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Genomic biology
Bos taurus
Canis familiaris
Danio rerio
Homo sapiens
Mus musculus
Rattus novegicus
Sus scrofa

UniSTS:270168 Links
PMC109444P3
Bos taurus chromosome 2, locus CXCR4
Canis familiaris chromosome 19, locus CXCR4
Homo sapiens chromosome 2, locus CXCR4
Macaca mulatta chromosome 13, locus CXCR4
Ovis aries locus NPY3R
Pan troglodytes chromosome 2B, locus CXCR4
Sus scrofa chromosome 15, locus CXCR4

Found by e-PCR in sequences from Bos taurus, Canis familiaris, Homo sapiens, Ovis aries, Pan troglodytes and Sus scrofa.

Primer InformationHelp

Forward primer:TGACTCCATGAAGGAACCCTG
Reverse primer:CTTGGCCTCTGACTGTTGGTG
PCR product size:381 (bp), Homo sapiens
 381 (bp), Mus musculus

   Bos taurus
Name: PMC109444P3
Polymorphism info:  

Cross References Help
Gene GeneID:281736
 Symbol:CXCR4
 Description:chemokine (C-X-C motif) receptor 4
 Position: 
UniGeneBt.8957 Chemokine (C-X-C motif) receptor 4

Mapping InformationHelp
PMC109444P3 Sequence Map: Chr 2 Map Viewer
  Position: 64218136-64218515 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
NM_174301.3 154 .. 533 (380 bp)  
 
mRNA (3)
M86739.1 126 .. 505 (380 bp)  
AF399642.1 110 .. 489 (380 bp)  
BC105217.1 154 .. 533 (380 bp)  
 
Genomic (1)
CM000178.3 64218136 .. 64218515 (380 bp)  
 
ESTs (5 of 48)[Show All Hits]
CK773885.1 183 .. 562 (380 bp)  
CK834851.1 134 .. 513 (380 bp)  
CX735506.1 28 .. 407 (380 bp)  
DT721805.1 154 .. 533 (380 bp)  
DV800886.1 155 .. 534 (380 bp)  
 

   Canis familiaris
Name: PMC109444P3
Polymorphism info:  

Cross References Help
Gene GeneID:483900
 Symbol:CXCR4
 Description:chemokine (C-X-C motif) receptor 4
 Position: 

Mapping InformationHelp
PMC109444P3 Sequence Map: Chr 19 Map Viewer
  Position: 41894419-41894799 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
NM_001048026.1 88 .. 468 (381 bp)  
 
mRNA (1)
DQ182699.1 88 .. 468 (381 bp)  
 
Genomic (1)
CM000019.2 41894419 .. 41894799 (381 bp)  
 
Whole Genome Shotgun sequences (1)
AAEX02015179.1 403554 .. 403934 (381 bp)  
 

   Homo sapiens
Name: PMC109444P3
Polymorphism info:  

Cross References Help
Gene GeneID:7852
 Symbol:CXCR4
 Description:chemokine (C-X-C motif) receptor 4
 Position:2q21
UniGeneHs.593413 Chemokine (C-X-C motif) receptor 4

Mapping InformationHelp
PMC109444P3 Sequence Map: Chr 2|HuRef Map Viewer
  Position: 128865559-128865939 (bp)
 
PMC109444P3 Sequence Map: Chr 2|Celera Map Viewer
  Position: 130583773-130584153 (bp)
 
PMC109444P3 Sequence Map: Chr 2 Map Viewer
  Position: 136589525-136589905 (bp)

Electronic PCR results Help
RefSeq mRNA (2)
NM_001008540.1 379 .. 759 (381 bp)  
NM_003467.2 158 .. 538 (381 bp)  
 
mRNA (5 of 12)[Show All Hits]
L01639.1 88 .. 468 (381 bp)  
D10924.1 139 .. 519 (381 bp)  
M99293.1 147 .. 527 (381 bp)  
X71635.1 130 .. 510 (381 bp)  
L06797.1 135 .. 515 (381 bp)  
 
Genomic (5 of 13)[Show All Hits]
G28514.1 139 .. 519 (381 bp)  
AF005058.1 3232 .. 3612 (381 bp)  
Y14739.1 2245 .. 2625 (381 bp)  
AJ224869.1 4915 .. 5295 (381 bp)  
AF052572.1 4915 .. 5295 (381 bp)  
 
ESTs (5 of 138)[Show All Hits]
BE617402.1 131 .. 509 (379 bp)  
AV708554.1 136 .. 462 (327 bp)  
AU117058.1 152 .. 532 (381 bp)  
BF591285.1 102 .. 482 (381 bp)  
BF797340.1 139 .. 519 (381 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01022645.1 68524 .. 68904 (381 bp)  
AADC01019570.1 109401 .. 109781 (381 bp)  
AADB02002347.1 75357 .. 75737 (381 bp)  
ABBA01028153.1 46672 .. 47052 (381 bp)  
 

   Macaca fascicularis
 
Polymorphism info:  

Cross References Help
UniGeneMfa.5404 Macaca fascicularis mRNA for fusin (LESTR)


   Macaca mulatta
Name: PMC109444P3
Polymorphism info:  

Cross References Help
Gene GeneID:707329
 Symbol:CXCR4
 Description:chemokine (C-X-C motif) receptor 4
 Position: 
UniGeneMmu.2390 Chemokine (C-X-C motif) receptor 4

Mapping InformationHelp
PMC109444P3 Sequence Map: Chr 13 Map Viewer
  Position: 116019739-116020119 (bp)

   Mus musculus
 
Polymorphism info:  

   Ovis aries
 
Polymorphism info:  

Cross References Help
Gene GeneID:443532
 Symbol:NPY3R
 Description:neuropeptide Y receptor type 3
 Position: 
UniGeneOar.408 Neuropeptide Y receptor type 3


Electronic PCR results Help
mRNA (1)
U38942.1 35 .. 415 (381 bp)  
 
ESTs (5 of 6)[Show All Hits]
DY500453.1 135 .. 515 (381 bp)  
DY510919.1 129 .. 509 (381 bp)  
EE746299.1 134 .. 514 (381 bp)  
EE811590.1 110 .. 490 (381 bp)  
EE812775.1 137 .. 517 (381 bp)  
 

   Pan troglodytes
Name: PMC109444P3
Polymorphism info:  

Cross References Help
Gene GeneID:450130
 Symbol:CXCR4
 Description:chemokine (C-X-C motif) receptor 4
 Position: 

Mapping InformationHelp
PMC109444P3 Sequence Map: Chr 2B Map Viewer
  Position: 140303409-140303789 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
NM_001009047.1 91 .. 471 (381 bp)  
 
mRNA (1)
U89798.1 91 .. 471 (381 bp)  
 
Genomic (1)
CM000316.1 140303409 .. 140303789 (381 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01231711.1 26180 .. 26560 (381 bp)  
AACZ02026540.1 14495 .. 14875 (381 bp)  
 

   Sus scrofa
Name: PMC109444P3
Polymorphism info:  

Cross References Help
Gene GeneID:396659
 Symbol:CXCR4
 Description:chemokine (C-X-C motif) receptor 4
 Position: 
UniGeneSsc.7176 Chemokine (C-X-C motif) receptor 4

Mapping InformationHelp
PMC109444P3 Sequence Map: Chr 15 Map Viewer
  Position: 5062869-5063249 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
NM_213773.1 66 .. 446 (381 bp)  
 
mRNA (2)
AB116560.1 66 .. 446 (381 bp)  
DQ124104.1 66 .. 446 (381 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
CU463931.1 169540 .. 169920 (381 bp)  
 
ESTs (5 of 31)[Show All Hits]
CB287514.1 140 .. 520 (381 bp)  
CB287516.1 140 .. 520 (381 bp)  
BP162423.1 153 .. 533 (381 bp)  
BP162590.1 155 .. 535 (381 bp)  
BP165159.1 155 .. 535 (381 bp)  
 

 

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