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GEO accession:
Sample GSM24238
Query DataSets for GSM24238
Status
Public on May 27, 2005
Title
WLOVA1
Sample type
RNA
Channel 1
Source Name
Ref Pool 2
Organism(s)
Mus musculus
Extracted molecule
total RNA
Channel 2
Source Name
WLOVA1
Organism(s)
Mus musculus
Extracted molecule
total RNA
Description
Total RNA from whole lung
no amplification-cDNA
OVA
Submission date
May 27, 2004
Contact name
Michael E. Salazar
Phone
(415) 514-4371
URL
http://arrays.ucsf.edu
Organization name
University of California, San Francisco
Department
Lab
Functional Genomics Core Laboratories
Street address
1550 Fourth Street, RM 545
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platform ID
GPL1196
Series (1)
GSE1438
Differential Gene Expression due to direct effects of IL-13 on Airway Epithelial Cells
Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R™ (635/532)
F Pixels
B Pixels
Sum of Medians
Sum of Means
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
PRE_VALUE
Ratio of Medians (635/532)
Data table
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R™ (635/532)
F Pixels
B Pixels
Sum of Medians
Sum of Means
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
PRE_VALUE
1
1730
13230
110
7729
7684
1076
183
381
1605
100
100
0
10467
10516
1316
215
1123
5892
100
8
0
-0.4422223
0.728
0.719
0.727
1.149
0.696
0.892
80
612
17798
17802
-0.442
7546
10252
7501
10301
614721
841254
4.55
1.594
0
0
0.736
2
1930
13230
110
8590
8810
1348
176
185
75
100
100
0
5311
5698
1882
210
224
81
100
100
0
0.7215913
1.573
1.622
1.611
1.255
1.54
0.865
80
590
13515
14122
0.722
8414
5101
8634
5488
704837
455853
115
67.58
0
0
1.649
3
2130
13230
110
7845
7877
913
179
194
85
100
100
0
8112
8074
1073
207
226
93
100
100
0
-0.0439433
0.979
0.97
0.981
1.141
0.965
0.966
80
590
15571
15565
-0.044
7666
7905
7698
7867
630160
645900
90.388
84.387
0
0
0.97
4
2330
13230
110
16263
16051
1955
187
195
76
100
100
0
13833
13332
1973
205
216
84
100
100
0
0.2387873
1.209
1.177
1.215
1.152
1.189
0.964
80
590
29704
28991
0.238
16076
13628
15864
13127
1284079
1066563
208.632
156.143
0
0
1.18
5
2530
13230
110
2969
2964
460
179
188
71
100
100
0
2301
2283
317
214
226
89
100
100
0
0.4189993
1.346
1.347
1.346
1.166
1.357
0.95
80
590
4877
4854
0.419
2790
2087
2785
2069
237150
182634
39.099
23.112
0
0
1.337
6
2730
13230
110
11755
11755
1693
171
187
88
100
100
0
10381
10456
1275
207
228
169
100
100
0
0.1877683
1.13
1.116
1.127
1.142
1.137
0.961
80
598
21758
21833
0.187
11584
10174
11584
10249
940379
836446
131.455
60.521
0
0
1.139
7
2940
13230
110
1435
1477
337
169
182
92
100
100
0
1269
1259
295
202
216
80
100
100
0
0.2473203
1.237
1.261
1.25
1.304
1.228
0.867
80
598
2333
2365
0.247
1266
1067
1308
1057
118176
100729
14.076
13.038
0
0
1.187
8
3140
13220
100
623
618
130
167
177
84
100
100
0
314
327
89
193
218
322
5
0
0
1.9141823
3.366
3.47
3.521
2.005
4.037
0.269
80
504
577
585
1.914
456
121
451
134
49426
26187
5.25
0.339
0
0
3.769
9
3330
13220
110
2865
3039
1033
162
175
116
100
100
0
2073
3806
6247
187
241
729
100
91
0
0.5190393
0.795
1.424
1.23
1.721
0.279
0.453
80
598
4589
6496
0.519
2703
1886
2877
3619
243146
304499
24.69
4.89
0
0
1.433
10
3530
13210
90
1532
1503
262
164
187
144
100
100
0
792
805
195
193
208
86
100
100
0
1.1915633
2.188
2.076
2.278
1.441
2.273
0.81
52
412
1967
1951
1.191
1368
599
1339
612
78180
41847
9.139
6.942
0
0
2.284
11
3730
13220
110
6140
6052
839
161
178
146
100
100
0
3514
3539
553
194
203
84
100
100
0
0.8487983
1.761
1.763
1.77
1.161
1.768
0.952
80
598
9299
9236
0.849
5979
3320
5891
3345
484153
283129
40.233
39.714
0
0
1.801
12
3920
13220
110
6983
6920
1042
170
191
147
100
100
0
5320
5116
944
206
225
97
100
100
0
0.4135943
1.375
1.386
1.389
1.166
1.356
0.966
80
588
11927
11660
0.414
6813
5114
6750
4910
553565
409274
45.776
50.423
0
0
1.332
13
4130
13220
110
1159
1171
235
156
174
165
100
100
0
508
530
127
196
211
80
98
95
0
1.6848193
3.039
3.236
3.188
1.615
4.083
0.482
80
564
1315
1349
1.685
1003
312
1015
334
93652
42390
6.042
3.988
0
0
3.215
14
4330
13220
80
2916
2632
898
150
159
61
100
100
0
2338
2176
620
180
193
70
100
100
0
0.3583963
1.243
1.252
1.188
1.327
1.284
0.956
52
340
4924
4478
0.358
2766
2158
2482
1996
136874
113169
40.541
28.329
0
0
1.282
15
4520
13210
90
870
867
178
157
169
79
100
100
0
940
927
208
177
193
88
100
100
0
-0.0985063
0.947
0.959
0.956
1.477
0.939
0.781
52
412
1476
1460
-0.098
713
763
710
750
45075
48215
8.835
8.341
0
0
0.934
16
4730
13220
80
413
422
107
155
167
85
96
82
0
570
566
110
179
188
73
100
96
0
-0.5994623
0.69
0.698
0.666
1.712
0.728
0.663
52
340
649
654
-0.6
258
391
267
387
21927
29429
3
5.178
0
0
0.66
17
4930
13220
110
9555
9412
1362
152
167
76
100
100
0
4778
4632
943
180
192
73
100
100
0
1.0321013
2.08
2.081
2.113
1.227
2.082
0.949
80
588
14001
13712
1.032
9403
4598
9260
4452
752956
370520
121.645
60.822
0
0
2.045
18
5120
13210
80
383
384
116
160
173
74
88
73
0
299
304
79
180
192
77
67
32
0
0.9061213
1.806
1.879
1.965
2.863
2.167
0.139
52
332
342
348
0.906
223
119
224
124
19953
15785
2.851
1.455
0
0
1.874
19
5330
13220
120
7916
7108
2327
160
174
68
100
100
0
5987
5237
1862
191
203
78
98
97
0
0.4200783
1.377
1.378
1.451
1.427
1.36
0.975
120
679
13552
11994
0.42
7756
5796
6948
5046
852991
628392
101.971
64.538
0
0
1.338
20
5510
13210
80
334
340
140
184
207
137
61
15
0
231
234
66
222
254
283
0
0
0
4.0589233
13
5.032
4.07
2.719
4.887
0.071
52
318
159
168
4.059
150
9
156
12
17704
12156
0.971
-0.071
0
0
16.667
Total number of rows:
18240
Table truncated, full table size
3711 Kbytes
.
Supplementary data files not provided
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