sub-Saharan African	120	IG	0.750	0.217	0.033		0.858	0.142
ss66339531	HapMap-CEU	European	118	GF	0.627	0.305	0.068		0.780	0.220
	HapMap-HCB	Asian	90	GF	0.933	0.067			0.967	0.033
	HapMap-JPT	Asian	90	GF	0.978	0.022			0.989	0.011
	HapMap-YRI	Sub-Saharan African	120	GF	0.750	0.217	0.033		0.858	0.142

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN