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| Status |
Public on Mar 12, 2005 |
| Title |
MRS pH 4.5 (lactate)-1 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source Name |
L. acidophilus NCK1398 (NCFM::LacL)
|
| Organism(s) |
Lactobacillus acidophilus |
| Extracted molecule |
total RNA |
| |
|
| Channel 2 |
| Source Name |
L. acidophilus NCK1686 (NCFM::HPK)
|
| Organism(s) |
Lactobacillus acidophilus |
| Extracted molecule |
total RNA |
| |
|
| |
| Description |
Early log phase cultures wt (NCK1398, control, Cy3) vs. test (mutant, NCK1686, Cy5) were exposed to MRS pH 4.5 (adjusted with lactate) for 30 min.
|
| |
|
| Submission date |
Nov 12, 2004 |
| Contact name |
Todd Robert Klaenhammer |
| E-mail(s) |
maperil@ncsu.edu, trk@ncsu.edu, yjgoh@ncsu.edu
|
| Phone |
919-515-2972
|
| Fax |
919 513 0014
|
| Organization name |
North Carolina State University
|
| Department |
Department of Food, Bioprocessing, and Nutrition Sciences
|
| Street address |
|
| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27695 |
| Country |
USA |
| |
|
| Platform ID |
GPL1401 |
| Series (1) |
| GSE1976 |
Acid sensitivity and opp transport regulation in L. acidophilus |
|
| Data table header descriptions |
| ID_REF |
|
| RATIO |
(Cy5 Normalized - Background) / (Cy3 Normalized -Background) |
| VALUE |
log ratio (log2 of RATIO) |
| CH1_RAW |
raw signal output for channel 1 |
| CH1_BKD |
background signal output for channel 1 |
| CH1_SD |
standard deviation calculated for the mean signal for channel 1 |
| CH1_BKD_SD |
standard deviation for the mean background signal for channel 1 |
| CH2_RAW |
raw signal output for channel 2 |
| CH2_BKD |
background signal output for channel 2 |
| CH2_SD |
standard deviation calculated for the mean signal for channel 2 |
| CH2_BKD_SD |
standard deviation for the mean background signal for channel 2 |
| Data table |
| ID_REF |
RATIO |
VALUE |
CH1_RAW |
CH1_BKD |
CH1_SD |
CH1_BKD_SD |
CH2_RAW |
CH2_BKD |
CH2_SD |
CH2_BKD_SD |
| 1 |
1.350495839 |
0.433489194 |
1621.590698 |
350.375 |
1096.436035 |
280.946838 |
1479.726074 |
277.083344 |
1082.763306 |
276.541016 |
| 2 |
1.407740188 |
0.493381095 |
1282.052612 |
594.791687 |
375.811615 |
490.896759 |
1101.581421 |
423.833344 |
689.349487 |
397.194763 |
| 3 |
0.975997773 |
-0.035050239 |
1937.141113 |
481.25 |
1061.804565 |
369.607513 |
1249.222168 |
253.8125 |
899.288635 |
308.702484 |
| 4 |
1.478327513 |
0.563965924 |
2385.152832 |
323.6875 |
1754.633301 |
278.686279 |
2324.721191 |
189.854172 |
2050.69458 |
227.89061 |
| 5 |
1.168114252 |
0.22418139 |
2646.928223 |
607.666687 |
1820.945313 |
442.350372 |
1924.46582 |
255.75 |
1579.631958 |
229.661682 |
| 6 |
1.468059492 |
0.553910434 |
3357.654297 |
614.0625 |
2013.355713 |
392.232574 |
3119.338623 |
297.791656 |
2652.125488 |
278.849152 |
| 7 |
1.059177663 |
0.082944603 |
2561.489502 |
591.020813 |
1707.759399 |
1074.893433 |
1932.717529 |
470.666656 |
1444.637695 |
1133.175415 |
| 8 |
1.123654536 |
0.168198552 |
3172.004639 |
397.145844 |
2314.150391 |
312.544739 |
2509.414795 |
325.1875 |
1701.898438 |
320.187408 |
| 9 |
1.460838926 |
0.546797114 |
4024 |
444.604156 |
2985.600098 |
345.513428 |
3990.681396 |
327.6875 |
2940.524658 |
267.154449 |
| 10 |
1.424232944 |
0.51018513 |
2398.666748 |
330.875 |
1987.510254 |
266.576691 |
2233.643799 |
170.583328 |
2188.575195 |
200.868729 |
| 11 |
1.432498194 |
0.51853332 |
2044.008423 |
277.395844 |
1731.477783 |
236.939957 |
1979.34082 |
206.541672 |
1973.379395 |
270.364197 |
| 12 |
1.555379513 |
0.637266642 |
2067.034424 |
416.416656 |
1448.422485 |
326.974121 |
2135.17334 |
336.6875 |
1674.384033 |
322.28006 |
| 13 |
1.161844013 |
0.216416389 |
3191.9021 |
569.520813 |
2600.066162 |
1369.449829 |
2638.485596 |
504.125 |
2061.507568 |
2010.860107 |
| 14 |
1.260403163 |
0.33388528 |
3615.030518 |
350.1875 |
2958.5625 |
358.346832 |
3095.718262 |
213.041672 |
2684.434082 |
212.495804 |
| 15 |
1.452138065 |
0.538178627 |
4380.616211 |
373.458344 |
3743.968506 |
308.952942 |
4392.30127 |
315.979156 |
3461.817627 |
256.530731 |
| 16 |
1.541378746 |
0.624221403 |
5563.440918 |
287.5625 |
6825.265137 |
253.347534 |
5859.202148 |
162.4375 |
6945.890625 |
207.573196 |
| 17 |
1.525622274 |
0.609397813 |
5459.453125 |
347.75 |
6695.005371 |
363.214813 |
5669.049316 |
205.979172 |
6897.587402 |
386.289978 |
| 18 |
1.413412067 |
0.499182132 |
5309.259277 |
509.5 |
6086.149902 |
390.831024 |
5098.185059 |
345.791656 |
6177.548828 |
299.30188 |
| 19 |
1.247263083 |
0.318765802 |
22098.79102 |
321.979156 |
19320.57617 |
308.267456 |
19172.75 |
145.479172 |
15944.04688 |
160.670273 |
| 20 |
1.171273911 |
0.2280785 |
24826.78516 |
322.270844 |
20724.1543 |
309.908691 |
20333.36914 |
227.229172 |
16497.19531 |
249.668564 |
Total number of rows: 6906
Table truncated, full table size 784 Kbytes.
| Supplementary data files not provided |
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