NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Report in Submission Format
SNP:  Handle|local_snp_id:   SI_MHC_SNP | AL671277.5_35875_GT
  NCBI Assay Id(ss#):    ss12681865
  Reference SNP Id(rs#): rs2735086

Batch Detail:
Submitter Handle:           SI_MHC_SNP
Submitter Batch ID:         2005_03_29
Entry Date:                 Mar 29, 2005
Molecular type:             Genomic
No. of Chromosomes sampled: 4
Synonym defined:            
Organism:                   Homo sapiens
Population:                 Not submitted
Submitter Method ID:        MHC_XM20030904
Citation:
   1. Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

   View citation details:[1] 

  SubSNP Detail:
  NCBI Assay ID:       ss12681865
  Submitter SNP ID:    AL671277.5_35875_GT
  Synonyms:            
  LOCUSID:             Not submitted
  Submitter STS ID:    Not submitted
  STS Accession:       Not submitted
  GenBanK Accession:   AL671277.5 
  Comment:
     sequence: CR759913.4
     position: 60140
     quality: [40]
     sequence: CR388220.8
     position: 115932
     quality: [40]
     sequence: AL645935.7
     position: 65240
     quality: [40]

  Gene Name:           
  Length:              801
  Flanking Sequence Information:

  5' Assay:   GAGTTGGCTT GTATCCTGCC TAGTCATGAG GCACCATCTC TGTCTATCAA CACTTACTCT
              TTTGTAAAGA ACTTGTGAAA ATGAAGGACA AATTTATCAC CTTCATTGGA GTCATGGGAA
              CCTGACTCCC AGCAGTCACA GGTCAGGGGA AGGTACCCGC AGAGGACAGA CCTCACTAGG
              ACAATTAGTC CAGTTTCAAC ACATCCTCTT ACCTAGGGTT TCCTGATTCT GACCTGGGTC
              TGCAGTCACA GTTCTGGACA CTCCTCTGGG ATCTCATGAC CCTGCTTCCT CCCTGGCCTT
              TCACAGTTTA TTTTCTTTCC ACAGATGGAA AAGGAGGCAG CTATGCTAAG GCTTCATGCA
              AGTGTGGTAG GGGTGGGAAG AGTGATCCCT GAGATCCTTG
  Observed:   G/T
  3' Assay:   GATAGTGTAG ACAGGAGCCC ATGGGGGAGC TCACCACCCC AAAATTCCTC CTTTAGTCAC
              ATCATCTGTG GGCTCTGACC AGATTTTGTT TTTGTTCCAC CCGAAACAGG GACAGTACCC
              AGGGCTCTGA TGTGTCTCTC AAGGCTTGTA AAATGACAAC TTAGGGGGCC TGAAGGGAAG
              GAGGAGTTGG GGCATAGGGG ACACAACTAG GCTCTGGAGA TTCTTTGATT TGGAATTTTT
              CAGGGTGTGG TGGGCTGTTC AGTGTCACAA CTTACTATGA CTGATCTGAA TTTGTTCATG
              ACTATTTTTT TTCTAAGACT GCCTTGTGAG GGACTGAGAT GCAAGATTTG TTCATGCCTC
              CCCTTTGTGA CTTCAAGGGC CTCTGTCTTC TCTTTCTGCC

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION:
FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .