Molecular Dynamics stuff:
  Introduction to MD
  Amber
  Antechamber
  Charmm
  NAMD
  VMD
  TCL
  LAMMPS
  Gaussian
  Molekel
  Babel
  CNS
  SWPDB
  YASP
  Cerius2
  Insight
  Molecular Modelling
  Intro to MD
  Grace
  Connoly
FORCE FIELDS:
  Tutorial MOF
  Amber FF
  MSI FF
  Reax FF (Adri van Duin)
  Cornell et al FF
  CHARMM
Unix:
  Unix Guru Universe
  AWK
  External Commands
  VI
  Vi summary
  Math links
  Perl Monks
  Perl Documentation
  Perl
  TCL-TK
Ion Channels:
  Roux Lab
  Branton Lab
  Deamer Lab
  PDB
  Cells Alive