proteins
| 9 proteins |
S | COG4737 | Uncharacterized protein conserved in bacteria | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Neisseria meningitidis MC58 (Neisseriales | Betaproteobacteria) | ||||
| NMB1890 | ||||
122 letters (r) 0
0 543 = ||| 1 NMB1890 (122) = 0
-2
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NMB1890
(122 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
NMB1890 213 5e-56
NMA0565 213 6e-56
SMc01995 115 1e-26
ECs4597 70 9e-13
Z5150 70 9e-13
asl1720 69 1e-12
Z1060 68 4e-12
STM3777 66 2e-11
RSc0124 62 3e-10
FN0697 32 0.31
MA0286 31 0.37
VNG0028C 31 0.55
VC1257 30 0.71
PA2542 30 0.84
slr0664 30 1.2
ECs3115 30 1.3
ZubiG 30 1.3
BB0694 30 1.3
YPO1215 29 1.7
ubiG 29 1.8
AF0395 28 2.4
VCA0468 28 3.8
STM2276 28 3.9
CC0798 28 4.3
b1228 28 4.8
SMb20054 27 5.4
HP0610 27 5.7
MA0523 27 6.0
MT2580 27 8.0
Rv2505c 27 8.0
PH0799 27 9.7
# >NMB1890
# Length = 122
#
# Score = 213 bits (543), Expect = 5e-56
# Identities = 122/122 (100%), Positives = 122/122 (100%)
#
# Query: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
# MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR
# Sbjct: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
#
# Query: 61 SLILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
# SLILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI
# Sbjct: 61 SLILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
#
# Query: 121 ES 122
# ES
# Sbjct: 121 ES 122
#
#
# >NMA0565
# Length = 122
#
# Score = 213 bits (542), Expect = 6e-56
# Identities = 121/122 (99%), Positives = 122/122 (99%)
#
# Query: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
# MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR
# Sbjct: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
#
# Query: 61 SLILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
# SLILFKQAD+AFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI
# Sbjct: 61 SLILFKQADRAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
#
# Query: 121 ES 122
# ES
# Sbjct: 121 ES 122
#
#
# >SMc01995
# Length = 128
#
# Score = 115 bits (289), Expect = 1e-26
# Identities = 62/121 (51%), Positives = 88/121 (72%)
#
# Query: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
# +RIFKN W +F +K +I D+ L++AV RA+ G IDADLGGGVIKQR+AR GQG+SGGYR
# Sbjct: 3 VRIFKNAWFERFTRKQRIADAALVDAVRRAERGQIDADLGGGVIKQRVARAGQGKSGGYR 62
#
# Query: 61 SLILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
# ++ILF+ +AFFV+ FAK+++ NI D E +++K A L + A++A L G +E+
# Sbjct: 63 TIILFRLEQRAFFVFGFAKSEQANIEDGEEALFKKMAKELLALSDAQMAVLIGKGRFSEV 122
#
# Query: 121 E 121
# E
# Sbjct: 123 E 123
#
#
# >ECs4597
# Length = 117
#
# Score = 69.7 bits (169), Expect = 9e-13
# Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
#
# Query: 3 IFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYRSL 62
# +FK +W + A+ H I D EL A+ + G DA LGGGV K+R+ + + R++
# Sbjct: 1 MFKTKWFAREARSHAITDEELCRAILETEQGKADA-LGGGVFKKRLHQNRE------RAI 53
#
# Query: 63 ILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
# IL K F+ + +AK D NI+ +EL +R+ A +Y T+A+L A+ +TEI
# Sbjct: 54 ILAKGVSNWFYTFLYAKQDMSNINSQELAGFREIAKHYAFLTKAQLTAMINTKELTEI 111
#
#
# >Z5150
# Length = 117
#
# Score = 69.7 bits (169), Expect = 9e-13
# Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
#
# Query: 3 IFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYRSL 62
# +FK +W + A+ H I D EL A+ + G DA LGGGV K+R+ + + R++
# Sbjct: 1 MFKTKWFAREARSHAITDEELCRAILETEQGKADA-LGGGVFKKRLHQNRE------RAI 53
#
# Query: 63 ILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
# IL K F+ + +AK D NI+ +EL +R+ A +Y T+A+L A+ +TEI
# Sbjct: 54 ILAKGVSNWFYTFLYAKQDMSNINSQELAGFREIAKHYAFLTKAQLTAMINTKELTEI 111
#
#
# >asl1720
# Length = 92
#
# Score = 69.3 bits (168), Expect = 1e-12
# Identities = 35/81 (43%), Positives = 51/81 (62%)
#
# Query: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
# M+I+KN+ ++A+K + + L AV GL DADLGGG+ K+RIA+ G+G+SGG+R
# Sbjct: 1 MKIYKNRTFDRWARKEGLKNLSLCNAVNEMAPGLYDADLGGGLFKKRIAKPGKGKSGGFR 60
#
# Query: 61 SLILFKQADKAFFVYAFAKND 81
# +LI D F AF K +
# Sbjct: 61 TLIATNNEDVGFLFLAFQKTN 81
#
#
# >Z1060
# Length = 128
#
# Score = 67.8 bits (164), Expect = 4e-12
# Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
#
# Query: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
# M ++K + + KK I+D L+ A E G+ +ADLG GVIK+R+ Q QG+SGG R
# Sbjct: 1 MGVYKARRFSQSTKKLGIHDKVLMAAAEEVMQGIWEADLGSGVIKKRLPLQ-QGKSGGAR 59
#
# Query: 61 SLILFKQADKAFFVYAF-----AKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDG 115
# ++I FK A+ FF + + + I D EL Y+K A +L ++ ++ L E G
# Sbjct: 60 TIIFFKSANHVFFYDGWSKSGLSSKGSKEIEDDELAAYKKMANAFLAFSNKQIEDLIETG 119
#
# Query: 116 IITEIES 122
# + E+++
# Sbjct: 120 FLIEVKN 126
#
#
# >STM3777
# Length = 119
#
# Score = 65.9 bits (159), Expect = 2e-11
# Identities = 44/120 (36%), Positives = 66/120 (54%), Gaps = 7/120 (5%)
#
# Query: 1 MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYR 60
# MR FK +W + AK H I D EL EA+ G D +LGGGV K+R+ Q R R
# Sbjct: 1 MRTFKTRWFNREAKPHTIKDDELSEAINAVLQGKAD-NLGGGVYKKRL---NQNRD---R 53
#
# Query: 61 SLILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIITEI 120
# +++L K + F+ + +AK D NIS +EL +R+ A +Y T ++ AL + + E+
# Sbjct: 54 AIVLAKGGEHWFYTFLYAKQDMANISYRELAGFRELAKHYACLTEDQITALINNKELVEV 113
#
#
# >RSc0124
# Length = 121
#
# Score = 61.6 bits (148), Expect = 3e-10
# Identities = 42/112 (37%), Positives = 63/112 (55%), Gaps = 7/112 (6%)
#
# Query: 2 RIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYRS 61
# R+FK +W K A+ I+D+E + + GL D DLGG V K+R+ + + R
# Sbjct: 7 RVFKTKWFNKAAQAAGISDAEPHKVARQLMQGLGD-DLGGNVWKKRLDQNRK------RG 59
#
# Query: 62 LILFKQADKAFFVYAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKE 113
# ++L K FFV+ FAK+DR+NI EL +RK A+ + + RA+L L E
# Sbjct: 60 IVLNKAGRCWFFVFLFAKSDRDNIDAPELAAFRKLASDFGRCARADLDRLVE 111
#
#
# >FN0697
# Length = 867
#
# Score = 31.6 bits (70), Expect = 0.31
# Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
#
# Query: 31 DNGLIDADLGGGVIKQRIARQG--QGRSGGYRSLILFKQADKAFFVYAFAKND-RENISD 87
# ++G+I ++ G G I +RI R+ GR GY+ L ++K DK + A D R+N+ +
# Sbjct: 287 NDGVIPSNEGRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEIAYPDLRKNVEN 346
#
#
# >MA0286
# Length = 783
#
# Score = 31.2 bits (69), Expect = 0.37
# Identities = 13/33 (39%), Positives = 24/33 (72%)
#
# Query: 2 RIFKNQWIVKFAKKHKINDSELLEAVERADNGL 34
# +IF+ Q IV + +++ ++EL+EAV+R D+ L
# Sbjct: 63 KIFQTQSIVVMVEGNEVKNAELMEAVDRLDHQL 95
#
#
# >VNG0028C
# Length = 184
#
# Score = 30.8 bits (68), Expect = 0.55
# Identities = 21/86 (24%), Positives = 43/86 (49%), Gaps = 7/86 (8%)
#
# Query: 15 KHKINDSELLEAVERADNGLIDADLG-------GGVIKQRIARQGQGRSGGYRSLILFKQ 67
# + +++D+EL + ++ AD+G LG G I + I+R+G+ S GYR + +
# Sbjct: 8 ERRLSDAELDQLLKTADSGERARRLGFVKNLYLGDSISEAISREGRSESTGYRWVHRWND 67
#
# Query: 68 ADKAFFVYAFAKNDRENISDKELDVY 93
# + ++ +S+ E+DV+
# Sbjct: 68 GGLDALLPSYGGGRPAKLSESEVDVF 93
#
#
# >VC1257
# Length = 245
#
# Score = 30.4 bits (67), Expect = 0.71
# Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
#
# Query: 11 KFAKKHKINDSELLEAVERADNGL-----IDADLGGGVIKQRIARQGQGRSG 57
# +F H+IN L +E+A NGL +D GGG++ + +AR+G +G
# Sbjct: 38 EFKPLHQINPLRLNYVLEKA-NGLFGKRVLDVGCGGGILAESMAREGAQVTG 88
#
#
# >PA2542
# Length = 1221
#
# Score = 30.0 bits (66), Expect = 0.84
# Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
#
# Query: 7 QWIVK-FAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYRSLIL 64
# QW + FA + K+N L+ R +G++ D G G + R+ QGQ GY SL L
# Sbjct: 718 QWFPEDFAWQGKLNGDLQLDVPARGPSGVVSLDAGSGTL--RLRDQGQWVDVGYDSLRL 774
#
#
# >slr0664
# Length = 120
#
# Score = 29.6 bits (65), Expect = 1.2
# Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
#
# Query: 13 AKKHKINDSELLEAVERADNGLIDADLGGG------VIKQRIARQG--QGRSGGYRSLIL 64
# AKK++ S++ +E G+I D G V K RI +G+S GYR + L
# Sbjct: 24 AKKYRNIRSDVQPIIEALQKGVISGDRLAGFGSDIYVYKLRIKNSNIQKGKSSGYRLIYL 83
#
# Query: 65 FKQADKAFFVYAFAKNDRENISDKELD 91
# + + + ++K ++E+I+ +++
# Sbjct: 84 LESENSILLLTIYSKAEQEDIAASDIN 110
#
#
# >ECs3115
# Length = 240
#
# Score = 29.6 bits (65), Expect = 1.3
# Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
#
# Query: 11 KFAKKHKINDSELLEAVERA----DNGLIDADLGGGVIKQRIARQGQGRSG 57
# +F H+IN L ERA ++D GGG++ + +AR+G +G
# Sbjct: 33 EFKPLHRINPLRLSYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTG 83
#
#
# >ZubiG
# Length = 240
#
# Score = 29.6 bits (65), Expect = 1.3
# Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
#
# Query: 11 KFAKKHKINDSELLEAVERA----DNGLIDADLGGGVIKQRIARQGQGRSG 57
# +F H+IN L ERA ++D GGG++ + +AR+G +G
# Sbjct: 33 EFKPLHRINPLRLSYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTG 83
#
#
# >BB0694
# Length = 447
#
# Score = 29.6 bits (65), Expect = 1.3
# Identities = 17/43 (39%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
#
# Query: 4 FKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVIKQ 46
# F+N +I + K IND + EA+E N L+DAD+ VI++
# Sbjct: 12 FRN-FINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRR 53
#
#
# >YPO1215
# Length = 242
#
# Score = 28.9 bits (63), Expect = 1.7
# Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 7/59 (11%)
#
# Query: 11 KFAKKHKINDSELLEAVERA----DNGLIDADLGGGVIKQRIARQGQGRSG---GYRSL 62
# +F H+IN L ++R+ + ++D GGG++ + +AR+G +G GY L
# Sbjct: 33 EFKPLHRINPLRLNYILQRSGGIFEKKVLDVGCGGGILAESMAREGAQVTGLDMGYEPL 91
#
#
# >ubiG
# Length = 240
#
# Score = 28.9 bits (63), Expect = 1.8
# Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
#
# Query: 11 KFAKKHKINDSELLEAVERA----DNGLIDADLGGGVIKQRIARQGQGRSG 57
# +F H+IN L ERA ++D GGG++ + +AR+G +G
# Sbjct: 33 EFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTG 83
#
#
# >AF0395
# Length = 436
#
# Score = 28.5 bits (62), Expect = 2.4
# Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
#
# Query: 12 FAKKHKINDSELLEAVERADNGLIDADLGGGVIKQRIARQGQGR 55
# F +H + +EL EAVE+A+N +I +G G + +A R
# Sbjct: 125 FTVRHPVQAAELREAVEKAENVVI---VGAGYVGVEMAEAAAAR 165
#
#
# >VCA0468
# Length = 110
#
# Score = 27.7 bits (60), Expect = 3.8
# Identities = 14/47 (29%), Positives = 28/47 (58%), Gaps = 1/47 (2%)
#
# Query: 41 GGVIKQRIARQGQGRSGGYRSLILFKQADKAFFVYA-FAKNDRENIS 86
# GG+ K R+A +G+G+ GG R + F + F++ + KN+ +++
# Sbjct: 45 GGLRKIRVASKGKGKRGGSRIIYYFLDEKRRFYLLTIYGKNEMSDLN 91
#
#
# >STM2276
# Length = 242
#
# Score = 27.7 bits (60), Expect = 3.9
# Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
#
# Query: 11 KFAKKHKINDSELLEAVERA----DNGLIDADLGGGVIKQRIARQGQGRSG 57
# +F H+IN L ER+ ++D GGG++ + +AR+G +G
# Sbjct: 33 EFKPLHRINPLRLGYITERSGGLFGKKVLDVGCGGGILAESMAREGATVTG 83
#
#
# >CC0798
# Length = 641
#
# Score = 27.7 bits (60), Expect = 4.3
# Identities = 12/20 (60%), Positives = 15/20 (75%)
#
# Query: 33 GLIDADLGGGVIKQRIARQG 52
# GLIDA GG VI+ I+R+G
# Sbjct: 190 GLIDATWGGSVIQDWISREG 209
#
#
# >b1228
# Length = 91
#
# Score = 27.7 bits (60), Expect = 4.8
# Identities = 17/42 (40%), Positives = 23/42 (54%)
#
# Query: 21 SELLEAVERADNGLIDADLGGGVIKQRIARQGQGRSGGYRSL 62
# +E L A ++G ++D GGG I QR A + GR RSL
# Sbjct: 43 AEYLIADSFENSGAFESDGGGGRITQRCALRPSGRCLRQRSL 84
#
#
# >SMb20054
# Length = 275
#
# Score = 27.3 bits (59), Expect = 5.4
# Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
#
# Query: 21 SELLEAVERADNGLIDADLGGGVIKQRIARQGQGRS------GGYRSLILFKQADKAFFV 74
# +EL+EA++ L+ GGG + + + R G GR G L+L +A+
# Sbjct: 80 AELIEALDLRSVILVGHSTGGGEVTRYVGRHGTGRVAKVALIGAVPPLMLKTEANPGGLP 139
#
# Query: 75 YAFAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKE 113
# R+ D +R + Y R E AA+ E
# Sbjct: 140 IDVFDGIRKGTYDNRSQFFRDLTIPFYGYNR-EGAAISE 177
#
#
# >HP0610
# Length = 1943
#
# Score = 27.3 bits (59), Expect = 5.7
# Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
#
# Query: 84 NISDKELDVYRKAAAYYLKYTR--AELAALKEDG 115
# ++SDK +D++ + YY+KY + A L A+K G
# Sbjct: 1520 SVSDKPMDIHAPSLEYYIKYIQGSAGLDAIKSAG 1553
#
#
# >MA0523
# Length = 900
#
# Score = 27.3 bits (59), Expect = 6.0
# Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
#
# Query: 73 FVYAFAKNDRENISDKELDV-YRKAAAYYLKYTRAELAALKEDGI 116
# ++ AF + +RE K L V Y K YY++ T A + + ED I
# Sbjct: 468 WIAAFQQKERERSGIKSLKVGYNKVFGYYIEVTHANSSQVPEDYI 512
#
#
# >MT2580
# Length = 547
#
# Score = 26.9 bits (58), Expect = 8.0
# Identities = 13/34 (38%), Positives = 18/34 (52%)
#
# Query: 9 IVKFAKKHKINDSELLEAVERADNGLIDADLGGG 42
# +V + + N SELL V R GL+ A +G G
# Sbjct: 45 LVDMVARRRFNYSELLTDVHRLATGLVRAGIGPG 78
#
#
# >Rv2505c
# Length = 547
#
# Score = 26.9 bits (58), Expect = 8.0
# Identities = 13/34 (38%), Positives = 18/34 (52%)
#
# Query: 9 IVKFAKKHKINDSELLEAVERADNGLIDADLGGG 42
# +V + + N SELL V R GL+ A +G G
# Sbjct: 45 LVDMVARRRFNYSELLTDVHRLATGLVRAGIGPG 78
#
#
# >PH0799
# Length = 267
#
# Score = 26.6 bits (57), Expect = 9.7
# Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
#
# Query: 8 WIVKFAKKHKINDSELLEAVER----ADNGLIDADLGGGVIK 45
# W+V+ K + E+LE V+R AD+G I +L +IK
# Sbjct: 130 WVVRGIKNSTLKTKEMLEEVQREILLADDGFIAINLEDDIIK 171
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.137 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,675,392
Number of Sequences: 192987
Number of extensions: 539355
Number of successful extensions: 1528
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1494
Number of HSP's gapped (non-prelim): 53
length of query: 122
length of database: 59,019,183
effective HSP length: 98
effective length of query: 24
effective length of database: 40,106,457
effective search space: 962554968
effective search space used: 962554968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)