1999, 2000, 2001, 2002, 2003, 2004 Publications for the Division Of Computational Bioscience and its subordinate organizations There are 356 publications 1. Adam L, Bouvier M, Jones TL (1999) Nitric oxide modulates beta(2)-adrenergic receptor palmitoylation and signaling. J Biol Chem. 274:26337-43. 2. Agarwala R, Biesecker LG, Tomlin JF, Schaffer AA (1999) Towards a complete North American Anabaptist genealogy: A systematic approach to merging partially overlapping genealogy resources. Am J Med Genet. 86:156-61. 3. Albert P, Follmann D, Wang S, Suh E (2002) A Latent Autoregressive Model for Longitudinal Binary Data Subject to Informative Missingness. Biometrics. 58:631-42. 4. Albert PS, Follman DA, Wang S (2003) A Latent Autoregressive Model for Longitudinal Binary Data SUbject to Infomative Missingness. Biometrics. 58:631-642. 5. Alizadeh A, Eisen M, Davis RE, Ma C, Sabet H, Tran T, Powell JI, Yang L, Marti GE, Moore DT, Hudson JR, Chan WC, Greiner T, Weisenburger D, Armitage JO, Lossos I, Levy R, Botstein D, Brown PO, Staudt LM (1999) The lymphochip a specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes. Cold Spring Harb Symp Quant Biol. 64:71-8. 6. Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Staudt LM (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature. 403:503-11. 7. Altarescu G, Moore DF, Pohida R, Campia U, Goldstein S, Bryant M, Panza JA, Schiffmann R (2001) Enhanced endothelium-dependent vasodilation in Fabry disease. Stroke. 32:1559-62. 8. Atkinson TP, Schaffer AA, Grimbacher B, Schroeder HW, Woellner C, Zerbe CS, Puck JM (2001) An immune defect causing dominant chronic mucocutaneous candidiasis and thyroid disease maps to chromosome 2p in a single family. Am J Hum Genet. 69:791-803. 9. Avliyakulov NK, Lukes J, Kajava AV, Liedberg B, Lundstrom I, Svensson SP (2000) Suramin blocks nucleotide triphosphate binding to ribosomal protein L3 from Trypanoplasma borreli. Eur J Biochem. 267:1723-31. 10. Bailey JJ, Berson AS, Handelsman H (2000) Dysrhythmia hazard after hospitalization for myocardial infarction two ECG prognostic methods compared. J Electrocardiol. 33 Suppl:151-4. 11. Bailey JJ, Berson AS, Handelsman H (2000) Dysrhythmia hazard after hospitalization for myocardial infarction: Prognosis by ejection fraction compared with signal-averaged ECG. Comput Cardiol. 27:765-768. 12. Bailey JJ, Berson AS, Handelsman H, Hodges M (2001) Utility of current risk stratification tests for predicting major arrhythmic events after myocardial infarction. J Am Coll Cardiol. 38:1902-1911. 13. Bailey JJ, Hodges M, Church TR (2003) Risk stratification in diabetic patients with a previous myocardial infarction. J Electrocardiol, in press. 14. Bailey MM, Arzbaecher R, Geselowitz DB, Bailey JJ, Berson AS (2000) Revisiting the question will relaxing safe current limits for electromedical equipment increase hazards to patients?. Circulation. 102:823-5. 15. Bailey-Wilson JE, Sorant AJ, Malley JD, Presciuttini S, Redner RA, Severini TA, Badner JA, Pajevic S, Jufer R, Baffoe-Bonnie A, Kao L, Doan BQ, Goldstein JL, Holmes TN, Behneman D, Mandal DM, Turley TN, Weissbecker KA, O'Neill J, Pugh EW (2001) Comparison of novel and existing methods for detection of linkage disequilibrium using parent-child trios in the GAW12 genetic isolate simulated data. Genet Epidemiol. 21 Suppl 1:S378-83. 16. Balbach JJ, Yang J, Weliky DP, Steinbach PJ, Tugarinov V, Anglister J, Tycko R (2000) Probing hydrogen bonds in the antibody-bound HIV-1 gp120 V3 loop by solid state NMR REDOR measurements. J Biomol NMR. 16:313-27. 17. Barker WC, Liow J, Zhao Y, Thada S, Iano-Fletcher AR, Lenox M, Michel C, Johnson CA, Carson RE (2004) Randoms Estimation for List-mode Reconstruction for the ECAT HRRT. 2004 IEEE Nuclear Science Symposium and Medical Imaging Conference, in press. 18. Basser P, Pajevic S (2001) System for analyzing diffusion tensor magnetic resonance images. Patent number: 60135427. Accepted. 19. Basser P, Pajevic S, Pierpaoli C, Aldroubi A (2002) Fiber tract following in the human brain using DT-MRI data. IEICE T INF SYST. E85D:15-21. 20. Basser PJ, Pajevic S (2003) Dealing with uncertainty in DT-MRI data. Isr J Chem. 43:129-144. 21. Batsilas L, Berezhkovskii AM, Shvartsman S (2003) Stochastic model of autocrine and paracrine signals in cell culture assays. Biophys J. 36:3659-3665. 22. Becker KG, Barnes KC, Bright TJ, Wang SA (2003) The Genetic Association Database. Nat Genet. 36:318-321. 23. Belnap DM, Cheng N, Majeed S, Tsang SK, Filman DJ, McDermott Jr. BM, Trus B, Kwong PD, Racaniello VR, Hogle JM, Steven AC (2001) Poliovirus-Receptor Interaction and Conformational Changes During Cell Entry. XVII Biennail Conf on Phage and Virus Assembly, June 30-July 5, 2001, Helsinki, Finland. 2001:22. 24. Belnap DM, Filman DJ, Trus BL, Cheng N, Booy FP, Conway JF, Curry S, Hiremath CN, Tsang SK, Steven AC, Hogle JM (2000) Molecular tectonic model of virus structural transitions: the putative cell entry states of poliovirus. J Virol. 74:1342-54. 25. Belnap DM, McDermott BM, Filman DJ, Cheng N, Trus BL, Zuccola HJ, Racaniello VR, Hogle JM, Steven AC (2000) Three-dimensional structure of poliovirus receptor bound to poliovirus. Proc Natl Acad Sci U S A. 97:73-8. 26. Berezhkovskii A, Bicout D, Szabo A (2001) Irreversible reactions of langevin particles. J Chem Phys. 114:2293-2303. 27. Berezhkovskii A, Bicout D, Weiss G (1999) Collison Model for Actiovated Rate Processes: Turnover Behavior of the Rate Constant. J Chem Phys. 111:11050-11059. 28. Berezhkovskii A, Bicout D, Weiss G (1999) Target and Trapping Problems: From the Ballistic to the Diffusive Regime. J Chem Phys. 110(2):1112-1122. 29. Berezhkovskii A, Szabo A, Weiss G (1999) Reaction dynamics on a thermally fluctuating potential. J Chem Phys. 111:9952-9957. 30. Berezhkovskii A, Szabo A, Weiss G (1999) Theory of single-molecule flurescence spectroscopy of two-state systmes. J Chem Phys. 110(18):9145-9150. 31. Berezhkovskii AM, Barzykin AV (2003) Escape and reentry of a Brownian particle through a hole in a cavity. J Chem Phys. 118:6700-6701. 32. Berezhkovskii AM, Barzykin AV (2004) Diffusive Escape and reentry through a channel in the cavity wall. Chem Phys Lett. 383:6-10. 33. Berezhkovskii AM, Batsilas L, Shvartsman S (2004) Ligand trapping in epithelial layers and cell cultures. Biophys Chem. 107:221-227. 34. Berezhkovskii AM, Bezrukov SM, Bicout DJ, Weiss GH (1999) The influence of polymer on the diffusion of a spherical tracer. J Chem Phys. 111:5641-5644. 35. Berezhkovskii AM, Boguna M, Weiss GH (2001) Evaluation of Rate Constants for Conformational Transitions using Single-Molecule Fluroescence Spectroscopy. Chem Phys Lett. 336:321-324. 36. Berezhkovskii AM, Gopich I (2003) Translation of rod-like polymers through membrane channels. Biophys J. 84:787-793. 37. Berezhkovskii AM, Hummer G (2003) Unsolved problems in noise and fluctuations. In Random walk model for single-file transport of water molecules through carbon nanotubes. AIP (New York, NY) pp. 267-272 38. Berezhkovskii AM, Larralde H, Weiss GH (2001) The region visited by a spherical Brownian particle in the presence of an absorbing boundary. Physical Review E. 64:060124,1-3. 39. Berezhkovskii AM, Makhnovskii YA, Weiss GH (2001) Trapping of Brownian particles by random spheres of different radii. J Chem Phys. 115:5376-5380. 40. Berezhkovskii AM, Pustovoit M, Bezrukov S (2002) Channel-facilitated membrane transport: Transit probability and interaction with the channel. J Chem Phys. 116:9952-9956. 41. Berezhkovskii AM, Pustovoit M, Bezrukov SM (2003) Channel-facilitated membrane transport: Average lifetimes in the channel. J Chem Phys. 119:3943-3951. 42. Berezhkovskii AM, Pustovoit M, Bezrukov SM, Shvartsman S (2003) Channel facilitated membrane transport: Average lifetimes in the channel. J Chem Phys. 119:6973-6978. 43. Berezhkovskii AM, Szabo A (2004) Ensembl eof transition states for two-state protein foldingfrom the eigenvectors of rate matrices. Journal of chemical physics, in press. 44. Berezhkovskii AM, Szabo A, Weiss GH (2000) Theory of Fluorescence of Single Molecules Undergoing Multistate Conformational Dyanics. J Phys Chem B. 104:3776-3780. 45. Berezhkovskii AM, Zitserman VY (2003) Diffusion in a potential field in the presence of a Gaussian sink: Analytic solution of the problem. Russ J Electrochem. 39:53-60. 46. Berezhkovskii AM, Zitserman VY, Shvartsman SY (2003) Diffusivity in periodic arrays of spherical cavities. J Chem Phys. 118:7146-7147. 47. Best CJ, Gillespie JW, Englert CR, Swalwell JI, Pfeifer J, Krizman DB, Petricoin EF, Liotta LA, Emmert-Buck MR (2000) New approaches to molecular profiling of tissue samples. Anal Cell Pathol. 20:1-6. 48. Bezrukov SM, Berezhkovskii AM, Pustovoit MA, Szabo A (2000) Particle number fluctuations in a membrane channel. J Chem Phys. 113:8206-8211. 49. Bicout D, Berezhkovskii AM, Szabo A, Weiss GH (1999) A Kramers-like turnover in activationless rate processes. Phys Rev Lett. 83:1279-1282. 50. Bicout DJ, Berezhkovskii AM, Szabo A, Weiss GH (1999) First Passage Times in Phase Space for the Strong Collison Model. Physical Review E. 59:3702-3705. 51. Bittner M, Dougherty E, Chen Y, Cao N, Kim S, Mousses S, Hewitt S (2003) Can Markov Chain Models Mimic Biological Regulation?. Journal of Biological Systems. 10:9998-9999. 52. Blank PS, Vogel S, Malley JD, Calis KA (2001) A Kinetic Analysis of Calcium-Triggered Exocytosis. J. Gen Phys, in press. 53. Blank PS, Vogel SS, Malley JD, Zimmerberg J (2001) A kinetic analysis of calcium-triggered exocytosis. J Gen Physiol. 118:145-56. 54. Blank PS, Wyatt LS, Montefiori DC, Woodward R, Malley J, Markham P, Vogel TU, Allen TM, Watkins DI, Miller NE (2001) Prime Versus Prime-Boost Vaccinations with a Recombinant Replication-Defective Vaccinia Virus (MVA) Expressing SHIV-89.6 Env-Gag-Pol followed by Soluble Oligometric Env Protein. J Virol, in press. 55. Boguna M, Basser PJ, Pajevic S, Weiss G (2000) Effects of Background Noise on Fiber Tract Trajectories in DT-MRI Data: Theory and Simulations. Magn Reson Med, in press. 56. Boguna M, Berezhkovskii AM, Weiss GH (2000) Occupancy of a Single site by many random walkers. Physical Review E. 62:3250-3256. 57. Boguna M, Berezhkovskii AM, Weiss GH (2000) Residence time densities for non-Markovian systems 1. The two-state system. Physica A. 282:475-485. 58. Boguna M, Berezhkovskii AM, Weiss GH (2000) Residence time densities for non-Markovian systems. 2. The N state system. Physica A. 282:486-494. 59. Boguna M, Kullman L, Bezrukov S, Berezhkovskii A, Weiss G (2001) Rate constants from uncorrelated single-molecule data. J Phys Chem. 105:6246-6250. 60. Boguna M, Masoliver J, Weiss GH (2000) The Asympotolic Form of the Probability Density of Sojourn Times in Randomly Changing Multistate Systems. Physica A. 284:13-22. 61. Boguna M, Masoliver J, Weiss GH (2001) A discrete formulation of the theory of sojourn times in a two-state system. Physica A. 289:301-320. 62. Boissinot S, Entezam A, Young L, Munson PJ, Furano AV (2004) The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 14:1221-31. 63. Bonner RF, Goldstein S, Smith PD, Pohida T (2002) Designs for Non-Contact Laser Capture Microdissection. Patent number: 6,420,132. Accepted. 64. Bonner RF, Goldstein S, Smith PD, Pohida T (2002) Precision Laser Capture Microdissection Utilizing Short Pulse Length. Patent number: 6,420,132 B1. Accepted. 65. Bonnet-Gonnet C, Leikin S, Chi S, Rau D, Parsegian V (2001) Measurement of Forces between Hydroxypropylcellulose Polymers: Temperature Favored Assembly and Salt Exclusion. J Phys Chem B. 105:1877-1886. 66. Braun AR, Pohida T (2002) Lateralized brain activation during categorical perception for auditory stimuli: an fMRI study. Cognitive Neuroscience Society Meeting 2002. 2002:unknown. 67. Burklow TR, Moak JP, Bailey JJ, Makhlouf FT (1999) Neurally mediated cardiac syncope autonomic modulation after normal saline infusion. J Am Coll Cardiol. 33:2059-66. 68. Carlisle AJ, Prabhu VV, Elkahloun A, Hudson J, Trent JM, Linehan WM, Williams ED, Emmert-Buck MR, Liotta LA, Munson PJ, Krizman DB (2000) Development of a prostate cDNA microarray and statistical gene expression analysis package. Mol Carcinog. 28:12-22. 69. Carson RE, Barker C, Liow J, Johnson CA (2003) Design of a Motion-Compensation OSEM List-mode Algorithm for Resolution-Recovery Reconstruction for the HRRT. 2003 IEEE Nuclear Science Symposium and Medical Imaging Conference Record. :M16-6. 70. Caston JR, Belnap DM, Steven AC, Trus BL (1999) A strategy for determining the orientations of refractory particles for reconstruction from cryo-electron micrographs with particular reference to round, smooth-surfaced, icosahedral viruses. J Struct Biol. 125:209-15. 71. Cerritelli ME, Conway JF, Cheng N, Trus B, Steven AC (2002) Molecular Mechanisms in Bacteriophage T7 Procapsid Assembly, Maturation and DNA Containment. In Virus Structure. Academic Press (London) pp. 301-324 72. Cerritelli ME, Conway JF, Cheng N, Trus B, Steven AC (2003) Molecular Mechanisms in Bacteriophage T7 Procapsid Assembly, Maturation, and DNA Containment. In Advances in Protein Chemistry: Vol 64, Virus Structure. Academic Press (Amsterdam, The Netherlands) pp. 301-324 73. Cerritelli ME, Conway JF, Cheng N, Trus BL, Steven AC (2003) Molecular mechanisms in bacteriophage T7 procapsid assembly, maturation, and DNA containment. Adv Protein Chem. 64:301-23. 74. Cerritelli ME, Trus BL, Smith CS, Cheng N, Conway JF, Steven AC (2003) A second symmetry mismatch at the portal vertex of bacteriophage T7 8-fold symmetry in the procapsid core. J Mol Biol. 327:1-6. 75. Chairamonte MG, Cheever A, Malley JD, Donaldson D, Wynn TA (2001) Interleukin-13 antagonism as a Treatment for Established and Progressive Liver Fibrosis. Hepatology, in press. 76. Cheng N, Trus BL, Belnap DM, Newcomb WW, Brown JC, Steven AC (2002) Handedness of the herpes simplex virus capsid and procapsid. J Virol. 76:7855-9. 77. Cheung H, Fann Y, Wang SA, Upender B, Frazin A, Lingham R, Chinatala S, Pecjak F, Wang G, Kellogg M, Martino RL, Johnson CA (2004) A Web-Based Protocol Tracking Management System for Clinical Research. 17th IEEE Symposium on Computer-Based Medical Systems, in press. 78. Chi-Fishman G, Sonies BC, Ohazama CJ, Freidlin R (2000) Real-time 3-D ultrasound imaging of lingual action during swallowing. Dysphagia. 15:106. 79. Chiaramonte MG, Cheever AW, Malley JD, Donaldson DD, Wynn TA (2001) Studies of murine schistosomiasis reveal interleukin-13 blockade as a treatment for established and progressive liver fibrosis. Hepatology. 34:273-82. 80. Chu R, Takei J, Knowlton JR, Andrykovitch M, Pei W, Kajava AV, Steinbach PJ, Ji X, Bai Y (2002) Redesign of a four-helix bundle protein by phage display coupled with proteolysis and structural characterization by NMR and X-ray crystallography. J Mol Biol. 323:253-62. 81. Church TR, Hodges M, Bailey JJ (2002) Risk stratification applied to CAST registry data: Combining 9 predictors. J Electrocardiol. 35 (supplement):117-122. 82. Clore GM, Kuszewski J (2002) Chi(1) rotamer populations and angles of mobile surface side chains are accurately predicted by a torsion angle database potential of mean force. J Am Chem Soc. 124:2866-7. 83. Clore GM, Kuszewski J (2002) Chi(1) rotamer populations and angles of mobile surface side chains are accurately predicted by a torsion angle database potential of mean force. J Am Chem Soc. 124:2866-7. 84. Clore GM, Kuszewski J (2003) Improving the accuracy of NMR structures of RNA by means of conformational database potentials of mean force as assessed by complete dipolar coupling cross-validation. J Am Chem Soc. 125:1518-25. 85. Clore GM, Kuszewski JJ (2002) chi(1) Rotamer populations and angles of mobile surface side chains are accurately predicted by a torsion angle database potential of mean force. J Am Chem Soc. 124(12):2866-2867. 86. Clore GM, Schwieters CD (2002) Theoretical and computational advances in biomolecular NMR spectroscopy. Curr Opin Struct Biol. 12:146-53. 87. Clore GM, Schwieters CD (2002) Theoretical and computational advances in biomolecular NMR spectroscopy. Curr Opin Struct Biol. 12:146-53. 88. Clore GM, Schwieters CD (2003) Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics. J Am Chem Soc. 125:2902-12. 89. Clore GM, Schwieters CD (2004) Amplitudes of protein backbone dynamics and correlated motions in a small alpha/beta protein: correspondence of dipolar coupling and heteronuclear relaxation measurements. Biochemistry. 43:10678-91. 90. Clore GM, Schwieters CD (2004) How much backbone motion in ubiquitin is required to account for dipolar coupling data measured in multiple alignment media as assessed by independent cross-validation?. J Am Chem Soc. 126:2923-38. 91. Cohen J, Hansen PL, Podgornik R, Parsegian VA (2002) Surface-Grafted PEG Polymers Osmotically Compressed Between Phospholipid Multilayers Obey Brush Scaling Laws. Biophys J, in press. 92. Costagliola S, Sunthorntepvarakul T, Migeotte I, Van Sande J, Kajava AM, Refetoff S, Vassart G (1999) Structure-function relationships of two loss-of-function mutations of the thyrotropin receptor gene. Thyroid. 9:995-1000. 93. Cui X, Danner R, Munson PJ, Gerstenberger E (2002) Oligonucleotide microarrays identify genes, including one for THFsr with changes in expression dependent on infecting dose of E. coli in rats. Am J Respir Crit Care Med. 165 (8):A521. 94. Dagdug L, Berezhkovskii AM, Bezrukov SM, Weiss G (2003) Diffusion-controlled reactions with a binding site hidden in a channel. J Chem Phys. 118:2367-2373. 95. Dagdug L, Berezhkovskii AM, Shvartsman S, Weiss GH (2003) Equilibration in two chambers connected by a capillary. J Chem Phys. 119:12473-12478. 96. Dagdug L, Berezhkovskii AM, Weiss GH (2002) Number of distinct sites visited by a random walker trapped by an absorbing boundary. Phys Rev E Stat Nonlin Soft Matter Phys. 66:012901. 97. Dagdug L, Berezhkovskii AM, Weiss GH (2003) Smoluchowski-like theory for trapping kinetics in a slab. Physica A. 318:341-346. 98. Dagdug L, Berezhkovskii AM, Weiss GH (2003) Smoluchowski-like theory for trapping kinetics in a slab. Physica A. 318:341-346. 99. Dagdug L, Berezhkovskii AM, Weiss GH (2004) The kinetics of ligand equilibration between tubular and vesicular parts of the endosome. Phys Rev E. 69:0129014pp. 100. Dagdug L, Weiss G (2003) Absorptive effects on a parameter used to characterize the region of tissue visited by photons in continuous wave experiments. Opt Commun. 226:149-154. 101. Dagdug L, Weiss G (2004) Suggested parameter to estimate the region probed by photons in laser-based measurements. J. Mod. Opt.. 51:469-478. 102. Dagdug L, Weiss GH, Gandjbakhche AH (2003) Effects of anisotropic optical properties on photon migration in structured tissues. Phys Med Biol. 48:1361-70. 103. Daoud SS, Munson PJ, Reinhold W, Young L, Prabhu VV, Yu Q, LaRose J, Kohn KW, Weinstein JN, Pommier Y (2003) Impact of p53 knockout and topotecan treatment on gene expression profiles in human colon carcinoma cells a pharmacogenomic study. Cancer Res. 63:2782-93. 104. Davison AJ, Trus BL, Cheng N, Steven AC, Watson MS, Cunningham C, Le Deuff RM, Renault T (2004) A novel class of herpesvirus with bivalve hosts. J Gen Virol, in press. 105. Deans KJ, Minneci PC, Hergen A, Logun C, Sittler K, Barb J, Munson PJ, Danner RL, Solomon MA (2004) Gene Expression Profiles in a Rat Heart Transplant Model of Acute Cellular Rejection. , Am J Transplant. 8(Suppl 4):308(A545). 106. Desai KV, Xiao N, Wang W, Gangi L, Greene J, Powell JI, Dickson R, Furth P, Hunter K, Kucherlapati R, Simon R, Liu ET, Green JE (2002) Initiating oncogenic event determines gene-expression patterns of human breast cancer models. Proc Natl Acad Sci U S A. 99:6967-72. 107. Devedjiev Y, Dauter Z, Kuznetsov SR, Jones TL, Derewenda ZS (2000) Crystal structure of the human acyl protein thioesterase I from a single X-ray data set to 1.5 A. Structure Fold Des. 8:1137-46. 108. Dhanvantari S, Arnaoutova I, Snell CR, Steinbach PJ, Hammond K, Caputo GA, London E, Loh Y (2002) Carboxypeptidase E,a prohormone sorting receptor, is anchored to secretory granules via a C-terminal transmembrane insertion. Biochemistry. 41:52-60. 109. Di Francesco V PJ, Munson J, Garnier J (1999) FORESST: fold recognition from secondary structure predictions of proteins. Bioinformatics. 15:131-40. 110. Dishon M, Taitelbaum H, Weiss GH (2003) Effects of the scattering coefficients on width estimates in a two-layer medium. Journal of Modern Optics. 50:2727-2740. 111. Druey KM, Ugur O, Caron JM, Chen CK, Backlund PS, Jones TL (1999) Amino-terminal cysteine residues of RGS16 are required for palmitoylation and modulation of Gi- and Gq-mediated signaling. J Biol Chem. 274:18836-42. 112. Dudko O, Berezhkovskii AM, Weiss GH (2004) Rate constant for diffusion-influenced ligand binding to receptors of arbitrary shape on a cell surface. J Chem Phys. 121:1562-1565. 113. Dudko O, Weiss GH, Chernomordik V, Gandjbakhche A (2004) Photon Migration in Turbid media with Anisotropic Optical Properties. Phys Med Biol. 49:3979-3980. 114. Earl PL, Wyatt LS, Montefiori DC, Bilska M, Woodward R, Markham PD, Malley JD, Vogel TU, Allen TM, Watkins DI, Miller N, Moss B (2002) Comparison of vaccine strategies using recombinant env-gag-pol MVA with or without an oligomeric Env protein boost in the SHIV rhesus macaque model. Virology. 294:270-81. 115. Edgerton ME, Taylor R, Powell JI, Hunter L, Simon R, Liu ET (2002) A bioinformatics tool to select sequences for microarray studies of mouse models of oncogenesis. Bioinformatics. 18:774-5. 116. Eisenhofer G, Huynh T, Pacak K, Brouwers FM, Walther M, Linehan WM, Munson PJ, Mannelli M, Goldstein DS, Elkahloun AG (2004) Distinct gene expression profiles in norepinephrine and epinephrine producing hereditary and sporadic pheochromocytomas: Activation of hypoxia-driven angiogenic pathways in von Hippel-Lindau syndrome. Endocrine-related Cancer, in press. 117. Elvev?g B, Kerbs KM, Malley JD, Seeley E, Goldberg TE (2003) Autobiographical memory in schizophrenia an examination of the distribution of memories. Neuropsychology. 17:402-9. 118. Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, Hillier LW, Katz KS, Klausner RD, Kuznetzov V, Lash AE, Lennon G, Linehan WM, Liotta LA, Marra MA, Munson PJ, Ornstein DK, Prabhu VV, Prang C, Schuler GD, Soares MB, Tolstoshev CM, Vocke CD, Waterston RH (2000) Molecular profiling of clinical tissues specimens feasibility and applications. J Mol Diagn. 2:60-6. 119. Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, Hillier LW, Katz KS, Klausner RD, Kuznetzov V, Lash AE, Lennon G, Linehan WM, Liotta LA, Marra MA, Munson PJ, Ornstein DK, Prabhu VV, Prange C, Schuler GD, Soares MB, Tolstoshev CM, Vocke CD, Waterston RH (2000) Molecular profiling of clinical tissue specimens: feasibility and applications. Am J Pathol. 156:1109-15. 120. Filizola M, Hassan SA, Artoni A, Coller BS, Weinstein H (2004) Mechanistic insights from a refined three-dimensional model of integrin alphaIIbbeta3. J Biol Chem. 279:24624-30. 121. Gandjbakhche AH, Weiss GH (2000) Descriptive parameter for photon trajectories in a turbid medium. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 61:6958-62. 122. Ganguly S, Mummaneni P, Steinbach PJ, Klein DC, Coon SL (2001) Characterization of the Saccharomyces cerevisiae homolog of the melatonin rhythm enzyme arylalkylamine N-acetyltransferase (EC 2.3.1.87). J Biol Chem. 276:47239-47. 123. Geetha V, Di Francesco V, Garnier J, Munson PJ (1999) Comparing protein sequence-based and predicted secondary structure-based methods for identification of remote homologs. Protein Eng. 12:527-34. 124. Giesel F, Hvizda J, McAuliffe BLMJ, McGarry DP, von Tengegg-Kobligk H, Wood BJ (2002) Multi-parametric Image Fusion for Navigation and Follow up in Radiofrequency Tumor Ablation. Radiological Society of North America, in press. 125. Gius D, Cui H, Bradbury M, Cook J, Smart DK, Zhao S, Young L, Brandenburg SA, Hu Y, Bisht KS, Ho aS, Mattson D, Sun L, Munson PJ, Chuang EY, Mitchel JB, Feinberg AP (2004) Distinct Effects on Gene Expression of Chemical and Genetic Manipulation of the Cancer Epigenome Revealed by a Multimodality Approach. 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