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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs864493          
refSNP ID: rs864493
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss38967335 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs864493 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss1280661KWOK|OVLP-000804-532848rev/BC/Tggtgccgggggagtctgtggtgccggtgccagacatgggggcgggagcgcagcaggcccc09/02/0010/10/0386Genomic91 %
ss2666601SC_JCM|AC069261.7_127044fwd/TA/Gggggcctgctgcgctcccgcccccatgtctggcaccggcaccacagactcccccggcacc11/03/0010/10/0392Genomicunknown
ss38967335ABI|hCV2694017fwd/TA/Gggggcctgctgcgctcccgcccccatgtctggcaccggcaccacagactcccccggcacc07/16/0507/16/05126Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs864493|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=126
 TTCCATGCAG TAAATTCGTG TTTGCAGAGC TCTGGGAAAT CTTTAGGAGG TGGCATGAGT
 ATTATTAATT GGGGAAAAAG AACAGATTAT GCCAAATAAA TCCTTCCCAC ATAACCAAAC
 CCTCTCCGAG AGGGGGAGGG GGAGAGCGCA GCCCCAGGAG GGGTCTCCAT CCCTCACCAG
 GGCCTGACAG CCACATTACC ATTTACATGG ATTTATCAAT AGTATTGATC CCCAGCAGCG
 TAAATAGCTC AGTGGGAAGA GGCCAGGGCT GGGGCCTGCT GCGCTCCCGC CCCCATGTCT
 R
 GGCACCGGCA CCACAGACTC CCCCGGCACC CGCTGGCGGT GGCAGCAGTG AATTTCCAAG
 CAGGGACACG GCAGGCGGCT CAGGGAAGCC AGACAGAGCC CGGGATGCCC TGGCAGCCGC
 GCTGCCGACT CGCCAGTCAC CGCTGGCTCC ACCCCCCCTT CATTGCTCTG CTGGGCCTGA
 CTCAGTCTTT GCATCTGTTC AATGGGCGGG GGCACCTGCC CTTCTCCATC CTCTCCGGAC
 AAGCAGAGGG GAGTGGGAAA AGGCCCCCTC CCTCCCCCAG ATCCCCCCAC TGTCCACCCC

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs864493 maps exactly once on NCBI human chromosome 12
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
12NT_009755.182459741123615761plusGref_assemblyreferencereferenceview300
12NW_925395.172273177124649348plusGalt_assembly_1CeleraCeleraview300

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AC069261.6 AC025685 AC073592 AC073592.5
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC073592.11 NC_000012.10 AC025685.2

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .