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COG0689: Rph 
RNase PH [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 31033
View PSSM: COG0689
Aligned: 46 rows
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
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Aligned Rows:
COG0689 is classified as a model that may span more than one domain.
COG0689 is not assigned to any domain superfamily.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15887678  39 PTWRVDHMRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTAS-LEEKTPPWLRNSGKGWVTAEYGMLPRST-N 116
gi 21759421   1 -MTPPKLPVREGRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVT-LDDKPAPHMRGKKEGWLTAEYSMLPRST-T 77
gi 19173205   1 MLVSEEGFREDGRRPNELRRIEATKRRIGEK-GRVDMRQGNTQVSVICSgPREIGKLSVGVEFYAVSRQEPVSEKRAS-- 77
gi 19074636   1 -----------------MDGIKSMVSVISHCTGSSRFSYNNTTVFCVVHgPSDAISRQEDPDRAILDVRWRDMVLING-- 61
gi 21759394   5 EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDgPSEPVIKSKARADRTFVNVEINIASFSTiD 84
gi 19112052   1 ---------------------MNRIGILSRSDGSSEWKQGSARVICGVN---GPIDVKIRDERLNKATVEVLVQPVSG-- 54
gi 19113410  18 FEEPEQPVFTRTRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSgPRPSKTFAFRSS--AKLNCEFRLSPFSTsV 95
gi 16082286  10 KLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYgPKEAYPKHSQDIDHAIVKARYNMAAFSV-D 88
gi 1723689   16 NKEPNTKNRLDSAEKKKKMSVQAEIGILDHVDGSSEFVSQDTKVICSVTgPIEPKARQELPTQLALEIIVRPAKGVAT-- 93
gi 21759403   1 MVWQ----RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVS-VAESVPKFLTGSGKGWLTAEYRMLPSAT-Q 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15887678 117 ERMKREAASgkqgGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQADG--GTRTASITGAWIALHDCLkwmetrnm 194
gi 21759421  78 DRQARERNLq--nGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADG--GTRVASVLAGHAALHDFCdrlinsgq 153
gi 19173205  78 ----------------EYEG-----LLLDIFGDVLLPEASVDIQVIVREDGG--SLLSTMINCTTLCLSYFG-------- 126
gi 19074636  62 -R-VY----------DKYFSRVIEKILSKNIILELDACKVIQISFNVVGETR--NTLFCAVNAALLALADGG-------- 119
gi 21759394  85 VKKRFKSDR-----RIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDG--AVMASCINATTLALIDAG-------- 149
gi 19112052  55 ---VAET-------LEKMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGt-DTLAAVINGAVLALLDAG-------- 115
gi 19113410  96 RQGHVQTVE------EKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGalATLAAAISCASSAIADAN-------- 161
gi 16082286  89 ERKRPGPDR-----RTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADA--GTRIAGLTAATVALADAG-------- 153
gi 1723689   94 TREKVLEDK----LRAVLTPLITR--HCYPRQLCQITCQILESGEDEAEFSL--RELSCCINAAFLALVDAG-------- 157
gi 21759403  75 QRHERELLKl--sGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQADA--GTRTAAITGGFVALAEAIsqllqrgv 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15887678 195 ikvEKVLKdHIAAISCGIFAKQ--PVIDLDYLEDSSAETDANFVITGSGG---IVEVQGTAEGAPFSEEEFLTLLGLAKA 269
gi 21759421 154 lseWPIVH-NVGAISVGLIGDE--LRVDLDYEEDKVARADLNVIATDTGL---LVEVQGGAELGPITVDEYTRLLSCGVA 227
gi 19173205 127 ---MPLVD---MCYSSAVAEGC----VDLASTEESQRVPVVTVAYLMNRK-----SILYLSLSGRVACSRLQASVLDAIG 191
gi 19074636 120 ---IPLRSmFYASSSFMHEEEV------VVFDKDENILSTHSFEGISETN------IEKARDFLKYVKEAQAYTLRSKFP 184
gi 21759394 150 ---IPVKD-FVCCSTAGIVESD--MLLDLNSLEES-ALSWLTVAVLGNIK-----KVVYMQLETSMHLDYLESVMNMAIA 217
gi 19112052 116 ---ISLKY---IPCAINCHWKNk-ITQDEPDVDGTINKLESIITICYSISs-ePAKLIFLETAGPIPEEDFFRVLETAPL 187
gi 19113410 162 ---IDCID-LVTGSSVLFNPNTdeYWIDPDYVDERARAAKGSVVMGYMAS---LGHVTQVWERGTCSPSRLSFLTEKCIK 234
gi 16082286 154 ---VPMRD-MVVGCTAGKVDGH--MVLDLSKEEDNYGEADIPIAIMPKTG-----DIVLMQMDGDVTEDELYQAMDMIFE 222
gi 1723689  158 ---IALNS-MCASIPIAIIKDTsdIIVDPTAEQLKISLSVHTLALEFVNGgkvVKNVLLLDSNGDFNEDQLFSLLELGEQ 233
gi 21759403 151 lerS-PLCgQIAAVSVGLLEQE--AYLDLNYIEDVAATVDFNVVMNKNLG---IIEVQGTAEEGSFSRTQLNQLLDCAET 224
                       250
                ....*....|....
gi 15887678 270 GCSELVALQKQAIA 283
gi 21759421 228 SVQDVMRELTPQLA 241
gi 19173205 192 ACNAIGECLGNFFS 205
gi 19074636 185 FCAD---------- 188
gi 21759394 218 GSEHIYNTMQSAVR 231
gi 19112052 188 HAEEVSKKMKELLF 201
gi 19113410 235 NAKDTRLVINHALL 248
gi 16082286 223 ATKRISQIQREALL 236
gi 1723689  234 KCQELVTNIRRIIQ 247
gi 21759403 225 GIQQLLIAQQQAIT 238
Citing CDD
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40
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