R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7488713|pir||T08896 Sali3-2 protein, aluminium-induced - soybean
>gi|2317900|gb|AAB66369.1| (U89693) Sali3-2 [Glycine max]
Length = 276
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 499 (175.7 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 110/176 (62%), Positives = 129/176 (73%), Frame = +2
Query: 2 HEQPYGVYTWLTDIKDTSKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKNI 181
+ QPYGVYTWLTDIKDTSKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKNI
Sbjct: 97 YAQPYGVYTWLTDIKDTSKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKNI 156
Query: 182 QVLSSSFVNKQEQYTVEGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLS-MVPLVAG 358
QVLSSSFVNKQEQYTVEGV ++ + + HGLNFR ++ + +++ + +VPLVAG
Sbjct: 157 QVLSSSFVNKQEQYTVEGV-QNLGDKAVMCHGLNFRTAVFYC--HKVRETTAFVVPLVAG 213
Query: 359 DGTKTPALAVCPSXYFWNESSHAS*LLGFDP*TX-LLPFPWNQAFXGSPFSXDLPTXY 529
DGTKT ALAVC S L+G DP T + F ++A P + + T Y
Sbjct: 214 DGTKTQALAVCHSDTSGMNHHILHELMGVDPGTNPVCHFLGSKAILWVP-NISMDTAY 270
>gi|485515|pir||S33622 ADR6 protein - soybean >gi|296445|emb|CAA49340.1|
(X69639) auxin down regulated [Glycine max]
>gi|2304955|gb|AAB65592.1| (U64866) similar to ADR6 encoded by
GenBank Accession Number X69639; aluminum induced [Glycine max]
Length = 272
Frame 2 hits (HSPs): ____________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM02982: 18..258
__________________
Plus Strand HSPs:
Score = 457 (160.9 bits), Expect = 2.8e-42, P = 2.8e-42
Identities = 96/151 (63%), Positives = 115/151 (76%), Frame = +2
Query: 5 EQPYGVYTWLTDIKDTSKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKNIQ 184
+QP+GV TWL +IKDT+KEGYSFEE+CIKKEA EGEEKFCAKSLGTVIGFAISKLGKNIQ
Sbjct: 94 QQPWGVGTWLKEIKDTTKEGYSFEELCIKKEAIEGEEKFCAKSLGTVIGFAISKLGKNIQ 153
Query: 185 VLSSSFVNKQEQYTVEGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLS-MVPLVAGD 361
VLSSSFVNKQ+QYTVEGV ++ + + H LNFR ++ + +++ + MVPLVAGD
Sbjct: 154 VLSSSFVNKQDQYTVEGV-QNLGDKAVMCHRLNFRTAVFYC--HEVRETTAFMVPLVAGD 210
Query: 362 GTKTPALAVCPSXYFWNESSHAS*LLGFDP*T 457
GTKT ALA+C S L+G DP T
Sbjct: 211 GTKTQALAICHSNTSGMNHQMLHQLMGVDPGT 242
>gi|2129886|pir||S70755 hypothetical protein - garden pea
>gi|20914|emb|CAA38756.1| (X55012) unknown seed protein [Pisum
sativum]
Length = 221
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 45/113 (39%), Positives = 59/113 (52%), Frame = +2
Query: 53 SKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKN-IQVLSSSFVNKQEQYTV 229
+K+ S E+ C A E K C SL ++I IS G I+ +SS+F Q+QY V
Sbjct: 76 NKDEQSLEDFCYSPTAI-AEHKHCVSSLNSMIDEVISHFGTTKIKAISSNFAQNQDQYDV 134
Query: 230 EGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLSMVPLVAGDGTKTPALAVC 391
E V + +++ + H LNF N F K MV LVA DGTKT AL VC
Sbjct: 135 EEVKKV-SENAVMCHRLNFENV-VFNCHQVSKTTAYMVSLVASDGTKTNALTVC 186
Score = 56 (19.7 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 10/29 (34%), Positives = 18/29 (62%), Frame = +3
Query: 402 TSGMNPPMLHDSWDLIP-ELXCCHSLGTR 485
T GMNP +L+++ + P + CH +G +
Sbjct: 190 TRGMNPELLYEALQVTPGTVPVCHFIGNK 218
>gi|119097|sp|P21747|EA92_VICFA EMBRYONIC ABUNDANT PROTEIN USP92 PRECURSOR
>gi|82002|pir||S04136 embryonic abundant protein precursor (clone
pUSP92) - tick bean >gi|22051|emb|CAA31602.1| (X13210) USP
precursor [Vicia faba]
Length = 268
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _____________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Domain: 3 X 6 AA APPROXIMATE REPEATS. 50..106
Entrez Repetitive region: 1-1. 50..55
Entrez Repetitive region: 1-2. 83..88
Entrez Repetitive region: 1-3. 101..106
Entrez Domain: 2 X APPROXIMATE REPEATS. 166..222
Entrez Repetitive region: 2-1. 166..183
Entrez Repetitive region: 2-2. 202..222
Entrez glycosylation site: POTENTIAL. 259
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 44/113 (38%), Positives = 58/113 (51%), Frame = +2
Query: 53 SKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKN-IQVLSSSFVNKQEQYTV 229
+KE SFE+ C A E K C SL ++I IS G I+ +SS+F Q+QY V
Sbjct: 110 NKEKQSFEDFCYSPTAI-AEHKHCVSSLKSMIDQVISHFGSTKIKAISSNFAPYQDQYVV 168
Query: 230 EGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLSMVPLVAGDGTKTPALAVC 391
E V + ++ + H LNF F + +V LVA DGTKT AL VC
Sbjct: 169 EDVKKVG-DNAVMCHRLNFEKV-VFNCHQVRETTAYVVSLVASDGTKTKALTVC 220
Score = 58 (20.4 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 10/29 (34%), Positives = 19/29 (65%), Frame = +3
Query: 402 TSGMNPPMLHDSWDLIP-ELXCCHSLGTR 485
T GMNP +L+++ ++ P + CH +G +
Sbjct: 224 TRGMNPELLYEALEVTPGTVPVCHFIGNK 252
>gi|100102|pir||S14068 seed protein precursor - tick bean
>gi|22043|emb|CAA39696.1| (X56240) unknown seed protein [Vicia
faba]
Length = 268
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _____________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez domain: signal sequence 1..22
__________________
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 43/113 (38%), Positives = 56/113 (49%), Frame = +2
Query: 53 SKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKN-IQVLSSSFVNKQEQYTV 229
+KE S E+ C A E K C SL ++I IS G I+ +SS+F Q+QY V
Sbjct: 110 NKEKQSLEDFCYSPTAI-AEHKHCVSSLKSMIDQVISHFGSTKIKAISSNFAPYQDQYVV 168
Query: 230 EGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLSMVPLVAGDGTKTPALAVC 391
E V + ++ + H LNF F +V LVA DGTKT AL VC
Sbjct: 169 EDVKKVG-DNAVMCHRLNFEKV-VFNCHQVRDTTAYVVSLVASDGTKTKALTVC 220
Score = 58 (20.4 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 10/29 (34%), Positives = 19/29 (65%), Frame = +3
Query: 402 TSGMNPPMLHDSWDLIP-ELXCCHSLGTR 485
T GMNP +L+++ ++ P + CH +G +
Sbjct: 224 TRGMNPELLYEALEVTPGTVPVCHFIGNK 252
>gi|119095|sp|P21745|EA30_VICFA EMBRYONIC ABUNDANT PROTEIN VF30.1 PRECURSOR
>gi|82003|pir||S05471 embryonic abundant protein precursor (clone
USP Vf30.1) - tick bean
Length = 268
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _____________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM02982: 17..258
Entrez Domain: 3 X 6 AA APPROXIMATE REPEATS. 50..106
Entrez Repetitive region: 1-1. 50..55
Entrez Repetitive region: 1-2. 83..88
Entrez Repetitive region: 1-3. 101..106
Entrez Domain: 2 X APPROXIMATE REPEATS. 166..222
Entrez Repetitive region: 2-1. 166..183
Entrez Repetitive region: 2-2. 202..222
Entrez glycosylation site: POTENTIAL. 259
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 43/113 (38%), Positives = 56/113 (49%), Frame = +2
Query: 53 SKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKN-IQVLSSSFVNKQEQYTV 229
+KE S E+ C A E K C SL ++I IS G I+ +SS+F Q+QY V
Sbjct: 110 NKEKQSLEDFCYSPTAI-AEHKHCVSSLKSMIDQVISHFGSTKIKAISSNFAPYQDQYVV 168
Query: 230 EGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLSMVPLVAGDGTKTPALAVC 391
E V + ++ + H LNF F +V LVA DGTKT AL VC
Sbjct: 169 EDVKKVG-DNAVMCHRLNFEKV-VFNCHQVRDTTAYVVSLVASDGTKTKALTVC 220
Score = 58 (20.4 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 10/29 (34%), Positives = 19/29 (65%), Frame = +3
Query: 402 TSGMNPPMLHDSWDLIP-ELXCCHSLGTR 485
T GMNP +L+++ ++ P + CH +G +
Sbjct: 224 TRGMNPELLYEALEVTPGTVPVCHFIGNK 252
>gi|135067|sp|P09059|SVF3_VICFA UNKNOWN SEED PROTEIN 30.1 PRECURSOR (VF30.1)
>gi|82000|pir||S03328 embryonic abundant protein precursor (clone
pUSP14) - tick bean >gi|22046|emb|CAA31626.1| (X13242) seed protein
[Vicia faba]
Length = 268
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _____________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 43/113 (38%), Positives = 56/113 (49%), Frame = +2
Query: 53 SKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKN-IQVLSSSFVNKQEQYTV 229
+KE S E+ C A E K C SL ++I IS G I+ +SS+F Q+QY V
Sbjct: 110 NKEKQSLEDFCYSPTAI-AEHKHCVSSLKSMIDQVISHFGSTKIKAISSNFAPYQDQYVV 168
Query: 230 EGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLSMVPLVAGDGTKTPALAVC 391
E V + ++ + H LNF F +V LVA DGTKT AL VC
Sbjct: 169 EDVKKVG-DNAVMCHRLNFEKV-VFNCHQVRDTTAYVVSLVASDGTKTKALTVC 220
Score = 52 (18.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 9/29 (31%), Positives = 19/29 (65%), Frame = +3
Query: 402 TSGMNPPMLHDSWDL-IPELXCCHSLGTR 485
T GMNP +L+++ ++ + + CH +G +
Sbjct: 224 TRGMNPELLYEALEVTLGTVPVCHFIGNK 252
>gi|119096|sp|P21746|EA87_VICFA EMBRYONIC ABUNDANT PROTEIN USP87 PRECURSOR
>gi|82001|pir||S04135 embryonic abundant protein precursor (clone
pUSP87) - tick bean >gi|22049|emb|CAA31603.1| (X13211) USP
precursor [Vicia faba]
Length = 268
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _____________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Domain: 3 X 6 AA APPROXIMATE REPEATS. 50..106
Entrez Repetitive region: 1-1. 50..55
Entrez Repetitive region: 1-2. 83..88
Entrez Repetitive region: 1-3. 101..106
Entrez Domain: 2 X APPROXIMATE REPEATS. 166..222
Entrez Repetitive region: 2-1. 166..183
Entrez Repetitive region: 2-2. 202..222
Entrez glycosylation site: POTENTIAL. 259
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 43/113 (38%), Positives = 56/113 (49%), Frame = +2
Query: 53 SKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKN-IQVLSSSFVNKQEQYTV 229
+KE S E+ C A E K C SL ++I IS G I+ +SS+F Q+QY V
Sbjct: 110 NKEKQSLEDFCYSPTAI-AEHKHCVSSLKSMIDQVISHFGSTKIKAISSNFAPYQDQYVV 168
Query: 230 EGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLSMVPLVAGDGTKTPALAVC 391
E V + ++ + H LNF F +V LVA DGTKT AL VC
Sbjct: 169 EDVKKVG-DNAVMCHRLNFEKV-VFNCHQVRDTTAYVVSLVASDGTKTKALTVC 220
Score = 52 (18.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 9/29 (31%), Positives = 19/29 (65%), Frame = +3
Query: 402 TSGMNPPMLHDSWDL-IPELXCCHSLGTR 485
T GMNP +L+++ ++ + + CH +G +
Sbjct: 224 TRGMNPELLYEALEVTLGTVPVCHFIGNK 252
>gi|7488827|pir||T06815 probable embryonic abundant protein - garden pea
(fragment) >gi|20912|emb|CAA38755.1| (X55011) internal part of pea
Unknown Seed Protein (USP) [Pisum sativum]
Length = 221
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 40/113 (35%), Positives = 55/113 (48%), Frame = +2
Query: 53 SKEGYSFEEICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKN-IQVLSSSFVNKQEQYTV 229
+K+ S E+ C A E K C SL ++I IS G+ I+ +SS+ Q+QY
Sbjct: 76 NKDEQSLEDFCYSPTAI-AEHKHCVSSLNSMIDEVISHFGQTKIKAISSNSAQNQDQYAW 134
Query: 230 EGVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQLSMVPLVAGDGTKTPALAVC 391
E V + +++ + H LN N F K MV LVA DG KT L VC
Sbjct: 135 EEV-KIVTENAVMCHRLNSDNV-VFNCHQVSKTTAYMVSLVASDGYKTNDLTVC 186
Score = 56 (19.7 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 10/29 (34%), Positives = 18/29 (62%), Frame = +3
Query: 402 TSGMNPPMLHDSWDLIP-ELXCCHSLGTR 485
T GMNP +L+++ + P + CH +G +
Sbjct: 190 TRGMNPELLYEALQVTPGTVPVCHFIGNK 218
>gi|1172874|sp|Q08298|RD22_ARATH DEHYDRATION-RESPONSIVE PROTEIN RD22 PRECURSOR
>gi|479589|pir||S34823 dehydration-induced protein RD22 -
Arabidopsis thaliana >gi|391608|dbj|BAA01546.1| (D10703) rd22
[Arabidopsis thaliana] >gi|447134|prf||1913421A rd22 gene
[Arabidopsis thaliana]
Length = 392
Frame 2 hits (HSPs): _____________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 392
0 150 300
__________________
Annotated Domains:
DOMO DM02982: 118..391
Entrez Domain: 5 X APPROXIMATE REPEATS. 57..164
Entrez Repetitive region: 1. 57..75
Entrez Repetitive region: 2. 78..97
Entrez Repetitive region: 3. 100..120
Entrez Repetitive region: 4. 125..142
Entrez Repetitive region: 5. 145..164
PRODOM PD122867: RD22_ARATH 1..167
PRODOM PD004669: 169..390
__________________
Plus Strand HSPs:
Score = 125 (44.0 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 48/162 (29%), Positives = 77/162 (47%), Frame = +2
Query: 11 PYGVYTWLTDIKDTSKEGYSFEEICIKK-----EA--FEGEEKFCAKSLGTVIGFAISKL 169
P+G + +K S E S E +KK EA GEEK+CA SL +++ F++SKL
Sbjct: 214 PFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKL 273
Query: 170 GK-NIQVLSSSFVNKQ---EQYTVE--GVAESWRQSSDVVHGLNFRNCSYFTAINPLKQQ 331
GK +++ +S+ K ++Y + GV + S V H + + F +
Sbjct: 274 GKYHVRAVSTEVAKKNAPMQKYKIAAAGVKKLSDDKSVVCHKQKYP-FAVFYCHKAMMTT 332
Query: 332 LSMVPLVAGDGTKTPALAVC-PSXYFWNESSHAS*LLGFDP*T 457
+ VPL +G + A+AVC + WN + A +L P T
Sbjct: 333 VYAVPLEGENGMRAKAVAVCHKNTSAWNPNHLAFKVLKVKPGT 375
>gi|7106540|dbj|BAA92225.1| (AB038692) similar to the BURP domain [Vigna
unguiculata]
Length = 132
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.00027, P = 0.00027
Identities = 35/114 (30%), Positives = 59/114 (51%), Frame = +2
Query: 125 AKSLGTVIGFAISKLGKNIQVLSSSFVNKQ---EQYTVE-GVAESWRQSSDVVHGLNFRN 292
A SL +++ F+ SKLGKN+ VLS+ V+++ +QYT+ GV + ++ V H ++
Sbjct: 2 ATSLESMVDFSTSKLGKNVAVLSTE-VDQETGLQQYTIAPGVKKVSGDNAVVCHKQSYPY 60
Query: 293 CSYFTAINPLKQQLSMVPLVAGDGTKTPALAVCPSXYF-WNESSHAS*LLGFDP*T 457
++ + VPL +G + A+AVC + WN A +L P T
Sbjct: 61 AVFYCHKTETTRTYP-VPLEGANGIRVKAVAVCHTDTSQWNPKHLAFEVLKVKPGT 115
>gi|451592|gb|AAA18047.1| (U04982) vpx [Simian immunodeficiency virus]
>gi|451644|gb|AAA18090.1| (U04991) vpx [Simian immunodeficiency
virus]
Length = 91
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.5, P = 0.77
Identities = 17/49 (34%), Positives = 27/49 (55%), Frame = +1
Query: 112 REVLCKILGNSNWFCHFKAGKEHSST-FKFLC--Q*ARAIHCGRSCRIL 249
RE++ ++ S + H + G S T +++LC Q A +HC R CR L
Sbjct: 21 RELIFQVWRRSWEYWHDEMGMSESYTKYRYLCLIQKALFVHCKRGCRCL 69
>gi|451604|gb|AAA18057.1| (U04984) vpx [Simian immunodeficiency virus]
Length = 91
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.5, P = 0.77
Identities = 17/49 (34%), Positives = 27/49 (55%), Frame = +1
Query: 112 REVLCKILGNSNWFCHFKAGKEHSST-FKFLC--Q*ARAIHCGRSCRIL 249
RE++ ++ S + H + G S T +++LC Q A +HC R CR L
Sbjct: 21 RELIFQVWQRSWEYWHDEMGMSESYTKYRYLCLIQKALFVHCKRGCRCL 69
>gi|7462014|pir||T11554 vpx protein - simian immunodeficiency virus SIVsm
(strain 62) (fragment) >gi|451610|gb|AAA18062.1| (U04985) vpx
[Simian immunodeficiency virus]
Length = 91
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.5, P = 0.77
Identities = 17/49 (34%), Positives = 27/49 (55%), Frame = +1
Query: 112 REVLCKILGNSNWFCHFKAGKEHSST-FKFLC--Q*ARAIHCGRSCRIL 249
RE++ ++ S + H + G S T +++LC Q A +HC R CR L
Sbjct: 21 RELIFQVWRRSWEYWHDEMGMSESYTKYRYLCLIQKALFVHCKRGCRCL 69
>gi|9719737|gb|AAF97839.1|AC034107_22 (AC034107) ESTs gb|T22732, gb|AA585816
come from this gene. [Arabidopsis thaliana]
Length = 85
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 5.2, P = 0.99
Identities = 22/75 (29%), Positives = 33/75 (44%), Frame = +2
Query: 80 ICIKKEAFEGEEKFCAKSLGTVIGFAISKLGKNIQVLSSSFVNKQEQYTVEGVAES-WRQ 256
+C + E E + + L T +G AIS G V+S+S + G A S WR
Sbjct: 8 VCCGSDVLEVESCYDSLRLWTPVGVAISSRGS--AVVSASATTAEVDREKVGSANSPWRL 65
Query: 257 SSDVVHGLNFRNCSYF 304
+ D+ + R S F
Sbjct: 66 TVDLPRFVGCRGFSVF 81
>gi|451598|gb|AAA18052.1| (U04983) vpx [Simian immunodeficiency virus]
>gi|451616|gb|AAA18067.1| (U04986) vpx [Simian immunodeficiency
virus] >gi|451622|gb|AAA18072.1| (U04987) vpx [Simian
immunodeficiency virus] >gi|451628|gb|AAA18077.1| (U04988) vpx
[Simian immunodeficiency virus] >gi|451639|gb|AAA18086.1| (U04990)
vpx [Simian immunodeficiency virus]
Length = 91
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 6.4, P = 1.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Frame = +1
Query: 112 REVLCKILGNSNWFCHFKAGKEHSST-FKFLC--Q*ARAIHCGRSCRIL 249
RE++ ++ S + H + G S T +++LC Q A +HC + CR L
Sbjct: 21 RELIFQVWRRSWEYWHDEMGMSESYTKYRYLCLIQKALFVHCKKGCRCL 69
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.338 0.149 0.529
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.325 0.140 0.453
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.354 0.159 0.641
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.325 0.137 0.443
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.344 0.151 0.548
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.343 0.153 0.519
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 209 198 10. 76 3 12 22 0.093 35
31 0.10 38
+2 0 209 197 10. 76 3 12 22 0.092 35
31 0.10 38
+1 0 210 199 10. 77 3 12 22 0.093 35
31 0.10 38
-1 0 210 198 10. 76 3 12 22 0.093 35
31 0.10 38
-2 0 209 198 10. 76 3 12 22 0.093 35
31 0.10 38
-3 0 209 197 10. 76 3 12 22 0.092 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 16
No. of states in DFA: 592 (58 KB)
Total size of DFA: 245 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 212.91u 0.99s 213.90t Elapsed: 00:00:36
Total cpu time: 212.97u 0.99s 213.96t Elapsed: 00:00:36
Start: Mon Oct 1 21:13:49 2001 End: Mon Oct 1 21:14:25 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000