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Finding cDNAs
UGID:909164     UniGene Hs.518417     Homo sapiens (human)   STX6 Order cDNA clone, Links
Clone 23570 mRNA sequence (STX6)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
XP_001114975.1 PREDICTED: similar to syntaxin 6 M. mulatta 100.0 254
XP_514037.2 PREDICTED: syntaxin 6 isoform 2 P. troglodytes 100.0 254
NP_005810.1 syntaxin 6 H. sapiens 100.0 254
NP_067408.1 syntaxin 6 M. musculus 99.6 254
NP_001085148.1 hypothetical protein LOC432227 X. laevis 85.4 253
NP_001017879.1 syntaxin 6 D. rerio 84.0 255
NP_995814.1 Syntaxin 6 CG7736-PD, isoform D D. melanogaster 54.8 322

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; testis; mixed; kidney; eye; muscle; pancreas; embryonic tissue; skin; esophagus; larynx; bone marrow; nerve; mouth; uterus; heart; ovary; thymus; bone; pharynx; placenta; lung; intestine; lymph node; connective tissue; blood; ear; bladder; liver; prostate; mammary gland; trachea; thyroid; spleen; cervix; spinal cord; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q25.3
UniSTS entry: Chr 1 SHGC-76008
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

NM_005819.4 Homo sapiens syntaxin 6 (STX6), mRNA PA
CR541873.1 Homo sapiens full open reading frame cDNA clone RZPDo834D0133D for gene STX6, syntaxin 6; complete cds, without stopcodon P
CR541856.1 Homo sapiens full open reading frame cDNA clone RZPDo834F0632D for gene STX6, syntaxin 6; complete cds, incl. stopcodon P
CR612118.1 full-length cDNA clone CS0DB002YB07 of Neuroblastoma Cot 10-normalized of Homo sapiens (human)
CR610805.1 full-length cDNA clone CS0DI027YO10 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR609438.1 full-length cDNA clone CS0DL005YM12 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) P
CR608098.1 full-length cDNA clone CS0DC014YC09 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) P
CR591752.1 full-length cDNA clone CS0DC027YE24 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) P
BC009944.2 Homo sapiens syntaxin 6, mRNA (cDNA clone MGC:12919 IMAGE:4122224), complete cds PA
AK312440.1 Homo sapiens cDNA, FLJ92788, Homo sapiens syntaxin 6 (STX6), mRNA P
AK299063.1 Homo sapiens cDNA FLJ57566 complete cds, highly similar to Syntaxin-6 P
AJ002078.1 Homo sapiens mRNA for syntaxin 6, complete CDS P
AF038202.1 Homo sapiens clone 23570 mRNA sequence A

EST sequences (10 of 314) [Show all sequences]

AA975205.1 Clone IMAGE:1555438 kidney 3' read A
AI000344.1 Clone IMAGE:1637014 kidney 3' read
AI024932.1 Clone IMAGE:1639300 testis 3' read A
AI073357.1 Clone IMAGE:1679398 skin 3' read A
AI090548.1 Clone IMAGE:1691553 heart 3' read
AI128954.1 Clone IMAGE:1663188 skin 3' read A
AI129004.1 Clone IMAGE:1663280 skin 3' read A
AI142729.1 Clone IMAGE:1634202 mixed 3' read A
AI144442.1 Clone IMAGE:1708873 heart 3' read
CB053812.1 Clone IMAGE:3291029 uncharacterized tissue 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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